>input_sequence_48910
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----------------------------AT-G----AACCAAAAATTCACGATGAGCGCAACCTATGAGCTAAGCATCAG
AAACGATGGCCACCTCATTGACATCGCTCCAAGTCCAACCACTGGCACGAATAACGCTCTCAATCAGA---GCGGCGGCG
AGATCCGCACGGAATGGCTGCGGGAGCTGACGTCGGCGTCACGGAGCGCCGCCGTCCTGAACGACCTCGTCGGCCGAACG
CCGGTGCTGTGGTACCTCGGCGAGCGCGCGGCCACCATCCTCCGGCCGCGCTCCCGGCGCGCCGACCTGAAGGCGCTACA
CGCG---------GTG---------GCCATAGGCCCGTACCACCGCGGCGACCGTGGCCTCGCCTTCGACGACGAGGCCA
AGCTGCCGTTCCTGCGGTACCTGCAGGACCGGTGCGGGCTCGACGTCGAGCAGTACGTCGCGGCGCTCGGGGCGGCGCGC
GGCCGCTTCCGCGAGGAGTTCGCCGACGACGCGGACGCGGTCGCCGCGGATTGGCTCCGGGACGAGGAGAAATTCGTGAA
GATGCTTCTCCTGGACAGCAGCTTCCTCCTCGTCTTCAGCCTCATGTTCGGCAAGACCGGCGGCTCGGAGGAACGGGCGG
CGGCGTCCGTGGTCACCAGGGAGCGATTCATACTGTACACGGCCGTGGCGCAGTACGCCGACGAGGTCAAGCTCGACCTG
CTCGTGCTGGAGAACCAGATCCCCTTTGCCGTCGTCAAGCTGCTCGCCGCCTCGTGCCGCAGCCTGAAGCTCCGCTCCGT
CGAGGAGCTGGTGGTCGGCTGCTTCGACGGCATCTGGCCGACCAGGGCGCGCGGCAAGGTCGAGTTGTTGCTCCGGCAGA
CGACGGACGCGAGATTCTATCACATCCTACACCTCTTCCACTGGTCGCGCGTCCCGGAGAACAAGTACCGCCTCCTCTCG
GTGCCGCTCAAGTTTCCCGAGGCCAAGGAATCGG------AGTCGGAGTGGATCATGCCTTGCGCCAGAGAGCTGCATCG
GGCGGCGGTGTGGTTCCGGAAGCCATGTCTGGACGGGGCGGAGAGGCACGGCGGCGACCTCAACATGGAGTTCCGGAGCG
CGGCGGCGAGCCCGATGGCGGTGATGACCATCCCCAGCTTCCACATCCTCGCCTACACCGCGGCGCTGCTCCATTCCATG
GTGGCCTTCGAGAAGCACTTCCACTGGGCGCACGGCGCCTGCGTGACGGTACACGTCAGGCGCATGGAGGGCCTCATACG
GTGCCCGCAGGACGCGGCGCTGCTTCGCCGCCGGTGGATCCTCGGCAGCGTCAAGTGCACCGACGAGGAGGTGGTGGATT
TCTTCCGTGACATGGTCGCGGAGGCGGCCGGGGTGCGCATGCCCGAAGAGTACGGCGGGATGATCAGCGCTGTGGCGCGG
CACAGGAGGAGGCGGGCGCGCAGATGGTGTGGGGACTTGATACTGCACTTCCTCCCGTCGCCCTGGGTGTCCGTCTCGCT
CGCCGCCGTTGTTGCGCTCATCATTGTGCCGGCCATGTTGCAGACAATCTACACCGTTTTGGGCTACAAAAAGTAG----
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr3D_1_TraesCS3D01G454300
GAAGGCGACTCGATGAGTCAATCTTCTTAG---TAAGATGCATGAATCAGTTCTACTACATTCTGTACTTGTTGCTAGTA
ACTTCAAATCTGCTTTTCCTTGAAAACAAACTTGTGTTAAACTCTGACAAGAACAACAAGAAACTACATGTTTTTCTTTT
CATGCAAAGCAAACAATTTCTCCGGGTTACAAGTTGGAACTTTACAC-------GTTACAAGTTGCCAGGAACTTGAAAG
GGGAATAAGAAATCACAGAGACAATAAGATGCA---------------GATGCTGTACTTGTTGCAAGTTACCAATAAAA
GGCTTAAGAAGATCCATTGCAAGACTGTACCCAGACTGAAAATAGA---------CAAAAAGGACTAGAGTAATA----G
AGGTCGTGGTGTAC--CATTTATCACACACGATTTTTGCTGCAAATAAAAATCTGTTGAGGTTCAGAAGGAGACCAA-AC
ATGCGAGCGGAGGTGAGCAGTGCAGAGATCACAGCCGCTAGGCGTATCTACGCAGGTGAGCTGATCTACGCGGCATCAGA
CATGCGTCAAGATGCGTGCGACGGTGAAGGGGCATTCGCTGGGGTTGGCCTCATAGGAAACGTCGGCCAGATAACATTTC
CATTACTAATAAGTTGCAAGTAACAAGCTTCAGCAAACAAATATTAATAGTTACAA------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GACAAAATGCCTACAAATATCCTAGTGTTGA
ACCGCCATCCAAACTGA---------------------------------------------------------------
-------------------------CAGTACTTAGCCTGTGCTATAGGACATGCATTGCTACAAAGCAATTTGGAGGGAT
TTCTT-----------TTTAACACAGC-----AATTTGGAGGTTAGTGCACATGATGAACATTTGGTTGAACCCGCTTGC
ATGGCTATGATATTAGTGGTGTCTGCTGTCGAGGACCACGTCCATGACCCGCCAAATTGACGGCCTGGTTCTGGCTGGTC
CAAGAATTTTCAGTGTGGATGCTGC--------ACGATGGCTTTTTCTGTGAAATTCTCCAAGTCAGGTTTACATACCA-
-TAATTATCCCCAGATGAATACGGAGTGAT-G----AACCAAAAATTCACGATGAGCGCAACCTATGAGCTAAGCATCAG
AAACGATGGCCACCTCATTGACATCGCTCCAAGTCCAACCACTGGCACGAATAACGCTCTCAATCAGA---GCGGCGGCG
AGATCCGCACGGAATGGCTGCGGGAGCTGACGTCGGCGTCACGGAGCGCCGCCGTCCTGAACGACCTCGTCGGCCGAACG
CCGGTGCTGTGGTACCTCGGCGAGCGCGCGGCCACCATCCTCCGGCCGCGCTCCCGGCGCGCCGACCTGAAGGCGCTACA
CGCG---------GTG---------GCCATAGGCCCGTACCACCGCGGCGACCGTGGCCTCGCCTTCGACGACGAGGCCA
AGCTGCCGTTCCTGCGGTACCTGCAGGACCGGTGCGGGCTCGACGTCGAGCAGTACGTCGCGGCGCTCGGGGCGGCGCGC
GGCCGCTTCCGCGAGGAGTTCGCCGACGACGCGGACGCGGTCGCCGCGGATTGGCTCCGGGACGAGGAGAAATTCGTGAA
GATGCTTCTCCTGGACAGCAGCTTCCTCCTCGTCTTCAGCCTCATGTTCGGCAAGACCGGCGGCTCGGAGGAACGGGCGG
CGGCGTCCGTGGTCACCAGGGAGCGATTCATACTGTACACGGCCGTGGCGCAGTACGCCGACGAGGTCAAGCTCGACCTG
CTCGTGCTGGAGAACCAGATCCCCTTTGCCGTCGTCAAGCTGCTCGCCGCCTCGTGCCGCAGCCTGAAGCTCCGCTCCGT
CGAGGAGCTGGTGGTCGGCTGCTTCGACGGCATCTGGCCGACCAGGGCGCGCGGCAAGGTCGAGTTGTTGCTCCGGCAGA
CGACGGACGCGAGATTCTATCACATCCTACACCTCTTCCACTGGTCGCGCGTCCCGGAGAACAAGTACCGCCTCCTCTCG
GTGCCGCTCAAGTTTCCCGAGGCCAAGGAATCGG------AGTCGGAGTGGATCATGCCTTGCGCCAGAGAGCTGCATCG
GGCGGCGGTGTGGTTCCGGAAGCCATGTCTGGACGGGGCGGAGAGGCACGGCGGCGACCTCAACATGGAGTTCCGGAGCG
CGGCGGCGAGCCCGATGGCGGTGATGACCATCCCCAGCTTCCACATCCTCGCCTACACCGCGGCGCTGCTCCATTCCATG
GTGGCCTTCGAGAAGCACTTCCACTGGGCGCACGGCGCCTGCGTGACGGTACACGTCAGGCGCATGGAGGGCCTCATACG
GTGCCCGCAGGACGCGGCGCTGCTTCGCCGCCGGTGGATCCTCGGCAGCGTCAAGTGCACCGACGAGGAGGTGGTGGATT
TCTTCCGTGACATGGTCGCGGAGGCGGCCGGGGTGCGCATGCCCGAAGAGTACGGCGGGATGATCAGCGCTGTGGCGCGG
CACAGGAGGAGGCGGGCGCGCAGATGGTGTGGGGACTTGATACTGCACTTCCTCCCGTCGCCCTGGGTGTCCGTCTCGCT
CGCCGCCGTTGTTGCGCTCATCATTGTGCCGGCCATGTTGCAGACAATCTACACCGTTTTGGGCTACAAAAAGTAGACGA
TTTCGAGAACCAACACAAAT--------GAGGATGATTGTTTGTTGTCCAAGTGTCCATGGTAACTTGGTCAATCTTGAA
ACTTGGCCCAGACACTGTGCCGTGGTATATGTGCGTGTGTGCTGTACTTGATGTTTCTCAAACAAAAAAGGAGGGTTAGT
GATCTTCAATGTAAAAGGAAAGTCTATGTCTCGAATTGCATCACTGTTTGTAACTCAATTGGACTGGT-----ATTTGTT
TTCCAGCAGCAACAAATAAGGCATTTCATGTTGTAACCAAACTCAACAGAATGATCCACATTGACACTTGGTTTAATCAT
CAGCCCAAAAGAGCATCAGTTACATGAGGGGGAAGTAAGTACGTATGCTTTTGCACACGCAGAACACTTTACAGCGCAGC
AGTACAGAAGAGGGAAGAAAACATGATGACTGGAATGATTTAGAAGAACCATTACTAAACAGAACGGCCAAGGTTAGAGT
AGTATTTACCATCATTAAAGAACTAGGGCAAACTTGTCTCACTGAAATTGGTACATCAGCTTCAGGACAGCTGATCATTG
CTTGGTACTTTGGTTGGCCATTAATCAATCACAGCCATATGAGATAAAAATAAT-ACACAGCAACTTGCTACTGGAGACA
GAAGAACGAGTTAATTGCACAGAAGTACCACAATGGGGCATCACATGCAGATTGGTACCACGATTGCTAATTTTTGCGTG
TCAGTACTAACATTGCTCTAAGTTTTTGCAAATAGGTCTAAACTGCGTATAAACATGTATTGACGGTGTATCTGACTAGC
GGGGCCCGCCCGTCAGGTGCCGACGTGGCATTTTTTTTGCAGAAAACCCCCTTACGTTGTACGTAATCATAAGAACCTCC
ACCGCACGCGCCGCTCAAAGCCCTCGTCTGCACCGAGGGGATGCCGCCGCCGGCGACGGCCCAGGGCACCCTAGGGGCGA
CGGCCGCGGTGCTGGCCGAGCTCCTGCACCCCGGGCGCGACCCAGACGAG
>chr3B_4
---GGCGACTCAATCAGTCCGTCTTCTTTCTAATAAGATGCATGAACCAGTTCTACTACATTCTGTACTTGTTGCTAGTA
ACTTCAAATCTGCTTTTCGTTGAAAACAAACCAGTGTTAAACTCTGACAGGAACAGCAAGAAACTACAGGTTTTTCTTTT
CATACAAAGCGAACAATTTCTCCGGGTTACAAGTTGGAACTTTGCAAGTTACAAGTTACAAGTTGCCAGGAACTTGAAAG
GGAAATAAGAAAACAC------------ATGCA---------------GATGATATACCTGCTGCAAGTTGCCAATAAAA
GGCAAA-----------------ACTATATCCAGAATGAAAATAGA---------CAAAAAGGACTAGAGTAATATATAG
AGGTCGTGGTGTGCGTCATTTAGCGCACACGATTTTTGCTGCGAATAAAAATGTGTTGAGGTTCAGAAGGAGACCAA-AC
ATGCCAGCACGGGTGAGCAGTGCAGAGATCACGGCCGCTAGCCATTTCTGCACAGGTGAGCTGATCTACGCGGCATCAGA
CGTGCGTCAAGATGCGTGCGGCGGTGAAGAGGCATTCGCTGGGGTTGGCCTCACAGGGAACGTCAGCCAGATAACATTTC
CGTTATTAATAAGTTGTAAGTAACAAGCTTCAGCAAAAAAATATTAATAGTTACTCCCTCCGTCCGAAAATACTTGTCAT
CAAAATGGACAAAAAAGGATGTATCTAAAACTAAAATACATCTAGATACATCCCCTTTTATTCGTTTTGATGACAAGTAT
TTTCGGGCGGAGGGAGTACAAGACAAAATGCCACAACCGATAAAAATAGGAGAAAATGCCTACAAATATCCTAGTGTTGA
ACCGTCATCTAAATTGGTACTCTCTCTGTCTGAAAAAGCTTGTCCGAAACTTGTTTCTTAAATGAATGATTCATATGAGG
AACAAACTTTTTTAAACGAAGGGAGCAGTACGTAGCCGGTGCTATAGGACATGCATTGCTACCAAGCAATTTGGAGGCTT
TATTTTGTTGTTGTTCTTGAACACAGCAATATAATTTGGAGGTTAGTGCACATGATGGACAGTTGGCTGAACCCGCTTGC
ATGCCTGTGATAGTAGTAGTGTCTGCTGTCGAGGACCACGTCCATGACCCGCCAAATTGACGGCCTGGTTCTGGTTGGCC
GAAGAATTTTCAGTGTGGATGCTGC--------ACGGCTG---TTTCTGTGAAATTCTCCAAGTCAGGTTTACATACCA-
-TAAT--TCTCCAGATGAACACGGAGCGAT-GACCCAACCAAAAATTCACAATGAGCGCAACCTCTGAGCTGAGCATCAG
AAACGATGGCCACCTCATTGACATCGCTCCAAGTCCAACCACTGGCATCAATCAGAGCG---------GCCGCGGAGGCG
AGATCCACACGGAATGGCTGCGGGAGCTGACCTCGGCGTCACGGAGCGCCGCCGTCCTGAACGACCTCGTCGGCCGAACG
CCGATGCTGTGGTACCTCGACGAGCGCGCGGCCACCATCCTCCGGCCGCGCTCCCGGCGCGCCGACCTGAAGGCGCTACA
CGCGGTGCGCGCGGTG---------GCCATCGGCCCGTACCACCGCGGCGACCGTGGCCTCGCCTTCGACGACGAGGCCA
AGCTGCCGTTCCTGCGGTACCTGCAGGACCAGTGCGGGCTCGACGTCGAGCAGTACGTCGCGGCGCTCGGGGCGGCGCGC
GGCTGCTTCCGCGACGAGTTCGCGGACGACGCGGACGCGGTCGCCGCGGATTGGCTCCGGGACGAGGAGAAGTTCGTGAA
GATGCTCCTCCTCGACAGCAGCTTCCTCCTCGTCTTCAGCCTCATGTTCGGCAAGGCCGGCGGTTGGGGGGAACGGGCGG
CGGCGCTCGTGGTCACCAGGGAGCGATTCGTACTGTACACGGCCGTGGCGCAGTACGCCGACGAGATCAAGCTCGATCTG
CTCGTGCTGGAGAACCAGATCCCCTTCGCCGTCGTCAAGCTGCTCGCCGCCTCTTGCCGCGGCCTGAAGCTCCGCTCCGT
CGAGGAGCTGATGCTCGGCTGCTTCGACTGCATCTGCCCGACCAGGGCGCGCGGCAAGGTCGACTTGTTGCTCCGGGAGA
CGACGGACGCGAAATTCTATCACATCCTACACCTCTTCCACTGGTCGCGCGTCCCGGAGAACAAGTACGGCGTCCTCTCG
GTGCCACTGAAGCTTCTCGAGGCCAAGGAGGAATCGGATCAGTCGGGGTGGATCATGCCTTGCGCCAGAGAGCTGCATCG
GGCGGCGGTGTGGTTCCGGAAGCCCTCTCTGGACGGGGCGGAGAGGCACGGCGGGGACCTCAACATGGAGTTCCGGAGCG
CGGCGGCGAGCCCGATGGCGGTGATGACCATCCCCAGCTTCCACATCCTCGCCTACACCGCGGCGCTGCTCCATTCCATG
CTGGCCTTCGAGAAGCACTTCCACTGGGCGCACGGCGCCTGCGTGACGGTGCACGTCAAGCGCATGGAGGGCCTGATACG
GTGCCCGCAGGACGCGGCGCTGCTTCGCCGCCGGTGGATCCTCGGCAGCGTAAAGTGCACGGACGAGGAGGTGGTGGATT
TCTTCCGTGACATGGTCTTGGAGGCGGCTGGGGTGCCCATGCCCGAAGAGTACGGCGAGATGATCCGCGCGGTGGCGCGG
CACAGGAGGAGGCGGGCGCGCAGATGGTGTGGGGACTTGATACTGCACTTCCTCCCGTCTCCCTGGGTATCCGTCTCGCT
CGCCGCCGTGGTTGCGCTCATCATTGTGCCGGCCATGTTGCAGACAATCTACACCATTTTGGGCTACCAAAAGTAGACGA
TTTCGAGAACCAG--------CATATAGGAGGATGATTGCTTG-------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr3A_4
---GGCGACTCGATCAGTCCATCTTCTTTTTAATAAGATGCATGAATCAGTTCTACTGCATTCTGCACTTGTTGCTAGTA
A-----------CTTTTCCTTGAAAACAAACCAGTGTTAAACTCTGACAAGAACAACAAGAAACTAAAGGTTTTTCTTTT
CATGCAAAGCAAACAATTTCTCCGGGTTACAAGTTG-----------------------------CCAGGAACTTGAAAG
GGGAATAAGGGAACAC------------AGAGACAATCACATGCAGATGATGATGTACTTGTTGCAAGTTGCCAACAAAA
GGCTTA-----------------ACAAGATCCATTGCCAGACTGTAGGAAGTATCCAAAAACGACTAGAGTAATA----G
AGGTCATGGTGTAC--CATTTATCAGACACGATTTTTGCTGCGAGTAAAAATCTCTTGAGGTTCAGAAGGAGACCAACAC
ATGCCAGCACAGGTGAGCAGTGCAGAGATCACAGCTGCTAGCCGTATCTGCACAGGTGAGCTGATCTATGCGGCATCAGA
CGTGCGTCAAGATGCGTGCGACGGTGAAGGGGCATTCGCTGGGGTTGGCCTCACAGGGAACGTCAGCCAGATAACATTTT
CGTTATTAGTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------TGTGTTATAGGACATGCATTGCTACAAAGCAATTTGGAGGGTT
TTTCT-----------TTTAACACAGC-----AATTTGGAGGTTAGTGCACATGATGGACAGT-----------------
-----------------GGTGTCTCCTGTCGAGGACCACGTCCATGACCCGCCAAATTGACGGCCTGGTTCTGGTTGGTC
CAAGACTTTTCAGTGTGGTCTGGATGCTGCACGACGGCTG---CTTCTGTGAAATTCTCCAAGTCAGGTTTACATACCAC
ATAAT--TCTCCAGATGAACACGGAGCGATAGACCCAACCAAAAATTCACAATGAGCGCAACCTCTGAGCTGAGCATCAG
AAACGATGGCCACCTCATTGACATCGCTCCAAGTCCAACCACCGGCATCAATCAGAGCG---------GCGGCGGAGGCG
AGATCCACACGGAATGGCTGCGGGAGCTGACGTCGGCGTCACGGAGCGCCGCCGTCCTGAACGACCTCATCGGCCGAACG
CCGACGCTGTGGTACCTCGGCGAGCGCGCGCCCACCATCCTCCGGCCGCGCTCCCGGCGCGCCGACCTGAAGGCGCTACA
CGCG---------GTGCGCGCGGTGGCCATCGGCCCGTACCACCGCGGCGACCGTGGCCTCGCCTTCGACGACGAGGCCA
AGCTGCCGTTCCTGCGGTACCTGCAGGACCAGTGCGGGCTCGACGTCGAGCAGTACGTCGCGGCGCTCGGGG--------
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------------------------------------------------------------------------TGGCGCGG
CACAGGACGAGGCGGGCGCGCAGATGGTGTGGGGACTTGATACTTCACTTCCTCCCGTCGCCCTGGGTGTCCGTCTCGCT
CGCCGCCGTGGTTGCGCTCATCATTGTGCCGGCGATGTTGCAGACAATCTACGCCATTTTGGGCTACCAAAAGTAGACGA
TTTCGAGAACCAACAGTCCAACATATAGGAGGATGATTGTTTGTTGTCCAAGTGTCCATGGTAACTTGGTCAATCTTGAA
ACTTCGCCCACACACTGTGCCGTGGTATATGTGCGTGTGTGCTGTACTTGATGTTTCTCAAACAAAAAAGGAGGGTTAGT
GATCTTCAATGTAAAAGGAAAGTCTATGTCTCGAATTGCATCACTGTTTGTAACTCAATTGGACTGGTATTACATTTGTT
TTCCAGCAGCAACAA-TAAGGCATTTCATGCTGTAACCAAACTCAGCAGAATGATCCACATTGACACTTGGTTTAATCAT
CAGCCCAAAAGAGCATCAGTTACATGAGGGGGAAGTAAGTATGTATGCTTTTGCACACGCAGAACACTTTACAGCGCAGC
AGTACAGAAGAGGGAAGAAAACATGACGACTGGAATGATTTAGAAGAGCCATAACTAAACAGAACGGCCAAGGTTAGTGT
AGTATTTACCATCATTAAAGAACTAGGGCAAACTTGTCTCACTGAAATTGGTAGTTCAGCTTCAGGACAGCTGATCATTG
CTTGGTACTTTGGTTGGAAATTAATCAATCACAGCCATATGAGATAAAAATAAAAACACAGCAACTTGCTACTGGAGACA
GAAGAAC-------------------------------------------------------------------------
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--------------------------------------------------
>chr3A_1063
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---------------CATTGACATTGCTCTTAGTCCAACCACCGGCAGGAATATTGCTGTAAATCAGAGCGGCGGCGGCG
AGATCCACACGGGGTGGCTGCGCGAGCTCACATCGGCGTCACGTAGCTCGGCCGTCCTGAACGAGCTCATCGGCCGTACG
CCGATGCTGTGGTTCCTCGGCGAGCGCGCGGCCACCATCCTCCGGCCGCGCACCCGGCGCGCCAACGTGAAGGCGCTACA
CACG---------GTGCGCGCTGTGGCCATTGGCCCGTACCACCGCGGCGACCGAGGCCTCGCCTTTGACGACGAGGCCA
AGCTGCCGTTCCTGCGGTGCCTGCAGGACCGGTGCGGGCTAGACGTCGAGCAGTACGTCGCGGCGCTCGGGGCGGCGCGC
GGCAGCTTTCGCGACGAGTTCGCCGACGACGCGGATTCGGTCGCCGCGGATTGGCTCCTGGACGAGGAGAAGTTCGTGAA
GATGCTCCTCCTCGACAGCAGCTTCGTCCTCGTCTTCAGCATCATGTTCAGCAAGGCCGGCAGCGGGGAGGAACGGGCGG
CGGTGCCCGTT---ACCAGGGAGCACTTCATACTGTACACGGCCGTGTCGCAGTACGCCGACGAGATCATGCTCGACCTG
CTCGTGCTGGAAAATCAGATCCCCTTCGCCGTCGTCAAGCTGCTCGCAGCCTCGTGCTGCGTTCTGAAGCTACGCTCAGT
CGAGGAGCTGGTGCTTGGCTGCTTCGACGGCATCTGTCCGAGGAGGGCGCGCGGGAAGGTCATCGACTTGCCGCTCCAGC
AA----------------------------ACCTCTTCCACTGGTCGCGCGTGCCGGAGAACAAGTACCGCGTCCTCTCC
ACGCCATTAAAGCTTCTCGAGGCCAAGGA---GG------AGTCGGAGTGGCTCATCCCTTGCGCCAGGGAGCTGCAGCT
GTCGGCAGTGTGGTTCAGGAAGGCCAAGCTGGACGCGAGGGAGAGGCACGGCGGCGACCTCGACATGCAGTTCTGGAGCA
CGGCGGCGAGCCCGGTGGCGGTGATGACCATCCCGAGCTTCCACATCCTCGCCTACACCGCGGCGTTGCTCCACAACATG
GTGGCTTTCGAGAAGCACTTCCAACGGGCGCACGGCGTCTGCGTGACGGCGCACGTGGCGCGCATGGAGGGCCTCATACG
GTGCCCGCAGGACGCGGCGCTGCTTCGCCGCCGGTGGGCACTCGGTAGCGTAAAGTACACCGACGAGGAGGTGGTGGATT
TCTTCCGTGGCATCGTCGCGGAGGCGGCCGGGGTGCGCATGCCTCAAGAGTACGGCGAGATGCTCAGCGCGGTGGCGCGG
CACAGGAGGAGGCGGTCAAGCAGGTGGTACGGAGACTTCATACTGCACTTCTTCCCTTCTCCATGGGTGGCCGTCTCGCT
CGCCGTAGTGGCTGCGCTGATCATTGTGCCGGCGATGCTGCAGACGGCCTACGCCATTCTGAGTTACCAAAAGTAGATGA
T-------------------------------------------------------------------------------
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>SNPs
SSS-----------S----S--------SS--------------------------------------------------
-------------------------------SS-----------------------------------S-----------
-------------------------------------------S--S---------------------------------
------------S---SSSSSSSSSSSS------------------------S-----------------S---------
------SSSSSSSSSSSSSSSSS---S--S-----S--------------------------------------------
------------------------------------------S-------------------------------------
----S---SS-------------------------------S-------S-S----------------------------
-S---------------------------------------------------S---S------S---------------
-S---S----------S--------------------S----------------SS------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
----S----S---S--S---------------------------------------------------------------
-------------------------------S----------------------------------------------S-
--S------------------------------------------------------S---S----S-------------
---S--S-----S-------------------------------------------------------------S-----
------------------------------------SSS-SSS-------------------------------------
-----SS--S---------S------S-----------------------S-------------S------S--------
-----------------------------------------------S------S---S-S-------------------
------S-------------------------------------------------------------------------
---S----------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
---S----------S--------------------------------------------------------S--------
------S-----S------------------------------------------S---------S--------------
-----S-----------------------------------------------------------S--------------
--------------------------S---------------------------------S-------------------
-------------S----------------------S--------------------------S----------------
------------S----------------------------------------------------------S--------
-----S--S---S---S------------SSS------------------------------------------------
------------------------S-S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-------S---------------------
---------------------------------------------------S----------------------------
---------------------------------------------------------S------------S---------
--------------------------------------------------------------------------------
---------S---------------------------------------------S-----------S------------
---------------SSSSS------------------------------------------------------------
----S-----S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--------------S--------------S----------------------------------
-----------------------------------------S--------------------------------------
--------------------------S--------------------S----S------------------------S--
-----------------------------------------------------SS-------------------------
-----------------SS----------------------------------S--------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_562
--------------------------------------------------------------------------------
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--------------------------------------------------------------GATCTACGCGGCATCAGA
CA------------------------------------------------------------------------------
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>reverse_2272
--------------------------------------------------------------------------------
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-------------------------------CGGAGTCGGAGTGGATCATG-----------------------------
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--------------------------------------------------
>forward_897
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-----------------------------------------------------------------------------TGA
ACCGCCATCCAAACTGA---------------------------------------------------------------
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>reverse_2810
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---------TGTTGCGCTCATCATTGTGC---------------------------------------------------
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--------------------------------------------------
>forward_2272
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------------TTTCCCGAGGCCAAGGAATC------------------------------------------------
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>reverse_3666
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-----------------------------------------------------------------GTGTATCTGACTAGC
GGGGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
