Multiple sequence alignment - TraesCS3D01G456700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G456700 chr3D 100.000 3188 0 0 1 3188 562500767 562497580 0.000000e+00 5888.0
1 TraesCS3D01G456700 chr3D 76.165 1309 229 54 915 2195 562361760 562360507 2.100000e-171 612.0
2 TraesCS3D01G456700 chr3D 82.710 214 33 4 955 1166 565830729 565830940 1.510000e-43 187.0
3 TraesCS3D01G456700 chr3D 81.818 220 35 4 949 1165 565604177 565604394 2.530000e-41 180.0
4 TraesCS3D01G456700 chr3D 95.000 40 2 0 1418 1457 569888291 569888252 2.650000e-06 63.9
5 TraesCS3D01G456700 chr3A 93.794 1547 75 7 853 2384 697597106 697595566 0.000000e+00 2305.0
6 TraesCS3D01G456700 chr3A 91.591 773 42 10 2426 3188 697595566 697594807 0.000000e+00 1046.0
7 TraesCS3D01G456700 chr3A 78.300 1318 228 32 908 2195 708640847 708642136 0.000000e+00 797.0
8 TraesCS3D01G456700 chr3A 74.088 521 107 22 1663 2169 699983080 699983586 4.200000e-44 189.0
9 TraesCS3D01G456700 chr3A 90.291 103 6 1 700 802 697607516 697607418 7.180000e-27 132.0
10 TraesCS3D01G456700 chr3B 92.263 1370 72 13 1297 2640 749687060 749685699 0.000000e+00 1912.0
11 TraesCS3D01G456700 chr3B 89.474 665 45 12 660 1300 749698266 749697603 0.000000e+00 817.0
12 TraesCS3D01G456700 chr3B 75.988 987 181 28 1226 2195 749654205 749653258 2.900000e-125 459.0
13 TraesCS3D01G456700 chr3B 90.169 295 22 6 360 651 46617688 46617978 8.350000e-101 377.0
14 TraesCS3D01G456700 chr3B 90.278 288 22 5 360 644 824304769 824305053 3.880000e-99 372.0
15 TraesCS3D01G456700 chr3B 83.857 223 31 4 949 1168 753672720 753672940 1.160000e-49 207.0
16 TraesCS3D01G456700 chr3B 80.263 228 43 2 944 1170 752211523 752211297 1.520000e-38 171.0
17 TraesCS3D01G456700 chr4A 90.455 901 64 8 2302 3188 276001616 276000724 0.000000e+00 1168.0
18 TraesCS3D01G456700 chr4A 90.000 290 23 5 360 646 740743402 740743116 1.400000e-98 370.0
19 TraesCS3D01G456700 chr7D 94.382 356 19 1 2302 2656 227704730 227705085 2.160000e-151 545.0
20 TraesCS3D01G456700 chr7D 90.836 371 24 4 2651 3015 227705045 227705411 3.700000e-134 488.0
21 TraesCS3D01G456700 chr6B 90.941 287 22 4 360 644 707798106 707797822 1.790000e-102 383.0
22 TraesCS3D01G456700 chr6B 90.559 286 25 2 360 644 339351366 339351082 8.350000e-101 377.0
23 TraesCS3D01G456700 chr6B 83.857 223 31 4 949 1168 565398501 565398721 1.160000e-49 207.0
24 TraesCS3D01G456700 chr2B 90.559 286 23 4 360 643 209818134 209817851 3.000000e-100 375.0
25 TraesCS3D01G456700 chr2B 90.000 290 23 5 360 646 666034180 666033894 1.400000e-98 370.0
26 TraesCS3D01G456700 chr7B 89.796 294 23 6 360 649 715316307 715316597 1.400000e-98 370.0
27 TraesCS3D01G456700 chr1D 89.761 293 23 5 360 649 492402161 492402449 5.020000e-98 368.0
28 TraesCS3D01G456700 chr6D 83.408 223 32 4 949 1168 380452957 380452737 5.390000e-48 202.0
29 TraesCS3D01G456700 chr6D 79.235 183 29 5 2307 2488 25768151 25768325 5.590000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G456700 chr3D 562497580 562500767 3187 True 5888.0 5888 100.0000 1 3188 1 chr3D.!!$R2 3187
1 TraesCS3D01G456700 chr3D 562360507 562361760 1253 True 612.0 612 76.1650 915 2195 1 chr3D.!!$R1 1280
2 TraesCS3D01G456700 chr3A 697594807 697597106 2299 True 1675.5 2305 92.6925 853 3188 2 chr3A.!!$R2 2335
3 TraesCS3D01G456700 chr3A 708640847 708642136 1289 False 797.0 797 78.3000 908 2195 1 chr3A.!!$F2 1287
4 TraesCS3D01G456700 chr3B 749685699 749687060 1361 True 1912.0 1912 92.2630 1297 2640 1 chr3B.!!$R2 1343
5 TraesCS3D01G456700 chr3B 749697603 749698266 663 True 817.0 817 89.4740 660 1300 1 chr3B.!!$R3 640
6 TraesCS3D01G456700 chr3B 749653258 749654205 947 True 459.0 459 75.9880 1226 2195 1 chr3B.!!$R1 969
7 TraesCS3D01G456700 chr4A 276000724 276001616 892 True 1168.0 1168 90.4550 2302 3188 1 chr4A.!!$R1 886
8 TraesCS3D01G456700 chr7D 227704730 227705411 681 False 516.5 545 92.6090 2302 3015 2 chr7D.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 419 0.032815 GAGCTATCTTGGAGGTCCGC 59.967 60.0 0.0 0.0 39.43 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2260 0.037326 TTGCAGCTCTTGAGGGTACG 60.037 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.514458 GGGAAAAAGATGCAGAGGGA 57.486 50.000 0.00 0.00 0.00 4.20
20 21 2.373224 GGGAAAAAGATGCAGAGGGAG 58.627 52.381 0.00 0.00 0.00 4.30
21 22 2.291217 GGGAAAAAGATGCAGAGGGAGT 60.291 50.000 0.00 0.00 0.00 3.85
22 23 3.013219 GGAAAAAGATGCAGAGGGAGTC 58.987 50.000 0.00 0.00 0.00 3.36
23 24 2.797177 AAAAGATGCAGAGGGAGTCC 57.203 50.000 0.00 0.00 0.00 3.85
24 25 1.661463 AAAGATGCAGAGGGAGTCCA 58.339 50.000 12.30 0.00 34.83 4.02
25 26 1.890552 AAGATGCAGAGGGAGTCCAT 58.109 50.000 12.30 2.80 34.83 3.41
26 27 1.890552 AGATGCAGAGGGAGTCCATT 58.109 50.000 12.30 0.00 34.83 3.16
27 28 3.051940 AGATGCAGAGGGAGTCCATTA 57.948 47.619 12.30 0.00 34.83 1.90
28 29 2.971330 AGATGCAGAGGGAGTCCATTAG 59.029 50.000 12.30 1.63 34.83 1.73
29 30 2.254152 TGCAGAGGGAGTCCATTAGT 57.746 50.000 12.30 0.00 34.83 2.24
30 31 2.551270 TGCAGAGGGAGTCCATTAGTT 58.449 47.619 12.30 0.00 34.83 2.24
31 32 3.719871 TGCAGAGGGAGTCCATTAGTTA 58.280 45.455 12.30 0.00 34.83 2.24
32 33 3.706594 TGCAGAGGGAGTCCATTAGTTAG 59.293 47.826 12.30 0.00 34.83 2.34
33 34 3.493524 GCAGAGGGAGTCCATTAGTTAGC 60.494 52.174 12.30 0.00 34.83 3.09
34 35 3.706594 CAGAGGGAGTCCATTAGTTAGCA 59.293 47.826 12.30 0.00 34.83 3.49
35 36 4.346418 CAGAGGGAGTCCATTAGTTAGCAT 59.654 45.833 12.30 0.00 34.83 3.79
36 37 4.591072 AGAGGGAGTCCATTAGTTAGCATC 59.409 45.833 12.30 0.00 34.83 3.91
37 38 4.298626 AGGGAGTCCATTAGTTAGCATCA 58.701 43.478 12.30 0.00 34.83 3.07
38 39 4.910304 AGGGAGTCCATTAGTTAGCATCAT 59.090 41.667 12.30 0.00 34.83 2.45
39 40 4.999950 GGGAGTCCATTAGTTAGCATCATG 59.000 45.833 12.30 0.00 0.00 3.07
40 41 5.221722 GGGAGTCCATTAGTTAGCATCATGA 60.222 44.000 12.30 0.00 0.00 3.07
41 42 5.931146 GGAGTCCATTAGTTAGCATCATGAG 59.069 44.000 3.60 0.00 0.00 2.90
42 43 6.239430 GGAGTCCATTAGTTAGCATCATGAGA 60.239 42.308 3.60 0.00 0.00 3.27
43 44 7.313740 AGTCCATTAGTTAGCATCATGAGAT 57.686 36.000 0.09 0.00 33.87 2.75
44 45 8.427902 AGTCCATTAGTTAGCATCATGAGATA 57.572 34.615 0.09 0.00 31.88 1.98
45 46 9.044646 AGTCCATTAGTTAGCATCATGAGATAT 57.955 33.333 0.09 0.00 31.88 1.63
46 47 9.096160 GTCCATTAGTTAGCATCATGAGATATG 57.904 37.037 0.09 0.00 31.88 1.78
47 48 9.039165 TCCATTAGTTAGCATCATGAGATATGA 57.961 33.333 0.09 0.00 31.88 2.15
48 49 9.833917 CCATTAGTTAGCATCATGAGATATGAT 57.166 33.333 0.09 0.00 39.16 2.45
57 58 6.708285 CATCATGAGATATGATGTCTTCCCA 58.292 40.000 17.45 0.00 46.17 4.37
58 59 6.356186 TCATGAGATATGATGTCTTCCCAG 57.644 41.667 0.00 0.00 0.00 4.45
59 60 6.080009 TCATGAGATATGATGTCTTCCCAGA 58.920 40.000 0.00 0.00 0.00 3.86
60 61 6.556116 TCATGAGATATGATGTCTTCCCAGAA 59.444 38.462 0.00 0.00 0.00 3.02
61 62 6.813293 TGAGATATGATGTCTTCCCAGAAA 57.187 37.500 0.00 0.00 0.00 2.52
62 63 7.199167 TGAGATATGATGTCTTCCCAGAAAA 57.801 36.000 0.00 0.00 0.00 2.29
63 64 7.632861 TGAGATATGATGTCTTCCCAGAAAAA 58.367 34.615 0.00 0.00 0.00 1.94
64 65 8.277197 TGAGATATGATGTCTTCCCAGAAAAAT 58.723 33.333 0.00 0.00 0.00 1.82
65 66 9.784531 GAGATATGATGTCTTCCCAGAAAAATA 57.215 33.333 0.00 0.00 0.00 1.40
69 70 7.870509 TGATGTCTTCCCAGAAAAATATGAG 57.129 36.000 0.00 0.00 0.00 2.90
70 71 7.632861 TGATGTCTTCCCAGAAAAATATGAGA 58.367 34.615 0.00 0.00 0.00 3.27
71 72 8.108999 TGATGTCTTCCCAGAAAAATATGAGAA 58.891 33.333 0.00 0.00 0.00 2.87
72 73 8.884124 ATGTCTTCCCAGAAAAATATGAGAAA 57.116 30.769 0.00 0.00 0.00 2.52
73 74 8.884124 TGTCTTCCCAGAAAAATATGAGAAAT 57.116 30.769 0.00 0.00 0.00 2.17
74 75 8.742777 TGTCTTCCCAGAAAAATATGAGAAATG 58.257 33.333 0.00 0.00 0.00 2.32
75 76 8.743714 GTCTTCCCAGAAAAATATGAGAAATGT 58.256 33.333 0.00 0.00 0.00 2.71
76 77 8.742777 TCTTCCCAGAAAAATATGAGAAATGTG 58.257 33.333 0.00 0.00 0.00 3.21
77 78 8.421249 TTCCCAGAAAAATATGAGAAATGTGT 57.579 30.769 0.00 0.00 0.00 3.72
78 79 7.829725 TCCCAGAAAAATATGAGAAATGTGTG 58.170 34.615 0.00 0.00 0.00 3.82
79 80 7.037438 CCCAGAAAAATATGAGAAATGTGTGG 58.963 38.462 0.00 0.00 0.00 4.17
80 81 6.532657 CCAGAAAAATATGAGAAATGTGTGGC 59.467 38.462 0.00 0.00 0.00 5.01
81 82 7.318141 CAGAAAAATATGAGAAATGTGTGGCT 58.682 34.615 0.00 0.00 0.00 4.75
82 83 7.274904 CAGAAAAATATGAGAAATGTGTGGCTG 59.725 37.037 0.00 0.00 0.00 4.85
83 84 4.644103 AATATGAGAAATGTGTGGCTGC 57.356 40.909 0.00 0.00 0.00 5.25
84 85 2.211250 ATGAGAAATGTGTGGCTGCT 57.789 45.000 0.00 0.00 0.00 4.24
85 86 1.527034 TGAGAAATGTGTGGCTGCTC 58.473 50.000 0.00 0.00 0.00 4.26
86 87 1.072806 TGAGAAATGTGTGGCTGCTCT 59.927 47.619 0.00 0.00 0.00 4.09
87 88 1.736681 GAGAAATGTGTGGCTGCTCTC 59.263 52.381 0.00 0.00 0.00 3.20
88 89 0.445436 GAAATGTGTGGCTGCTCTCG 59.555 55.000 0.00 0.00 0.00 4.04
89 90 0.957395 AAATGTGTGGCTGCTCTCGG 60.957 55.000 0.00 0.00 0.00 4.63
90 91 2.116983 AATGTGTGGCTGCTCTCGGT 62.117 55.000 0.00 0.00 0.00 4.69
91 92 2.740055 GTGTGGCTGCTCTCGGTG 60.740 66.667 0.00 0.00 0.00 4.94
92 93 4.687215 TGTGGCTGCTCTCGGTGC 62.687 66.667 0.00 0.00 0.00 5.01
93 94 4.687215 GTGGCTGCTCTCGGTGCA 62.687 66.667 0.00 0.00 38.81 4.57
94 95 4.687215 TGGCTGCTCTCGGTGCAC 62.687 66.667 8.80 8.80 36.37 4.57
96 97 4.385405 GCTGCTCTCGGTGCACCT 62.385 66.667 32.28 0.00 36.37 4.00
97 98 3.006756 GCTGCTCTCGGTGCACCTA 62.007 63.158 32.28 21.87 36.37 3.08
98 99 1.153745 CTGCTCTCGGTGCACCTAC 60.154 63.158 32.28 17.07 36.37 3.18
99 100 1.877576 CTGCTCTCGGTGCACCTACA 61.878 60.000 32.28 20.32 36.37 2.74
100 101 1.446272 GCTCTCGGTGCACCTACAC 60.446 63.158 32.28 14.74 39.94 2.90
124 125 7.892609 ACCCAGGTGAATAGTAAAATCAAAAC 58.107 34.615 0.00 0.00 0.00 2.43
125 126 7.507616 ACCCAGGTGAATAGTAAAATCAAAACA 59.492 33.333 0.00 0.00 0.00 2.83
126 127 8.364142 CCCAGGTGAATAGTAAAATCAAAACAA 58.636 33.333 0.00 0.00 0.00 2.83
127 128 9.757227 CCAGGTGAATAGTAAAATCAAAACAAA 57.243 29.630 0.00 0.00 0.00 2.83
172 173 9.631257 AATTCTGAATTTTTGGGAAATCAAACT 57.369 25.926 9.76 0.00 36.49 2.66
173 174 9.631257 ATTCTGAATTTTTGGGAAATCAAACTT 57.369 25.926 0.00 0.00 36.49 2.66
174 175 8.436046 TCTGAATTTTTGGGAAATCAAACTTG 57.564 30.769 0.00 0.00 36.49 3.16
175 176 8.263640 TCTGAATTTTTGGGAAATCAAACTTGA 58.736 29.630 0.00 0.00 42.14 3.02
177 178 9.054922 TGAATTTTTGGGAAATCAAACTTGATC 57.945 29.630 5.44 0.00 46.60 2.92
178 179 8.977267 AATTTTTGGGAAATCAAACTTGATCA 57.023 26.923 5.44 0.00 46.60 2.92
179 180 8.977267 ATTTTTGGGAAATCAAACTTGATCAA 57.023 26.923 8.12 8.12 46.60 2.57
180 181 8.798859 TTTTTGGGAAATCAAACTTGATCAAA 57.201 26.923 9.88 8.56 46.60 2.69
181 182 8.977267 TTTTGGGAAATCAAACTTGATCAAAT 57.023 26.923 9.88 0.00 46.60 2.32
208 209 4.499037 AGGTACTTGCAAAATTTCGGTC 57.501 40.909 0.00 0.00 27.25 4.79
209 210 3.886505 AGGTACTTGCAAAATTTCGGTCA 59.113 39.130 0.00 0.00 27.25 4.02
210 211 3.978855 GGTACTTGCAAAATTTCGGTCAC 59.021 43.478 0.00 0.00 0.00 3.67
211 212 3.791973 ACTTGCAAAATTTCGGTCACA 57.208 38.095 0.00 0.00 0.00 3.58
212 213 4.116747 ACTTGCAAAATTTCGGTCACAA 57.883 36.364 0.00 0.00 0.00 3.33
213 214 4.499183 ACTTGCAAAATTTCGGTCACAAA 58.501 34.783 0.00 0.00 0.00 2.83
214 215 5.115480 ACTTGCAAAATTTCGGTCACAAAT 58.885 33.333 0.00 0.00 0.00 2.32
215 216 6.276847 ACTTGCAAAATTTCGGTCACAAATA 58.723 32.000 0.00 0.00 0.00 1.40
216 217 6.928492 ACTTGCAAAATTTCGGTCACAAATAT 59.072 30.769 0.00 0.00 0.00 1.28
217 218 6.942886 TGCAAAATTTCGGTCACAAATATC 57.057 33.333 0.00 0.00 0.00 1.63
218 219 5.570973 TGCAAAATTTCGGTCACAAATATCG 59.429 36.000 0.00 0.00 0.00 2.92
219 220 5.498542 GCAAAATTTCGGTCACAAATATCGC 60.499 40.000 0.00 0.00 0.00 4.58
220 221 3.963383 ATTTCGGTCACAAATATCGCC 57.037 42.857 0.00 0.00 0.00 5.54
221 222 2.388310 TTCGGTCACAAATATCGCCA 57.612 45.000 0.00 0.00 0.00 5.69
222 223 2.613026 TCGGTCACAAATATCGCCAT 57.387 45.000 0.00 0.00 0.00 4.40
223 224 2.912771 TCGGTCACAAATATCGCCATT 58.087 42.857 0.00 0.00 0.00 3.16
224 225 3.275143 TCGGTCACAAATATCGCCATTT 58.725 40.909 0.00 0.00 0.00 2.32
225 226 3.064682 TCGGTCACAAATATCGCCATTTG 59.935 43.478 15.70 15.70 46.66 2.32
226 227 3.705604 GGTCACAAATATCGCCATTTGG 58.294 45.455 19.29 11.79 45.91 3.28
227 228 3.490761 GGTCACAAATATCGCCATTTGGG 60.491 47.826 19.29 16.90 46.30 4.12
228 229 2.692557 TCACAAATATCGCCATTTGGGG 59.307 45.455 18.07 7.31 45.42 4.96
235 236 2.442830 GCCATTTGGGGAGGCCTC 60.443 66.667 25.59 25.59 42.58 4.70
236 237 3.099171 CCATTTGGGGAGGCCTCA 58.901 61.111 33.29 13.84 28.50 3.86
237 238 1.380380 CCATTTGGGGAGGCCTCAC 60.380 63.158 33.29 30.86 31.34 3.51
243 244 4.943373 GGGAGGCCTCACCAAAAA 57.057 55.556 33.29 0.00 43.14 1.94
266 267 9.474920 AAAAACAAAATCAATGCTTAGATTCGA 57.525 25.926 0.00 0.00 33.58 3.71
267 268 8.679288 AAACAAAATCAATGCTTAGATTCGAG 57.321 30.769 0.00 0.00 33.58 4.04
268 269 6.261118 ACAAAATCAATGCTTAGATTCGAGC 58.739 36.000 7.79 7.79 39.33 5.03
272 273 3.369381 TGCTTAGATTCGAGCAGCC 57.631 52.632 11.98 0.00 43.46 4.85
273 274 0.528466 TGCTTAGATTCGAGCAGCCG 60.528 55.000 11.98 0.00 43.46 5.52
274 275 1.826299 GCTTAGATTCGAGCAGCCGC 61.826 60.000 9.34 0.00 38.73 6.53
275 276 1.543941 CTTAGATTCGAGCAGCCGCG 61.544 60.000 0.00 0.00 45.49 6.46
292 293 3.865700 CGCACCTACGCTGATATGA 57.134 52.632 0.00 0.00 0.00 2.15
293 294 2.354109 CGCACCTACGCTGATATGAT 57.646 50.000 0.00 0.00 0.00 2.45
294 295 2.677199 CGCACCTACGCTGATATGATT 58.323 47.619 0.00 0.00 0.00 2.57
295 296 2.663602 CGCACCTACGCTGATATGATTC 59.336 50.000 0.00 0.00 0.00 2.52
296 297 3.612717 CGCACCTACGCTGATATGATTCT 60.613 47.826 0.00 0.00 0.00 2.40
297 298 3.923461 GCACCTACGCTGATATGATTCTC 59.077 47.826 0.00 0.00 0.00 2.87
298 299 4.162072 CACCTACGCTGATATGATTCTCG 58.838 47.826 0.00 0.00 0.00 4.04
299 300 3.175152 CCTACGCTGATATGATTCTCGC 58.825 50.000 0.00 0.00 0.00 5.03
300 301 3.119673 CCTACGCTGATATGATTCTCGCT 60.120 47.826 0.00 0.00 0.00 4.93
301 302 3.377346 ACGCTGATATGATTCTCGCTT 57.623 42.857 0.00 0.00 0.00 4.68
302 303 3.055591 ACGCTGATATGATTCTCGCTTG 58.944 45.455 0.00 0.00 0.00 4.01
303 304 2.411069 CGCTGATATGATTCTCGCTTGG 59.589 50.000 0.00 0.00 0.00 3.61
304 305 3.657634 GCTGATATGATTCTCGCTTGGA 58.342 45.455 0.00 0.00 0.00 3.53
305 306 3.679025 GCTGATATGATTCTCGCTTGGAG 59.321 47.826 0.00 0.00 44.58 3.86
306 307 4.798924 GCTGATATGATTCTCGCTTGGAGT 60.799 45.833 0.00 0.00 43.60 3.85
307 308 4.625028 TGATATGATTCTCGCTTGGAGTG 58.375 43.478 0.00 0.00 43.60 3.51
308 309 4.100035 TGATATGATTCTCGCTTGGAGTGT 59.900 41.667 0.00 0.00 43.60 3.55
309 310 5.301805 TGATATGATTCTCGCTTGGAGTGTA 59.698 40.000 0.00 0.00 43.60 2.90
310 311 4.679373 ATGATTCTCGCTTGGAGTGTAT 57.321 40.909 0.00 0.00 43.60 2.29
311 312 5.791336 ATGATTCTCGCTTGGAGTGTATA 57.209 39.130 0.00 0.00 43.60 1.47
312 313 4.933330 TGATTCTCGCTTGGAGTGTATAC 58.067 43.478 0.00 0.00 43.60 1.47
313 314 3.416119 TTCTCGCTTGGAGTGTATACG 57.584 47.619 0.00 0.00 43.60 3.06
314 315 2.362736 TCTCGCTTGGAGTGTATACGT 58.637 47.619 0.00 0.00 43.60 3.57
315 316 3.534554 TCTCGCTTGGAGTGTATACGTA 58.465 45.455 0.00 0.00 43.60 3.57
316 317 3.310774 TCTCGCTTGGAGTGTATACGTAC 59.689 47.826 0.00 0.00 43.60 3.67
317 318 2.355756 TCGCTTGGAGTGTATACGTACC 59.644 50.000 0.00 0.00 0.00 3.34
318 319 2.097954 CGCTTGGAGTGTATACGTACCA 59.902 50.000 0.00 9.58 0.00 3.25
319 320 3.703420 GCTTGGAGTGTATACGTACCAG 58.297 50.000 0.00 9.26 33.62 4.00
320 321 3.703420 CTTGGAGTGTATACGTACCAGC 58.297 50.000 0.00 0.00 33.62 4.85
321 322 1.672363 TGGAGTGTATACGTACCAGCG 59.328 52.381 0.00 0.00 37.94 5.18
322 323 1.598924 GGAGTGTATACGTACCAGCGC 60.599 57.143 0.00 0.00 34.88 5.92
323 324 0.383231 AGTGTATACGTACCAGCGCC 59.617 55.000 2.29 0.00 34.88 6.53
324 325 0.931662 GTGTATACGTACCAGCGCCG 60.932 60.000 2.29 1.74 34.88 6.46
325 326 1.356624 GTATACGTACCAGCGCCGT 59.643 57.895 12.95 12.95 38.53 5.68
326 327 0.658536 GTATACGTACCAGCGCCGTC 60.659 60.000 11.81 0.00 36.12 4.79
327 328 1.785041 TATACGTACCAGCGCCGTCC 61.785 60.000 11.81 0.00 36.12 4.79
329 330 4.508128 CGTACCAGCGCCGTCCAT 62.508 66.667 2.29 0.00 0.00 3.41
330 331 2.890474 GTACCAGCGCCGTCCATG 60.890 66.667 2.29 0.00 0.00 3.66
331 332 3.071837 TACCAGCGCCGTCCATGA 61.072 61.111 2.29 0.00 0.00 3.07
332 333 3.365291 TACCAGCGCCGTCCATGAC 62.365 63.158 2.29 0.00 0.00 3.06
336 337 4.891727 GCGCCGTCCATGACCGAT 62.892 66.667 0.00 0.00 0.00 4.18
337 338 2.961721 CGCCGTCCATGACCGATG 60.962 66.667 0.00 0.00 0.00 3.84
338 339 3.272334 GCCGTCCATGACCGATGC 61.272 66.667 0.00 0.00 0.00 3.91
339 340 2.186644 CCGTCCATGACCGATGCA 59.813 61.111 0.00 0.00 0.00 3.96
340 341 1.227645 CCGTCCATGACCGATGCAT 60.228 57.895 0.00 0.00 0.00 3.96
341 342 1.501337 CCGTCCATGACCGATGCATG 61.501 60.000 2.46 0.00 42.07 4.06
348 349 4.870221 CATGACCGATGCATGGTATATG 57.130 45.455 17.37 18.33 40.63 1.78
349 350 3.333029 TGACCGATGCATGGTATATGG 57.667 47.619 17.37 5.41 40.63 2.74
350 351 2.637382 TGACCGATGCATGGTATATGGT 59.363 45.455 17.37 8.08 40.63 3.55
351 352 3.002791 GACCGATGCATGGTATATGGTG 58.997 50.000 17.37 0.00 40.63 4.17
352 353 2.290260 ACCGATGCATGGTATATGGTGG 60.290 50.000 16.27 0.00 38.15 4.61
353 354 1.739466 CGATGCATGGTATATGGTGGC 59.261 52.381 2.46 0.00 0.00 5.01
354 355 2.094675 GATGCATGGTATATGGTGGCC 58.905 52.381 2.46 0.00 0.00 5.36
355 356 0.250684 TGCATGGTATATGGTGGCCG 60.251 55.000 0.00 0.00 0.00 6.13
356 357 0.250727 GCATGGTATATGGTGGCCGT 60.251 55.000 0.00 0.00 0.00 5.68
357 358 1.522668 CATGGTATATGGTGGCCGTG 58.477 55.000 0.00 0.00 0.00 4.94
358 359 0.400213 ATGGTATATGGTGGCCGTGG 59.600 55.000 0.00 0.00 0.00 4.94
359 360 1.599797 GGTATATGGTGGCCGTGGC 60.600 63.158 1.16 1.16 41.06 5.01
371 372 2.885644 CGTGGCCGGTCTGATTCG 60.886 66.667 7.97 0.52 0.00 3.34
372 373 2.264794 GTGGCCGGTCTGATTCGT 59.735 61.111 7.97 0.00 0.00 3.85
373 374 1.375523 GTGGCCGGTCTGATTCGTT 60.376 57.895 7.97 0.00 0.00 3.85
374 375 1.079405 TGGCCGGTCTGATTCGTTC 60.079 57.895 7.97 0.00 0.00 3.95
375 376 1.079405 GGCCGGTCTGATTCGTTCA 60.079 57.895 1.90 0.00 0.00 3.18
376 377 0.672401 GGCCGGTCTGATTCGTTCAA 60.672 55.000 1.90 0.00 32.78 2.69
377 378 0.442699 GCCGGTCTGATTCGTTCAAC 59.557 55.000 1.90 0.00 32.78 3.18
378 379 0.713883 CCGGTCTGATTCGTTCAACG 59.286 55.000 2.64 2.64 44.19 4.10
379 380 0.713883 CGGTCTGATTCGTTCAACGG 59.286 55.000 10.69 0.00 42.81 4.44
380 381 0.442699 GGTCTGATTCGTTCAACGGC 59.557 55.000 10.69 0.72 42.81 5.68
381 382 1.144969 GTCTGATTCGTTCAACGGCA 58.855 50.000 10.69 5.55 42.81 5.69
382 383 1.529438 GTCTGATTCGTTCAACGGCAA 59.471 47.619 10.69 0.00 42.81 4.52
383 384 2.159627 GTCTGATTCGTTCAACGGCAAT 59.840 45.455 10.69 3.11 42.81 3.56
384 385 2.811431 TCTGATTCGTTCAACGGCAATT 59.189 40.909 10.69 0.00 42.81 2.32
385 386 2.910482 CTGATTCGTTCAACGGCAATTG 59.090 45.455 10.69 0.00 42.81 2.32
386 387 2.292016 TGATTCGTTCAACGGCAATTGT 59.708 40.909 10.69 0.00 42.81 2.71
387 388 2.853731 TTCGTTCAACGGCAATTGTT 57.146 40.000 10.69 0.00 42.81 2.83
388 389 2.853731 TCGTTCAACGGCAATTGTTT 57.146 40.000 10.69 0.00 42.81 2.83
389 390 2.722071 TCGTTCAACGGCAATTGTTTC 58.278 42.857 10.69 0.00 42.81 2.78
390 391 2.097629 TCGTTCAACGGCAATTGTTTCA 59.902 40.909 10.69 0.00 42.81 2.69
391 392 3.049206 CGTTCAACGGCAATTGTTTCAT 58.951 40.909 0.61 0.00 38.08 2.57
392 393 3.119463 CGTTCAACGGCAATTGTTTCATC 59.881 43.478 0.61 0.00 38.08 2.92
393 394 4.298332 GTTCAACGGCAATTGTTTCATCT 58.702 39.130 7.40 0.00 0.00 2.90
394 395 4.582701 TCAACGGCAATTGTTTCATCTT 57.417 36.364 7.40 0.00 0.00 2.40
395 396 4.942852 TCAACGGCAATTGTTTCATCTTT 58.057 34.783 7.40 0.00 0.00 2.52
396 397 4.744137 TCAACGGCAATTGTTTCATCTTTG 59.256 37.500 7.40 0.86 0.00 2.77
397 398 3.652274 ACGGCAATTGTTTCATCTTTGG 58.348 40.909 7.40 0.00 0.00 3.28
398 399 3.069443 ACGGCAATTGTTTCATCTTTGGT 59.931 39.130 7.40 0.00 0.00 3.67
399 400 3.429543 CGGCAATTGTTTCATCTTTGGTG 59.570 43.478 7.40 0.00 0.00 4.17
400 401 4.630111 GGCAATTGTTTCATCTTTGGTGA 58.370 39.130 7.40 0.00 0.00 4.02
401 402 4.687483 GGCAATTGTTTCATCTTTGGTGAG 59.313 41.667 7.40 0.00 0.00 3.51
402 403 4.151157 GCAATTGTTTCATCTTTGGTGAGC 59.849 41.667 7.40 0.00 0.00 4.26
403 404 5.535333 CAATTGTTTCATCTTTGGTGAGCT 58.465 37.500 0.00 0.00 0.00 4.09
404 405 6.680810 CAATTGTTTCATCTTTGGTGAGCTA 58.319 36.000 0.00 0.00 0.00 3.32
405 406 7.318141 CAATTGTTTCATCTTTGGTGAGCTAT 58.682 34.615 0.00 0.00 0.00 2.97
406 407 6.500684 TTGTTTCATCTTTGGTGAGCTATC 57.499 37.500 0.00 0.00 0.00 2.08
407 408 5.809001 TGTTTCATCTTTGGTGAGCTATCT 58.191 37.500 0.00 0.00 0.00 1.98
408 409 6.240894 TGTTTCATCTTTGGTGAGCTATCTT 58.759 36.000 0.00 0.00 0.00 2.40
409 410 6.149973 TGTTTCATCTTTGGTGAGCTATCTTG 59.850 38.462 0.00 0.00 0.00 3.02
410 411 4.774124 TCATCTTTGGTGAGCTATCTTGG 58.226 43.478 0.00 0.00 0.00 3.61
411 412 4.471025 TCATCTTTGGTGAGCTATCTTGGA 59.529 41.667 0.00 0.00 0.00 3.53
412 413 4.478206 TCTTTGGTGAGCTATCTTGGAG 57.522 45.455 0.00 0.00 0.00 3.86
413 414 3.198635 TCTTTGGTGAGCTATCTTGGAGG 59.801 47.826 0.00 0.00 0.00 4.30
414 415 2.254152 TGGTGAGCTATCTTGGAGGT 57.746 50.000 0.00 0.00 0.00 3.85
415 416 2.111384 TGGTGAGCTATCTTGGAGGTC 58.889 52.381 0.00 0.00 40.97 3.85
416 417 1.414550 GGTGAGCTATCTTGGAGGTCC 59.585 57.143 0.00 0.00 40.07 4.46
417 418 1.067821 GTGAGCTATCTTGGAGGTCCG 59.932 57.143 0.00 0.00 40.07 4.79
418 419 0.032815 GAGCTATCTTGGAGGTCCGC 59.967 60.000 0.00 0.00 39.43 5.54
419 420 0.687757 AGCTATCTTGGAGGTCCGCA 60.688 55.000 0.00 0.00 39.43 5.69
420 421 0.178068 GCTATCTTGGAGGTCCGCAA 59.822 55.000 0.00 0.00 39.43 4.85
421 422 1.406887 GCTATCTTGGAGGTCCGCAAA 60.407 52.381 0.00 0.00 39.43 3.68
422 423 2.555199 CTATCTTGGAGGTCCGCAAAG 58.445 52.381 3.35 3.35 39.43 2.77
423 424 0.678048 ATCTTGGAGGTCCGCAAAGC 60.678 55.000 4.88 0.00 39.43 3.51
424 425 1.302832 CTTGGAGGTCCGCAAAGCT 60.303 57.895 0.00 0.00 39.43 3.74
425 426 1.580845 CTTGGAGGTCCGCAAAGCTG 61.581 60.000 0.00 0.00 39.43 4.24
426 427 3.435186 GGAGGTCCGCAAAGCTGC 61.435 66.667 0.00 0.00 45.75 5.25
439 440 3.624900 CAAAGCTGCATATCAACGATGG 58.375 45.455 1.02 0.00 0.00 3.51
440 441 2.916702 AGCTGCATATCAACGATGGA 57.083 45.000 1.02 0.00 0.00 3.41
441 442 2.763933 AGCTGCATATCAACGATGGAG 58.236 47.619 1.02 0.00 43.49 3.86
443 444 1.802960 CTGCATATCAACGATGGAGCC 59.197 52.381 0.00 0.00 36.19 4.70
444 445 0.792640 GCATATCAACGATGGAGCCG 59.207 55.000 0.00 0.00 0.00 5.52
445 446 0.792640 CATATCAACGATGGAGCCGC 59.207 55.000 0.00 0.00 0.00 6.53
446 447 0.667487 ATATCAACGATGGAGCCGCG 60.667 55.000 0.00 0.00 0.00 6.46
463 464 3.706373 GCCGAGCTTGGGTGAGGA 61.706 66.667 22.06 0.00 0.00 3.71
464 465 2.581354 CCGAGCTTGGGTGAGGAG 59.419 66.667 12.81 0.00 0.00 3.69
465 466 2.581354 CGAGCTTGGGTGAGGAGG 59.419 66.667 0.00 0.00 0.00 4.30
466 467 2.286523 CGAGCTTGGGTGAGGAGGT 61.287 63.158 0.00 0.00 0.00 3.85
467 468 1.298014 GAGCTTGGGTGAGGAGGTG 59.702 63.158 0.00 0.00 0.00 4.00
468 469 1.152030 AGCTTGGGTGAGGAGGTGA 60.152 57.895 0.00 0.00 0.00 4.02
469 470 0.548682 AGCTTGGGTGAGGAGGTGAT 60.549 55.000 0.00 0.00 0.00 3.06
470 471 0.107459 GCTTGGGTGAGGAGGTGATC 60.107 60.000 0.00 0.00 0.00 2.92
480 481 2.918712 GGAGGTGATCCGTCATTCAT 57.081 50.000 0.00 0.00 38.67 2.57
481 482 3.199880 GGAGGTGATCCGTCATTCATT 57.800 47.619 0.00 0.00 38.67 2.57
482 483 3.545703 GGAGGTGATCCGTCATTCATTT 58.454 45.455 0.00 0.00 38.67 2.32
483 484 3.561725 GGAGGTGATCCGTCATTCATTTC 59.438 47.826 0.00 0.00 38.67 2.17
484 485 4.446371 GAGGTGATCCGTCATTCATTTCT 58.554 43.478 0.00 0.00 36.60 2.52
485 486 4.848357 AGGTGATCCGTCATTCATTTCTT 58.152 39.130 0.00 0.00 36.60 2.52
486 487 4.878397 AGGTGATCCGTCATTCATTTCTTC 59.122 41.667 0.00 0.00 36.60 2.87
487 488 4.260375 GGTGATCCGTCATTCATTTCTTCG 60.260 45.833 0.00 0.00 36.60 3.79
488 489 3.871006 TGATCCGTCATTCATTTCTTCGG 59.129 43.478 0.00 0.00 38.16 4.30
489 490 3.328382 TCCGTCATTCATTTCTTCGGT 57.672 42.857 0.00 0.00 38.04 4.69
490 491 3.000041 TCCGTCATTCATTTCTTCGGTG 59.000 45.455 0.00 0.00 38.04 4.94
491 492 2.095853 CCGTCATTCATTTCTTCGGTGG 59.904 50.000 0.00 0.00 33.20 4.61
492 493 2.476185 CGTCATTCATTTCTTCGGTGGC 60.476 50.000 0.00 0.00 0.00 5.01
493 494 2.749621 GTCATTCATTTCTTCGGTGGCT 59.250 45.455 0.00 0.00 0.00 4.75
494 495 2.749076 TCATTCATTTCTTCGGTGGCTG 59.251 45.455 0.00 0.00 0.00 4.85
495 496 0.881118 TTCATTTCTTCGGTGGCTGC 59.119 50.000 0.00 0.00 0.00 5.25
496 497 0.036732 TCATTTCTTCGGTGGCTGCT 59.963 50.000 0.00 0.00 0.00 4.24
497 498 0.169672 CATTTCTTCGGTGGCTGCTG 59.830 55.000 0.00 0.00 0.00 4.41
498 499 0.250901 ATTTCTTCGGTGGCTGCTGT 60.251 50.000 0.00 0.00 0.00 4.40
499 500 1.165907 TTTCTTCGGTGGCTGCTGTG 61.166 55.000 0.00 0.00 0.00 3.66
500 501 3.052082 CTTCGGTGGCTGCTGTGG 61.052 66.667 0.00 0.00 0.00 4.17
501 502 3.832237 CTTCGGTGGCTGCTGTGGT 62.832 63.158 0.00 0.00 0.00 4.16
502 503 4.624364 TCGGTGGCTGCTGTGGTG 62.624 66.667 0.00 0.00 0.00 4.17
504 505 4.586235 GGTGGCTGCTGTGGTGGT 62.586 66.667 0.00 0.00 0.00 4.16
505 506 3.289834 GTGGCTGCTGTGGTGGTG 61.290 66.667 0.00 0.00 0.00 4.17
529 530 4.025401 GCAGGTGACGGGCGTTTG 62.025 66.667 0.00 0.00 0.00 2.93
530 531 2.590575 CAGGTGACGGGCGTTTGT 60.591 61.111 0.00 0.00 0.00 2.83
531 532 2.590575 AGGTGACGGGCGTTTGTG 60.591 61.111 0.00 0.00 0.00 3.33
532 533 2.898343 GGTGACGGGCGTTTGTGT 60.898 61.111 0.00 0.00 0.00 3.72
533 534 2.474612 GGTGACGGGCGTTTGTGTT 61.475 57.895 0.00 0.00 0.00 3.32
534 535 1.159098 GGTGACGGGCGTTTGTGTTA 61.159 55.000 0.00 0.00 0.00 2.41
535 536 0.656785 GTGACGGGCGTTTGTGTTAA 59.343 50.000 0.00 0.00 0.00 2.01
536 537 1.063764 GTGACGGGCGTTTGTGTTAAA 59.936 47.619 0.00 0.00 0.00 1.52
537 538 1.063764 TGACGGGCGTTTGTGTTAAAC 59.936 47.619 0.00 0.00 0.00 2.01
538 539 1.331447 GACGGGCGTTTGTGTTAAACT 59.669 47.619 0.00 0.00 0.00 2.66
539 540 1.744522 ACGGGCGTTTGTGTTAAACTT 59.255 42.857 0.00 0.00 0.00 2.66
540 541 2.941720 ACGGGCGTTTGTGTTAAACTTA 59.058 40.909 0.00 0.00 0.00 2.24
541 542 3.002553 ACGGGCGTTTGTGTTAAACTTAG 59.997 43.478 0.00 0.00 0.00 2.18
542 543 3.248125 CGGGCGTTTGTGTTAAACTTAGA 59.752 43.478 0.00 0.00 0.00 2.10
543 544 4.083696 CGGGCGTTTGTGTTAAACTTAGAT 60.084 41.667 0.00 0.00 0.00 1.98
544 545 5.120519 CGGGCGTTTGTGTTAAACTTAGATA 59.879 40.000 0.00 0.00 0.00 1.98
545 546 6.183360 CGGGCGTTTGTGTTAAACTTAGATAT 60.183 38.462 0.00 0.00 0.00 1.63
546 547 6.964934 GGGCGTTTGTGTTAAACTTAGATATG 59.035 38.462 0.00 0.00 0.00 1.78
547 548 7.361457 GGGCGTTTGTGTTAAACTTAGATATGT 60.361 37.037 0.00 0.00 0.00 2.29
548 549 8.019094 GGCGTTTGTGTTAAACTTAGATATGTT 58.981 33.333 0.00 0.00 0.00 2.71
549 550 9.047871 GCGTTTGTGTTAAACTTAGATATGTTC 57.952 33.333 0.00 0.00 0.00 3.18
553 554 9.502091 TTGTGTTAAACTTAGATATGTTCTGCT 57.498 29.630 0.00 0.00 35.79 4.24
566 567 9.678260 AGATATGTTCTGCTATCTTTTCAGTTT 57.322 29.630 0.00 0.00 32.08 2.66
569 570 7.333528 TGTTCTGCTATCTTTTCAGTTTTGT 57.666 32.000 0.00 0.00 0.00 2.83
570 571 7.417612 TGTTCTGCTATCTTTTCAGTTTTGTC 58.582 34.615 0.00 0.00 0.00 3.18
571 572 7.066887 TGTTCTGCTATCTTTTCAGTTTTGTCA 59.933 33.333 0.00 0.00 0.00 3.58
572 573 7.750229 TCTGCTATCTTTTCAGTTTTGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
573 574 7.587629 TCTGCTATCTTTTCAGTTTTGTCATG 58.412 34.615 0.00 0.00 0.00 3.07
574 575 7.229306 TCTGCTATCTTTTCAGTTTTGTCATGT 59.771 33.333 0.00 0.00 0.00 3.21
575 576 7.362662 TGCTATCTTTTCAGTTTTGTCATGTC 58.637 34.615 0.00 0.00 0.00 3.06
576 577 7.013178 TGCTATCTTTTCAGTTTTGTCATGTCA 59.987 33.333 0.00 0.00 0.00 3.58
577 578 7.536622 GCTATCTTTTCAGTTTTGTCATGTCAG 59.463 37.037 0.00 0.00 0.00 3.51
578 579 6.757897 TCTTTTCAGTTTTGTCATGTCAGT 57.242 33.333 0.00 0.00 0.00 3.41
579 580 6.785191 TCTTTTCAGTTTTGTCATGTCAGTC 58.215 36.000 0.00 0.00 0.00 3.51
580 581 5.499139 TTTCAGTTTTGTCATGTCAGTCC 57.501 39.130 0.00 0.00 0.00 3.85
581 582 4.422073 TCAGTTTTGTCATGTCAGTCCT 57.578 40.909 0.00 0.00 0.00 3.85
582 583 4.780815 TCAGTTTTGTCATGTCAGTCCTT 58.219 39.130 0.00 0.00 0.00 3.36
583 584 5.924356 TCAGTTTTGTCATGTCAGTCCTTA 58.076 37.500 0.00 0.00 0.00 2.69
584 585 5.758296 TCAGTTTTGTCATGTCAGTCCTTAC 59.242 40.000 0.00 0.00 0.00 2.34
585 586 4.750098 AGTTTTGTCATGTCAGTCCTTACG 59.250 41.667 0.00 0.00 0.00 3.18
586 587 4.330944 TTTGTCATGTCAGTCCTTACGT 57.669 40.909 0.00 0.00 0.00 3.57
587 588 3.297830 TGTCATGTCAGTCCTTACGTG 57.702 47.619 0.00 0.00 34.57 4.49
588 589 2.888414 TGTCATGTCAGTCCTTACGTGA 59.112 45.455 0.00 0.51 38.87 4.35
589 590 3.570926 TCATGTCAGTCCTTACGTGAC 57.429 47.619 0.00 0.00 40.89 3.67
590 591 3.154710 TCATGTCAGTCCTTACGTGACT 58.845 45.455 0.00 0.00 43.70 3.41
591 592 3.572682 TCATGTCAGTCCTTACGTGACTT 59.427 43.478 4.40 0.00 41.02 3.01
592 593 3.364889 TGTCAGTCCTTACGTGACTTG 57.635 47.619 4.40 2.16 41.02 3.16
593 594 2.691526 TGTCAGTCCTTACGTGACTTGT 59.308 45.455 4.40 0.00 41.02 3.16
594 595 3.884693 TGTCAGTCCTTACGTGACTTGTA 59.115 43.478 4.40 0.00 41.02 2.41
595 596 4.225208 GTCAGTCCTTACGTGACTTGTAC 58.775 47.826 4.40 1.35 41.02 2.90
596 597 4.023365 GTCAGTCCTTACGTGACTTGTACT 60.023 45.833 4.40 0.00 41.02 2.73
597 598 4.581824 TCAGTCCTTACGTGACTTGTACTT 59.418 41.667 4.40 0.00 41.02 2.24
598 599 5.068198 TCAGTCCTTACGTGACTTGTACTTT 59.932 40.000 4.40 0.00 41.02 2.66
599 600 5.751990 CAGTCCTTACGTGACTTGTACTTTT 59.248 40.000 4.40 0.00 41.02 2.27
600 601 6.257193 CAGTCCTTACGTGACTTGTACTTTTT 59.743 38.462 4.40 0.00 41.02 1.94
688 689 1.352622 TTGGAGGCTTGGACACAGGT 61.353 55.000 0.00 0.00 0.00 4.00
691 692 0.685097 GAGGCTTGGACACAGGTACA 59.315 55.000 0.00 0.00 35.56 2.90
694 695 0.107831 GCTTGGACACAGGTACACCA 59.892 55.000 0.38 0.00 37.67 4.17
696 697 0.105224 TTGGACACAGGTACACCACG 59.895 55.000 0.38 0.00 37.67 4.94
697 698 1.044231 TGGACACAGGTACACCACGT 61.044 55.000 0.38 0.00 38.89 4.49
698 699 0.105408 GGACACAGGTACACCACGTT 59.895 55.000 0.38 0.00 38.89 3.99
705 721 2.678836 CAGGTACACCACGTTTGAAACA 59.321 45.455 8.93 0.00 38.89 2.83
756 772 3.502595 CGCTCTCTCTTCCCATACGAATA 59.497 47.826 0.00 0.00 0.00 1.75
809 825 3.121738 TCCTTCTTCAACTTTCCGTCC 57.878 47.619 0.00 0.00 0.00 4.79
864 882 6.537301 GGTTTGTTGGATCGTATCTCATAACA 59.463 38.462 0.00 0.00 0.00 2.41
870 888 5.048434 TGGATCGTATCTCATAACAGCAGAG 60.048 44.000 0.00 0.00 0.00 3.35
1148 1181 3.402681 CCTCCTCGCCCACCATGT 61.403 66.667 0.00 0.00 0.00 3.21
1151 1184 3.716195 CCTCGCCCACCATGTCCA 61.716 66.667 0.00 0.00 0.00 4.02
1193 1226 1.402325 CGACGACTGCACCAACTATGA 60.402 52.381 0.00 0.00 0.00 2.15
1339 1375 1.945354 GATGAGGGTCGACTGCGGAA 61.945 60.000 16.46 0.00 38.28 4.30
1370 1406 4.180377 TCTCCTACTATCATCCGGTTGT 57.820 45.455 12.19 3.13 0.00 3.32
1390 1426 4.598894 CCTGCGATGGCCTCCTCG 62.599 72.222 15.65 15.65 38.85 4.63
1402 1438 2.033602 TCCTCGTCCTCTGCGTCA 59.966 61.111 0.00 0.00 0.00 4.35
1557 1593 5.324784 ACTCATACAAGCGTATCACAGAA 57.675 39.130 0.00 0.00 36.11 3.02
1580 1631 2.391821 GCGTCAAGATGCGTGTCG 59.608 61.111 0.00 0.00 33.23 4.35
1659 1724 1.067582 GCTGGGATTAGACGACCCG 59.932 63.158 0.00 0.00 45.91 5.28
1969 2034 6.570672 AGTATGATACATACATTCGGTCGT 57.429 37.500 19.39 0.00 0.00 4.34
2146 2211 5.295431 TGTTTCGCATACCTTCTTTCATG 57.705 39.130 0.00 0.00 0.00 3.07
2162 2227 5.994054 TCTTTCATGCACTAGAGGATTATGC 59.006 40.000 0.00 0.00 36.81 3.14
2164 2229 6.670695 TTCATGCACTAGAGGATTATGCTA 57.329 37.500 0.00 0.00 37.20 3.49
2199 2264 6.404712 CCTTTTATCTGAAGGTTGTCGTAC 57.595 41.667 0.00 0.00 39.05 3.67
2266 2331 4.039004 ACCAGCTTGTTTGTTGATGCATAA 59.961 37.500 0.00 0.00 0.00 1.90
2267 2332 4.989797 CCAGCTTGTTTGTTGATGCATAAA 59.010 37.500 0.00 0.00 0.00 1.40
2268 2333 5.640357 CCAGCTTGTTTGTTGATGCATAAAT 59.360 36.000 0.00 0.00 0.00 1.40
2269 2334 6.148150 CCAGCTTGTTTGTTGATGCATAAATT 59.852 34.615 0.00 0.00 0.00 1.82
2270 2335 7.308109 CCAGCTTGTTTGTTGATGCATAAATTT 60.308 33.333 0.00 0.00 0.00 1.82
2271 2336 8.071368 CAGCTTGTTTGTTGATGCATAAATTTT 58.929 29.630 0.00 0.00 0.00 1.82
2293 2358 2.988010 AATCACGAAGCTATGCCTGA 57.012 45.000 0.00 0.00 0.00 3.86
2339 2415 3.679389 TCCTTCCATGCTGAAGAAAGTC 58.321 45.455 11.91 0.00 43.60 3.01
2524 2606 1.264288 CCAAGCGTGTTGTTTCCTCTC 59.736 52.381 0.00 0.00 0.00 3.20
2574 2660 2.290260 TGTGTGGCAGTTTATCCTCCTG 60.290 50.000 0.00 0.00 0.00 3.86
2730 2817 2.270352 TCCTTGCCACAAGTTGTAGG 57.730 50.000 14.15 14.15 0.00 3.18
2844 2931 6.974932 TCTTCATCACTAGCAATTCTTCAC 57.025 37.500 0.00 0.00 0.00 3.18
2845 2932 5.877012 TCTTCATCACTAGCAATTCTTCACC 59.123 40.000 0.00 0.00 0.00 4.02
2917 3007 0.886490 CCGGCTGGATATCTGGCAAC 60.886 60.000 5.28 5.33 39.31 4.17
2918 3008 1.224069 CGGCTGGATATCTGGCAACG 61.224 60.000 17.34 11.21 39.31 4.10
2928 3020 2.591429 TGGCAACGCAGTGTCAGG 60.591 61.111 0.00 0.00 45.00 3.86
2983 3079 5.236478 AGGTCAAACTTACATGACTGAAACG 59.764 40.000 0.00 0.00 44.20 3.60
2985 3081 3.788434 AACTTACATGACTGAAACGCG 57.212 42.857 3.53 3.53 0.00 6.01
2994 3090 1.724623 GACTGAAACGCGTGCATTCTA 59.275 47.619 14.98 3.54 0.00 2.10
3046 3153 8.975663 TTGCACTACTAAGCTTAGTATCTAGA 57.024 34.615 35.18 22.63 43.22 2.43
3047 3154 8.975663 TGCACTACTAAGCTTAGTATCTAGAA 57.024 34.615 35.18 21.60 43.22 2.10
3048 3155 9.058174 TGCACTACTAAGCTTAGTATCTAGAAG 57.942 37.037 35.18 27.74 43.22 2.85
3049 3156 9.059260 GCACTACTAAGCTTAGTATCTAGAAGT 57.941 37.037 35.18 28.26 43.22 3.01
3096 3203 4.808364 GTGTTTTGCATTAGCCTTTTGTGA 59.192 37.500 0.00 0.00 41.13 3.58
3112 3219 5.867903 TTTGTGATGTGTTCCTTCCAAAT 57.132 34.783 0.00 0.00 0.00 2.32
3120 3227 2.627699 TGTTCCTTCCAAATGTTCCAGC 59.372 45.455 0.00 0.00 0.00 4.85
3124 3231 1.891150 CTTCCAAATGTTCCAGCAGCT 59.109 47.619 0.00 0.00 0.00 4.24
3136 3243 1.671261 CCAGCAGCTATAGATGGCGAC 60.671 57.143 19.11 2.91 39.47 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.291217 ACTCCCTCTGCATCTTTTTCCC 60.291 50.000 0.00 0.00 0.00 3.97
1 2 3.013219 GACTCCCTCTGCATCTTTTTCC 58.987 50.000 0.00 0.00 0.00 3.13
2 3 3.013219 GGACTCCCTCTGCATCTTTTTC 58.987 50.000 0.00 0.00 0.00 2.29
3 4 2.376518 TGGACTCCCTCTGCATCTTTTT 59.623 45.455 0.00 0.00 0.00 1.94
4 5 1.988107 TGGACTCCCTCTGCATCTTTT 59.012 47.619 0.00 0.00 0.00 2.27
5 6 1.661463 TGGACTCCCTCTGCATCTTT 58.339 50.000 0.00 0.00 0.00 2.52
6 7 1.890552 ATGGACTCCCTCTGCATCTT 58.109 50.000 0.00 0.00 0.00 2.40
7 8 1.890552 AATGGACTCCCTCTGCATCT 58.109 50.000 0.00 0.00 0.00 2.90
8 9 2.703007 ACTAATGGACTCCCTCTGCATC 59.297 50.000 0.00 0.00 0.00 3.91
9 10 2.769209 ACTAATGGACTCCCTCTGCAT 58.231 47.619 0.00 0.00 0.00 3.96
10 11 2.254152 ACTAATGGACTCCCTCTGCA 57.746 50.000 0.00 0.00 0.00 4.41
11 12 3.493524 GCTAACTAATGGACTCCCTCTGC 60.494 52.174 0.00 0.00 0.00 4.26
12 13 3.706594 TGCTAACTAATGGACTCCCTCTG 59.293 47.826 0.00 0.00 0.00 3.35
13 14 3.995636 TGCTAACTAATGGACTCCCTCT 58.004 45.455 0.00 0.00 0.00 3.69
14 15 4.345257 TGATGCTAACTAATGGACTCCCTC 59.655 45.833 0.00 0.00 0.00 4.30
15 16 4.298626 TGATGCTAACTAATGGACTCCCT 58.701 43.478 0.00 0.00 0.00 4.20
16 17 4.689612 TGATGCTAACTAATGGACTCCC 57.310 45.455 0.00 0.00 0.00 4.30
17 18 5.858381 TCATGATGCTAACTAATGGACTCC 58.142 41.667 0.00 0.00 0.00 3.85
18 19 6.753180 TCTCATGATGCTAACTAATGGACTC 58.247 40.000 0.00 0.00 0.00 3.36
19 20 6.737720 TCTCATGATGCTAACTAATGGACT 57.262 37.500 0.00 0.00 0.00 3.85
20 21 9.096160 CATATCTCATGATGCTAACTAATGGAC 57.904 37.037 0.00 0.00 34.32 4.02
21 22 9.039165 TCATATCTCATGATGCTAACTAATGGA 57.961 33.333 0.00 0.00 34.32 3.41
22 23 9.833917 ATCATATCTCATGATGCTAACTAATGG 57.166 33.333 0.00 0.00 37.37 3.16
34 35 6.729569 TCTGGGAAGACATCATATCTCATGAT 59.270 38.462 0.00 0.00 39.16 2.45
35 36 6.080009 TCTGGGAAGACATCATATCTCATGA 58.920 40.000 0.00 0.00 0.00 3.07
36 37 6.356186 TCTGGGAAGACATCATATCTCATG 57.644 41.667 0.00 0.00 0.00 3.07
37 38 7.384524 TTTCTGGGAAGACATCATATCTCAT 57.615 36.000 0.00 0.00 0.00 2.90
38 39 6.813293 TTTCTGGGAAGACATCATATCTCA 57.187 37.500 0.00 0.00 0.00 3.27
39 40 8.688747 ATTTTTCTGGGAAGACATCATATCTC 57.311 34.615 0.00 0.00 0.00 2.75
43 44 9.565090 CTCATATTTTTCTGGGAAGACATCATA 57.435 33.333 0.00 0.00 0.00 2.15
44 45 8.277197 TCTCATATTTTTCTGGGAAGACATCAT 58.723 33.333 0.00 0.00 0.00 2.45
45 46 7.632861 TCTCATATTTTTCTGGGAAGACATCA 58.367 34.615 0.00 0.00 0.00 3.07
46 47 8.511604 TTCTCATATTTTTCTGGGAAGACATC 57.488 34.615 0.00 0.00 28.80 3.06
47 48 8.884124 TTTCTCATATTTTTCTGGGAAGACAT 57.116 30.769 0.00 0.00 33.60 3.06
48 49 8.742777 CATTTCTCATATTTTTCTGGGAAGACA 58.257 33.333 0.00 0.00 33.60 3.41
49 50 8.743714 ACATTTCTCATATTTTTCTGGGAAGAC 58.256 33.333 0.00 0.00 33.60 3.01
50 51 8.742777 CACATTTCTCATATTTTTCTGGGAAGA 58.257 33.333 0.00 0.00 33.60 2.87
51 52 8.526147 ACACATTTCTCATATTTTTCTGGGAAG 58.474 33.333 0.00 0.00 33.60 3.46
52 53 8.306038 CACACATTTCTCATATTTTTCTGGGAA 58.694 33.333 0.00 0.00 30.12 3.97
53 54 7.093814 CCACACATTTCTCATATTTTTCTGGGA 60.094 37.037 0.00 0.00 0.00 4.37
54 55 7.037438 CCACACATTTCTCATATTTTTCTGGG 58.963 38.462 0.00 0.00 0.00 4.45
55 56 6.532657 GCCACACATTTCTCATATTTTTCTGG 59.467 38.462 0.00 0.00 0.00 3.86
56 57 7.274904 CAGCCACACATTTCTCATATTTTTCTG 59.725 37.037 0.00 0.00 0.00 3.02
57 58 7.318141 CAGCCACACATTTCTCATATTTTTCT 58.682 34.615 0.00 0.00 0.00 2.52
58 59 6.035327 GCAGCCACACATTTCTCATATTTTTC 59.965 38.462 0.00 0.00 0.00 2.29
59 60 5.870978 GCAGCCACACATTTCTCATATTTTT 59.129 36.000 0.00 0.00 0.00 1.94
60 61 5.186409 AGCAGCCACACATTTCTCATATTTT 59.814 36.000 0.00 0.00 0.00 1.82
61 62 4.708421 AGCAGCCACACATTTCTCATATTT 59.292 37.500 0.00 0.00 0.00 1.40
62 63 4.275810 AGCAGCCACACATTTCTCATATT 58.724 39.130 0.00 0.00 0.00 1.28
63 64 3.881688 GAGCAGCCACACATTTCTCATAT 59.118 43.478 0.00 0.00 0.00 1.78
64 65 3.054875 AGAGCAGCCACACATTTCTCATA 60.055 43.478 0.00 0.00 0.00 2.15
65 66 2.089980 GAGCAGCCACACATTTCTCAT 58.910 47.619 0.00 0.00 0.00 2.90
66 67 1.072806 AGAGCAGCCACACATTTCTCA 59.927 47.619 0.00 0.00 0.00 3.27
67 68 1.736681 GAGAGCAGCCACACATTTCTC 59.263 52.381 0.00 0.00 0.00 2.87
68 69 1.818642 GAGAGCAGCCACACATTTCT 58.181 50.000 0.00 0.00 0.00 2.52
69 70 0.445436 CGAGAGCAGCCACACATTTC 59.555 55.000 0.00 0.00 0.00 2.17
70 71 0.957395 CCGAGAGCAGCCACACATTT 60.957 55.000 0.00 0.00 0.00 2.32
71 72 1.376424 CCGAGAGCAGCCACACATT 60.376 57.895 0.00 0.00 0.00 2.71
72 73 2.267006 CCGAGAGCAGCCACACAT 59.733 61.111 0.00 0.00 0.00 3.21
73 74 3.233980 ACCGAGAGCAGCCACACA 61.234 61.111 0.00 0.00 0.00 3.72
74 75 2.740055 CACCGAGAGCAGCCACAC 60.740 66.667 0.00 0.00 0.00 3.82
75 76 4.687215 GCACCGAGAGCAGCCACA 62.687 66.667 0.00 0.00 0.00 4.17
76 77 4.687215 TGCACCGAGAGCAGCCAC 62.687 66.667 0.00 0.00 37.02 5.01
77 78 4.687215 GTGCACCGAGAGCAGCCA 62.687 66.667 5.22 0.00 43.63 4.75
80 81 1.153745 GTAGGTGCACCGAGAGCAG 60.154 63.158 29.68 0.00 43.63 4.24
81 82 1.906333 TGTAGGTGCACCGAGAGCA 60.906 57.895 29.68 20.47 42.08 4.26
82 83 1.446272 GTGTAGGTGCACCGAGAGC 60.446 63.158 29.68 18.31 42.08 4.09
83 84 4.891566 GTGTAGGTGCACCGAGAG 57.108 61.111 29.68 0.00 42.08 3.20
94 95 5.687166 TTTACTATTCACCTGGGTGTAGG 57.313 43.478 17.87 9.26 45.55 3.18
95 96 7.335627 TGATTTTACTATTCACCTGGGTGTAG 58.664 38.462 17.87 15.01 45.55 2.74
96 97 7.260387 TGATTTTACTATTCACCTGGGTGTA 57.740 36.000 17.87 10.22 45.55 2.90
97 98 6.134535 TGATTTTACTATTCACCTGGGTGT 57.865 37.500 17.87 4.19 45.55 4.16
98 99 7.461182 TTTGATTTTACTATTCACCTGGGTG 57.539 36.000 13.12 13.12 46.64 4.61
99 100 7.507616 TGTTTTGATTTTACTATTCACCTGGGT 59.492 33.333 0.00 0.00 0.00 4.51
100 101 7.891561 TGTTTTGATTTTACTATTCACCTGGG 58.108 34.615 0.00 0.00 0.00 4.45
101 102 9.757227 TTTGTTTTGATTTTACTATTCACCTGG 57.243 29.630 0.00 0.00 0.00 4.45
146 147 9.631257 AGTTTGATTTCCCAAAAATTCAGAATT 57.369 25.926 2.20 2.20 37.72 2.17
147 148 9.631257 AAGTTTGATTTCCCAAAAATTCAGAAT 57.369 25.926 0.00 0.00 37.72 2.40
148 149 8.891720 CAAGTTTGATTTCCCAAAAATTCAGAA 58.108 29.630 0.00 0.00 37.72 3.02
149 150 8.263640 TCAAGTTTGATTTCCCAAAAATTCAGA 58.736 29.630 0.00 0.00 37.72 3.27
150 151 8.436046 TCAAGTTTGATTTCCCAAAAATTCAG 57.564 30.769 0.00 0.00 37.72 3.02
151 152 8.977267 ATCAAGTTTGATTTCCCAAAAATTCA 57.023 26.923 1.58 0.00 45.13 2.57
180 181 9.581099 CCGAAATTTTGCAAGTACCTTAAATAT 57.419 29.630 0.00 0.00 0.00 1.28
181 182 8.578151 ACCGAAATTTTGCAAGTACCTTAAATA 58.422 29.630 0.00 0.00 0.00 1.40
182 183 7.438564 ACCGAAATTTTGCAAGTACCTTAAAT 58.561 30.769 0.00 0.00 0.00 1.40
183 184 6.807789 ACCGAAATTTTGCAAGTACCTTAAA 58.192 32.000 0.00 0.00 0.00 1.52
184 185 6.039493 TGACCGAAATTTTGCAAGTACCTTAA 59.961 34.615 0.00 0.00 0.00 1.85
185 186 5.531659 TGACCGAAATTTTGCAAGTACCTTA 59.468 36.000 0.00 0.00 0.00 2.69
186 187 4.339814 TGACCGAAATTTTGCAAGTACCTT 59.660 37.500 0.00 0.00 0.00 3.50
187 188 3.886505 TGACCGAAATTTTGCAAGTACCT 59.113 39.130 0.00 0.00 0.00 3.08
188 189 3.978855 GTGACCGAAATTTTGCAAGTACC 59.021 43.478 0.00 0.00 0.00 3.34
189 190 4.602995 TGTGACCGAAATTTTGCAAGTAC 58.397 39.130 0.00 0.00 0.00 2.73
190 191 4.902443 TGTGACCGAAATTTTGCAAGTA 57.098 36.364 0.00 0.00 0.00 2.24
191 192 3.791973 TGTGACCGAAATTTTGCAAGT 57.208 38.095 0.00 0.00 0.00 3.16
192 193 5.655893 ATTTGTGACCGAAATTTTGCAAG 57.344 34.783 0.00 0.00 0.00 4.01
193 194 6.088749 CGATATTTGTGACCGAAATTTTGCAA 59.911 34.615 0.00 0.00 0.00 4.08
194 195 5.570973 CGATATTTGTGACCGAAATTTTGCA 59.429 36.000 0.00 0.00 0.00 4.08
195 196 5.498542 GCGATATTTGTGACCGAAATTTTGC 60.499 40.000 0.00 0.00 29.60 3.68
196 197 5.004345 GGCGATATTTGTGACCGAAATTTTG 59.996 40.000 0.00 0.00 0.00 2.44
197 198 5.099575 GGCGATATTTGTGACCGAAATTTT 58.900 37.500 0.00 0.00 0.00 1.82
198 199 4.156922 TGGCGATATTTGTGACCGAAATTT 59.843 37.500 0.00 0.00 0.00 1.82
199 200 3.692101 TGGCGATATTTGTGACCGAAATT 59.308 39.130 0.00 0.00 0.00 1.82
200 201 3.275143 TGGCGATATTTGTGACCGAAAT 58.725 40.909 0.00 0.00 0.00 2.17
201 202 2.701107 TGGCGATATTTGTGACCGAAA 58.299 42.857 0.00 0.00 0.00 3.46
202 203 2.388310 TGGCGATATTTGTGACCGAA 57.612 45.000 0.00 0.00 0.00 4.30
203 204 2.613026 ATGGCGATATTTGTGACCGA 57.387 45.000 0.00 0.00 0.00 4.69
204 205 3.362295 CAAATGGCGATATTTGTGACCG 58.638 45.455 13.49 0.00 41.10 4.79
205 206 3.490761 CCCAAATGGCGATATTTGTGACC 60.491 47.826 17.76 0.00 43.28 4.02
206 207 3.490761 CCCCAAATGGCGATATTTGTGAC 60.491 47.826 17.76 0.00 43.28 3.67
207 208 2.692557 CCCCAAATGGCGATATTTGTGA 59.307 45.455 17.76 0.00 43.28 3.58
208 209 2.692557 TCCCCAAATGGCGATATTTGTG 59.307 45.455 17.76 10.39 43.28 3.33
209 210 2.958355 CTCCCCAAATGGCGATATTTGT 59.042 45.455 17.76 0.00 43.28 2.83
210 211 2.297033 CCTCCCCAAATGGCGATATTTG 59.703 50.000 14.33 14.33 44.01 2.32
211 212 2.597455 CCTCCCCAAATGGCGATATTT 58.403 47.619 0.00 0.00 0.00 1.40
212 213 1.823250 GCCTCCCCAAATGGCGATATT 60.823 52.381 0.00 0.00 37.11 1.28
213 214 0.251341 GCCTCCCCAAATGGCGATAT 60.251 55.000 0.00 0.00 37.11 1.63
214 215 1.150536 GCCTCCCCAAATGGCGATA 59.849 57.895 0.00 0.00 37.11 2.92
215 216 2.123726 GCCTCCCCAAATGGCGAT 60.124 61.111 0.00 0.00 37.11 4.58
216 217 4.440829 GGCCTCCCCAAATGGCGA 62.441 66.667 0.00 0.00 46.97 5.54
217 218 4.447342 AGGCCTCCCCAAATGGCG 62.447 66.667 0.00 0.00 46.97 5.69
218 219 2.442830 GAGGCCTCCCCAAATGGC 60.443 66.667 23.19 0.00 45.42 4.40
219 220 1.380380 GTGAGGCCTCCCCAAATGG 60.380 63.158 29.95 0.00 35.39 3.16
220 221 1.380380 GGTGAGGCCTCCCCAAATG 60.380 63.158 27.73 0.00 35.39 2.32
221 222 1.442886 TTGGTGAGGCCTCCCCAAAT 61.443 55.000 38.31 1.22 42.67 2.32
222 223 2.088096 TTGGTGAGGCCTCCCCAAA 61.088 57.895 38.31 25.03 42.67 3.28
223 224 1.660019 TTTTGGTGAGGCCTCCCCAA 61.660 55.000 37.26 37.26 43.65 4.12
224 225 1.660019 TTTTTGGTGAGGCCTCCCCA 61.660 55.000 30.96 30.96 35.32 4.96
225 226 1.155155 TTTTTGGTGAGGCCTCCCC 59.845 57.895 29.95 28.05 38.35 4.81
226 227 4.943373 TTTTTGGTGAGGCCTCCC 57.057 55.556 29.95 27.40 38.35 4.30
240 241 9.474920 TCGAATCTAAGCATTGATTTTGTTTTT 57.525 25.926 0.40 0.00 33.60 1.94
241 242 9.132521 CTCGAATCTAAGCATTGATTTTGTTTT 57.867 29.630 0.40 0.00 33.60 2.43
242 243 7.274250 GCTCGAATCTAAGCATTGATTTTGTTT 59.726 33.333 0.40 0.00 38.42 2.83
243 244 6.749118 GCTCGAATCTAAGCATTGATTTTGTT 59.251 34.615 0.40 0.00 38.42 2.83
244 245 6.127925 TGCTCGAATCTAAGCATTGATTTTGT 60.128 34.615 3.54 0.00 43.30 2.83
245 246 6.260377 TGCTCGAATCTAAGCATTGATTTTG 58.740 36.000 3.54 0.00 43.30 2.44
246 247 6.441093 TGCTCGAATCTAAGCATTGATTTT 57.559 33.333 3.54 0.00 43.30 1.82
247 248 5.505324 GCTGCTCGAATCTAAGCATTGATTT 60.505 40.000 7.48 0.00 46.69 2.17
248 249 4.024218 GCTGCTCGAATCTAAGCATTGATT 60.024 41.667 7.48 0.00 46.69 2.57
249 250 3.497640 GCTGCTCGAATCTAAGCATTGAT 59.502 43.478 7.48 0.00 46.69 2.57
250 251 2.868583 GCTGCTCGAATCTAAGCATTGA 59.131 45.455 7.48 0.00 46.69 2.57
251 252 2.032204 GGCTGCTCGAATCTAAGCATTG 60.032 50.000 7.48 0.25 46.69 2.82
252 253 2.216898 GGCTGCTCGAATCTAAGCATT 58.783 47.619 7.48 0.00 46.69 3.56
253 254 1.871408 CGGCTGCTCGAATCTAAGCAT 60.871 52.381 7.48 0.00 46.69 3.79
254 255 0.528466 CGGCTGCTCGAATCTAAGCA 60.528 55.000 0.00 6.93 45.83 3.91
255 256 1.826299 GCGGCTGCTCGAATCTAAGC 61.826 60.000 11.21 0.00 38.39 3.09
256 257 1.543941 CGCGGCTGCTCGAATCTAAG 61.544 60.000 17.03 0.00 39.65 2.18
257 258 1.588932 CGCGGCTGCTCGAATCTAA 60.589 57.895 17.03 0.00 39.65 2.10
258 259 2.026157 CGCGGCTGCTCGAATCTA 59.974 61.111 17.03 0.00 39.65 1.98
274 275 5.427848 GAGAATCATATCAGCGTAGGTGCG 61.428 50.000 0.00 0.00 46.62 5.34
275 276 3.923461 GAGAATCATATCAGCGTAGGTGC 59.077 47.826 0.00 0.00 46.62 5.01
277 278 3.366476 GCGAGAATCATATCAGCGTAGGT 60.366 47.826 0.00 0.00 33.38 3.08
278 279 3.119673 AGCGAGAATCATATCAGCGTAGG 60.120 47.826 0.00 0.00 33.17 3.18
279 280 4.090138 AGCGAGAATCATATCAGCGTAG 57.910 45.455 0.00 0.00 33.17 3.51
280 281 4.229876 CAAGCGAGAATCATATCAGCGTA 58.770 43.478 0.00 0.00 33.17 4.42
281 282 3.055591 CAAGCGAGAATCATATCAGCGT 58.944 45.455 0.00 0.00 33.17 5.07
282 283 2.411069 CCAAGCGAGAATCATATCAGCG 59.589 50.000 0.00 0.00 33.17 5.18
283 284 3.657634 TCCAAGCGAGAATCATATCAGC 58.342 45.455 0.00 0.00 33.17 4.26
284 285 4.685165 CACTCCAAGCGAGAATCATATCAG 59.315 45.833 0.00 0.00 41.63 2.90
285 286 4.100035 ACACTCCAAGCGAGAATCATATCA 59.900 41.667 0.00 0.00 41.63 2.15
286 287 4.626042 ACACTCCAAGCGAGAATCATATC 58.374 43.478 0.00 0.00 41.63 1.63
287 288 4.679373 ACACTCCAAGCGAGAATCATAT 57.321 40.909 0.00 0.00 41.63 1.78
288 289 5.791336 ATACACTCCAAGCGAGAATCATA 57.209 39.130 0.00 0.00 41.63 2.15
289 290 4.679373 ATACACTCCAAGCGAGAATCAT 57.321 40.909 0.00 0.00 41.63 2.45
290 291 4.497507 CGTATACACTCCAAGCGAGAATCA 60.498 45.833 3.32 0.00 41.63 2.57
291 292 3.975670 CGTATACACTCCAAGCGAGAATC 59.024 47.826 3.32 0.00 41.63 2.52
292 293 3.380637 ACGTATACACTCCAAGCGAGAAT 59.619 43.478 3.32 0.00 41.63 2.40
293 294 2.751259 ACGTATACACTCCAAGCGAGAA 59.249 45.455 3.32 0.00 41.63 2.87
294 295 2.362736 ACGTATACACTCCAAGCGAGA 58.637 47.619 3.32 0.00 41.63 4.04
295 296 2.846039 ACGTATACACTCCAAGCGAG 57.154 50.000 3.32 0.00 44.95 5.03
296 297 2.355756 GGTACGTATACACTCCAAGCGA 59.644 50.000 0.00 0.00 32.40 4.93
297 298 2.097954 TGGTACGTATACACTCCAAGCG 59.902 50.000 0.00 0.00 32.40 4.68
298 299 3.703420 CTGGTACGTATACACTCCAAGC 58.297 50.000 0.00 0.00 32.40 4.01
299 300 3.703420 GCTGGTACGTATACACTCCAAG 58.297 50.000 0.00 3.90 32.40 3.61
300 301 2.097954 CGCTGGTACGTATACACTCCAA 59.902 50.000 0.00 0.00 32.40 3.53
301 302 1.672363 CGCTGGTACGTATACACTCCA 59.328 52.381 0.00 6.69 32.40 3.86
302 303 1.598924 GCGCTGGTACGTATACACTCC 60.599 57.143 0.00 2.36 32.40 3.85
303 304 1.598924 GGCGCTGGTACGTATACACTC 60.599 57.143 7.64 0.00 32.40 3.51
304 305 0.383231 GGCGCTGGTACGTATACACT 59.617 55.000 7.64 0.00 32.40 3.55
305 306 0.931662 CGGCGCTGGTACGTATACAC 60.932 60.000 8.83 0.00 32.40 2.90
306 307 1.356270 CGGCGCTGGTACGTATACA 59.644 57.895 8.83 0.35 32.40 2.29
307 308 0.658536 GACGGCGCTGGTACGTATAC 60.659 60.000 22.44 0.00 41.40 1.47
308 309 1.648720 GACGGCGCTGGTACGTATA 59.351 57.895 22.44 0.00 41.40 1.47
309 310 2.410469 GACGGCGCTGGTACGTAT 59.590 61.111 22.44 0.00 41.40 3.06
310 311 3.814268 GGACGGCGCTGGTACGTA 61.814 66.667 22.44 0.00 41.40 3.57
312 313 4.508128 ATGGACGGCGCTGGTACG 62.508 66.667 22.44 11.55 0.00 3.67
313 314 2.890474 CATGGACGGCGCTGGTAC 60.890 66.667 22.44 14.10 0.00 3.34
314 315 3.071837 TCATGGACGGCGCTGGTA 61.072 61.111 22.44 6.48 0.00 3.25
315 316 4.760047 GTCATGGACGGCGCTGGT 62.760 66.667 22.44 13.03 0.00 4.00
319 320 4.891727 ATCGGTCATGGACGGCGC 62.892 66.667 6.90 0.00 33.78 6.53
320 321 2.961721 CATCGGTCATGGACGGCG 60.962 66.667 4.80 4.80 33.78 6.46
321 322 3.272334 GCATCGGTCATGGACGGC 61.272 66.667 9.48 3.61 33.78 5.68
322 323 1.227645 ATGCATCGGTCATGGACGG 60.228 57.895 0.00 0.00 35.30 4.79
323 324 1.936658 CATGCATCGGTCATGGACG 59.063 57.895 0.00 0.00 35.30 4.79
327 328 3.624410 CCATATACCATGCATCGGTCATG 59.376 47.826 19.83 20.57 40.60 3.07
328 329 3.264193 ACCATATACCATGCATCGGTCAT 59.736 43.478 19.83 13.44 37.99 3.06
329 330 2.637382 ACCATATACCATGCATCGGTCA 59.363 45.455 19.83 12.14 37.99 4.02
330 331 3.002791 CACCATATACCATGCATCGGTC 58.997 50.000 19.83 0.00 37.99 4.79
331 332 2.290260 CCACCATATACCATGCATCGGT 60.290 50.000 20.03 20.03 40.73 4.69
332 333 2.358957 CCACCATATACCATGCATCGG 58.641 52.381 12.06 12.06 0.00 4.18
333 334 1.739466 GCCACCATATACCATGCATCG 59.261 52.381 0.00 0.00 0.00 3.84
334 335 2.094675 GGCCACCATATACCATGCATC 58.905 52.381 0.00 0.00 0.00 3.91
335 336 1.614051 CGGCCACCATATACCATGCAT 60.614 52.381 2.24 0.00 0.00 3.96
336 337 0.250684 CGGCCACCATATACCATGCA 60.251 55.000 2.24 0.00 0.00 3.96
337 338 0.250727 ACGGCCACCATATACCATGC 60.251 55.000 2.24 0.00 0.00 4.06
338 339 1.522668 CACGGCCACCATATACCATG 58.477 55.000 2.24 0.00 0.00 3.66
339 340 0.400213 CCACGGCCACCATATACCAT 59.600 55.000 2.24 0.00 0.00 3.55
340 341 1.833606 CCACGGCCACCATATACCA 59.166 57.895 2.24 0.00 0.00 3.25
341 342 1.599797 GCCACGGCCACCATATACC 60.600 63.158 2.24 0.00 34.56 2.73
342 343 4.058797 GCCACGGCCACCATATAC 57.941 61.111 2.24 0.00 34.56 1.47
354 355 2.885644 CGAATCAGACCGGCCACG 60.886 66.667 0.00 0.00 40.55 4.94
355 356 1.359459 GAACGAATCAGACCGGCCAC 61.359 60.000 0.00 0.00 0.00 5.01
356 357 1.079405 GAACGAATCAGACCGGCCA 60.079 57.895 0.00 0.00 0.00 5.36
357 358 0.672401 TTGAACGAATCAGACCGGCC 60.672 55.000 0.00 0.00 39.77 6.13
358 359 0.442699 GTTGAACGAATCAGACCGGC 59.557 55.000 0.00 0.00 39.77 6.13
359 360 0.713883 CGTTGAACGAATCAGACCGG 59.286 55.000 13.13 0.00 46.05 5.28
360 361 0.713883 CCGTTGAACGAATCAGACCG 59.286 55.000 20.47 0.00 46.05 4.79
361 362 0.442699 GCCGTTGAACGAATCAGACC 59.557 55.000 20.47 0.00 46.05 3.85
362 363 1.144969 TGCCGTTGAACGAATCAGAC 58.855 50.000 20.47 0.22 46.05 3.51
363 364 1.872388 TTGCCGTTGAACGAATCAGA 58.128 45.000 20.47 3.17 46.05 3.27
364 365 2.900122 ATTGCCGTTGAACGAATCAG 57.100 45.000 20.47 2.74 46.05 2.90
365 366 2.292016 ACAATTGCCGTTGAACGAATCA 59.708 40.909 20.47 10.86 46.05 2.57
366 367 2.928694 ACAATTGCCGTTGAACGAATC 58.071 42.857 20.47 8.33 46.05 2.52
367 368 3.363341 AACAATTGCCGTTGAACGAAT 57.637 38.095 20.47 9.02 46.05 3.34
368 369 2.853731 AACAATTGCCGTTGAACGAA 57.146 40.000 20.47 6.81 46.05 3.85
369 370 2.097629 TGAAACAATTGCCGTTGAACGA 59.902 40.909 20.47 0.00 46.05 3.85
370 371 2.455032 TGAAACAATTGCCGTTGAACG 58.545 42.857 11.30 11.30 42.11 3.95
371 372 4.298332 AGATGAAACAATTGCCGTTGAAC 58.702 39.130 5.05 0.00 33.37 3.18
372 373 4.582701 AGATGAAACAATTGCCGTTGAA 57.417 36.364 5.05 0.00 33.37 2.69
373 374 4.582701 AAGATGAAACAATTGCCGTTGA 57.417 36.364 5.05 0.00 33.37 3.18
374 375 4.084433 CCAAAGATGAAACAATTGCCGTTG 60.084 41.667 5.05 3.49 35.25 4.10
375 376 4.057432 CCAAAGATGAAACAATTGCCGTT 58.943 39.130 5.05 0.00 0.00 4.44
376 377 3.069443 ACCAAAGATGAAACAATTGCCGT 59.931 39.130 5.05 0.00 0.00 5.68
377 378 3.429543 CACCAAAGATGAAACAATTGCCG 59.570 43.478 5.05 0.00 0.00 5.69
378 379 4.630111 TCACCAAAGATGAAACAATTGCC 58.370 39.130 5.05 0.00 0.00 4.52
379 380 4.151157 GCTCACCAAAGATGAAACAATTGC 59.849 41.667 5.05 0.00 0.00 3.56
380 381 5.535333 AGCTCACCAAAGATGAAACAATTG 58.465 37.500 3.24 3.24 0.00 2.32
381 382 5.796424 AGCTCACCAAAGATGAAACAATT 57.204 34.783 0.00 0.00 0.00 2.32
382 383 6.888632 AGATAGCTCACCAAAGATGAAACAAT 59.111 34.615 0.00 0.00 0.00 2.71
383 384 6.240894 AGATAGCTCACCAAAGATGAAACAA 58.759 36.000 0.00 0.00 0.00 2.83
384 385 5.809001 AGATAGCTCACCAAAGATGAAACA 58.191 37.500 0.00 0.00 0.00 2.83
385 386 6.404074 CCAAGATAGCTCACCAAAGATGAAAC 60.404 42.308 0.00 0.00 0.00 2.78
386 387 5.649395 CCAAGATAGCTCACCAAAGATGAAA 59.351 40.000 0.00 0.00 0.00 2.69
387 388 5.045651 TCCAAGATAGCTCACCAAAGATGAA 60.046 40.000 0.00 0.00 0.00 2.57
388 389 4.471025 TCCAAGATAGCTCACCAAAGATGA 59.529 41.667 0.00 0.00 0.00 2.92
389 390 4.774124 TCCAAGATAGCTCACCAAAGATG 58.226 43.478 0.00 0.00 0.00 2.90
390 391 4.141528 CCTCCAAGATAGCTCACCAAAGAT 60.142 45.833 0.00 0.00 0.00 2.40
391 392 3.198635 CCTCCAAGATAGCTCACCAAAGA 59.801 47.826 0.00 0.00 0.00 2.52
392 393 3.054802 ACCTCCAAGATAGCTCACCAAAG 60.055 47.826 0.00 0.00 0.00 2.77
393 394 2.912956 ACCTCCAAGATAGCTCACCAAA 59.087 45.455 0.00 0.00 0.00 3.28
394 395 2.501723 GACCTCCAAGATAGCTCACCAA 59.498 50.000 0.00 0.00 0.00 3.67
395 396 2.111384 GACCTCCAAGATAGCTCACCA 58.889 52.381 0.00 0.00 0.00 4.17
396 397 1.414550 GGACCTCCAAGATAGCTCACC 59.585 57.143 0.00 0.00 35.64 4.02
397 398 1.067821 CGGACCTCCAAGATAGCTCAC 59.932 57.143 0.00 0.00 35.14 3.51
398 399 1.403814 CGGACCTCCAAGATAGCTCA 58.596 55.000 0.00 0.00 35.14 4.26
399 400 0.032815 GCGGACCTCCAAGATAGCTC 59.967 60.000 0.00 0.00 35.14 4.09
400 401 0.687757 TGCGGACCTCCAAGATAGCT 60.688 55.000 0.00 0.00 35.14 3.32
401 402 0.178068 TTGCGGACCTCCAAGATAGC 59.822 55.000 0.00 0.00 35.14 2.97
402 403 2.555199 CTTTGCGGACCTCCAAGATAG 58.445 52.381 0.00 0.00 35.14 2.08
403 404 1.406887 GCTTTGCGGACCTCCAAGATA 60.407 52.381 0.00 0.00 35.14 1.98
404 405 0.678048 GCTTTGCGGACCTCCAAGAT 60.678 55.000 0.00 0.00 35.14 2.40
405 406 1.302511 GCTTTGCGGACCTCCAAGA 60.303 57.895 0.00 0.00 35.14 3.02
406 407 1.302832 AGCTTTGCGGACCTCCAAG 60.303 57.895 0.00 0.00 35.14 3.61
407 408 1.600636 CAGCTTTGCGGACCTCCAA 60.601 57.895 0.00 0.00 35.14 3.53
408 409 2.032528 CAGCTTTGCGGACCTCCA 59.967 61.111 0.00 0.00 35.14 3.86
409 410 3.435186 GCAGCTTTGCGGACCTCC 61.435 66.667 0.00 0.00 0.00 4.30
410 411 0.744414 TATGCAGCTTTGCGGACCTC 60.744 55.000 0.00 0.00 37.69 3.85
411 412 0.107017 ATATGCAGCTTTGCGGACCT 60.107 50.000 0.00 0.00 37.69 3.85
412 413 0.308993 GATATGCAGCTTTGCGGACC 59.691 55.000 0.00 0.00 37.69 4.46
413 414 1.016627 TGATATGCAGCTTTGCGGAC 58.983 50.000 0.00 0.00 37.69 4.79
414 415 1.401552 GTTGATATGCAGCTTTGCGGA 59.598 47.619 0.00 0.00 37.69 5.54
415 416 1.831343 GTTGATATGCAGCTTTGCGG 58.169 50.000 0.00 0.00 37.69 5.69
416 417 1.062440 TCGTTGATATGCAGCTTTGCG 59.938 47.619 0.00 0.00 37.69 4.85
417 418 2.830772 TCGTTGATATGCAGCTTTGC 57.169 45.000 0.00 0.00 0.00 3.68
418 419 3.313249 TCCATCGTTGATATGCAGCTTTG 59.687 43.478 0.00 0.00 0.00 2.77
419 420 3.544684 TCCATCGTTGATATGCAGCTTT 58.455 40.909 0.00 0.00 0.00 3.51
420 421 3.136763 CTCCATCGTTGATATGCAGCTT 58.863 45.455 0.00 0.00 0.00 3.74
421 422 2.763933 CTCCATCGTTGATATGCAGCT 58.236 47.619 0.00 0.00 0.00 4.24
422 423 1.196354 GCTCCATCGTTGATATGCAGC 59.804 52.381 0.00 0.00 0.00 5.25
423 424 1.802960 GGCTCCATCGTTGATATGCAG 59.197 52.381 0.00 0.00 0.00 4.41
424 425 1.873486 CGGCTCCATCGTTGATATGCA 60.873 52.381 0.00 0.00 0.00 3.96
425 426 0.792640 CGGCTCCATCGTTGATATGC 59.207 55.000 0.00 0.00 0.00 3.14
426 427 0.792640 GCGGCTCCATCGTTGATATG 59.207 55.000 0.00 0.00 0.00 1.78
427 428 0.667487 CGCGGCTCCATCGTTGATAT 60.667 55.000 0.00 0.00 0.00 1.63
428 429 1.299850 CGCGGCTCCATCGTTGATA 60.300 57.895 0.00 0.00 0.00 2.15
429 430 2.586079 CGCGGCTCCATCGTTGAT 60.586 61.111 0.00 0.00 0.00 2.57
446 447 3.672295 CTCCTCACCCAAGCTCGGC 62.672 68.421 0.00 0.00 0.00 5.54
447 448 2.581354 CTCCTCACCCAAGCTCGG 59.419 66.667 0.00 0.00 0.00 4.63
448 449 2.286523 ACCTCCTCACCCAAGCTCG 61.287 63.158 0.00 0.00 0.00 5.03
449 450 1.194781 TCACCTCCTCACCCAAGCTC 61.195 60.000 0.00 0.00 0.00 4.09
450 451 0.548682 ATCACCTCCTCACCCAAGCT 60.549 55.000 0.00 0.00 0.00 3.74
451 452 0.107459 GATCACCTCCTCACCCAAGC 60.107 60.000 0.00 0.00 0.00 4.01
452 453 0.543749 GGATCACCTCCTCACCCAAG 59.456 60.000 0.00 0.00 41.29 3.61
453 454 1.264749 CGGATCACCTCCTCACCCAA 61.265 60.000 0.00 0.00 42.47 4.12
454 455 1.685765 CGGATCACCTCCTCACCCA 60.686 63.158 0.00 0.00 42.47 4.51
455 456 1.677637 GACGGATCACCTCCTCACCC 61.678 65.000 0.00 0.00 42.47 4.61
456 457 0.970937 TGACGGATCACCTCCTCACC 60.971 60.000 0.00 0.00 42.47 4.02
457 458 1.115467 ATGACGGATCACCTCCTCAC 58.885 55.000 0.00 0.00 42.47 3.51
458 459 1.757118 GAATGACGGATCACCTCCTCA 59.243 52.381 0.00 0.00 42.47 3.86
459 460 1.757118 TGAATGACGGATCACCTCCTC 59.243 52.381 0.00 0.00 42.47 3.71
460 461 1.866015 TGAATGACGGATCACCTCCT 58.134 50.000 0.00 0.00 42.47 3.69
461 462 2.918712 ATGAATGACGGATCACCTCC 57.081 50.000 0.00 0.00 37.79 4.30
462 463 4.446371 AGAAATGAATGACGGATCACCTC 58.554 43.478 0.00 0.00 37.79 3.85
463 464 4.494091 AGAAATGAATGACGGATCACCT 57.506 40.909 0.00 0.00 37.79 4.00
464 465 4.260375 CGAAGAAATGAATGACGGATCACC 60.260 45.833 0.00 0.00 37.79 4.02
465 466 4.260375 CCGAAGAAATGAATGACGGATCAC 60.260 45.833 0.00 0.00 41.09 3.06
466 467 3.871006 CCGAAGAAATGAATGACGGATCA 59.129 43.478 0.00 0.00 41.09 2.92
467 468 3.871594 ACCGAAGAAATGAATGACGGATC 59.128 43.478 0.00 0.00 41.09 3.36
468 469 3.623060 CACCGAAGAAATGAATGACGGAT 59.377 43.478 0.00 0.00 41.09 4.18
469 470 3.000041 CACCGAAGAAATGAATGACGGA 59.000 45.455 0.00 0.00 41.09 4.69
470 471 2.095853 CCACCGAAGAAATGAATGACGG 59.904 50.000 0.00 0.00 43.61 4.79
471 472 2.476185 GCCACCGAAGAAATGAATGACG 60.476 50.000 0.00 0.00 0.00 4.35
472 473 2.749621 AGCCACCGAAGAAATGAATGAC 59.250 45.455 0.00 0.00 0.00 3.06
473 474 2.749076 CAGCCACCGAAGAAATGAATGA 59.251 45.455 0.00 0.00 0.00 2.57
474 475 2.733227 GCAGCCACCGAAGAAATGAATG 60.733 50.000 0.00 0.00 0.00 2.67
475 476 1.474077 GCAGCCACCGAAGAAATGAAT 59.526 47.619 0.00 0.00 0.00 2.57
476 477 0.881118 GCAGCCACCGAAGAAATGAA 59.119 50.000 0.00 0.00 0.00 2.57
477 478 0.036732 AGCAGCCACCGAAGAAATGA 59.963 50.000 0.00 0.00 0.00 2.57
478 479 0.169672 CAGCAGCCACCGAAGAAATG 59.830 55.000 0.00 0.00 0.00 2.32
479 480 0.250901 ACAGCAGCCACCGAAGAAAT 60.251 50.000 0.00 0.00 0.00 2.17
480 481 1.148273 ACAGCAGCCACCGAAGAAA 59.852 52.632 0.00 0.00 0.00 2.52
481 482 1.597854 CACAGCAGCCACCGAAGAA 60.598 57.895 0.00 0.00 0.00 2.52
482 483 2.031012 CACAGCAGCCACCGAAGA 59.969 61.111 0.00 0.00 0.00 2.87
483 484 3.052082 CCACAGCAGCCACCGAAG 61.052 66.667 0.00 0.00 0.00 3.79
484 485 3.872603 ACCACAGCAGCCACCGAA 61.873 61.111 0.00 0.00 0.00 4.30
485 486 4.624364 CACCACAGCAGCCACCGA 62.624 66.667 0.00 0.00 0.00 4.69
487 488 4.586235 ACCACCACAGCAGCCACC 62.586 66.667 0.00 0.00 0.00 4.61
488 489 3.289834 CACCACCACAGCAGCCAC 61.290 66.667 0.00 0.00 0.00 5.01
495 496 4.704833 CCTCCGGCACCACCACAG 62.705 72.222 0.00 0.00 39.03 3.66
512 513 4.025401 CAAACGCCCGTCACCTGC 62.025 66.667 0.00 0.00 0.00 4.85
513 514 2.590575 ACAAACGCCCGTCACCTG 60.591 61.111 0.00 0.00 0.00 4.00
514 515 2.590575 CACAAACGCCCGTCACCT 60.591 61.111 0.00 0.00 0.00 4.00
515 516 1.159098 TAACACAAACGCCCGTCACC 61.159 55.000 0.00 0.00 0.00 4.02
516 517 0.656785 TTAACACAAACGCCCGTCAC 59.343 50.000 0.00 0.00 0.00 3.67
517 518 1.063764 GTTTAACACAAACGCCCGTCA 59.936 47.619 0.00 0.00 0.00 4.35
518 519 1.331447 AGTTTAACACAAACGCCCGTC 59.669 47.619 0.00 0.00 35.42 4.79
519 520 1.381522 AGTTTAACACAAACGCCCGT 58.618 45.000 0.00 0.00 35.42 5.28
520 521 2.478547 AAGTTTAACACAAACGCCCG 57.521 45.000 0.00 0.00 35.42 6.13
521 522 4.816786 TCTAAGTTTAACACAAACGCCC 57.183 40.909 0.00 0.00 35.42 6.13
522 523 7.524065 ACATATCTAAGTTTAACACAAACGCC 58.476 34.615 0.00 0.00 35.42 5.68
523 524 8.944212 AACATATCTAAGTTTAACACAAACGC 57.056 30.769 0.00 0.00 35.42 4.84
527 528 9.502091 AGCAGAACATATCTAAGTTTAACACAA 57.498 29.630 0.00 0.00 36.32 3.33
540 541 9.678260 AAACTGAAAAGATAGCAGAACATATCT 57.322 29.630 0.00 0.00 39.81 1.98
543 544 9.066892 ACAAAACTGAAAAGATAGCAGAACATA 57.933 29.630 0.00 0.00 33.94 2.29
544 545 7.945134 ACAAAACTGAAAAGATAGCAGAACAT 58.055 30.769 0.00 0.00 33.94 2.71
545 546 7.066887 TGACAAAACTGAAAAGATAGCAGAACA 59.933 33.333 0.00 0.00 33.94 3.18
546 547 7.417612 TGACAAAACTGAAAAGATAGCAGAAC 58.582 34.615 0.00 0.00 33.94 3.01
547 548 7.566760 TGACAAAACTGAAAAGATAGCAGAA 57.433 32.000 0.00 0.00 33.94 3.02
548 549 7.229306 ACATGACAAAACTGAAAAGATAGCAGA 59.771 33.333 0.00 0.00 33.94 4.26
549 550 7.365741 ACATGACAAAACTGAAAAGATAGCAG 58.634 34.615 0.00 0.00 35.81 4.24
550 551 7.013178 TGACATGACAAAACTGAAAAGATAGCA 59.987 33.333 0.00 0.00 0.00 3.49
551 552 7.362662 TGACATGACAAAACTGAAAAGATAGC 58.637 34.615 0.00 0.00 0.00 2.97
552 553 8.562892 ACTGACATGACAAAACTGAAAAGATAG 58.437 33.333 0.00 0.00 0.00 2.08
553 554 8.450578 ACTGACATGACAAAACTGAAAAGATA 57.549 30.769 0.00 0.00 0.00 1.98
554 555 7.338800 ACTGACATGACAAAACTGAAAAGAT 57.661 32.000 0.00 0.00 0.00 2.40
555 556 6.183360 GGACTGACATGACAAAACTGAAAAGA 60.183 38.462 0.00 0.00 0.00 2.52
556 557 5.973565 GGACTGACATGACAAAACTGAAAAG 59.026 40.000 0.00 0.00 0.00 2.27
557 558 5.652014 AGGACTGACATGACAAAACTGAAAA 59.348 36.000 0.00 0.00 0.00 2.29
558 559 5.192927 AGGACTGACATGACAAAACTGAAA 58.807 37.500 0.00 0.00 0.00 2.69
559 560 4.780815 AGGACTGACATGACAAAACTGAA 58.219 39.130 0.00 0.00 0.00 3.02
560 561 4.422073 AGGACTGACATGACAAAACTGA 57.578 40.909 0.00 0.00 0.00 3.41
561 562 5.333339 CGTAAGGACTGACATGACAAAACTG 60.333 44.000 0.00 0.00 0.00 3.16
562 563 4.750098 CGTAAGGACTGACATGACAAAACT 59.250 41.667 0.00 0.00 0.00 2.66
563 564 4.510340 ACGTAAGGACTGACATGACAAAAC 59.490 41.667 0.00 0.00 46.39 2.43
564 565 4.509970 CACGTAAGGACTGACATGACAAAA 59.490 41.667 0.00 0.00 46.39 2.44
565 566 4.055360 CACGTAAGGACTGACATGACAAA 58.945 43.478 0.00 0.00 46.39 2.83
566 567 3.319689 TCACGTAAGGACTGACATGACAA 59.680 43.478 0.00 0.00 46.39 3.18
567 568 2.888414 TCACGTAAGGACTGACATGACA 59.112 45.455 0.00 0.00 46.39 3.58
568 569 3.057456 AGTCACGTAAGGACTGACATGAC 60.057 47.826 7.73 7.73 43.23 3.06
569 570 3.154710 AGTCACGTAAGGACTGACATGA 58.845 45.455 6.25 0.00 43.23 3.07
570 571 3.577649 AGTCACGTAAGGACTGACATG 57.422 47.619 6.25 0.00 43.23 3.21
571 572 3.321111 ACAAGTCACGTAAGGACTGACAT 59.679 43.478 7.70 0.00 43.79 3.06
572 573 2.691526 ACAAGTCACGTAAGGACTGACA 59.308 45.455 7.70 0.00 43.79 3.58
573 574 3.366440 ACAAGTCACGTAAGGACTGAC 57.634 47.619 7.70 0.21 43.79 3.51
574 575 4.139786 AGTACAAGTCACGTAAGGACTGA 58.860 43.478 7.70 0.00 43.79 3.41
575 576 4.500603 AGTACAAGTCACGTAAGGACTG 57.499 45.455 7.70 5.47 43.79 3.51
576 577 5.526506 AAAGTACAAGTCACGTAAGGACT 57.473 39.130 1.40 1.40 45.58 3.85
577 578 6.594284 AAAAAGTACAAGTCACGTAAGGAC 57.406 37.500 0.00 0.00 46.39 3.85
640 641 7.572523 TCCATCATCGATGAATTAGCTTTTT 57.427 32.000 30.41 8.52 42.09 1.94
641 642 7.094463 GGATCCATCATCGATGAATTAGCTTTT 60.094 37.037 30.41 9.27 42.09 2.27
642 643 6.373774 GGATCCATCATCGATGAATTAGCTTT 59.626 38.462 30.41 10.01 42.09 3.51
643 644 5.879223 GGATCCATCATCGATGAATTAGCTT 59.121 40.000 30.41 10.76 42.09 3.74
644 645 5.426504 GGATCCATCATCGATGAATTAGCT 58.573 41.667 30.41 11.51 42.09 3.32
645 646 4.574013 GGGATCCATCATCGATGAATTAGC 59.426 45.833 30.41 19.75 42.09 3.09
646 647 5.987098 AGGGATCCATCATCGATGAATTAG 58.013 41.667 30.41 19.42 42.09 1.73
647 648 6.175471 CAAGGGATCCATCATCGATGAATTA 58.825 40.000 30.41 18.50 42.09 1.40
648 649 4.923516 AGGGATCCATCATCGATGAATT 57.076 40.909 30.41 13.79 42.09 2.17
649 650 4.567116 CCAAGGGATCCATCATCGATGAAT 60.567 45.833 30.41 19.88 42.09 2.57
650 651 3.244665 CCAAGGGATCCATCATCGATGAA 60.245 47.826 30.41 15.93 42.09 2.57
651 652 2.303890 CCAAGGGATCCATCATCGATGA 59.696 50.000 29.09 29.09 42.09 2.92
652 653 2.303890 TCCAAGGGATCCATCATCGATG 59.696 50.000 19.61 19.61 39.52 3.84
653 654 2.570752 CTCCAAGGGATCCATCATCGAT 59.429 50.000 15.23 0.00 31.26 3.59
654 655 1.973515 CTCCAAGGGATCCATCATCGA 59.026 52.381 15.23 0.00 31.26 3.59
655 656 1.002888 CCTCCAAGGGATCCATCATCG 59.997 57.143 15.23 0.00 31.26 3.84
656 657 1.271817 GCCTCCAAGGGATCCATCATC 60.272 57.143 15.23 0.00 35.37 2.92
657 658 0.776176 GCCTCCAAGGGATCCATCAT 59.224 55.000 15.23 0.00 35.37 2.45
658 659 0.327867 AGCCTCCAAGGGATCCATCA 60.328 55.000 15.23 0.00 35.37 3.07
662 663 1.228510 CCAAGCCTCCAAGGGATCC 59.771 63.158 1.92 1.92 35.37 3.36
688 689 4.025896 CGTATGTGTTTCAAACGTGGTGTA 60.026 41.667 0.00 0.00 0.00 2.90
691 692 2.286536 GCGTATGTGTTTCAAACGTGGT 60.287 45.455 0.00 0.00 0.00 4.16
694 695 1.859703 TCGCGTATGTGTTTCAAACGT 59.140 42.857 5.77 0.00 0.00 3.99
696 697 2.567067 GGTCGCGTATGTGTTTCAAAC 58.433 47.619 5.77 0.00 0.00 2.93
697 698 1.192757 CGGTCGCGTATGTGTTTCAAA 59.807 47.619 5.77 0.00 0.00 2.69
698 699 0.785378 CGGTCGCGTATGTGTTTCAA 59.215 50.000 5.77 0.00 0.00 2.69
726 742 3.349481 AAGAGAGAGCGCGTCTGCC 62.349 63.158 18.60 6.71 34.71 4.85
727 743 1.871789 GAAGAGAGAGCGCGTCTGC 60.872 63.158 18.60 7.13 34.71 4.26
729 745 2.411504 GGGAAGAGAGAGCGCGTCT 61.412 63.158 14.33 14.33 38.71 4.18
730 746 2.010582 ATGGGAAGAGAGAGCGCGTC 62.011 60.000 8.43 2.67 0.00 5.19
731 747 0.752009 TATGGGAAGAGAGAGCGCGT 60.752 55.000 8.43 0.00 0.00 6.01
732 748 0.318275 GTATGGGAAGAGAGAGCGCG 60.318 60.000 0.00 0.00 0.00 6.86
733 749 0.318275 CGTATGGGAAGAGAGAGCGC 60.318 60.000 0.00 0.00 0.00 5.92
734 750 1.309950 TCGTATGGGAAGAGAGAGCG 58.690 55.000 0.00 0.00 0.00 5.03
809 825 0.754472 TATAGCCCGTTTTCCCCTCG 59.246 55.000 0.00 0.00 0.00 4.63
870 888 4.581824 TCCTCTTTCAAGGAATATGCATGC 59.418 41.667 11.82 11.82 42.56 4.06
883 905 4.841246 AGCTAGGTCTTCTTCCTCTTTCAA 59.159 41.667 0.00 0.00 36.60 2.69
887 909 4.936802 TGTAGCTAGGTCTTCTTCCTCTT 58.063 43.478 0.00 0.00 36.60 2.85
897 919 1.173444 CGGCGGATGTAGCTAGGTCT 61.173 60.000 0.00 0.00 34.52 3.85
988 1021 4.172512 AGCCATCGCTCCTGCCTG 62.173 66.667 0.00 0.00 43.95 4.85
1023 1056 2.495270 CTCCCATATCACCATCTCCTCG 59.505 54.545 0.00 0.00 0.00 4.63
1032 1065 2.494073 GACGAGGATCTCCCATATCACC 59.506 54.545 0.00 0.00 37.41 4.02
1062 1095 3.009115 CGGAGGAGGGCTTTGGGA 61.009 66.667 0.00 0.00 0.00 4.37
1113 1146 3.236003 GAAGTCGCGGGTGGAGGTT 62.236 63.158 6.13 0.00 0.00 3.50
1170 1203 1.007734 GTTGGTGCAGTCGTCGAGA 60.008 57.895 0.00 0.00 0.00 4.04
1193 1226 1.726853 CGAGTCGGAGATGCCTTTTT 58.273 50.000 4.10 0.00 40.67 1.94
1339 1375 4.207955 TGATAGTAGGAGATGTTGTCGCT 58.792 43.478 0.00 0.00 0.00 4.93
1370 1406 3.157252 GGAGGCCATCGCAGGAGA 61.157 66.667 5.01 0.00 36.38 3.71
1402 1438 0.326264 ATGAAGAAGCCGCTGTCCTT 59.674 50.000 0.00 0.00 0.00 3.36
1557 1593 0.174389 ACGCATCTTGACGCTCATCT 59.826 50.000 0.00 0.00 0.00 2.90
1578 1629 2.745884 CCCAATGCCAAGACGCGA 60.746 61.111 15.93 0.00 0.00 5.87
1580 1631 3.056313 GAGCCCAATGCCAAGACGC 62.056 63.158 0.00 0.00 42.71 5.19
1620 1671 1.203523 GTAATCGCATTTGGCAACCCA 59.796 47.619 0.00 0.00 45.17 4.51
1659 1724 1.867233 CTACCACGGAATAGCACATGC 59.133 52.381 0.00 0.00 42.49 4.06
1969 2034 3.435327 GGCATGACAGACACATAAAACGA 59.565 43.478 0.00 0.00 0.00 3.85
2038 2103 1.969064 CATCCGTGCCAACCCGAAA 60.969 57.895 0.00 0.00 0.00 3.46
2146 2211 6.036953 GCATTCATAGCATAATCCTCTAGTGC 59.963 42.308 0.00 0.00 36.11 4.40
2162 2227 6.994496 TCAGATAAAAGGTGGAGCATTCATAG 59.006 38.462 0.00 0.00 0.00 2.23
2164 2229 5.759059 TCAGATAAAAGGTGGAGCATTCAT 58.241 37.500 0.00 0.00 0.00 2.57
2195 2260 0.037326 TTGCAGCTCTTGAGGGTACG 60.037 55.000 0.00 0.00 0.00 3.67
2199 2264 2.928334 ACATATTGCAGCTCTTGAGGG 58.072 47.619 0.00 0.00 0.00 4.30
2269 2334 5.645929 TCAGGCATAGCTTCGTGATTAAAAA 59.354 36.000 0.00 0.00 0.00 1.94
2270 2335 5.182487 TCAGGCATAGCTTCGTGATTAAAA 58.818 37.500 0.00 0.00 0.00 1.52
2271 2336 4.765273 TCAGGCATAGCTTCGTGATTAAA 58.235 39.130 0.00 0.00 0.00 1.52
2304 2380 3.270027 TGGAAGGATATCAACACAAGCG 58.730 45.455 4.83 0.00 0.00 4.68
2387 2463 8.629158 TCAAACAGTTAGCACATATTTCAAACT 58.371 29.630 0.00 0.00 0.00 2.66
2574 2660 7.435192 CAGGTAAAACTCACCAGAAAACAAATC 59.565 37.037 0.00 0.00 38.62 2.17
2680 2767 2.106477 AGCAAACAAGAGCCTCTAGC 57.894 50.000 0.00 0.00 44.25 3.42
2844 2931 6.480320 GCAATGCGTATAAGATATTCCCTAGG 59.520 42.308 0.06 0.06 0.00 3.02
2845 2932 7.041721 TGCAATGCGTATAAGATATTCCCTAG 58.958 38.462 0.00 0.00 0.00 3.02
2917 3007 1.670811 ACAAAAGAACCTGACACTGCG 59.329 47.619 0.00 0.00 0.00 5.18
2918 3008 3.128589 TCAACAAAAGAACCTGACACTGC 59.871 43.478 0.00 0.00 0.00 4.40
2928 3020 6.019559 GCCTCTGTTCATTTCAACAAAAGAAC 60.020 38.462 8.07 8.07 35.83 3.01
2983 3079 1.798223 TCACAGTTGTAGAATGCACGC 59.202 47.619 0.00 0.00 0.00 5.34
2985 3081 4.151335 CAGACTCACAGTTGTAGAATGCAC 59.849 45.833 0.00 0.00 0.00 4.57
3015 3119 7.133891 ACTAAGCTTAGTAGTGCAAATTGTG 57.866 36.000 32.78 6.97 41.92 3.33
3047 3154 9.561069 CACTAGGCTACCAAATTGATTAATACT 57.439 33.333 0.00 0.00 0.00 2.12
3048 3155 9.338622 ACACTAGGCTACCAAATTGATTAATAC 57.661 33.333 0.00 0.00 0.00 1.89
3049 3156 9.337396 CACACTAGGCTACCAAATTGATTAATA 57.663 33.333 0.00 0.00 0.00 0.98
3050 3157 7.834181 ACACACTAGGCTACCAAATTGATTAAT 59.166 33.333 0.00 0.00 0.00 1.40
3096 3203 4.222336 TGGAACATTTGGAAGGAACACAT 58.778 39.130 0.00 0.00 0.00 3.21
3112 3219 2.224378 GCCATCTATAGCTGCTGGAACA 60.224 50.000 13.43 0.00 0.00 3.18
3120 3227 0.734253 GCCGTCGCCATCTATAGCTG 60.734 60.000 0.00 0.00 0.00 4.24
3124 3231 1.167781 TCGTGCCGTCGCCATCTATA 61.168 55.000 0.00 0.00 0.00 1.31
3136 3243 1.568612 ATTGCTCACAAGTCGTGCCG 61.569 55.000 0.00 0.00 45.92 5.69
3143 3250 5.847111 ATGCAATATCATTGCTCACAAGT 57.153 34.783 20.90 1.15 45.13 3.16
3147 3254 5.190992 TGGAATGCAATATCATTGCTCAC 57.809 39.130 20.90 12.87 45.13 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.