>input_sequence_58094
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------------------------------------------------------------------------ATGGCTCC
CCTCCGTGCCCTCCCCGAGGAGATGGTGATATGGGAGATCCTCGTCCGCCTGCCTCCCAAAGCCCTCCTCCGCTGCCGCA
CCGTCTGCCGTGCCTGGCGCAGCATAACCTCCACCCGCGACTTCCTCCTCGCCCACCATGTCCACCAGCCCGCCCTCCTC
CTTCTCGACGACTGCACCAACTATGAAAAAGGCATCTCCGACTCGCTAAACATCATCTGCTTCGACCATCGGGCAGGGGT
GGCCACCCCCGACCAGCTCCAGCCCATCGCC---CGACTTACTGCCCAAACCTCCTTTCATCTAGATGCCGCCTTGATGA
GGGTCGACTGCGGAAGCGACAACATCTCCTACTATCATCCGGTTGTCTCCTGCGATGGCCTCCTCGTCCTCTGCGTCAAG
GACAGCGGCTTCTTCATCTGCAATCCGGCAACTCGCCAGTATGCTCGCCTCCCGCTCCCTTTGGGTCATGCGTGGTGGCT
CCTGGGAATGTACCCTCACCCTTCTACTGACGAGTACAGACTATTGCTCTACTCATACAAGCGTATCACAGAAGATGAGC
---------------GTCAAGATGCGTGTCGCGTCTTGGCATTGGGCTCCGGCCATCCACCGAGGCATATTGGGTTGCCA
AATGCGATTAC------GCTGGGAT--------TAGACGACCCGCATGTGCTATTCCGTGGTAGCCTGCATTGGTGCACA
TCTGATTATGACGGAGAATGCAAAACGATAGGGGTGTTCGACACCAGATCTGAATTGTTCCGGGAGATGCGTACTCCCGT
TGTTGCTTGCTGCGTTGACCTGTTTGAAATGGATGACATGTTTGGCGTGGCCATCCTTGATTGTGAGAAAATCATTGATA
TATGGGTGTTGCAAGATTATGAAAGGGAGATATGGGTCTTAAATCACCGGATTGAATTGCCGTTTGCGGAGATCAGGGTG
CAGTGCGATAAGTATGATACATACATTCGGTCGTCGTTTTATGTGTCTGTCATGCCAGGGGATGGTGAGTTGCTTGTGTT
GGTCAAATTTGCCGATTGGCTATTTCGGGTTGGCACGGATGGCAAGTTGGTCGCCACTTTACATCGCAAAGGATTAGATC
GTACTTATTTTCAGCTTAAACAATCTCTTGTTTCGCATACCTTCTTTCATGCACTAGAGGATTATGCTATGAATGCTCCA
CCTTTTATCTGA--------------------------------------------------------------------
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--------------
>chr3D_1_TraesCS3D01G456700
GGGAAAAAGATGCAGAGGGAGTCCATTAGTTAGCATCATGAGATATGATGTCTTCCCAGAAAAATATGAGAAATGTGTGG
CTGCTCTCGGTGCACCTACACCCAGGTGAATAGTAAAATCAAAACAAATACAAAGCAAAATCAAAAAATTCTGAATTTTT
GGGAAATCAAACTTGATCAAATATTTAAGGTACTTGCAAAATTTCGGTCACAAATATCGCCATTTGGGGAGGCCTCACCA
AAAAACAAAATCAATGCTTAGATTCGAGCAGCCGCGCACCTACGCTGATATGATTCTCGCTTGGAGTGTATACGTACCAG
CGCCGTCCATGACCGATGCATGGTATATGGTGGCCGTGGCCGGTCTGATTCGTTCAACGGCAATTGTTTCATCTTTGGTG
AGCTATCTTGGAGGTCCGCAAAGCTGCATATCAACGATGGAGCCGCGCCGAGCTTGGGTGAGGAGGTGATCCGTCATTCA
TTTCTTCGGTGGCTGCTGTGGTGGTGCCGGAGGCAGGTGACGGGCGTTTGTGTTAAACTTAGATATGTTCTGCTATCTTT
TCAGTTTTGTCATGTCAGTCCTTACGTGACTTGTACTTTTTTTATGATATATAAATGAGTCATGTATTACCATGACAAAA
AAAAAGCTAATTCATCGATGATGGATCCCTTGGAGGCTTGGACACAGGTACACCACGTT---------------TGAAAC
ACATACGCGACCGGGCGGGCAGGCAGACGCGCTCTCTCTTCCCATACGAATAACGCGGACGCGTTGGCCCTGGACCGGAT
CCTATCCTTCTTCAACTTTCCGTCCGAGGGGAAAACGGGC--TATATACAGCAGCGGGTTTGTTGGATCGTATCTCATAA
CAGCAGAGCATGC----ATATTCCTTGAAAGAGGAAGAAGACCTAGCTACATCCGCCGCCGTCACAACGCCTGCTTTGCA
TC-----------TAGGACGGATCGAGAGCTCTCAACCGGCGACCGTGGCCAAGGCCGCACAGGCAGGAGCGATGGCTCC
CCTCCGTGCCCTCCCCGAGGAGATGGTGATATGGGAGATCCTCGTCCGCCTGCCTCCCAAAGCCCTCCTCCGCTGCCGCA
CCGTCTGCCGTGCCTGGCGCAGCATAACCTCCACCCGCGACTTCCTCCTCGCCCACCATGTCCACCAGCCCGCCCTCCTC
CTTCTCGACGACTGCACCAACTATGAAAAAGGCATCTCCGACTCGCTAAACATCATCTGCTTCGACCATCGGGCAGGGGT
GGCCACCCCCGACCAGCTCCAGCCCATCGCC---CGACTTACTGCCCAAACCTCCTTTCATCTAGATGCCGCCTTGATGA
GGGTCGACTGCGGAAGCGACAACATCTCCTACTATCATCCGGTTGTCTCCTGCGATGGCCTCCTCGTCCTCTGCGTCAAG
GACAGCGGCTTCTTCATCTGCAATCCGGCAACTCGCCAGTATGCTCGCCTCCCGCTCCCTTTGGGTCATGCGTGGTGGCT
CCTGGGAATGTACCCTCACCCTTCTACTGACGAGTACAGACTATTGCTCTACTCATACAAGCGTATCACAGAAGATGAGC
---------------GTCAAGATGCGTGTCGCGTCTTGGCATTGGGCTCCGGCCATCCACCGAGGCATATTGGGTTGCCA
AATGCGATTAC------GCTGGGAT--------TAGACGACCCGCATGTGCTATTCCGTGGTAGCCTGCATTGGTGCACA
TCTGATTATGACGGAGAATGCAAAACGATAGGGGTGTTCGACACCAGATCTGAATTGTTCCGGGAGATGCGTACTCCCGT
TGTTGCTTGCTGCGTTGACCTGTTTGAAATGGATGACATGTTTGGCGTGGCCATCCTTGATTGTGAGAAAATCATTGATA
TATGGGTGTTGCAAGATTATGAAAGGGAGATATGGGTCTTAAATCACCGGATTGAATTGCCGTTTGCGGAGATCAGGGTG
CAGTGCGATAAGTATGATACATACATTCGGTCGTCGTTTTATGTGTCTGTCATGCCAGGGGATGGTGAGTTGCTTGTGTT
GGTCAAATTTGCCGATTGGCTATTTCGGGTTGGCACGGATGGCAAGTTGGTCGCCACTTTACATCGCAAAGGATTAGATC
GTACTTATTTTCAGCTTAAACAATCTCTTGTTTCGCATACCTTCTTTCATGCACTAGAGGATTATGCTATGAATGCTCCA
CCTTTTATCTGAAGGTTGTCGTACCCTCAAGAGCTGCAATATGTATGAATTGGATCCACTATAAGCTACCAGCTTGTTTG
TTGATGCATAAATTTTTTAATCACGAAGCTATGCCTGATATATAG-----------CTACGCTTGTGTTGATATCCTTCC
ATGCTGAAGAAAGTCACTAATGTGCATGTGATTTTAAGATTATCAAAAGTCATTTTGATGCGAGTTTGAAATATGTGCTA
ACTGTTTGATCCACGTGATGTTTCTTTTTTCCTGGACTGAAGAAT---TATACTGTTCTTTTATCTATTGGCCTTT---T
TAGTACTTGCTACTTAATTAGCAATCCAAGCGTGTTGTTTCCTCTCTCTAAGCTTGTTCTAGCTGACTAATAAATGTGTG
GCAGT----TTATCCTCCTGATTTGTTTTCTGGTGAGTTTTACCTGATGTTTAGAAGAGGCTGTTGCTAGCTAGTTCACT
TGAGCTAGCTGAAGCTGTTGTCAGCTAG-TTCACTTGAGCTAGCTAGCTAGAGGCTCTTGTTTGCTTGAGCTAAGCTTCC
TTGCCACAAGTTGTAGGTTCAGCTATTTCTGTTCCAGTTGCTGCTCCTCTTTTTTACTTGCCTCTCTTTCAATGTTTGGT
TTACACTAGTGATTGCTACCAGAAAAATCTTCATCACTAGCAATTCTTCACC---TAGGGAATATCTTATACGCATTGCA
GTCGAATCTTAGAAGATCCAGTGCAGTCCGGCTGGATATCTGGCAACGCA--GTGTCAGGTTCTTTTGTTGAAATGAACA
GAGGCTC----TTAAGGTCAAACTTACATGACTGAAACGCGTGCATTCTACAACTGTGAGTCTG--------TTAAGACA
CAATTTGCACTACTAAGCTTAGTATC---TAGAAGTATTAATCAATTTGGTAGCCTAGTGTGTTTTGCATTAGCCTTTTG
TGATGTGTTCCTTCCAAATGTTCCAGCAGCTATAGATGGCGACGGCACGACTTGTGAGCAATGATATTGCATTCCATGTC
AGTGCCACCGGACT
>chr3B_660
--------------------------------------------------------------------------------
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-------------------GATCGATCCCTTGGAGGCTTGGACACAGGCACGCCGCACAGCACGTTTGATACCGTGAAAC
GCATACGCGACCGGGCAGGCACACGA----GCTCTCTCTTCCCATACGAATCACGCGGACGCGTTGGCCCT-GACCGGAT
CCTATCCTTCTTCAACTTTCCGTCAGAGGGGAAAACGGGCTATATATACAGCAGCGGGTTTGTTGGATCGTATCTCATAA
CCGCAGACCATGC----ATATTCCGTGACAGAGAAAGATGACCTAGCTACATACGCCGCCATCACACCGCCTGCTTTGCT
CCTACTAGGACCGTAGGACGGACCGAGAGCTCTCAGCCGGCGACCATGGCCAAGCCCGCAGAGGCAGAAGCGATGGCTCC
CCTTCGTGCCCTCCCGGAGGAGATCGTGATATGGGAGATTCTCGTCCGCCTGCCCCCTAAAGACCTCCTCCGCTGCCGCA
CCGTCTGCCGCGCCTGGCGCAGCATCACCTCCACCCGCGACTTCCTCCTCGCCCAACATGCCCGCCAGCCCGCCCTCCTC
CTCCTCGACGACTGCACCAACTATGCAAAAGGCATCTCCGACCCGCTAAACATCGTCTGCTTCGACCATCGGGCAGGGGT
GGCCACCCCCGACCAGCTCCAGCCCGTCGCC---CGACTTACTGCCCAAACCTCC-------------------------
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>chr3A_853
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---------------------------------------------------------------------GTATCTCATAA
CCGCAGACTATGCATATATATTCCGTGACAGAGGAAGATGACCTAGCTACATCCGCCGCCGTCACAACGCCTGCTTTGCA
TC-----------TAGGACGGATCGAGAGCTCTCAACCGGCGACCGTGGCCAAGGCCGCAGAGGCAGGAGCGATGCCTTC
CCTCCGTGCCCTCCCGGAGGAGATCGCGATATGGGAGATCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCGCTGCCGCA
TCGTCTGTCGCGCCTGGCGCCGCATCACCTCCACCCGCGACTTCCTCCTCGCCCACCATGCCCGCCAGCCCGCCCTCCTC
CTCCTCGACGACTGCACCAACTATGCAAAAGGCATCTCCGACTCACTAAACATCATCTGCTTCGACCATCGGGCAGGGGT
GGCCACTCCCGACCAGCTCCAGCCCGTCGCC---CGACTTACTGCCCAAACCTCCTTTCATCTAGATGCCGCCTTGATGA
GGGTCGGCTGCAGAGGCGACAATATCTCCTACTATCATCCGGTTGCCTCCTGCGATGGCCTCCTCATCCTCTGCGTCGAG
GGCAGCGGCTTCTTCATCTGCAATCCGGCAACTCGCCAGTATGCTTGCCTCCCGCTCCCTTTGGGTCATGCGTGGTGGCT
CCTGGGAATGTACCCTCACCCTTCTACTGACGAGTACAGACTATTGCTCTACTCATACAAGCGTATCACAGACGATGAGC
---------------GTCAAGATGCGTGCCACGTCTTGGCATTGGGCTCCGGCCATCCACCGAGGCATATCGGGTTGCCA
GATGCGGTTAC------GCTGGGAT--------TAGACGACCCTCATGTGCTATTCCGTGGTAGCCTGCATTGGTGCACA
TCTGATTATGACGGAGAATGCAAAACGATTGGGGTGTTCGACACCAGATCTGAATTGTTCCGGGAGATGCGTACTCCCAT
TGTTGCTTCCTGCGTTGACCTGTTTGAAATGGACGACATGTTTGGCGTGGCCATCCTTGATTGTGAGAAAATCATTGATA
TACGGGTGTTGCAAGACTATGAAAGGGAGATATGGGCCTTAAATCGCCGGATTGAATTGCCCTTTGTGGAGATCAGGGTG
CAGTGCGATAAGTATGACACATACATTCGGTCGCCGTTTTATGTGTCTGTCACGCCAGGGGATGGTGAGTTGCTTGTGTT
GGTCAAATTTGCCGATTGGCTACTTGTGGTTGGCACGGATGGCAAGTTGGTCGCCACTTTACATCGCAAAGGACTAGATA
GTACCTATTTTCAGCTTAAACAATCTCTTGTTTCGCATACCTTCTTTCATACACAAGAGAATTATGTTGTGAATGCTCCA
CCTTTTATCTGAAGTTTGTTGTATCCTCAAGAGCTGCAATATGTATGAATTGGATCCACTATAAGCTACCAGCTTGTTTG
CTGATGCATA------TTAATCACGAAGCTATGACTGTTATATAGTTGCATGAAATCTATGCTTGTGTTGATATCCTTCC
ATGCTGAAGAAAGCGACTAATGTGCATCTGATTTTAAGATTATCAAAAGTCATTTCGA----------------------
--------------------TTTCTTTTTTCCTGGACTGAAGAATAAGTATATTGCTCTTTTATCTATTTGTCTTTTTAT
TAGTACTTGCTACTTAATTAGCAATCCAAGCGTGTTGTTTCCTCATTCTAAGCTTGTTCTAGCTTACTAATAAATGTGTG
GCAG----TTTATCCTCCTAATTTGTTTTCTGGTGAGTTTTACCTGATGTTTAGAGGTGGCTGTTGCTAGCTAGTTCACT
TGAGCTAGCTGAAGCTGTTGTCAGCTAGTTTCACTTGAGCTAG----CTAGAGACTCTTGTTTGCTTGAGCTAAGCTTCC
TTGCCACAAGTTGTAGTTTCAGCTATTTCTGTTCCAGTTGCTGCTCCTCTTTTTTACTTGACTCTCTTTCAATGTTTGGT
TTACACTAGTGATTGCTACCAGAAAAATCTTCATCACTAGCAATTCTTCATATAGTAGGGAATATCTTATACGTATTGCA
GTCAAATCTTAGAAAATCCAGTGCAGCCCGGCTGGATATCTGGCAATACA--GT---AGCTTCTTTTGTTGAAATGAACA
GAGGCTC----TTAAGGTCAAACTTACATGACTGAAACACCTGCATTCTCGAACTGTGAGTCTA--------TTAAGATA
CAATTTGCACTACACAGCTTAGTATC---TA------TTAATCAATTTGGTAGCCTAGTGTGTTTTGCATTAGCCTTTTC
TGTTGTGTTCCTTCCGAAGGTTCCAGAAGCAATAGATGGCGCTGGCACGGCTTATGAGCACTGATATTGCATTCCATGTC
AGTTCCACCAGACT
>chr3A_908
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------------------------------------------------ACCTCCGCCGCCATCGCAACTCGTCCTTTGCC
CC-----------TAGGACCGATGAAGAGCTCTCAGCCGGCGACCATGGGCAGGGCCGCAAGGACACGAGCGACGCCTTC
CCTCCGTGGCCTCCCAGAGGAGATCGTCATATGGGATATCCTCGTCCGCCTGCCCCACAAACCC-TCCTCCGTTGCCGTG
CTGTCTGCCGCACCTGGTACAGCGTCACCTTCACCTGCGATTTTCTCCTTGCACACCACGCCCGCCAGCCCGCCCTCCCC
TTCCTCGACAAGTGCAACTACTATACAGAAGGCATGAGCGAATCCCTAGACATCGCTTGCTTCGACCATCGGCCAGGGGT
GGCCGCCCCCGACCAGCTCCAGCCCATCGCC---CGACTTATTGCCCAAACCTCCTTTCATCTGGATGCCGCAATCTATA
AGGACAACATAGGCGATT---ACATCTCCTTCTATCAACCGGTTGCCTCCTGCGATGGCCTTCTCATCTTCTGTGTCGAG
GACACCGACTTCTTCGTATGCAATCCAGCAAGTCGCCAATATGCTCGCCTCCCGCTGCCTACGGATCATAAATGGACGCT
CCTAGGAATGTACCCTCACCCCCCTACCGGTGAGTACAGGCTACTTCTTTACTCGTACAGAGGTAACCCGGACCATGATG
AGCCGGCGCCCAATAGTCAATATGCATGCCATGTCTTGGCATTGGGCTCCGAGAAGCCGCCGAGGCACATCGGGTGGCCA
GATGCTACTAC------GATTACGGCGCTGGGAATA--GACCCTCATGTGCTATTCCATGGCAGCCTGCATTGGTATCCA
TTGGACAATGATGGCAAAAGCGCAATGATAGTAGTGTTCAACACAACATCCGAGTCATTCCGACAAATGCGCGCTCCTGT
TGTTACTTACTGCGCCGACATATTTGAGATAGATGACAAGCTTGGCATGGCCACCTCTGATTGTGTGAAAATCATTGATA
TATGGGTATTGCAAGACTATGAAAGGGAGGTGTGGACCTTAAATCGACGGATTGAATTGCCGGTTGCGGAGATCAGTGTG
CTGTTTGACGAGCGGTCAT---G------------GTTGGATGTGTTGGTCGTACCTGGGGATGGTGAATTGCTCGTGTT
GGTCAAATCTGACGAGTGGCTACTTAAGGTTGGGATGGATGGCAAGTTGGTCGCCACTTTATATCACAAAGAAGTCGAGC
TTACTCACTTTCGGCTCAAACAAACTCTTGTTCCACATACCTTCTTTCCAATACTAGAGGGTTATGTTGTAAATTCCCCA
CCTTTCATCTGAAGGCTGT-------------------------------------------------------------
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>chr3D_915
--------------------------------------------------------------------------------
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-------------------------------------------------------CCGCCGTCACAACTCCTCCTTCTTT
GCTCCTGGGACGATTAAT----TCGACAGCTCCCAGCCGCCGACCATGGCCAAGGCCACAAGGGCAGGGGCGACGCCTCA
CCACCGCAACTTCCCAGATGAGATCATCGTATGGGAGATCCTTGTCCGTCTGCCACCCAAAGCCCTCCTCCGCTGCCGTG
CCGTTTGCCGCGCCTGGTGCAGCGTTACCTCCTCCTACGACTTCCTCCTCGCCCACCACACCTGCCAGCCCGCTCTTCCT
CTCCTCCGCAACAGTGAAAACTACAGAAAAGG------------CCTAGACGTCTGTTGCTTCGACCATCGGCCAAGGGT
GGCCGCCCCCGACCATCCCCAGCCCAACACCCGACGACTAATTGACCAAACCTCCTTTCTTCTAGATGATGCCTTCTGCA
A------------TGACG---AGACCCCCTTCTCTTGTCTGGTTACCTCCTTTGATGGCCTCCTCATCTTCCGCGCCGGG
CTCAACAACTTCTCCATCTGCAATCCGGCAACTCGCCAGTATGCTCGCATCCCACTGCCTACACATCTTAACTGGTGGAT
TCTGGGAATGTACCCTCACCCCCCTACCGGCGAGTACAGACTATTGCTCTACTCTTACATACCGGCACCCGGGACTA---
------------------ATGCTGCGTGCCACGTCTTGGCACTGGGCCCCGTCCAGCCTCCGAGGCACATCGGGTGGCCA
GATGCGATTACACATATGATTACGGAGCTAGAATCA--GACCCTCGTGTGCTATTCCATGGTAGCCTGCATTGGTACCCA
TTGTATTATGAAGGCAAAAACACCATGATAGTGGTGTTTGACACCACATCTGAGTCATTCCGGGAGATGCGTGCTCCCGT
TGTTACTCACTACGCTGACTTGTTTGAGATGGACAACATGCTCAGCATGTCCGCCTTTGATTATGTGAAAACCATTGATA
TATGGGTGTTGCAAGACTATGAAAGGGAGGTCTGGGCCTTAAAACAGAAGATTGAATTGCCAATTGCGGAGATCAAGGTG
CAGTGTGACAAGTATGATGGTAG------------GTTGGATTTGATGGTTGTGCCTGGGGATGGTGAGTTGCTCGTGTT
GGTCAAATTTGACGAGTGGCTTCTTCTTGTTGGCATGGATGGCAAGTTGGTCGCCACTTCCCATCACAAAGAAGTCGGTC
TTAGTCACTTTAATCTCAAACAAACTCTTGTTCCGCAAACCTTCTTTTCGACACTAGAGGGTTATGT----ACTGCTCCG
CCTTTCATCTAAAGATTGT-------------------------------------------------------------
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>chr3B_1226
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---------------------------------------------------------TGCTTCGACCATCGGCCAAGGGT
GGCCGCCCCTGACCATCCCCAGCCTGTCACCCGACGACTAATTGACCAAACCTCCTTTCTTCTAGATGACGCCTTCTGCA
A------------CGACG---AGACCCCCTTCTCTTGTCTGGTTACCTCCTGTGATGGCCTCCTCATCTTCCGCAGCGGG
CTCAACAACTTCTCCATCTGCAATCCGGCAACTCGCCAATATGCTCGCATCCCACTGCCTACACATCTTAACTGGTGGAT
TCTGGGAATGTACCCTCACCCCCCTACCGGCGAGTACAGACTATTGCTCTACTCTTACATACCGGCACCCGGGA------
---------------GTGATGCTGCGTGCTACGTCTTGGCACTGGGCCCCGTCCAGCCTCCGAGGCACATCGGGTGGCCA
GATGCGATTACACATATGATTACGGAGCTAGAATCG--GACCCTCGTGTGCTATTCCGTGGTAGCCTGCATTGGTACCCA
TTGTATTATGAAGTCAAAAACACCATGATAGTGGTGTTTGACACCACATCTGAGTCATTCCGGGAGATGCTTGCTCCCGT
TGTTACTCACTGCGCTGACTTGTTTGAGATGGACAGCATGCTCAGCATGTCCGCCTTTGATTATGTGAAAACCATTGATA
TATGGGTGTTGCAAGACTATGAAAGGGAGGTCTGGGCCTTAAAACAGAAGATTGAATTGCCAATTGCGGAGATCAAGGTG
CAGTATGACAAGTATGACGGTAG------------GTTGGATTTGATGGTTGTGCCGGGGGATGGTGAGTTGCTCGTGTT
GGTCAAATTTGACGAGTGGCTTCTTCTTGTTGGCATGGATGGCAAGTTGGTCGCCACTTCCCATCACAAAGAAGTCGGTC
TTAGTCACTTTAATTTCAAACAAACTCTTGTTCCGCAAACCTTCTTTTCGACACTAGAAGGTTGTGT----AATGCTCCA
CCCTTCATCTAAAGATTGT-------------------------------------------------------------
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>chr3B_1297
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---------------------------------------------------CTCCTTTCATCTAGATGCCGCCTTGATGA
GGGTCGACTGCGGAGGCGACAATATCTCCTACTATCATCCGGTTGCCTCCTGCGATGGCCTCCTCATCCTCTGCGTCGAG
GACAGCGGCTTCTTCATCTGCAATCCGGCCACTCGCCAGTATGCTCGCCTCCCGTTCCCTTTGGGTCATGTGTGGTGGCT
CCTAGGAATGTACCCTCACCCCCCTACCGACGAGTACAGACTATTGCTCTACTCATACAAGCGTATCACAGACGATGAGC
---------------GTCAAGATGCGTGCCACGTCTTGGCATTGGGCTCCGGCCATCCACCGAGGCATATCGGGTTGCCA
GATGCAATTAT------GCTCGGATTAGACGAGTAGACGACCCTCATGTGCTATTCCGTGGTAGCCTGCATTGGTGCACA
TCTGATTATGACGGAGAATGCAAAACGATAGGGGTGTTCGACACCAGATCTGAATTGTTCCGGGAGATGCGTACTCCCGT
TGTTGCTTGCTGCGTTGACCTGTTTGAAATGGACGACATGTTTGGCGTGGCCATCTCTGATTGTGAGAAAATCATTGATA
TATGGGTGTTGCAAGATTATGAAAGGGAGATATGGGTCTTAAATCGCAGGATTGAATTGCCGTCTGCAGAGATCAGGGAG
CAGTGTGATAAGTATGACACATACATTCGGTCGCCGTTTTATGTGACTGTCATGCCAGGTGATGGTGAGTGGCTCGTGTT
GGTCAAATTTGCCGACTGGCTACTTCGGGTTGGCATGGATGGCAAGTTGATCACCACTTTCCATCGCAAAGGATTAGATC
ATACCTATTTTCAGCTTAAACAATCTCTTGTTTCGCATACCTTCTTTCATACACTAGAGGATTATGTTGTGAATGCTCCA
CCTTTTATCTGAAGGTTGTTGTATCCTCAAGAGCTGCAATATGTATGAACTGGATCCAGTATAAGCTACCAGCTTGTTTG
TTGATGCATA------TTAATCACGAAGCTATGACTGTTATATAGTTGCATGAAATCTATGCTTGTGTTGATATCCTTCC
ATACCGAAGAAAGCGACTAATGTGCATCTGATTTTAAGATTATCAAAAGTCATTT-GATGCGCGTTTGAAATATGTGCTA
TCTGTTCGATCTGTGTGATGTTTC-TTTTTCCTGGACTGAAGAAT---TATATTGCTCTTTTATCTATTGGTCTTTTTAT
TAGTACTTGCTACTTAATTAGCAATCCAAGCGTGTTGTTTCCTTATTCTAAGCTTGTTCTAGCTGACTAATAAATGTGTG
GCAGTCAGTTTATCCCCCTAATTTGTTTTCTGGTGAGTTTTACCTGATGTTTAGAAGAGGCTGTTGCTAGCTAGTTCACT
TGAGC---------------------------------------------------------------------------
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>chr4A_2302
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--------------------------------------------------------CTATGCTTGTGTTGATATCCTTCC
ATGCTGAATAAAGTGACTGATGTGCATGTGA-TTTAAGATTATCAAAAGTCATTTTGATGCGCGTTCGAAATATGTGCTA
ACTGTTTGATCCACGTGATGTTTCTTTTTTCCTAGACTGAAGAAT---TATATTGTTCTTTTATCTATTGGCCTTTT---
TAGTACTTGCTACTTAATTAGCAATCCAAGCGTGTTGTTTTCTCTTTCTAAGCTTGTTCTAGCTGACTAATAAATGTGTG
GCATT----TTATTCTCCTAATTTGTTTCCTGGTGAGTTTTACCTGATGTTATGAAGAGGCTGTTGTTAGCTAGTTCACT
TGAGCTAGCTGAAGCTGTTGTTAGCTAG-TTCACTTGAGCTAA----CTAGAGGCTCTTGTTTGCTTGAGCTAAGCTTCC
TTGCCACAAATTGTAGCTTCAGCTATTTCAGTTCGAGTTGTTGCTCGTCTTTCTTACTTGCCTCTCTTTCAAAGTTTGGT
TTACACTAGTGATTGCTTCTATAAAAATCTTCATCACTGGCAATTCTCCATA---TAGGGAATATCTTATACGCATTGCA
GCCGAATCTTAGAAGATCCAGTGTAGTCCGGCTGGATATCTGGCAATACACAGTGTCAGTTTCTTTTGTTGAAATGAACA
AAGGCTCTTAATTAAGGTCAAACTTACATGACCAAAACACCTGCATTCTGCATCTGTTAGTCTATTAAGAACTTAAGATA
CAATTTGGACTACTAAAATTAGTATCTAGTA------TTAATCAATTTGGTAGCCTAGTGTTTTTTGCATTAGCTTTTTG
TGGTGTGTTCCTTCCAAGGGTTCCAAGAGCAATAGATTGCGAGGGCACAGCTTATGATCAATGATATTGCATTCCATGTC
AATGCCACCGGACT
>chr7D_2302
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--------------------------------------------------------CTATGCTTGTGTTGATATCCTTCC
ATTCTGAAGAAAGTGACTAATGTGCATGTGATTTTAAGATTATCAAAAGTCATTTTGATACGCGTTCGAAATATGTGCTA
ACTGTTTGATCCACGTGATGTTTCTTTTTTCCTGGACTGAAGAAT---TATATTGTTCTTTTATCTATTGGCCATTT---
TAGTACTTGCTACTTAATTAGCAATCCAAGCATGTTGTTTCCTCTTTCTAAGCTTGTTCTAGCTGACTAATAAATGCGTG
GCAGT----TTATTCTCCTAATTTGTTTTCTGGCGAGTTTTACCTGATGTTTAGAAGAGGATGTTGTTAGCTAGTTCACT
TCAGCTAGCT---------------------------------------AGAGGCTCTTGTTTGCTTGAGCTAAGCTTCC
TTGCCACAAGTTGTAGTTTCATCTATTTCAGTTCGAGTTGTTGCTCGTCTTACTTACTTGCCTCTCTTTGAAAGTTCGGT
TTACACTAGTGATTGCTTCCAGAAAAATCTTCATCACTGGCAATTCTCCATA---TAGGGAATATCTTATACGCATTGCA
GTCGAATCTTAGAAGATCCAGTGCAGTCCGACTGGATATTTGGCAATACACAGTGTCAGTTTCTTTTGTTGAAATGAACA
GAGGCTCTTAATTAAGGTCAAACTTACATGACTGAAACACCTGCATTCTGCAACTGTGAGTCTGTTAAGA----------
--------------------------------------------------------------------------------
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--------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---S-------------------------S--S--S-SSS---------------------
S---------------S----SS-SSSSSS---------------------S-------------------S--------
------------------------S-------------------------------------------------------
-S-----S----------------S---S---------S-----------------------------------------
------------------------------------------------------------S-------------------
---------------S--------S-----------------------------S-------------------------
----------S--------------S----------------------------------S--S----------------
--S----------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------S------------------------------S-------------------S-----------S--
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------S-S---------------------------------------S---------
S------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------S---------------S-S-----------
-------------------S---S--------------------------------------------------------
----------SSSSSS-----------------S---S---------------------S--------------------
--------------S-----------------------------------------------S-----------------
----------------------------------------------------S---------------------------
---------------------------------------------S----------------------------------
-------------------S------------------------------------------------------------
-------------------------------------------SSSS---------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------SS----------------------------
----------------------------------------------SS-----------S--------------------
--------------------------------------S-S--------S----------------------------S-
-------------------------------SSSSSS-------------------------------------------
--S---------------S-------S---S-----------S------S---S--------------------------
--------------
>forward_419
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
AGCTATCTTGGAGGTCCGC-------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2260
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CGTACCCTCAAGAGCTGCAA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
