Multiple sequence alignment - TraesCS3D01G454300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G454300 chr3D 100.000 3536 0 0 1 3536 560958950 560962485 0.000000e+00 6530.0
1 TraesCS3D01G454300 chr3D 96.409 362 10 2 3176 3536 141357196 141356837 8.450000e-166 593.0
2 TraesCS3D01G454300 chr3D 96.507 229 6 2 3174 3401 560963592 560963365 9.270000e-101 377.0
3 TraesCS3D01G454300 chr3D 93.249 237 13 3 3160 3395 141355426 141355660 2.610000e-91 346.0
4 TraesCS3D01G454300 chr3D 100.000 28 0 0 294 321 560949301 560949328 6.000000e-03 52.8
5 TraesCS3D01G454300 chr3B 92.610 1908 93 18 704 2575 747533992 747535887 0.000000e+00 2699.0
6 TraesCS3D01G454300 chr3B 86.036 666 48 14 4 653 747533064 747533700 0.000000e+00 673.0
7 TraesCS3D01G454300 chr3B 82.209 489 48 22 24 488 747569634 747570107 5.540000e-103 385.0
8 TraesCS3D01G454300 chr3B 93.182 44 3 0 656 699 747533856 747533899 8.190000e-07 65.8
9 TraesCS3D01G454300 chr3A 86.193 1492 158 22 1063 2541 697203112 697201656 0.000000e+00 1570.0
10 TraesCS3D01G454300 chr3A 95.588 816 21 8 2372 3173 697063938 697064752 0.000000e+00 1293.0
11 TraesCS3D01G454300 chr3A 90.492 610 29 14 837 1425 697063344 697063945 0.000000e+00 778.0
12 TraesCS3D01G454300 chr3A 85.382 602 40 8 4 598 697062684 697063244 6.580000e-162 580.0
13 TraesCS3D01G454300 chr3A 86.036 222 23 5 259 480 697071677 697071890 7.630000e-57 231.0
14 TraesCS3D01G454300 chr3A 92.553 94 7 0 710 803 697063251 697063344 6.160000e-28 135.0
15 TraesCS3D01G454300 chr4D 96.712 365 10 2 3173 3536 418854879 418854516 1.090000e-169 606.0
16 TraesCS3D01G454300 chr4D 96.861 223 6 1 3174 3395 418853117 418853339 4.310000e-99 372.0
17 TraesCS3D01G454300 chr6D 95.633 229 9 1 3174 3401 276589272 276589044 2.010000e-97 366.0
18 TraesCS3D01G454300 chr1D 95.197 229 10 1 3174 3401 312218005 312217777 9.330000e-96 361.0
19 TraesCS3D01G454300 chr5D 95.536 224 8 2 3174 3395 215021162 215021385 1.210000e-94 357.0
20 TraesCS3D01G454300 chr5D 95.133 226 9 2 3172 3395 418067114 418067339 4.340000e-94 355.0
21 TraesCS3D01G454300 chr7D 99.254 134 1 0 3403 3536 63462148 63462281 3.530000e-60 243.0
22 TraesCS3D01G454300 chr7B 92.537 134 4 1 3403 3536 3866799 3866926 1.680000e-43 187.0
23 TraesCS3D01G454300 chr7A 98.701 77 1 0 3460 3536 66251278 66251354 1.710000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G454300 chr3D 560958950 560962485 3535 False 6530.000000 6530 100.000000 1 3536 1 chr3D.!!$F3 3535
1 TraesCS3D01G454300 chr3B 747533064 747535887 2823 False 1145.933333 2699 90.609333 4 2575 3 chr3B.!!$F2 2571
2 TraesCS3D01G454300 chr3A 697201656 697203112 1456 True 1570.000000 1570 86.193000 1063 2541 1 chr3A.!!$R1 1478
3 TraesCS3D01G454300 chr3A 697062684 697064752 2068 False 696.500000 1293 91.003750 4 3173 4 chr3A.!!$F2 3169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 562 0.030773 GATCTACGCGGCATCAGACA 59.969 55.0 12.47 0.0 0.00 3.41 F
702 897 0.109532 TGAACCGCCATCCAAACTGA 59.890 50.0 0.00 0.0 0.00 3.41 F
1937 2272 0.034477 TTTCCCGAGGCCAAGGAATC 60.034 55.0 18.61 0.0 39.36 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2272 0.031314 CATGATCCACTCCGACTCCG 59.969 60.0 0.00 0.00 0.00 4.63 R
2469 2810 0.109643 GCACAATGATGAGCGCAACA 60.110 50.0 11.47 10.29 33.51 3.33 R
3311 3666 0.032267 GCCCCGCTAGTCAGATACAC 59.968 60.0 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 112 6.036577 TCTGCTTTTCCTTGAAAACAAACT 57.963 33.333 0.00 0.00 36.73 2.66
109 113 6.463360 TCTGCTTTTCCTTGAAAACAAACTT 58.537 32.000 0.00 0.00 36.73 2.66
145 149 7.552687 TCTGACAAGAACAACAAGAAACTACAT 59.447 33.333 0.00 0.00 0.00 2.29
200 204 4.136051 CCGGGTTACAAGTTGGAACTTTA 58.864 43.478 26.32 0.00 46.52 1.85
203 207 5.504501 CGGGTTACAAGTTGGAACTTTACAC 60.505 44.000 26.32 11.44 46.52 2.90
242 253 7.179160 CAGGAACTTGAAAGGGGAATAAGAAAT 59.821 37.037 0.00 0.00 34.60 2.17
246 257 7.010160 ACTTGAAAGGGGAATAAGAAATCACA 58.990 34.615 0.00 0.00 0.00 3.58
247 258 7.177392 ACTTGAAAGGGGAATAAGAAATCACAG 59.823 37.037 0.00 0.00 0.00 3.66
248 259 6.789268 TGAAAGGGGAATAAGAAATCACAGA 58.211 36.000 0.00 0.00 0.00 3.41
249 260 6.886459 TGAAAGGGGAATAAGAAATCACAGAG 59.114 38.462 0.00 0.00 0.00 3.35
250 261 6.642733 AAGGGGAATAAGAAATCACAGAGA 57.357 37.500 0.00 0.00 0.00 3.10
251 262 5.995446 AGGGGAATAAGAAATCACAGAGAC 58.005 41.667 0.00 0.00 0.00 3.36
252 263 5.488919 AGGGGAATAAGAAATCACAGAGACA 59.511 40.000 0.00 0.00 0.00 3.41
253 264 6.012508 AGGGGAATAAGAAATCACAGAGACAA 60.013 38.462 0.00 0.00 0.00 3.18
254 265 6.830838 GGGGAATAAGAAATCACAGAGACAAT 59.169 38.462 0.00 0.00 0.00 2.71
255 266 7.993183 GGGGAATAAGAAATCACAGAGACAATA 59.007 37.037 0.00 0.00 0.00 1.90
256 267 9.396022 GGGAATAAGAAATCACAGAGACAATAA 57.604 33.333 0.00 0.00 0.00 1.40
267 293 4.815308 ACAGAGACAATAAGATGCAGATGC 59.185 41.667 0.00 0.00 42.50 3.91
285 311 5.049474 CAGATGCTGTACTTGTTGCAAGTTA 60.049 40.000 17.91 8.54 38.96 2.24
301 327 7.291411 TGCAAGTTACCAATAAAAGGCTTAA 57.709 32.000 0.00 0.00 0.00 1.85
302 328 7.375053 TGCAAGTTACCAATAAAAGGCTTAAG 58.625 34.615 0.00 0.00 0.00 1.85
303 329 7.231722 TGCAAGTTACCAATAAAAGGCTTAAGA 59.768 33.333 6.67 0.00 0.00 2.10
304 330 8.085909 GCAAGTTACCAATAAAAGGCTTAAGAA 58.914 33.333 6.67 0.00 0.00 2.52
305 331 9.626045 CAAGTTACCAATAAAAGGCTTAAGAAG 57.374 33.333 6.67 0.00 0.00 2.85
306 332 9.582648 AAGTTACCAATAAAAGGCTTAAGAAGA 57.417 29.630 6.67 0.00 0.00 2.87
307 333 9.755122 AGTTACCAATAAAAGGCTTAAGAAGAT 57.245 29.630 6.67 0.00 0.00 2.40
309 335 7.646548 ACCAATAAAAGGCTTAAGAAGATCC 57.353 36.000 6.67 0.00 0.00 3.36
310 336 7.182060 ACCAATAAAAGGCTTAAGAAGATCCA 58.818 34.615 6.67 0.00 0.00 3.41
311 337 7.841222 ACCAATAAAAGGCTTAAGAAGATCCAT 59.159 33.333 6.67 0.00 0.00 3.41
312 338 8.699130 CCAATAAAAGGCTTAAGAAGATCCATT 58.301 33.333 6.67 0.00 0.00 3.16
313 339 9.525409 CAATAAAAGGCTTAAGAAGATCCATTG 57.475 33.333 6.67 3.62 0.00 2.82
314 340 5.588958 AAAGGCTTAAGAAGATCCATTGC 57.411 39.130 6.67 0.00 0.00 3.56
315 341 4.240881 AGGCTTAAGAAGATCCATTGCA 57.759 40.909 6.67 0.00 0.00 4.08
316 342 4.603131 AGGCTTAAGAAGATCCATTGCAA 58.397 39.130 6.67 0.00 0.00 4.08
317 343 4.643784 AGGCTTAAGAAGATCCATTGCAAG 59.356 41.667 6.67 0.00 0.00 4.01
321 347 6.677431 GCTTAAGAAGATCCATTGCAAGACTG 60.677 42.308 6.67 0.00 0.00 3.51
324 350 5.181748 AGAAGATCCATTGCAAGACTGTAC 58.818 41.667 4.94 0.00 0.00 2.90
330 356 2.543777 TTGCAAGACTGTACCCAGAC 57.456 50.000 0.00 0.00 41.50 3.51
402 443 1.403323 TCACACACGATTTTTGCTGCA 59.597 42.857 0.00 0.00 0.00 4.41
443 485 1.466167 CAGAAGGAGACCAAACATGCG 59.534 52.381 0.00 0.00 0.00 4.73
447 489 1.421485 GAGACCAAACATGCGAGCG 59.579 57.895 0.00 0.00 0.00 5.03
448 490 1.970917 GAGACCAAACATGCGAGCGG 61.971 60.000 0.00 0.00 0.00 5.52
480 522 0.031857 CAGAGATCACAGCCGCTAGG 59.968 60.000 0.00 0.00 41.62 3.02
520 562 0.030773 GATCTACGCGGCATCAGACA 59.969 55.000 12.47 0.00 0.00 3.41
572 614 4.431131 CGCTGGGGTTGGCCTCAT 62.431 66.667 3.32 0.00 45.80 2.90
576 618 0.988145 CTGGGGTTGGCCTCATAGGA 60.988 60.000 3.32 0.00 45.80 2.94
583 625 0.174845 TGGCCTCATAGGAAACGTCG 59.825 55.000 3.32 0.00 37.67 5.12
600 642 2.639065 GTCGGCCAGATAACATTTCCA 58.361 47.619 2.24 0.00 0.00 3.53
604 646 4.819630 TCGGCCAGATAACATTTCCATTAC 59.180 41.667 2.24 0.00 0.00 1.89
636 678 3.487207 GCAAGTAACAAGCTTCAGCAAAC 59.513 43.478 0.00 0.00 45.16 2.93
690 885 4.634443 ACAAATATCCTAGTGTTGAACCGC 59.366 41.667 0.00 0.00 0.00 5.68
695 890 1.369625 CTAGTGTTGAACCGCCATCC 58.630 55.000 0.00 0.00 0.00 3.51
699 894 0.671251 TGTTGAACCGCCATCCAAAC 59.329 50.000 0.00 0.00 0.00 2.93
702 897 0.109532 TGAACCGCCATCCAAACTGA 59.890 50.000 0.00 0.00 0.00 3.41
709 992 2.612972 CGCCATCCAAACTGACAGTACT 60.613 50.000 8.91 0.00 0.00 2.73
760 1043 4.898320 ACAAAGCAATTTGGAGGGATTTC 58.102 39.130 5.77 0.00 36.30 2.17
799 1098 2.571202 TGGAGGTTAGTGCACATGATGA 59.429 45.455 21.04 0.00 0.00 2.92
803 1102 4.592942 AGGTTAGTGCACATGATGAACAT 58.407 39.130 21.04 7.72 39.74 2.71
808 1107 3.575256 AGTGCACATGATGAACATTTGGT 59.425 39.130 21.04 0.00 39.74 3.67
825 1124 1.080569 GTTGAACCCGCTTGCATGG 60.081 57.895 1.34 0.00 0.00 3.66
828 1127 1.748879 GAACCCGCTTGCATGGCTA 60.749 57.895 9.85 0.00 0.00 3.93
834 1133 2.362736 CCGCTTGCATGGCTATGATAT 58.637 47.619 15.09 0.00 36.36 1.63
896 1195 3.842925 TTGACGGCCTGGTTCTGGC 62.843 63.158 0.00 7.19 45.73 4.85
930 1237 1.668793 CAGTGTGGATGCTGCACGA 60.669 57.895 3.57 0.00 41.94 4.35
931 1238 1.022982 CAGTGTGGATGCTGCACGAT 61.023 55.000 3.57 0.00 41.94 3.73
932 1239 1.022982 AGTGTGGATGCTGCACGATG 61.023 55.000 3.57 0.00 41.94 3.84
934 1241 2.825387 TGGATGCTGCACGATGGC 60.825 61.111 3.57 0.00 0.00 4.40
935 1242 2.515523 GGATGCTGCACGATGGCT 60.516 61.111 3.57 0.00 34.04 4.75
936 1243 2.117156 GGATGCTGCACGATGGCTT 61.117 57.895 3.57 0.00 34.04 4.35
977 1286 8.333235 TCCAAGTCAGGTTTACATACCATAATT 58.667 33.333 0.00 0.00 40.82 1.40
978 1287 9.621629 CCAAGTCAGGTTTACATACCATAATTA 57.378 33.333 0.00 0.00 40.82 1.40
991 1300 8.849844 ACATACCATAATTATCCCCAGATGAAT 58.150 33.333 0.00 0.00 33.67 2.57
998 1307 4.127918 TATCCCCAGATGAATACGGAGT 57.872 45.455 0.00 0.00 38.13 3.85
1017 1331 4.917415 GGAGTGATGAACCAAAAATTCACG 59.083 41.667 0.00 0.00 38.84 4.35
1031 1345 0.245266 TTCACGATGAGCGCAACCTA 59.755 50.000 11.47 0.00 46.04 3.08
1094 1408 1.455383 CCAAGTCCAACCACTGGCAC 61.455 60.000 0.00 0.00 45.98 5.01
1101 1415 1.199097 CCAACCACTGGCACGAATAAC 59.801 52.381 0.00 0.00 38.76 1.89
1105 1419 0.370273 CACTGGCACGAATAACGCTC 59.630 55.000 0.00 0.00 46.94 5.03
1107 1421 0.924090 CTGGCACGAATAACGCTCTC 59.076 55.000 0.00 0.00 46.94 3.20
1296 1631 2.497293 CTACACGCGGTGGCCATA 59.503 61.111 9.72 0.00 37.94 2.74
1512 1847 4.583871 AGGAGAAATTCGTGAAGATGCTT 58.416 39.130 0.00 0.00 0.00 3.91
1518 1853 2.662006 TCGTGAAGATGCTTCTCCTG 57.338 50.000 2.09 0.00 0.00 3.86
1561 1896 4.301505 GCCTCATGTTCGGCAAGA 57.698 55.556 15.26 0.00 45.59 3.02
1692 2027 2.059756 TGGAGAACCAGATCCCCTTT 57.940 50.000 0.00 0.00 41.77 3.11
1759 2094 4.135153 CCGTCGAGGAGCTGGTGG 62.135 72.222 6.70 0.00 45.00 4.61
1782 2117 2.125552 TGCTTCGACGGCATCTGG 60.126 61.111 8.00 0.00 34.56 3.86
1897 2232 1.447314 CCGGAGAACAAGTACCGCC 60.447 63.158 0.00 0.00 43.37 6.13
1914 2249 4.200283 CTCCTCTCGGTGCCGCTC 62.200 72.222 5.64 0.00 39.59 5.03
1918 2253 3.288308 CTCTCGGTGCCGCTCAAGT 62.288 63.158 5.64 0.00 39.59 3.16
1922 2257 2.954611 GGTGCCGCTCAAGTTTCC 59.045 61.111 0.00 0.00 0.00 3.13
1935 2270 1.074248 GTTTCCCGAGGCCAAGGAA 59.926 57.895 17.06 16.04 37.89 3.36
1936 2271 0.323451 GTTTCCCGAGGCCAAGGAAT 60.323 55.000 18.61 0.00 39.36 3.01
1937 2272 0.034477 TTTCCCGAGGCCAAGGAATC 60.034 55.000 18.61 0.00 39.36 2.52
2004 2345 2.112297 GTGTGGTTCCGGAAGCCA 59.888 61.111 36.30 30.44 37.97 4.75
2006 2347 1.303236 TGTGGTTCCGGAAGCCATG 60.303 57.895 36.30 0.00 37.97 3.66
2271 2612 3.838271 TGGATCCTCGGCAGCGTC 61.838 66.667 14.23 0.00 0.00 5.19
2370 2711 4.615815 GGCGGGATGATCAGCGCT 62.616 66.667 23.30 2.64 0.00 5.92
2515 2856 2.412870 TGTTGCAGACAATCTACACCG 58.587 47.619 0.09 0.00 38.27 4.94
2527 2868 1.693062 TCTACACCGTTTTGGGCTACA 59.307 47.619 0.00 0.00 44.64 2.74
2555 2896 3.057734 AGACGATTTCGAGAACCAACAC 58.942 45.455 7.01 0.00 43.02 3.32
2556 2897 2.798283 GACGATTTCGAGAACCAACACA 59.202 45.455 7.01 0.00 43.02 3.72
2557 2898 3.199677 ACGATTTCGAGAACCAACACAA 58.800 40.909 7.01 0.00 43.02 3.33
2558 2899 3.623960 ACGATTTCGAGAACCAACACAAA 59.376 39.130 7.01 0.00 43.02 2.83
2559 2900 4.274950 ACGATTTCGAGAACCAACACAAAT 59.725 37.500 7.01 0.00 43.02 2.32
2616 2965 6.918022 GGTAACTTGGTCAATCTTGAAACTTG 59.082 38.462 0.00 0.00 39.21 3.16
2622 2971 2.892852 TCAATCTTGAAACTTGGCCCAG 59.107 45.455 0.00 0.00 33.55 4.45
2782 3136 3.325293 TTGTTTTCCAGCAGCAACAAA 57.675 38.095 5.69 0.00 36.44 2.83
2797 3151 5.640357 CAGCAACAAATAAGGCATTTCATGT 59.360 36.000 0.00 0.00 34.49 3.21
2812 3166 6.478344 GCATTTCATGTTGTAACCAAACTCAA 59.522 34.615 0.00 0.00 30.94 3.02
2888 3242 5.424573 AGTTACATGAGGGGGAAGTAAGTAC 59.575 44.000 0.00 0.00 0.00 2.73
2953 3307 5.885465 ACAGAAGAGGGAAGAAAACATGAT 58.115 37.500 0.00 0.00 0.00 2.45
2974 3328 9.117183 CATGATGACTGGAATGATTTAGAAGAA 57.883 33.333 0.00 0.00 0.00 2.52
2979 3333 7.890127 TGACTGGAATGATTTAGAAGAACCATT 59.110 33.333 0.00 0.00 0.00 3.16
3004 3358 1.053424 ACAGAACGGCCAAGGTTAGA 58.947 50.000 2.24 0.00 0.00 2.10
3060 3414 6.619801 AACTTGTCTCACTGAAATTGGTAC 57.380 37.500 0.00 0.00 0.00 3.34
3061 3415 5.680619 ACTTGTCTCACTGAAATTGGTACA 58.319 37.500 0.00 0.00 0.00 2.90
3104 3458 1.036707 TGCTTGGTACTTTGGTTGGC 58.963 50.000 0.00 0.00 0.00 4.52
3105 3459 0.317160 GCTTGGTACTTTGGTTGGCC 59.683 55.000 0.00 0.00 0.00 5.36
3180 3535 5.723672 TGGAGACAGAAGAACGAGTTAAT 57.276 39.130 0.00 0.00 35.01 1.40
3181 3536 6.097915 TGGAGACAGAAGAACGAGTTAATT 57.902 37.500 0.00 0.00 35.01 1.40
3182 3537 5.926542 TGGAGACAGAAGAACGAGTTAATTG 59.073 40.000 0.00 0.00 35.01 2.32
3183 3538 5.163943 GGAGACAGAAGAACGAGTTAATTGC 60.164 44.000 0.00 0.00 0.00 3.56
3184 3539 5.297547 AGACAGAAGAACGAGTTAATTGCA 58.702 37.500 0.00 0.00 0.00 4.08
3185 3540 5.177696 AGACAGAAGAACGAGTTAATTGCAC 59.822 40.000 0.00 0.00 0.00 4.57
3186 3541 4.814234 ACAGAAGAACGAGTTAATTGCACA 59.186 37.500 0.00 0.00 0.00 4.57
3187 3542 5.050091 ACAGAAGAACGAGTTAATTGCACAG 60.050 40.000 0.00 0.00 0.00 3.66
3188 3543 5.177511 CAGAAGAACGAGTTAATTGCACAGA 59.822 40.000 0.00 0.00 0.00 3.41
3189 3544 5.758296 AGAAGAACGAGTTAATTGCACAGAA 59.242 36.000 0.00 0.00 0.00 3.02
3190 3545 5.597813 AGAACGAGTTAATTGCACAGAAG 57.402 39.130 0.00 0.00 0.00 2.85
3191 3546 5.057149 AGAACGAGTTAATTGCACAGAAGT 58.943 37.500 0.00 0.00 0.00 3.01
3192 3547 6.220930 AGAACGAGTTAATTGCACAGAAGTA 58.779 36.000 0.00 0.00 0.00 2.24
3193 3548 5.840940 ACGAGTTAATTGCACAGAAGTAC 57.159 39.130 0.00 0.00 0.00 2.73
3194 3549 4.689345 ACGAGTTAATTGCACAGAAGTACC 59.311 41.667 0.00 0.00 0.00 3.34
3195 3550 4.688879 CGAGTTAATTGCACAGAAGTACCA 59.311 41.667 0.00 0.00 0.00 3.25
3196 3551 5.389516 CGAGTTAATTGCACAGAAGTACCAC 60.390 44.000 0.00 0.00 0.00 4.16
3197 3552 5.373222 AGTTAATTGCACAGAAGTACCACA 58.627 37.500 0.00 0.00 0.00 4.17
3198 3553 5.825679 AGTTAATTGCACAGAAGTACCACAA 59.174 36.000 0.00 0.00 0.00 3.33
3199 3554 6.490040 AGTTAATTGCACAGAAGTACCACAAT 59.510 34.615 0.00 0.00 0.00 2.71
3200 3555 4.771590 ATTGCACAGAAGTACCACAATG 57.228 40.909 0.00 0.00 0.00 2.82
3201 3556 2.503331 TGCACAGAAGTACCACAATGG 58.497 47.619 0.00 0.00 45.02 3.16
3202 3557 1.812571 GCACAGAAGTACCACAATGGG 59.187 52.381 0.00 0.00 43.37 4.00
3203 3558 2.436417 CACAGAAGTACCACAATGGGG 58.564 52.381 0.00 0.00 43.37 4.96
3204 3559 1.271926 ACAGAAGTACCACAATGGGGC 60.272 52.381 0.00 0.00 43.37 5.80
3205 3560 1.072266 AGAAGTACCACAATGGGGCA 58.928 50.000 0.00 0.00 43.37 5.36
3206 3561 1.640670 AGAAGTACCACAATGGGGCAT 59.359 47.619 0.00 0.00 43.37 4.40
3207 3562 2.024414 GAAGTACCACAATGGGGCATC 58.976 52.381 0.00 0.00 43.37 3.91
3208 3563 0.998928 AGTACCACAATGGGGCATCA 59.001 50.000 0.00 0.00 43.37 3.07
3209 3564 1.102978 GTACCACAATGGGGCATCAC 58.897 55.000 0.00 0.00 43.37 3.06
3210 3565 0.701147 TACCACAATGGGGCATCACA 59.299 50.000 0.00 0.00 43.37 3.58
3211 3566 0.041535 ACCACAATGGGGCATCACAT 59.958 50.000 0.00 0.00 43.37 3.21
3212 3567 0.462375 CCACAATGGGGCATCACATG 59.538 55.000 0.00 0.00 32.67 3.21
3224 3579 3.976793 CATCACATGCAGATTGGTACC 57.023 47.619 4.43 4.43 0.00 3.34
3225 3580 3.281158 CATCACATGCAGATTGGTACCA 58.719 45.455 11.60 11.60 0.00 3.25
3226 3581 2.710377 TCACATGCAGATTGGTACCAC 58.290 47.619 16.04 3.90 0.00 4.16
3227 3582 1.398041 CACATGCAGATTGGTACCACG 59.602 52.381 16.04 4.73 0.00 4.94
3228 3583 1.277842 ACATGCAGATTGGTACCACGA 59.722 47.619 16.04 0.15 0.00 4.35
3229 3584 2.092968 ACATGCAGATTGGTACCACGAT 60.093 45.455 16.04 6.42 0.00 3.73
3230 3585 2.779755 TGCAGATTGGTACCACGATT 57.220 45.000 16.04 0.00 0.00 3.34
3231 3586 2.355197 TGCAGATTGGTACCACGATTG 58.645 47.619 16.04 11.84 0.00 2.67
3232 3587 1.064060 GCAGATTGGTACCACGATTGC 59.936 52.381 16.04 17.61 0.00 3.56
3233 3588 2.632377 CAGATTGGTACCACGATTGCT 58.368 47.619 16.04 2.88 0.00 3.91
3234 3589 3.792401 CAGATTGGTACCACGATTGCTA 58.208 45.455 16.04 0.00 0.00 3.49
3235 3590 4.188462 CAGATTGGTACCACGATTGCTAA 58.812 43.478 16.04 0.00 0.00 3.09
3236 3591 4.816385 CAGATTGGTACCACGATTGCTAAT 59.184 41.667 16.04 1.24 0.00 1.73
3237 3592 5.296780 CAGATTGGTACCACGATTGCTAATT 59.703 40.000 16.04 0.00 0.00 1.40
3238 3593 5.885912 AGATTGGTACCACGATTGCTAATTT 59.114 36.000 16.04 0.00 0.00 1.82
3239 3594 5.968528 TTGGTACCACGATTGCTAATTTT 57.031 34.783 16.04 0.00 0.00 1.82
3240 3595 5.968528 TGGTACCACGATTGCTAATTTTT 57.031 34.783 11.60 0.00 0.00 1.94
3241 3596 5.704888 TGGTACCACGATTGCTAATTTTTG 58.295 37.500 11.60 0.00 0.00 2.44
3242 3597 4.561213 GGTACCACGATTGCTAATTTTTGC 59.439 41.667 7.15 0.00 0.00 3.68
3243 3598 3.241701 ACCACGATTGCTAATTTTTGCG 58.758 40.909 0.00 0.00 0.00 4.85
3244 3599 3.241701 CCACGATTGCTAATTTTTGCGT 58.758 40.909 0.00 0.00 0.00 5.24
3245 3600 3.059306 CCACGATTGCTAATTTTTGCGTG 59.941 43.478 0.00 0.00 45.03 5.34
3246 3601 3.668191 CACGATTGCTAATTTTTGCGTGT 59.332 39.130 0.00 0.00 41.81 4.49
3247 3602 3.911964 ACGATTGCTAATTTTTGCGTGTC 59.088 39.130 0.00 0.00 0.00 3.67
3248 3603 3.911365 CGATTGCTAATTTTTGCGTGTCA 59.089 39.130 0.00 0.00 0.00 3.58
3249 3604 4.029418 CGATTGCTAATTTTTGCGTGTCAG 59.971 41.667 0.00 0.00 0.00 3.51
3250 3605 3.980646 TGCTAATTTTTGCGTGTCAGT 57.019 38.095 0.00 0.00 0.00 3.41
3251 3606 5.425577 TTGCTAATTTTTGCGTGTCAGTA 57.574 34.783 0.00 0.00 0.00 2.74
3252 3607 4.778904 TGCTAATTTTTGCGTGTCAGTAC 58.221 39.130 0.00 0.00 0.00 2.73
3253 3608 4.513692 TGCTAATTTTTGCGTGTCAGTACT 59.486 37.500 0.00 0.00 0.00 2.73
3254 3609 5.697178 TGCTAATTTTTGCGTGTCAGTACTA 59.303 36.000 0.00 0.00 0.00 1.82
3255 3610 6.203145 TGCTAATTTTTGCGTGTCAGTACTAA 59.797 34.615 0.00 0.00 0.00 2.24
3256 3611 6.518736 GCTAATTTTTGCGTGTCAGTACTAAC 59.481 38.462 0.00 0.00 0.00 2.34
3257 3612 5.994887 ATTTTTGCGTGTCAGTACTAACA 57.005 34.783 0.00 0.00 0.00 2.41
3258 3613 5.994887 TTTTTGCGTGTCAGTACTAACAT 57.005 34.783 1.22 0.00 0.00 2.71
3259 3614 5.994887 TTTTGCGTGTCAGTACTAACATT 57.005 34.783 1.22 0.00 0.00 2.71
3260 3615 4.983215 TTGCGTGTCAGTACTAACATTG 57.017 40.909 1.22 0.00 0.00 2.82
3261 3616 2.734606 TGCGTGTCAGTACTAACATTGC 59.265 45.455 15.77 15.77 33.11 3.56
3262 3617 2.993899 GCGTGTCAGTACTAACATTGCT 59.006 45.455 15.49 0.00 31.13 3.91
3263 3618 3.060895 GCGTGTCAGTACTAACATTGCTC 59.939 47.826 15.49 0.00 31.13 4.26
3264 3619 4.486090 CGTGTCAGTACTAACATTGCTCT 58.514 43.478 1.22 0.00 0.00 4.09
3265 3620 5.637809 CGTGTCAGTACTAACATTGCTCTA 58.362 41.667 1.22 0.00 0.00 2.43
3266 3621 6.090783 CGTGTCAGTACTAACATTGCTCTAA 58.909 40.000 1.22 0.00 0.00 2.10
3267 3622 6.251589 CGTGTCAGTACTAACATTGCTCTAAG 59.748 42.308 1.22 0.00 0.00 2.18
3268 3623 7.091443 GTGTCAGTACTAACATTGCTCTAAGT 58.909 38.462 1.22 0.00 0.00 2.24
3269 3624 7.599245 GTGTCAGTACTAACATTGCTCTAAGTT 59.401 37.037 1.22 0.00 0.00 2.66
3270 3625 8.148351 TGTCAGTACTAACATTGCTCTAAGTTT 58.852 33.333 0.00 0.00 0.00 2.66
3271 3626 8.989980 GTCAGTACTAACATTGCTCTAAGTTTT 58.010 33.333 0.00 0.00 0.00 2.43
3272 3627 9.555727 TCAGTACTAACATTGCTCTAAGTTTTT 57.444 29.630 0.00 0.00 0.00 1.94
3273 3628 9.599322 CAGTACTAACATTGCTCTAAGTTTTTG 57.401 33.333 0.00 0.00 0.00 2.44
3274 3629 8.290325 AGTACTAACATTGCTCTAAGTTTTTGC 58.710 33.333 0.00 0.00 0.00 3.68
3275 3630 7.038154 ACTAACATTGCTCTAAGTTTTTGCA 57.962 32.000 0.00 0.00 0.00 4.08
3276 3631 7.488322 ACTAACATTGCTCTAAGTTTTTGCAA 58.512 30.769 0.00 0.00 45.62 4.08
3277 3632 7.978975 ACTAACATTGCTCTAAGTTTTTGCAAA 59.021 29.630 8.05 8.05 44.90 3.68
3278 3633 7.790823 AACATTGCTCTAAGTTTTTGCAAAT 57.209 28.000 13.65 0.00 44.90 2.32
3279 3634 8.885494 AACATTGCTCTAAGTTTTTGCAAATA 57.115 26.923 13.65 5.33 44.90 1.40
3280 3635 8.524870 ACATTGCTCTAAGTTTTTGCAAATAG 57.475 30.769 13.65 11.53 44.90 1.73
3281 3636 7.599998 ACATTGCTCTAAGTTTTTGCAAATAGG 59.400 33.333 13.65 7.07 44.90 2.57
3282 3637 6.648879 TGCTCTAAGTTTTTGCAAATAGGT 57.351 33.333 13.65 2.11 0.00 3.08
3283 3638 6.677913 TGCTCTAAGTTTTTGCAAATAGGTC 58.322 36.000 13.65 7.59 0.00 3.85
3284 3639 6.490040 TGCTCTAAGTTTTTGCAAATAGGTCT 59.510 34.615 13.65 4.73 0.00 3.85
3285 3640 7.663905 TGCTCTAAGTTTTTGCAAATAGGTCTA 59.336 33.333 13.65 0.00 0.00 2.59
3286 3641 8.512138 GCTCTAAGTTTTTGCAAATAGGTCTAA 58.488 33.333 13.65 0.00 0.00 2.10
3290 3645 8.871686 AAGTTTTTGCAAATAGGTCTAAACTG 57.128 30.769 13.65 0.00 35.47 3.16
3291 3646 6.923508 AGTTTTTGCAAATAGGTCTAAACTGC 59.076 34.615 13.65 0.00 34.40 4.40
3292 3647 4.678509 TTGCAAATAGGTCTAAACTGCG 57.321 40.909 0.00 0.00 0.00 5.18
3293 3648 3.670625 TGCAAATAGGTCTAAACTGCGT 58.329 40.909 0.00 0.00 0.00 5.24
3294 3649 4.823157 TGCAAATAGGTCTAAACTGCGTA 58.177 39.130 0.00 0.00 0.00 4.42
3295 3650 5.424757 TGCAAATAGGTCTAAACTGCGTAT 58.575 37.500 0.00 0.00 0.00 3.06
3296 3651 6.575267 TGCAAATAGGTCTAAACTGCGTATA 58.425 36.000 0.00 0.00 0.00 1.47
3297 3652 7.042950 TGCAAATAGGTCTAAACTGCGTATAA 58.957 34.615 0.00 0.00 0.00 0.98
3298 3653 7.549842 TGCAAATAGGTCTAAACTGCGTATAAA 59.450 33.333 0.00 0.00 0.00 1.40
3299 3654 7.849515 GCAAATAGGTCTAAACTGCGTATAAAC 59.150 37.037 0.00 0.00 0.00 2.01
3300 3655 8.875803 CAAATAGGTCTAAACTGCGTATAAACA 58.124 33.333 0.00 0.00 0.00 2.83
3301 3656 9.609346 AAATAGGTCTAAACTGCGTATAAACAT 57.391 29.630 0.00 0.00 0.00 2.71
3302 3657 6.903883 AGGTCTAAACTGCGTATAAACATG 57.096 37.500 0.00 0.00 0.00 3.21
3303 3658 6.403878 AGGTCTAAACTGCGTATAAACATGT 58.596 36.000 0.00 0.00 0.00 3.21
3304 3659 7.549839 AGGTCTAAACTGCGTATAAACATGTA 58.450 34.615 0.00 0.00 0.00 2.29
3305 3660 8.202137 AGGTCTAAACTGCGTATAAACATGTAT 58.798 33.333 0.00 0.00 0.00 2.29
3306 3661 8.823818 GGTCTAAACTGCGTATAAACATGTATT 58.176 33.333 0.00 0.00 0.00 1.89
3307 3662 9.632969 GTCTAAACTGCGTATAAACATGTATTG 57.367 33.333 0.00 0.00 0.00 1.90
3308 3663 9.589111 TCTAAACTGCGTATAAACATGTATTGA 57.411 29.630 0.00 0.00 0.00 2.57
3309 3664 9.632969 CTAAACTGCGTATAAACATGTATTGAC 57.367 33.333 0.00 0.00 0.00 3.18
3310 3665 6.268797 ACTGCGTATAAACATGTATTGACG 57.731 37.500 15.15 15.15 0.00 4.35
3311 3666 5.233476 ACTGCGTATAAACATGTATTGACGG 59.767 40.000 18.85 9.91 0.00 4.79
3312 3667 5.110598 TGCGTATAAACATGTATTGACGGT 58.889 37.500 18.85 0.00 0.00 4.83
3313 3668 5.005875 TGCGTATAAACATGTATTGACGGTG 59.994 40.000 18.85 0.37 0.00 4.94
3314 3669 5.005971 GCGTATAAACATGTATTGACGGTGT 59.994 40.000 18.85 0.00 0.00 4.16
3315 3670 6.198778 GCGTATAAACATGTATTGACGGTGTA 59.801 38.462 18.85 0.00 0.00 2.90
3316 3671 7.095940 GCGTATAAACATGTATTGACGGTGTAT 60.096 37.037 18.85 0.00 0.00 2.29
3317 3672 8.422457 CGTATAAACATGTATTGACGGTGTATC 58.578 37.037 0.00 0.00 0.00 2.24
3318 3673 9.472361 GTATAAACATGTATTGACGGTGTATCT 57.528 33.333 0.00 0.00 0.00 1.98
3319 3674 6.662414 AAACATGTATTGACGGTGTATCTG 57.338 37.500 0.00 0.00 0.00 2.90
3320 3675 5.592104 ACATGTATTGACGGTGTATCTGA 57.408 39.130 0.00 0.00 0.00 3.27
3321 3676 5.348986 ACATGTATTGACGGTGTATCTGAC 58.651 41.667 0.00 0.00 0.00 3.51
3322 3677 5.127194 ACATGTATTGACGGTGTATCTGACT 59.873 40.000 0.00 0.00 0.00 3.41
3323 3678 6.320418 ACATGTATTGACGGTGTATCTGACTA 59.680 38.462 0.00 0.00 0.00 2.59
3324 3679 6.373186 TGTATTGACGGTGTATCTGACTAG 57.627 41.667 0.00 0.00 0.00 2.57
3325 3680 3.777465 TTGACGGTGTATCTGACTAGC 57.223 47.619 0.00 0.00 0.00 3.42
3326 3681 1.669265 TGACGGTGTATCTGACTAGCG 59.331 52.381 7.40 7.40 36.66 4.26
3327 3682 1.002684 GACGGTGTATCTGACTAGCGG 60.003 57.143 11.84 0.00 35.66 5.52
3328 3683 0.311165 CGGTGTATCTGACTAGCGGG 59.689 60.000 0.00 0.00 31.09 6.13
3329 3684 0.674534 GGTGTATCTGACTAGCGGGG 59.325 60.000 0.00 0.00 0.00 5.73
3330 3685 0.032267 GTGTATCTGACTAGCGGGGC 59.968 60.000 0.00 0.00 0.00 5.80
3331 3686 1.113517 TGTATCTGACTAGCGGGGCC 61.114 60.000 0.00 0.00 0.00 5.80
3332 3687 1.533273 TATCTGACTAGCGGGGCCC 60.533 63.158 15.76 15.76 0.00 5.80
3380 3735 4.409718 TTTTTGCAGAAAACCCCCTTAC 57.590 40.909 0.00 0.00 30.56 2.34
3381 3736 1.611519 TTGCAGAAAACCCCCTTACG 58.388 50.000 0.00 0.00 0.00 3.18
3382 3737 0.475044 TGCAGAAAACCCCCTTACGT 59.525 50.000 0.00 0.00 0.00 3.57
3383 3738 1.133730 TGCAGAAAACCCCCTTACGTT 60.134 47.619 0.00 0.00 0.00 3.99
3384 3739 1.268625 GCAGAAAACCCCCTTACGTTG 59.731 52.381 0.00 0.00 0.00 4.10
3385 3740 2.578786 CAGAAAACCCCCTTACGTTGT 58.421 47.619 0.00 0.00 0.00 3.32
3386 3741 3.742385 CAGAAAACCCCCTTACGTTGTA 58.258 45.455 0.00 0.00 0.00 2.41
3387 3742 3.499537 CAGAAAACCCCCTTACGTTGTAC 59.500 47.826 0.00 0.00 0.00 2.90
3404 3759 7.146368 CGTTGTACGTAATCATAAGAACCTC 57.854 40.000 0.00 0.00 36.74 3.85
3405 3760 6.197842 CGTTGTACGTAATCATAAGAACCTCC 59.802 42.308 0.00 0.00 36.74 4.30
3406 3761 6.778834 TGTACGTAATCATAAGAACCTCCA 57.221 37.500 0.00 0.00 0.00 3.86
3407 3762 6.567050 TGTACGTAATCATAAGAACCTCCAC 58.433 40.000 0.00 0.00 0.00 4.02
3408 3763 5.019785 ACGTAATCATAAGAACCTCCACC 57.980 43.478 0.00 0.00 0.00 4.61
3409 3764 4.049186 CGTAATCATAAGAACCTCCACCG 58.951 47.826 0.00 0.00 0.00 4.94
3410 3765 2.622064 ATCATAAGAACCTCCACCGC 57.378 50.000 0.00 0.00 0.00 5.68
3411 3766 1.271856 TCATAAGAACCTCCACCGCA 58.728 50.000 0.00 0.00 0.00 5.69
3412 3767 1.066430 TCATAAGAACCTCCACCGCAC 60.066 52.381 0.00 0.00 0.00 5.34
3413 3768 0.108329 ATAAGAACCTCCACCGCACG 60.108 55.000 0.00 0.00 0.00 5.34
3414 3769 2.775032 TAAGAACCTCCACCGCACGC 62.775 60.000 0.00 0.00 0.00 5.34
3433 3788 2.815647 CCGCTCAAAGCCCTCGTC 60.816 66.667 0.00 0.00 38.18 4.20
3434 3789 2.262915 CGCTCAAAGCCCTCGTCT 59.737 61.111 0.00 0.00 38.18 4.18
3435 3790 2.097038 CGCTCAAAGCCCTCGTCTG 61.097 63.158 0.00 0.00 38.18 3.51
3436 3791 2.394563 GCTCAAAGCCCTCGTCTGC 61.395 63.158 0.00 0.00 34.48 4.26
3437 3792 1.004560 CTCAAAGCCCTCGTCTGCA 60.005 57.895 0.00 0.00 0.00 4.41
3438 3793 1.294659 CTCAAAGCCCTCGTCTGCAC 61.295 60.000 0.00 0.00 0.00 4.57
3439 3794 2.032681 AAAGCCCTCGTCTGCACC 59.967 61.111 0.00 0.00 0.00 5.01
3440 3795 3.883744 AAAGCCCTCGTCTGCACCG 62.884 63.158 0.00 0.00 0.00 4.94
3445 3800 4.135153 CTCGTCTGCACCGAGGGG 62.135 72.222 18.75 2.66 46.09 4.79
3446 3801 4.671590 TCGTCTGCACCGAGGGGA 62.672 66.667 0.00 0.00 36.97 4.81
3447 3802 3.461773 CGTCTGCACCGAGGGGAT 61.462 66.667 0.00 0.00 36.97 3.85
3448 3803 2.187946 GTCTGCACCGAGGGGATG 59.812 66.667 0.00 0.00 36.97 3.51
3449 3804 3.785859 TCTGCACCGAGGGGATGC 61.786 66.667 0.00 0.00 39.88 3.91
3450 3805 4.864334 CTGCACCGAGGGGATGCC 62.864 72.222 0.00 0.00 38.63 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.763356 CATGCATCTTACTAAGAAGATTGACTC 58.237 37.037 0.00 0.00 42.33 3.36
19 20 9.842775 TGATTCATGCATCTTACTAAGAAGATT 57.157 29.630 6.89 0.00 42.33 2.40
28 29 7.790027 AGTAGAACTGATTCATGCATCTTACT 58.210 34.615 6.89 4.73 37.29 2.24
29 30 8.973378 GTAGTAGAACTGATTCATGCATCTTAC 58.027 37.037 6.89 2.90 37.29 2.34
108 112 7.041030 TGTTGTTCTTGTCAGAGTTTAACACAA 60.041 33.333 0.00 0.00 0.00 3.33
109 113 6.428465 TGTTGTTCTTGTCAGAGTTTAACACA 59.572 34.615 0.00 0.00 0.00 3.72
145 149 6.492007 TTGCTTTGCATGAAAAGAAAAACA 57.508 29.167 27.46 13.58 39.12 2.83
200 204 1.134340 TCCTGGCAACTTGTAACGTGT 60.134 47.619 0.00 0.00 37.61 4.49
203 207 2.218603 AGTTCCTGGCAACTTGTAACG 58.781 47.619 5.92 0.00 32.34 3.18
242 253 5.665916 TCTGCATCTTATTGTCTCTGTGA 57.334 39.130 0.00 0.00 0.00 3.58
246 257 5.057819 CAGCATCTGCATCTTATTGTCTCT 58.942 41.667 4.79 0.00 45.16 3.10
247 258 4.815308 ACAGCATCTGCATCTTATTGTCTC 59.185 41.667 4.79 0.00 45.16 3.36
248 259 4.778579 ACAGCATCTGCATCTTATTGTCT 58.221 39.130 4.79 0.00 45.16 3.41
249 260 5.757320 AGTACAGCATCTGCATCTTATTGTC 59.243 40.000 4.79 0.00 45.16 3.18
250 261 5.678583 AGTACAGCATCTGCATCTTATTGT 58.321 37.500 4.79 1.03 45.16 2.71
251 262 6.037940 ACAAGTACAGCATCTGCATCTTATTG 59.962 38.462 4.79 5.06 45.16 1.90
252 263 6.118170 ACAAGTACAGCATCTGCATCTTATT 58.882 36.000 4.79 0.00 45.16 1.40
253 264 5.678583 ACAAGTACAGCATCTGCATCTTAT 58.321 37.500 4.79 0.00 45.16 1.73
254 265 5.089970 ACAAGTACAGCATCTGCATCTTA 57.910 39.130 4.79 0.00 45.16 2.10
255 266 3.947868 ACAAGTACAGCATCTGCATCTT 58.052 40.909 4.79 1.09 45.16 2.40
256 267 3.623906 ACAAGTACAGCATCTGCATCT 57.376 42.857 4.79 0.00 45.16 2.90
257 268 3.730061 GCAACAAGTACAGCATCTGCATC 60.730 47.826 4.79 0.00 45.16 3.91
267 293 5.493133 TTGGTAACTTGCAACAAGTACAG 57.507 39.130 12.98 0.00 37.61 2.74
285 311 7.182060 TGGATCTTCTTAAGCCTTTTATTGGT 58.818 34.615 0.00 0.00 0.00 3.67
301 327 4.298103 ACAGTCTTGCAATGGATCTTCT 57.702 40.909 0.00 0.00 0.00 2.85
302 328 4.333926 GGTACAGTCTTGCAATGGATCTTC 59.666 45.833 0.00 0.00 0.00 2.87
303 329 4.265073 GGTACAGTCTTGCAATGGATCTT 58.735 43.478 0.00 0.00 0.00 2.40
304 330 3.370953 GGGTACAGTCTTGCAATGGATCT 60.371 47.826 0.00 0.00 0.00 2.75
305 331 2.945668 GGGTACAGTCTTGCAATGGATC 59.054 50.000 0.00 0.00 0.00 3.36
306 332 2.308570 TGGGTACAGTCTTGCAATGGAT 59.691 45.455 0.00 0.00 0.00 3.41
307 333 1.702401 TGGGTACAGTCTTGCAATGGA 59.298 47.619 0.00 0.00 0.00 3.41
308 334 2.086869 CTGGGTACAGTCTTGCAATGG 58.913 52.381 0.00 0.00 39.92 3.16
309 335 2.744202 GTCTGGGTACAGTCTTGCAATG 59.256 50.000 0.00 0.00 45.14 2.82
310 336 2.639839 AGTCTGGGTACAGTCTTGCAAT 59.360 45.455 0.00 0.00 45.14 3.56
311 337 2.047061 AGTCTGGGTACAGTCTTGCAA 58.953 47.619 0.00 0.00 45.14 4.08
312 338 1.344438 CAGTCTGGGTACAGTCTTGCA 59.656 52.381 0.00 0.00 45.14 4.08
313 339 1.618837 TCAGTCTGGGTACAGTCTTGC 59.381 52.381 0.00 0.00 45.14 4.01
314 340 4.336889 TTTCAGTCTGGGTACAGTCTTG 57.663 45.455 0.00 0.00 45.14 3.02
315 341 5.568620 ATTTTCAGTCTGGGTACAGTCTT 57.431 39.130 0.00 0.00 45.14 3.01
316 342 6.017192 TCTATTTTCAGTCTGGGTACAGTCT 58.983 40.000 0.00 0.00 45.14 3.24
317 343 6.100668 GTCTATTTTCAGTCTGGGTACAGTC 58.899 44.000 0.00 0.00 45.14 3.51
321 347 7.739498 TTTTGTCTATTTTCAGTCTGGGTAC 57.261 36.000 0.00 0.00 0.00 3.34
324 350 6.490040 TCCTTTTTGTCTATTTTCAGTCTGGG 59.510 38.462 0.00 0.00 0.00 4.45
330 356 9.495572 ACTCTAGTCCTTTTTGTCTATTTTCAG 57.504 33.333 0.00 0.00 0.00 3.02
402 443 9.971922 CTTCTGAACCTCAACAGATTTTTATTT 57.028 29.630 0.00 0.00 41.71 1.40
443 485 2.125753 CACTGCTCACCTCCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
447 489 1.079266 CTCTGCACTGCTCACCTCC 60.079 63.158 1.98 0.00 0.00 4.30
448 490 0.536260 ATCTCTGCACTGCTCACCTC 59.464 55.000 1.98 0.00 0.00 3.85
488 530 0.457851 GTAGATCAGCTCACCTGCGT 59.542 55.000 0.00 0.00 41.50 5.24
490 532 0.873743 GCGTAGATCAGCTCACCTGC 60.874 60.000 0.00 0.00 41.50 4.85
520 562 2.787249 GCACGCATCTTGACGCAT 59.213 55.556 0.00 0.00 0.00 4.73
572 614 1.766494 TATCTGGCCGACGTTTCCTA 58.234 50.000 0.00 0.00 0.00 2.94
576 618 2.396590 ATGTTATCTGGCCGACGTTT 57.603 45.000 0.00 0.00 0.00 3.60
583 625 7.817418 TTAGTAATGGAAATGTTATCTGGCC 57.183 36.000 0.00 0.00 0.00 5.36
604 646 8.289618 TGAAGCTTGTTACTTGCAACTTATTAG 58.710 33.333 2.10 0.00 0.00 1.73
615 657 4.671377 TGTTTGCTGAAGCTTGTTACTTG 58.329 39.130 2.10 0.00 42.66 3.16
653 695 7.961326 AGGATATTTGTAGGCATTTTGTCTT 57.039 32.000 0.00 0.00 32.64 3.01
654 696 8.275040 ACTAGGATATTTGTAGGCATTTTGTCT 58.725 33.333 0.00 0.00 35.80 3.41
657 852 8.225603 ACACTAGGATATTTGTAGGCATTTTG 57.774 34.615 0.00 0.00 0.00 2.44
690 885 4.631813 GCTAAGTACTGTCAGTTTGGATGG 59.368 45.833 11.54 0.00 0.00 3.51
695 890 4.449068 CACAGGCTAAGTACTGTCAGTTTG 59.551 45.833 11.54 0.00 45.52 2.93
699 894 2.611518 GCACAGGCTAAGTACTGTCAG 58.388 52.381 0.00 0.00 45.52 3.51
756 1039 8.729805 TCCAAATTGCTGTGTTAAAAAGAAAT 57.270 26.923 0.00 0.00 0.00 2.17
760 1043 6.048509 ACCTCCAAATTGCTGTGTTAAAAAG 58.951 36.000 0.00 0.00 0.00 2.27
799 1098 1.408969 AGCGGGTTCAACCAAATGTT 58.591 45.000 9.35 0.00 41.02 2.71
803 1102 1.323271 TGCAAGCGGGTTCAACCAAA 61.323 50.000 9.35 0.00 41.02 3.28
808 1107 2.929903 GCCATGCAAGCGGGTTCAA 61.930 57.895 0.00 0.00 0.00 2.69
825 1124 5.636965 CAGCAGACACCACTAATATCATAGC 59.363 44.000 0.00 0.00 0.00 2.97
828 1127 5.605534 GACAGCAGACACCACTAATATCAT 58.394 41.667 0.00 0.00 0.00 2.45
834 1133 1.269723 CTCGACAGCAGACACCACTAA 59.730 52.381 0.00 0.00 0.00 2.24
896 1195 4.261741 CCACACTGAAAATTCTTGGACCAG 60.262 45.833 0.00 0.00 0.00 4.00
930 1237 5.305128 TGGAGAATTTCACAGAAAAAGCCAT 59.695 36.000 0.00 0.00 0.00 4.40
931 1238 4.648762 TGGAGAATTTCACAGAAAAAGCCA 59.351 37.500 0.00 0.00 0.00 4.75
932 1239 5.200368 TGGAGAATTTCACAGAAAAAGCC 57.800 39.130 0.00 0.00 0.00 4.35
934 1241 7.483307 TGACTTGGAGAATTTCACAGAAAAAG 58.517 34.615 0.00 0.00 0.00 2.27
935 1242 7.403312 TGACTTGGAGAATTTCACAGAAAAA 57.597 32.000 0.00 0.00 0.00 1.94
936 1243 6.039717 CCTGACTTGGAGAATTTCACAGAAAA 59.960 38.462 0.00 0.00 0.00 2.29
977 1286 3.832490 CACTCCGTATTCATCTGGGGATA 59.168 47.826 0.00 0.00 0.00 2.59
978 1287 2.634940 CACTCCGTATTCATCTGGGGAT 59.365 50.000 0.00 0.00 0.00 3.85
981 1290 3.321968 TCATCACTCCGTATTCATCTGGG 59.678 47.826 0.00 0.00 0.00 4.45
991 1300 5.765677 TGAATTTTTGGTTCATCACTCCGTA 59.234 36.000 0.00 0.00 31.07 4.02
998 1307 6.324561 TCATCGTGAATTTTTGGTTCATCA 57.675 33.333 0.00 0.00 37.84 3.07
1017 1331 0.864455 GCTCATAGGTTGCGCTCATC 59.136 55.000 9.73 0.00 33.18 2.92
1031 1345 4.128925 TCGTTTCTGATGCTTAGCTCAT 57.871 40.909 5.60 0.00 0.00 2.90
1038 1352 1.098050 GGCCATCGTTTCTGATGCTT 58.902 50.000 0.00 0.00 43.52 3.91
1094 1408 4.945292 CTCTGATTGAGAGCGTTATTCG 57.055 45.455 0.00 0.00 45.39 3.34
1105 1419 3.267860 GCCGCCGCTCTGATTGAG 61.268 66.667 0.00 0.00 45.33 3.02
1207 1524 2.434359 GCCGAGGTACCACAGCAC 60.434 66.667 15.94 0.00 0.00 4.40
1497 1832 3.529533 CAGGAGAAGCATCTTCACGAAT 58.470 45.455 0.00 0.00 35.54 3.34
1518 1853 1.220477 GAGGAGGAAGCTGCTGTCC 59.780 63.158 17.63 17.63 0.00 4.02
1591 1926 2.603473 CTCCCTGGTGACCACGGA 60.603 66.667 19.15 19.15 36.60 4.69
1651 1986 4.177229 GAGCAGGTCGAGCTTGAC 57.823 61.111 23.86 23.86 43.58 3.18
1692 2027 4.299547 AGCAGCTTGACGACGGCA 62.300 61.111 0.00 0.00 0.00 5.69
1838 2173 6.909550 AGAGGTGTAGGATGTGATAGAATC 57.090 41.667 0.00 0.00 0.00 2.52
1911 2246 2.041115 GGCCTCGGGAAACTTGAGC 61.041 63.158 0.00 0.00 33.35 4.26
1914 2249 1.244019 CCTTGGCCTCGGGAAACTTG 61.244 60.000 3.32 0.00 0.00 3.16
1918 2253 0.034477 GATTCCTTGGCCTCGGGAAA 60.034 55.000 21.77 7.74 41.60 3.13
1922 2257 2.203070 CCGATTCCTTGGCCTCGG 60.203 66.667 13.72 13.72 43.98 4.63
1935 2270 0.106669 TGATCCACTCCGACTCCGAT 60.107 55.000 0.00 0.00 38.22 4.18
1936 2271 0.106669 ATGATCCACTCCGACTCCGA 60.107 55.000 0.00 0.00 38.22 4.55
1937 2272 0.031314 CATGATCCACTCCGACTCCG 59.969 60.000 0.00 0.00 0.00 4.63
2190 2531 3.939837 CTCCATGCGCCTGACGTGT 62.940 63.158 14.72 0.00 46.11 4.49
2271 2612 1.734477 CTCCTCGTCGGTGCACTTG 60.734 63.158 17.98 10.04 0.00 3.16
2357 2698 2.541120 GCCACAGCGCTGATCATCC 61.541 63.158 42.03 19.39 0.00 3.51
2469 2810 0.109643 GCACAATGATGAGCGCAACA 60.110 50.000 11.47 10.29 33.51 3.33
2527 2868 5.987347 TGGTTCTCGAAATCGTCTACTTTTT 59.013 36.000 2.41 0.00 40.80 1.94
2555 2896 6.366877 GGACAACAAACAATCATCCTCATTTG 59.633 38.462 0.00 0.00 34.10 2.32
2556 2897 6.041865 TGGACAACAAACAATCATCCTCATTT 59.958 34.615 0.00 0.00 0.00 2.32
2557 2898 5.539574 TGGACAACAAACAATCATCCTCATT 59.460 36.000 0.00 0.00 0.00 2.57
2558 2899 5.078949 TGGACAACAAACAATCATCCTCAT 58.921 37.500 0.00 0.00 0.00 2.90
2559 2900 4.468713 TGGACAACAAACAATCATCCTCA 58.531 39.130 0.00 0.00 0.00 3.86
2622 2971 2.201732 CATATACCACGGCACAGTGTC 58.798 52.381 1.61 0.00 40.33 3.67
2797 3151 7.255451 GGATCATTCTGTTGAGTTTGGTTACAA 60.255 37.037 0.00 0.00 34.07 2.41
2812 3166 4.914983 AGTGTCAATGTGGATCATTCTGT 58.085 39.130 0.00 0.00 43.93 3.41
2953 3307 6.778821 TGGTTCTTCTAAATCATTCCAGTCA 58.221 36.000 0.00 0.00 0.00 3.41
2974 3328 3.244630 TGGCCGTTCTGTTTAGTAATGGT 60.245 43.478 0.00 0.00 32.80 3.55
2979 3333 2.369532 ACCTTGGCCGTTCTGTTTAGTA 59.630 45.455 0.00 0.00 0.00 1.82
3104 3458 7.392393 TCTCATATGGCTGTGATTGATTAATGG 59.608 37.037 2.13 0.00 0.00 3.16
3105 3459 8.331730 TCTCATATGGCTGTGATTGATTAATG 57.668 34.615 2.13 0.00 0.00 1.90
3173 3528 5.468746 TGTGGTACTTCTGTGCAATTAACTC 59.531 40.000 0.00 0.00 0.00 3.01
3174 3529 5.373222 TGTGGTACTTCTGTGCAATTAACT 58.627 37.500 0.00 0.00 0.00 2.24
3175 3530 5.682943 TGTGGTACTTCTGTGCAATTAAC 57.317 39.130 0.00 0.00 0.00 2.01
3176 3531 6.294453 CCATTGTGGTACTTCTGTGCAATTAA 60.294 38.462 0.00 0.00 31.35 1.40
3177 3532 5.182950 CCATTGTGGTACTTCTGTGCAATTA 59.817 40.000 0.00 0.00 31.35 1.40
3178 3533 4.022068 CCATTGTGGTACTTCTGTGCAATT 60.022 41.667 0.00 0.00 31.35 2.32
3179 3534 3.507233 CCATTGTGGTACTTCTGTGCAAT 59.493 43.478 0.00 0.00 31.35 3.56
3180 3535 2.884012 CCATTGTGGTACTTCTGTGCAA 59.116 45.455 0.00 0.00 31.35 4.08
3181 3536 2.503331 CCATTGTGGTACTTCTGTGCA 58.497 47.619 0.00 0.00 31.35 4.57
3182 3537 1.812571 CCCATTGTGGTACTTCTGTGC 59.187 52.381 0.00 0.00 35.17 4.57
3183 3538 2.436417 CCCCATTGTGGTACTTCTGTG 58.564 52.381 0.00 0.00 35.17 3.66
3184 3539 1.271926 GCCCCATTGTGGTACTTCTGT 60.272 52.381 0.00 0.00 35.17 3.41
3185 3540 1.271871 TGCCCCATTGTGGTACTTCTG 60.272 52.381 0.00 0.00 35.17 3.02
3186 3541 1.072266 TGCCCCATTGTGGTACTTCT 58.928 50.000 0.00 0.00 35.17 2.85
3187 3542 2.024414 GATGCCCCATTGTGGTACTTC 58.976 52.381 0.00 0.00 35.17 3.01
3188 3543 1.357420 TGATGCCCCATTGTGGTACTT 59.643 47.619 0.00 0.00 35.17 2.24
3189 3544 0.998928 TGATGCCCCATTGTGGTACT 59.001 50.000 0.00 0.00 35.17 2.73
3190 3545 1.102978 GTGATGCCCCATTGTGGTAC 58.897 55.000 0.00 0.00 35.17 3.34
3191 3546 0.701147 TGTGATGCCCCATTGTGGTA 59.299 50.000 0.00 0.00 35.17 3.25
3192 3547 0.041535 ATGTGATGCCCCATTGTGGT 59.958 50.000 0.00 0.00 35.17 4.16
3193 3548 0.462375 CATGTGATGCCCCATTGTGG 59.538 55.000 0.00 0.00 37.25 4.17
3204 3559 3.065786 GTGGTACCAATCTGCATGTGATG 59.934 47.826 18.31 0.00 0.00 3.07
3205 3560 3.282021 GTGGTACCAATCTGCATGTGAT 58.718 45.455 18.31 0.00 0.00 3.06
3206 3561 2.710377 GTGGTACCAATCTGCATGTGA 58.290 47.619 18.31 0.00 0.00 3.58
3207 3562 1.398041 CGTGGTACCAATCTGCATGTG 59.602 52.381 18.31 0.00 0.00 3.21
3208 3563 1.277842 TCGTGGTACCAATCTGCATGT 59.722 47.619 18.31 0.00 0.00 3.21
3209 3564 2.022764 TCGTGGTACCAATCTGCATG 57.977 50.000 18.31 0.00 0.00 4.06
3210 3565 2.945008 CAATCGTGGTACCAATCTGCAT 59.055 45.455 18.31 0.00 0.00 3.96
3211 3566 2.355197 CAATCGTGGTACCAATCTGCA 58.645 47.619 18.31 0.00 0.00 4.41
3212 3567 1.064060 GCAATCGTGGTACCAATCTGC 59.936 52.381 18.31 18.34 0.00 4.26
3213 3568 2.632377 AGCAATCGTGGTACCAATCTG 58.368 47.619 18.31 12.62 32.39 2.90
3214 3569 4.481368 TTAGCAATCGTGGTACCAATCT 57.519 40.909 18.31 9.69 37.45 2.40
3215 3570 5.751243 AATTAGCAATCGTGGTACCAATC 57.249 39.130 18.31 4.02 37.45 2.67
3216 3571 6.524101 AAAATTAGCAATCGTGGTACCAAT 57.476 33.333 18.31 4.43 37.45 3.16
3217 3572 5.968528 AAAATTAGCAATCGTGGTACCAA 57.031 34.783 18.31 1.51 37.45 3.67
3218 3573 5.704888 CAAAAATTAGCAATCGTGGTACCA 58.295 37.500 11.60 11.60 37.45 3.25
3219 3574 4.561213 GCAAAAATTAGCAATCGTGGTACC 59.439 41.667 4.43 4.43 37.45 3.34
3220 3575 4.262045 CGCAAAAATTAGCAATCGTGGTAC 59.738 41.667 0.00 0.00 37.45 3.34
3221 3576 4.083217 ACGCAAAAATTAGCAATCGTGGTA 60.083 37.500 0.00 0.00 36.66 3.25
3222 3577 3.241701 CGCAAAAATTAGCAATCGTGGT 58.758 40.909 0.00 0.00 39.33 4.16
3223 3578 3.059306 CACGCAAAAATTAGCAATCGTGG 59.941 43.478 0.00 0.00 41.31 4.94
3224 3579 4.216324 CACGCAAAAATTAGCAATCGTG 57.784 40.909 0.00 0.00 39.68 4.35
3225 3580 3.896122 ACACGCAAAAATTAGCAATCGT 58.104 36.364 0.00 0.00 0.00 3.73
3226 3581 3.911365 TGACACGCAAAAATTAGCAATCG 59.089 39.130 0.00 0.00 0.00 3.34
3227 3582 4.917415 ACTGACACGCAAAAATTAGCAATC 59.083 37.500 0.00 0.00 0.00 2.67
3228 3583 4.870363 ACTGACACGCAAAAATTAGCAAT 58.130 34.783 0.00 0.00 0.00 3.56
3229 3584 4.300189 ACTGACACGCAAAAATTAGCAA 57.700 36.364 0.00 0.00 0.00 3.91
3230 3585 3.980646 ACTGACACGCAAAAATTAGCA 57.019 38.095 0.00 0.00 0.00 3.49
3231 3586 5.030874 AGTACTGACACGCAAAAATTAGC 57.969 39.130 0.00 0.00 0.00 3.09
3232 3587 7.569297 TGTTAGTACTGACACGCAAAAATTAG 58.431 34.615 15.93 0.00 0.00 1.73
3233 3588 7.479897 TGTTAGTACTGACACGCAAAAATTA 57.520 32.000 15.93 0.00 0.00 1.40
3234 3589 6.366315 TGTTAGTACTGACACGCAAAAATT 57.634 33.333 15.93 0.00 0.00 1.82
3235 3590 5.994887 TGTTAGTACTGACACGCAAAAAT 57.005 34.783 15.93 0.00 0.00 1.82
3236 3591 5.994887 ATGTTAGTACTGACACGCAAAAA 57.005 34.783 21.42 0.00 31.79 1.94
3237 3592 5.743467 CAATGTTAGTACTGACACGCAAAA 58.257 37.500 21.42 0.00 31.79 2.44
3238 3593 4.319190 GCAATGTTAGTACTGACACGCAAA 60.319 41.667 26.41 7.24 33.72 3.68
3239 3594 3.185594 GCAATGTTAGTACTGACACGCAA 59.814 43.478 26.41 7.82 33.72 4.85
3240 3595 2.734606 GCAATGTTAGTACTGACACGCA 59.265 45.455 26.41 8.18 33.72 5.24
3241 3596 2.993899 AGCAATGTTAGTACTGACACGC 59.006 45.455 25.06 25.06 33.71 5.34
3242 3597 4.486090 AGAGCAATGTTAGTACTGACACG 58.514 43.478 21.42 16.28 31.79 4.49
3243 3598 7.091443 ACTTAGAGCAATGTTAGTACTGACAC 58.909 38.462 21.42 10.16 31.79 3.67
3244 3599 7.228314 ACTTAGAGCAATGTTAGTACTGACA 57.772 36.000 21.28 21.28 33.56 3.58
3245 3600 8.535690 AAACTTAGAGCAATGTTAGTACTGAC 57.464 34.615 10.73 10.73 0.00 3.51
3246 3601 9.555727 AAAAACTTAGAGCAATGTTAGTACTGA 57.444 29.630 5.39 0.00 0.00 3.41
3247 3602 9.599322 CAAAAACTTAGAGCAATGTTAGTACTG 57.401 33.333 5.39 0.00 0.00 2.74
3248 3603 8.290325 GCAAAAACTTAGAGCAATGTTAGTACT 58.710 33.333 0.00 0.00 0.00 2.73
3249 3604 8.073768 TGCAAAAACTTAGAGCAATGTTAGTAC 58.926 33.333 0.00 0.00 31.42 2.73
3250 3605 8.160521 TGCAAAAACTTAGAGCAATGTTAGTA 57.839 30.769 0.00 0.00 31.42 1.82
3251 3606 7.038154 TGCAAAAACTTAGAGCAATGTTAGT 57.962 32.000 0.00 0.00 31.42 2.24
3252 3607 7.928908 TTGCAAAAACTTAGAGCAATGTTAG 57.071 32.000 0.00 0.00 39.95 2.34
3253 3608 8.885494 ATTTGCAAAAACTTAGAGCAATGTTA 57.115 26.923 17.19 0.00 43.71 2.41
3254 3609 7.790823 ATTTGCAAAAACTTAGAGCAATGTT 57.209 28.000 17.19 0.00 43.71 2.71
3255 3610 7.599998 CCTATTTGCAAAAACTTAGAGCAATGT 59.400 33.333 17.19 0.00 43.71 2.71
3256 3611 7.599998 ACCTATTTGCAAAAACTTAGAGCAATG 59.400 33.333 17.19 2.53 43.71 2.82
3257 3612 7.670364 ACCTATTTGCAAAAACTTAGAGCAAT 58.330 30.769 17.19 0.00 43.71 3.56
3258 3613 7.014230 AGACCTATTTGCAAAAACTTAGAGCAA 59.986 33.333 17.19 0.00 42.74 3.91
3259 3614 6.490040 AGACCTATTTGCAAAAACTTAGAGCA 59.510 34.615 17.19 0.00 0.00 4.26
3260 3615 6.914259 AGACCTATTTGCAAAAACTTAGAGC 58.086 36.000 17.19 8.31 0.00 4.09
3264 3619 9.959749 CAGTTTAGACCTATTTGCAAAAACTTA 57.040 29.630 17.19 2.95 34.61 2.24
3265 3620 7.438160 GCAGTTTAGACCTATTTGCAAAAACTT 59.562 33.333 17.19 1.72 34.61 2.66
3266 3621 6.923508 GCAGTTTAGACCTATTTGCAAAAACT 59.076 34.615 17.19 14.81 36.61 2.66
3267 3622 6.129194 CGCAGTTTAGACCTATTTGCAAAAAC 60.129 38.462 17.19 12.79 0.00 2.43
3268 3623 5.918011 CGCAGTTTAGACCTATTTGCAAAAA 59.082 36.000 17.19 0.68 0.00 1.94
3269 3624 5.009210 ACGCAGTTTAGACCTATTTGCAAAA 59.991 36.000 17.19 5.01 37.78 2.44
3270 3625 4.517453 ACGCAGTTTAGACCTATTTGCAAA 59.483 37.500 15.44 15.44 37.78 3.68
3271 3626 4.069304 ACGCAGTTTAGACCTATTTGCAA 58.931 39.130 0.00 0.00 37.78 4.08
3272 3627 3.670625 ACGCAGTTTAGACCTATTTGCA 58.329 40.909 0.00 0.00 37.78 4.08
3273 3628 5.986004 ATACGCAGTTTAGACCTATTTGC 57.014 39.130 0.00 0.00 37.78 3.68
3274 3629 8.875803 TGTTTATACGCAGTTTAGACCTATTTG 58.124 33.333 0.00 0.00 37.78 2.32
3275 3630 9.609346 ATGTTTATACGCAGTTTAGACCTATTT 57.391 29.630 0.00 0.00 37.78 1.40
3276 3631 9.042008 CATGTTTATACGCAGTTTAGACCTATT 57.958 33.333 0.00 0.00 37.78 1.73
3277 3632 8.202137 ACATGTTTATACGCAGTTTAGACCTAT 58.798 33.333 0.00 0.00 37.78 2.57
3278 3633 7.549839 ACATGTTTATACGCAGTTTAGACCTA 58.450 34.615 0.00 0.00 37.78 3.08
3279 3634 6.403878 ACATGTTTATACGCAGTTTAGACCT 58.596 36.000 0.00 0.00 37.78 3.85
3280 3635 6.657836 ACATGTTTATACGCAGTTTAGACC 57.342 37.500 0.00 0.00 37.78 3.85
3281 3636 9.632969 CAATACATGTTTATACGCAGTTTAGAC 57.367 33.333 2.30 0.00 37.78 2.59
3282 3637 9.589111 TCAATACATGTTTATACGCAGTTTAGA 57.411 29.630 2.30 0.00 37.78 2.10
3283 3638 9.632969 GTCAATACATGTTTATACGCAGTTTAG 57.367 33.333 2.30 0.00 37.78 1.85
3284 3639 8.322428 CGTCAATACATGTTTATACGCAGTTTA 58.678 33.333 2.30 0.00 37.78 2.01
3285 3640 7.177407 CGTCAATACATGTTTATACGCAGTTT 58.823 34.615 2.30 0.00 37.78 2.66
3286 3641 6.237996 CCGTCAATACATGTTTATACGCAGTT 60.238 38.462 2.30 0.00 37.78 3.16
3288 3643 5.233476 ACCGTCAATACATGTTTATACGCAG 59.767 40.000 2.30 1.61 0.00 5.18
3289 3644 5.005875 CACCGTCAATACATGTTTATACGCA 59.994 40.000 2.30 0.00 0.00 5.24
3290 3645 5.005971 ACACCGTCAATACATGTTTATACGC 59.994 40.000 2.30 0.00 0.00 4.42
3291 3646 6.578020 ACACCGTCAATACATGTTTATACG 57.422 37.500 2.30 9.85 0.00 3.06
3292 3647 9.472361 AGATACACCGTCAATACATGTTTATAC 57.528 33.333 2.30 0.00 0.00 1.47
3293 3648 9.471084 CAGATACACCGTCAATACATGTTTATA 57.529 33.333 2.30 0.00 0.00 0.98
3294 3649 8.201464 TCAGATACACCGTCAATACATGTTTAT 58.799 33.333 2.30 0.00 0.00 1.40
3295 3650 7.490079 GTCAGATACACCGTCAATACATGTTTA 59.510 37.037 2.30 0.00 0.00 2.01
3296 3651 6.312918 GTCAGATACACCGTCAATACATGTTT 59.687 38.462 2.30 0.00 0.00 2.83
3297 3652 5.810587 GTCAGATACACCGTCAATACATGTT 59.189 40.000 2.30 0.00 0.00 2.71
3298 3653 5.127194 AGTCAGATACACCGTCAATACATGT 59.873 40.000 2.69 2.69 0.00 3.21
3299 3654 5.592054 AGTCAGATACACCGTCAATACATG 58.408 41.667 0.00 0.00 0.00 3.21
3300 3655 5.854010 AGTCAGATACACCGTCAATACAT 57.146 39.130 0.00 0.00 0.00 2.29
3301 3656 5.220989 GCTAGTCAGATACACCGTCAATACA 60.221 44.000 0.00 0.00 0.00 2.29
3302 3657 5.213675 GCTAGTCAGATACACCGTCAATAC 58.786 45.833 0.00 0.00 0.00 1.89
3303 3658 4.024302 CGCTAGTCAGATACACCGTCAATA 60.024 45.833 0.00 0.00 0.00 1.90
3304 3659 3.243101 CGCTAGTCAGATACACCGTCAAT 60.243 47.826 0.00 0.00 0.00 2.57
3305 3660 2.096980 CGCTAGTCAGATACACCGTCAA 59.903 50.000 0.00 0.00 0.00 3.18
3306 3661 1.669265 CGCTAGTCAGATACACCGTCA 59.331 52.381 0.00 0.00 0.00 4.35
3307 3662 1.002684 CCGCTAGTCAGATACACCGTC 60.003 57.143 0.00 0.00 0.00 4.79
3308 3663 1.022735 CCGCTAGTCAGATACACCGT 58.977 55.000 0.00 0.00 0.00 4.83
3309 3664 0.311165 CCCGCTAGTCAGATACACCG 59.689 60.000 0.00 0.00 0.00 4.94
3310 3665 0.674534 CCCCGCTAGTCAGATACACC 59.325 60.000 0.00 0.00 0.00 4.16
3311 3666 0.032267 GCCCCGCTAGTCAGATACAC 59.968 60.000 0.00 0.00 0.00 2.90
3312 3667 1.113517 GGCCCCGCTAGTCAGATACA 61.114 60.000 0.00 0.00 0.00 2.29
3313 3668 1.666580 GGCCCCGCTAGTCAGATAC 59.333 63.158 0.00 0.00 0.00 2.24
3314 3669 1.533273 GGGCCCCGCTAGTCAGATA 60.533 63.158 12.23 0.00 0.00 1.98
3315 3670 2.844839 GGGCCCCGCTAGTCAGAT 60.845 66.667 12.23 0.00 0.00 2.90
3359 3714 3.181474 CGTAAGGGGGTTTTCTGCAAAAA 60.181 43.478 0.00 0.00 33.17 1.94
3360 3715 2.362717 CGTAAGGGGGTTTTCTGCAAAA 59.637 45.455 0.00 0.00 0.00 2.44
3361 3716 1.957877 CGTAAGGGGGTTTTCTGCAAA 59.042 47.619 0.00 0.00 0.00 3.68
3362 3717 1.133730 ACGTAAGGGGGTTTTCTGCAA 60.134 47.619 0.00 0.00 46.39 4.08
3363 3718 0.475044 ACGTAAGGGGGTTTTCTGCA 59.525 50.000 0.00 0.00 46.39 4.41
3364 3719 1.268625 CAACGTAAGGGGGTTTTCTGC 59.731 52.381 0.00 0.00 46.39 4.26
3365 3720 2.578786 ACAACGTAAGGGGGTTTTCTG 58.421 47.619 0.00 0.00 46.39 3.02
3366 3721 3.743521 GTACAACGTAAGGGGGTTTTCT 58.256 45.455 0.00 0.00 46.39 2.52
3367 3722 2.480037 CGTACAACGTAAGGGGGTTTTC 59.520 50.000 0.00 0.00 46.39 2.29
3368 3723 2.493035 CGTACAACGTAAGGGGGTTTT 58.507 47.619 0.00 0.00 46.39 2.43
3369 3724 2.168326 CGTACAACGTAAGGGGGTTT 57.832 50.000 0.00 0.00 46.39 3.27
3370 3725 3.912899 CGTACAACGTAAGGGGGTT 57.087 52.632 0.00 0.00 46.39 4.11
3381 3736 7.009907 GTGGAGGTTCTTATGATTACGTACAAC 59.990 40.741 0.00 0.00 0.00 3.32
3382 3737 7.037438 GTGGAGGTTCTTATGATTACGTACAA 58.963 38.462 0.00 0.00 0.00 2.41
3383 3738 6.406177 GGTGGAGGTTCTTATGATTACGTACA 60.406 42.308 0.00 0.00 0.00 2.90
3384 3739 5.981915 GGTGGAGGTTCTTATGATTACGTAC 59.018 44.000 0.00 0.00 0.00 3.67
3385 3740 5.221106 CGGTGGAGGTTCTTATGATTACGTA 60.221 44.000 0.00 0.00 0.00 3.57
3386 3741 4.441079 CGGTGGAGGTTCTTATGATTACGT 60.441 45.833 0.00 0.00 0.00 3.57
3387 3742 4.049186 CGGTGGAGGTTCTTATGATTACG 58.951 47.826 0.00 0.00 0.00 3.18
3388 3743 3.808174 GCGGTGGAGGTTCTTATGATTAC 59.192 47.826 0.00 0.00 0.00 1.89
3389 3744 3.452990 TGCGGTGGAGGTTCTTATGATTA 59.547 43.478 0.00 0.00 0.00 1.75
3390 3745 2.238646 TGCGGTGGAGGTTCTTATGATT 59.761 45.455 0.00 0.00 0.00 2.57
3391 3746 1.837439 TGCGGTGGAGGTTCTTATGAT 59.163 47.619 0.00 0.00 0.00 2.45
3392 3747 1.066430 GTGCGGTGGAGGTTCTTATGA 60.066 52.381 0.00 0.00 0.00 2.15
3393 3748 1.369625 GTGCGGTGGAGGTTCTTATG 58.630 55.000 0.00 0.00 0.00 1.90
3394 3749 0.108329 CGTGCGGTGGAGGTTCTTAT 60.108 55.000 0.00 0.00 0.00 1.73
3395 3750 1.290955 CGTGCGGTGGAGGTTCTTA 59.709 57.895 0.00 0.00 0.00 2.10
3396 3751 2.030562 CGTGCGGTGGAGGTTCTT 59.969 61.111 0.00 0.00 0.00 2.52
3397 3752 4.681978 GCGTGCGGTGGAGGTTCT 62.682 66.667 0.00 0.00 0.00 3.01
3416 3771 2.815647 GACGAGGGCTTTGAGCGG 60.816 66.667 0.00 0.00 43.62 5.52
3417 3772 2.097038 CAGACGAGGGCTTTGAGCG 61.097 63.158 0.00 0.00 43.62 5.03
3418 3773 2.394563 GCAGACGAGGGCTTTGAGC 61.395 63.158 0.00 0.00 41.46 4.26
3419 3774 1.004560 TGCAGACGAGGGCTTTGAG 60.005 57.895 0.00 0.00 0.00 3.02
3420 3775 1.301716 GTGCAGACGAGGGCTTTGA 60.302 57.895 0.00 0.00 0.00 2.69
3421 3776 2.328099 GGTGCAGACGAGGGCTTTG 61.328 63.158 0.00 0.00 0.00 2.77
3422 3777 2.032681 GGTGCAGACGAGGGCTTT 59.967 61.111 0.00 0.00 0.00 3.51
3423 3778 4.379243 CGGTGCAGACGAGGGCTT 62.379 66.667 4.83 0.00 0.00 4.35
3429 3784 3.957435 ATCCCCTCGGTGCAGACGA 62.957 63.158 12.25 12.25 38.79 4.20
3430 3785 3.461773 ATCCCCTCGGTGCAGACG 61.462 66.667 4.45 4.45 0.00 4.18
3431 3786 2.187946 CATCCCCTCGGTGCAGAC 59.812 66.667 0.00 0.00 0.00 3.51
3432 3787 3.785859 GCATCCCCTCGGTGCAGA 61.786 66.667 0.00 0.00 36.65 4.26
3433 3788 4.864334 GGCATCCCCTCGGTGCAG 62.864 72.222 0.00 0.00 37.70 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.