Multiple sequence alignment - TraesCS3D01G454200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G454200 chr3D 100.000 3996 0 0 1 3996 560944505 560940510 0.000000e+00 7380.0
1 TraesCS3D01G454200 chr3D 84.983 293 34 7 3703 3991 445035418 445035704 5.050000e-74 289.0
2 TraesCS3D01G454200 chr3A 89.246 1432 89 29 815 2215 697014527 697013130 0.000000e+00 1731.0
3 TraesCS3D01G454200 chr3A 88.740 1119 99 16 2380 3487 697013135 697012033 0.000000e+00 1343.0
4 TraesCS3D01G454200 chr3A 84.232 742 41 30 75 765 697015330 697014614 0.000000e+00 652.0
5 TraesCS3D01G454200 chr3A 89.510 143 10 3 2232 2374 92270598 92270735 4.100000e-40 176.0
6 TraesCS3D01G454200 chr3A 94.366 71 4 0 3562 3632 697011695 697011625 4.220000e-20 110.0
7 TraesCS3D01G454200 chr3B 85.844 1102 111 21 2380 3466 745610189 745609118 0.000000e+00 1129.0
8 TraesCS3D01G454200 chr3B 89.305 748 28 19 75 798 745612434 745611715 0.000000e+00 891.0
9 TraesCS3D01G454200 chr3B 88.268 716 54 19 806 1499 745611678 745610971 0.000000e+00 830.0
10 TraesCS3D01G454200 chr3B 90.569 615 40 9 1606 2215 745610785 745610184 0.000000e+00 798.0
11 TraesCS3D01G454200 chr3B 84.713 157 16 5 3496 3646 745609117 745608963 2.490000e-32 150.0
12 TraesCS3D01G454200 chrUn 87.327 434 25 11 1071 1496 362209026 362208615 1.680000e-128 470.0
13 TraesCS3D01G454200 chrUn 98.319 119 2 0 1603 1721 362208433 362208315 4.050000e-50 209.0
14 TraesCS3D01G454200 chrUn 87.195 164 16 3 661 822 362209286 362209126 8.820000e-42 182.0
15 TraesCS3D01G454200 chrUn 90.152 132 10 1 661 792 303188113 303187985 6.870000e-38 169.0
16 TraesCS3D01G454200 chrUn 87.500 88 9 2 800 885 362209125 362209038 2.540000e-17 100.0
17 TraesCS3D01G454200 chrUn 100.000 28 0 0 1 28 229640460 229640433 7.000000e-03 52.8
18 TraesCS3D01G454200 chrUn 100.000 28 0 0 1 28 265514622 265514595 7.000000e-03 52.8
19 TraesCS3D01G454200 chrUn 100.000 28 0 0 1 28 343847722 343847749 7.000000e-03 52.8
20 TraesCS3D01G454200 chrUn 100.000 28 0 0 1 28 368731625 368731598 7.000000e-03 52.8
21 TraesCS3D01G454200 chrUn 100.000 28 0 0 1 28 447036424 447036397 7.000000e-03 52.8
22 TraesCS3D01G454200 chr1B 87.327 434 25 11 1071 1496 59503186 59503597 1.680000e-128 470.0
23 TraesCS3D01G454200 chr1B 87.327 434 25 11 1071 1496 59522878 59523289 1.680000e-128 470.0
24 TraesCS3D01G454200 chr1B 98.319 119 2 0 1603 1721 59503779 59503897 4.050000e-50 209.0
25 TraesCS3D01G454200 chr1B 98.319 119 2 0 1603 1721 59523471 59523589 4.050000e-50 209.0
26 TraesCS3D01G454200 chr1B 87.805 164 15 3 661 822 59502926 59503086 1.900000e-43 187.0
27 TraesCS3D01G454200 chr1B 87.195 164 16 3 661 822 59522618 59522778 8.820000e-42 182.0
28 TraesCS3D01G454200 chr1B 91.176 68 5 1 819 885 59503107 59503174 1.530000e-14 91.6
29 TraesCS3D01G454200 chr1B 91.176 68 5 1 819 885 59522799 59522866 1.530000e-14 91.6
30 TraesCS3D01G454200 chr1B 100.000 35 0 0 4 38 677770519 677770485 9.270000e-07 65.8
31 TraesCS3D01G454200 chr1B 100.000 28 0 0 1 28 677775742 677775715 7.000000e-03 52.8
32 TraesCS3D01G454200 chr2B 90.000 290 27 2 3703 3991 181756045 181755757 1.360000e-99 374.0
33 TraesCS3D01G454200 chr5B 89.324 281 30 0 3703 3983 528574281 528574561 1.770000e-93 353.0
34 TraesCS3D01G454200 chr5B 85.526 304 38 4 3694 3996 523569514 523569812 3.000000e-81 313.0
35 TraesCS3D01G454200 chr5B 86.909 275 33 3 3715 3988 508266542 508266814 5.020000e-79 305.0
36 TraesCS3D01G454200 chr5B 81.633 147 17 4 2232 2375 474058748 474058887 3.260000e-21 113.0
37 TraesCS3D01G454200 chr6B 87.900 281 31 2 3703 3983 228695396 228695673 1.070000e-85 327.0
38 TraesCS3D01G454200 chr4A 86.897 290 37 1 3703 3991 606409831 606410120 1.390000e-84 324.0
39 TraesCS3D01G454200 chr4A 84.783 138 16 4 2233 2370 150876652 150876784 2.510000e-27 134.0
40 TraesCS3D01G454200 chr2A 86.879 282 33 3 3703 3983 729288776 729289054 3.000000e-81 313.0
41 TraesCS3D01G454200 chr2A 91.549 142 9 3 2232 2372 4904845 4904706 4.080000e-45 193.0
42 TraesCS3D01G454200 chr7B 85.666 293 35 5 3702 3991 562382462 562382174 6.490000e-78 302.0
43 TraesCS3D01G454200 chr7B 87.075 147 14 3 2232 2377 587901343 587901485 1.150000e-35 161.0
44 TraesCS3D01G454200 chr7B 87.324 142 14 3 2232 2373 480277645 480277782 4.130000e-35 159.0
45 TraesCS3D01G454200 chr2D 90.141 142 10 3 2232 2373 166582106 166582243 8.820000e-42 182.0
46 TraesCS3D01G454200 chr7A 88.732 142 12 3 2232 2373 401747287 401747150 1.910000e-38 171.0
47 TraesCS3D01G454200 chr1A 88.028 142 12 3 2232 2373 71725770 71725634 3.200000e-36 163.0
48 TraesCS3D01G454200 chr1A 85.443 158 17 3 2216 2373 59214247 59214096 4.130000e-35 159.0
49 TraesCS3D01G454200 chr1A 100.000 38 0 0 1 38 550899861 550899898 1.990000e-08 71.3
50 TraesCS3D01G454200 chr6D 100.000 38 0 0 1 38 404216687 404216724 1.990000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G454200 chr3D 560940510 560944505 3995 True 7380.00 7380 100.00000 1 3996 1 chr3D.!!$R1 3995
1 TraesCS3D01G454200 chr3A 697011625 697015330 3705 True 959.00 1731 89.14600 75 3632 4 chr3A.!!$R1 3557
2 TraesCS3D01G454200 chr3B 745608963 745612434 3471 True 759.60 1129 87.73980 75 3646 5 chr3B.!!$R1 3571
3 TraesCS3D01G454200 chrUn 362208315 362209286 971 True 240.25 470 90.08525 661 1721 4 chrUn.!!$R6 1060
4 TraesCS3D01G454200 chr1B 59502926 59503897 971 False 239.40 470 91.15675 661 1721 4 chr1B.!!$F1 1060
5 TraesCS3D01G454200 chr1B 59522618 59523589 971 False 238.15 470 91.00425 661 1721 4 chr1B.!!$F2 1060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 886 0.669625 AGCTTCCGTACGTTCCTTGC 60.670 55.0 15.21 9.28 0.0 4.01 F
1958 2217 0.034198 TTGTTTCTGATGGCGTCCGA 59.966 50.0 3.88 0.00 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2484 0.103208 GCGTCCTAGACAGACCCATG 59.897 60.0 0.0 0.0 32.09 3.66 R
3688 4280 0.037590 GGAGTACCATGTTGCCACCA 59.962 55.0 0.0 0.0 35.97 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 8.885494 TGTAAAAACCCTTGAAATTCATCTTG 57.115 30.769 0.00 0.00 0.00 3.02
61 62 8.700051 TGTAAAAACCCTTGAAATTCATCTTGA 58.300 29.630 0.00 0.00 0.00 3.02
62 63 8.978539 GTAAAAACCCTTGAAATTCATCTTGAC 58.021 33.333 0.00 0.00 0.00 3.18
63 64 5.728637 AACCCTTGAAATTCATCTTGACC 57.271 39.130 0.00 0.00 0.00 4.02
64 65 5.003096 ACCCTTGAAATTCATCTTGACCT 57.997 39.130 0.00 0.00 0.00 3.85
65 66 5.012893 ACCCTTGAAATTCATCTTGACCTC 58.987 41.667 0.00 0.00 0.00 3.85
66 67 5.012239 CCCTTGAAATTCATCTTGACCTCA 58.988 41.667 0.00 0.00 0.00 3.86
67 68 5.655532 CCCTTGAAATTCATCTTGACCTCAT 59.344 40.000 0.00 0.00 0.00 2.90
68 69 6.154021 CCCTTGAAATTCATCTTGACCTCATT 59.846 38.462 0.00 0.00 0.00 2.57
69 70 7.310237 CCCTTGAAATTCATCTTGACCTCATTT 60.310 37.037 0.00 0.00 0.00 2.32
70 71 7.544566 CCTTGAAATTCATCTTGACCTCATTTG 59.455 37.037 0.00 0.00 0.00 2.32
71 72 6.927416 TGAAATTCATCTTGACCTCATTTGG 58.073 36.000 0.00 0.00 0.00 3.28
72 73 5.927281 AATTCATCTTGACCTCATTTGGG 57.073 39.130 0.00 0.00 0.00 4.12
73 74 2.726821 TCATCTTGACCTCATTTGGGC 58.273 47.619 0.00 0.00 35.14 5.36
175 181 2.433838 CTGGCTGTCACGAGGCTG 60.434 66.667 0.00 0.00 39.27 4.85
195 201 4.381932 GCTGCCCAATTTGCACTAGTTTAT 60.382 41.667 0.00 0.00 34.46 1.40
196 202 5.163561 GCTGCCCAATTTGCACTAGTTTATA 60.164 40.000 0.00 0.00 34.46 0.98
197 203 6.202516 TGCCCAATTTGCACTAGTTTATAC 57.797 37.500 0.00 0.00 32.85 1.47
227 237 7.989739 AGAAGTATCTGGAAGCAGGTAGCAAA 61.990 42.308 0.00 0.00 39.34 3.68
318 328 6.128715 CCAAGTGCACGATATAATCATGAGAC 60.129 42.308 12.01 0.00 0.00 3.36
411 428 2.594592 GCCCCACGTTGACAGCTT 60.595 61.111 0.00 0.00 0.00 3.74
433 451 1.003233 GAAGGTCAGGACAGGCACC 60.003 63.158 1.41 0.00 0.00 5.01
435 453 4.394712 GGTCAGGACAGGCACCGG 62.395 72.222 0.00 0.00 0.00 5.28
436 454 4.394712 GTCAGGACAGGCACCGGG 62.395 72.222 6.32 0.00 0.00 5.73
499 517 4.508128 GAATCGCTCGCCCGGTGA 62.508 66.667 0.00 0.00 0.00 4.02
500 518 4.077184 AATCGCTCGCCCGGTGAA 62.077 61.111 0.00 0.00 0.00 3.18
503 521 4.735132 CGCTCGCCCGGTGAAGAA 62.735 66.667 0.00 0.00 0.00 2.52
629 672 4.619760 CCATGTGCATTCATTTCATATCGC 59.380 41.667 0.00 0.00 0.00 4.58
657 716 0.676151 GTCTTCTTGGCCTGGCTCTG 60.676 60.000 19.68 8.68 0.00 3.35
675 734 1.520342 GGCCTAGCTGCTCTGTTCG 60.520 63.158 4.91 0.00 0.00 3.95
787 881 1.069378 CGTCCAGCTTCCGTACGTTC 61.069 60.000 15.21 0.00 0.00 3.95
792 886 0.669625 AGCTTCCGTACGTTCCTTGC 60.670 55.000 15.21 9.28 0.00 4.01
1158 1289 0.106619 CTCCTCCCACGCTAGGTACT 60.107 60.000 0.00 0.00 46.37 2.73
1159 1290 0.333993 TCCTCCCACGCTAGGTACTT 59.666 55.000 0.00 0.00 41.75 2.24
1160 1291 1.565759 TCCTCCCACGCTAGGTACTTA 59.434 52.381 0.00 0.00 41.75 2.24
1161 1292 1.680207 CCTCCCACGCTAGGTACTTAC 59.320 57.143 0.00 0.00 41.75 2.34
1162 1293 2.652590 CTCCCACGCTAGGTACTTACT 58.347 52.381 0.00 0.00 41.75 2.24
1163 1294 3.434167 CCTCCCACGCTAGGTACTTACTA 60.434 52.174 0.00 0.00 41.75 1.82
1164 1295 3.545703 TCCCACGCTAGGTACTTACTAC 58.454 50.000 0.00 0.00 41.75 2.73
1182 1313 7.232127 ACTTACTACTACCTGACACTAGCAAAA 59.768 37.037 0.00 0.00 0.00 2.44
1183 1314 6.415206 ACTACTACCTGACACTAGCAAAAA 57.585 37.500 0.00 0.00 0.00 1.94
1184 1315 7.005709 ACTACTACCTGACACTAGCAAAAAT 57.994 36.000 0.00 0.00 0.00 1.82
1186 1319 8.591072 ACTACTACCTGACACTAGCAAAAATTA 58.409 33.333 0.00 0.00 0.00 1.40
1193 1326 5.945784 TGACACTAGCAAAAATTATCCTGCT 59.054 36.000 0.65 0.65 46.50 4.24
1196 1329 3.155093 AGCAAAAATTATCCTGCTGCG 57.845 42.857 0.00 0.00 43.34 5.18
1201 1334 5.501252 GCAAAAATTATCCTGCTGCGATTTG 60.501 40.000 0.00 0.00 0.00 2.32
1202 1335 4.989279 AAATTATCCTGCTGCGATTTGT 57.011 36.364 0.00 0.00 0.00 2.83
1205 1338 2.119801 ATCCTGCTGCGATTTGTTCT 57.880 45.000 0.00 0.00 0.00 3.01
1206 1339 1.896220 TCCTGCTGCGATTTGTTCTT 58.104 45.000 0.00 0.00 0.00 2.52
1207 1340 2.229792 TCCTGCTGCGATTTGTTCTTT 58.770 42.857 0.00 0.00 0.00 2.52
1209 1342 3.068024 TCCTGCTGCGATTTGTTCTTTTT 59.932 39.130 0.00 0.00 0.00 1.94
1210 1343 3.182972 CCTGCTGCGATTTGTTCTTTTTG 59.817 43.478 0.00 0.00 0.00 2.44
1211 1344 3.779759 TGCTGCGATTTGTTCTTTTTGT 58.220 36.364 0.00 0.00 0.00 2.83
1212 1345 4.926244 TGCTGCGATTTGTTCTTTTTGTA 58.074 34.783 0.00 0.00 0.00 2.41
1213 1346 5.344066 TGCTGCGATTTGTTCTTTTTGTAA 58.656 33.333 0.00 0.00 0.00 2.41
1218 1351 6.070829 GCGATTTGTTCTTTTTGTAATTGCC 58.929 36.000 0.00 0.00 0.00 4.52
1219 1352 6.288419 CGATTTGTTCTTTTTGTAATTGCCG 58.712 36.000 0.00 0.00 0.00 5.69
1220 1353 6.074569 CGATTTGTTCTTTTTGTAATTGCCGT 60.075 34.615 0.00 0.00 0.00 5.68
1221 1354 5.957910 TTGTTCTTTTTGTAATTGCCGTG 57.042 34.783 0.00 0.00 0.00 4.94
1222 1355 3.799420 TGTTCTTTTTGTAATTGCCGTGC 59.201 39.130 0.00 0.00 0.00 5.34
1223 1356 2.656085 TCTTTTTGTAATTGCCGTGCG 58.344 42.857 0.00 0.00 0.00 5.34
1226 1359 0.945099 TTTGTAATTGCCGTGCGTGA 59.055 45.000 0.00 0.00 0.00 4.35
1227 1360 1.160989 TTGTAATTGCCGTGCGTGAT 58.839 45.000 0.00 0.00 0.00 3.06
1228 1361 0.724549 TGTAATTGCCGTGCGTGATC 59.275 50.000 0.00 0.00 0.00 2.92
1229 1362 0.315059 GTAATTGCCGTGCGTGATCG 60.315 55.000 0.00 0.00 40.37 3.69
1232 1365 3.850095 TTGCCGTGCGTGATCGTGA 62.850 57.895 0.00 0.00 39.49 4.35
1503 1665 4.081198 CCCATCTGAAACTCTGCTACTTCT 60.081 45.833 0.00 0.00 0.00 2.85
1518 1717 5.006358 TGCTACTTCTTGAACGTTTCTGAAC 59.994 40.000 0.46 0.00 0.00 3.18
1585 1796 2.092211 CGCGAGAGTTGGTGAAATGTAC 59.908 50.000 0.00 0.00 0.00 2.90
1601 1825 5.339008 AATGTACTGACTGAATTCGCCTA 57.661 39.130 0.04 0.00 0.00 3.93
1744 1999 3.370061 GCGGCCATCTATACGGTAATTTC 59.630 47.826 2.24 0.00 0.00 2.17
1769 2025 0.445436 GCACAGCTCCATTCTTGTCG 59.555 55.000 0.00 0.00 0.00 4.35
1770 2026 0.445436 CACAGCTCCATTCTTGTCGC 59.555 55.000 0.00 0.00 0.00 5.19
1854 2110 0.798776 CGGCAAAGAGTCCATGACAC 59.201 55.000 0.00 0.00 34.60 3.67
1935 2194 5.648092 AGGGAACTTATTACACAATGCACTC 59.352 40.000 0.00 0.00 37.44 3.51
1946 2205 2.954318 ACAATGCACTCTGCTTGTTTCT 59.046 40.909 0.00 0.00 45.31 2.52
1947 2206 3.243301 ACAATGCACTCTGCTTGTTTCTG 60.243 43.478 0.00 0.00 45.31 3.02
1948 2207 2.330440 TGCACTCTGCTTGTTTCTGA 57.670 45.000 0.00 0.00 45.31 3.27
1949 2208 2.854963 TGCACTCTGCTTGTTTCTGAT 58.145 42.857 0.00 0.00 45.31 2.90
1950 2209 2.551032 TGCACTCTGCTTGTTTCTGATG 59.449 45.455 0.00 0.00 45.31 3.07
1951 2210 2.095364 GCACTCTGCTTGTTTCTGATGG 60.095 50.000 0.00 0.00 40.96 3.51
1952 2211 2.095364 CACTCTGCTTGTTTCTGATGGC 60.095 50.000 0.00 0.00 0.00 4.40
1953 2212 1.129998 CTCTGCTTGTTTCTGATGGCG 59.870 52.381 0.00 0.00 0.00 5.69
1954 2213 0.877071 CTGCTTGTTTCTGATGGCGT 59.123 50.000 0.00 0.00 0.00 5.68
1955 2214 0.874390 TGCTTGTTTCTGATGGCGTC 59.126 50.000 0.00 0.00 0.00 5.19
1956 2215 0.169009 GCTTGTTTCTGATGGCGTCC 59.831 55.000 3.88 0.00 0.00 4.79
1957 2216 0.443869 CTTGTTTCTGATGGCGTCCG 59.556 55.000 3.88 0.00 0.00 4.79
1958 2217 0.034198 TTGTTTCTGATGGCGTCCGA 59.966 50.000 3.88 0.00 0.00 4.55
1959 2218 0.669318 TGTTTCTGATGGCGTCCGAC 60.669 55.000 3.88 0.00 0.00 4.79
1960 2219 1.079405 TTTCTGATGGCGTCCGACC 60.079 57.895 3.88 0.00 0.00 4.79
1961 2220 1.822114 TTTCTGATGGCGTCCGACCA 61.822 55.000 3.88 5.55 42.61 4.02
1962 2221 1.822114 TTCTGATGGCGTCCGACCAA 61.822 55.000 3.88 0.00 41.49 3.67
1963 2222 1.811266 CTGATGGCGTCCGACCAAG 60.811 63.158 3.88 0.00 41.49 3.61
1964 2223 2.264794 GATGGCGTCCGACCAAGT 59.735 61.111 0.00 0.00 41.49 3.16
1965 2224 2.047274 ATGGCGTCCGACCAAGTG 60.047 61.111 6.87 0.00 41.49 3.16
1966 2225 2.781595 GATGGCGTCCGACCAAGTGT 62.782 60.000 0.00 0.00 41.49 3.55
1967 2226 2.737376 GGCGTCCGACCAAGTGTC 60.737 66.667 0.00 0.00 40.81 3.67
1968 2227 2.338984 GCGTCCGACCAAGTGTCT 59.661 61.111 0.00 0.00 42.13 3.41
1979 2238 4.499188 CGACCAAGTGTCTGAAACAGAGTA 60.499 45.833 0.02 0.00 41.46 2.59
2065 2336 1.296715 GAGCAACGTCCTGGTGGAT 59.703 57.895 0.00 0.00 45.29 3.41
2205 2477 2.551071 CCTGTCTGAAACTCTGAACCCC 60.551 54.545 0.00 0.00 0.00 4.95
2206 2478 2.370189 CTGTCTGAAACTCTGAACCCCT 59.630 50.000 0.00 0.00 0.00 4.79
2207 2479 2.777692 TGTCTGAAACTCTGAACCCCTT 59.222 45.455 0.00 0.00 0.00 3.95
2209 2481 4.202326 TGTCTGAAACTCTGAACCCCTTAC 60.202 45.833 0.00 0.00 0.00 2.34
2210 2482 3.971305 TCTGAAACTCTGAACCCCTTACA 59.029 43.478 0.00 0.00 0.00 2.41
2211 2483 4.597507 TCTGAAACTCTGAACCCCTTACAT 59.402 41.667 0.00 0.00 0.00 2.29
2212 2484 4.906618 TGAAACTCTGAACCCCTTACATC 58.093 43.478 0.00 0.00 0.00 3.06
2213 2485 4.349636 TGAAACTCTGAACCCCTTACATCA 59.650 41.667 0.00 0.00 0.00 3.07
2214 2486 5.014123 TGAAACTCTGAACCCCTTACATCAT 59.986 40.000 0.00 0.00 0.00 2.45
2215 2487 4.494091 ACTCTGAACCCCTTACATCATG 57.506 45.455 0.00 0.00 0.00 3.07
2216 2488 3.200825 ACTCTGAACCCCTTACATCATGG 59.799 47.826 0.00 0.00 0.00 3.66
2217 2489 2.509548 TCTGAACCCCTTACATCATGGG 59.490 50.000 0.00 0.00 44.03 4.00
2221 2493 2.645838 CCCCTTACATCATGGGTCTG 57.354 55.000 0.00 0.00 39.56 3.51
2222 2494 1.846439 CCCCTTACATCATGGGTCTGT 59.154 52.381 0.00 0.00 39.56 3.41
2223 2495 2.158755 CCCCTTACATCATGGGTCTGTC 60.159 54.545 0.00 0.00 39.56 3.51
2224 2496 2.774234 CCCTTACATCATGGGTCTGTCT 59.226 50.000 0.00 0.00 36.94 3.41
2225 2497 3.967326 CCCTTACATCATGGGTCTGTCTA 59.033 47.826 0.00 0.00 36.94 2.59
2226 2498 4.039730 CCCTTACATCATGGGTCTGTCTAG 59.960 50.000 0.00 0.00 36.94 2.43
2227 2499 4.039730 CCTTACATCATGGGTCTGTCTAGG 59.960 50.000 0.00 0.41 0.00 3.02
2228 2500 3.404869 ACATCATGGGTCTGTCTAGGA 57.595 47.619 0.00 0.00 0.00 2.94
2229 2501 3.034635 ACATCATGGGTCTGTCTAGGAC 58.965 50.000 0.00 0.00 0.00 3.85
2230 2502 1.763968 TCATGGGTCTGTCTAGGACG 58.236 55.000 0.00 0.00 34.95 4.79
2231 2503 0.103208 CATGGGTCTGTCTAGGACGC 59.897 60.000 7.46 7.46 43.74 5.19
2232 2504 4.013702 GGGTCTGTCTAGGACGCA 57.986 61.111 8.99 0.00 43.21 5.24
2233 2505 0.324368 TGGGTCTGTCTAGGACGCAT 60.324 55.000 11.58 0.00 46.46 4.73
2234 2506 0.386113 GGGTCTGTCTAGGACGCATC 59.614 60.000 8.99 0.00 43.21 3.91
2235 2507 1.394618 GGTCTGTCTAGGACGCATCT 58.605 55.000 0.00 0.00 34.95 2.90
2236 2508 2.573369 GGTCTGTCTAGGACGCATCTA 58.427 52.381 0.00 0.00 34.95 1.98
2237 2509 2.950309 GGTCTGTCTAGGACGCATCTAA 59.050 50.000 0.00 0.00 34.95 2.10
2238 2510 3.243134 GGTCTGTCTAGGACGCATCTAAC 60.243 52.174 0.00 0.00 34.95 2.34
2239 2511 3.377485 GTCTGTCTAGGACGCATCTAACA 59.623 47.826 0.00 0.00 34.95 2.41
2240 2512 4.036971 GTCTGTCTAGGACGCATCTAACAT 59.963 45.833 0.00 0.00 34.95 2.71
2241 2513 4.036852 TCTGTCTAGGACGCATCTAACATG 59.963 45.833 0.00 0.00 34.95 3.21
2242 2514 3.951680 TGTCTAGGACGCATCTAACATGA 59.048 43.478 0.00 0.00 34.95 3.07
2243 2515 4.584743 TGTCTAGGACGCATCTAACATGAT 59.415 41.667 0.00 0.00 34.95 2.45
2244 2516 4.920340 GTCTAGGACGCATCTAACATGATG 59.080 45.833 0.00 0.00 44.72 3.07
2245 2517 3.827008 AGGACGCATCTAACATGATGT 57.173 42.857 0.00 0.00 44.02 3.06
2246 2518 3.722147 AGGACGCATCTAACATGATGTC 58.278 45.455 0.00 0.00 44.02 3.06
2247 2519 2.802816 GGACGCATCTAACATGATGTCC 59.197 50.000 0.00 9.38 44.02 4.02
2248 2520 3.457234 GACGCATCTAACATGATGTCCA 58.543 45.455 0.00 0.00 44.02 4.02
2249 2521 3.198068 ACGCATCTAACATGATGTCCAC 58.802 45.455 0.00 0.00 44.02 4.02
2250 2522 3.118629 ACGCATCTAACATGATGTCCACT 60.119 43.478 0.00 0.00 44.02 4.00
2251 2523 4.099419 ACGCATCTAACATGATGTCCACTA 59.901 41.667 0.00 0.00 44.02 2.74
2252 2524 5.221521 ACGCATCTAACATGATGTCCACTAT 60.222 40.000 0.00 0.00 44.02 2.12
2253 2525 5.119743 CGCATCTAACATGATGTCCACTATG 59.880 44.000 0.00 0.85 44.02 2.23
2254 2526 5.994054 GCATCTAACATGATGTCCACTATGT 59.006 40.000 0.00 0.00 44.02 2.29
2255 2527 6.484643 GCATCTAACATGATGTCCACTATGTT 59.515 38.462 0.00 12.63 44.02 2.71
2256 2528 7.012704 GCATCTAACATGATGTCCACTATGTTT 59.987 37.037 0.00 0.00 44.02 2.83
2257 2529 7.848223 TCTAACATGATGTCCACTATGTTTG 57.152 36.000 0.00 11.76 42.09 2.93
2258 2530 7.394016 TCTAACATGATGTCCACTATGTTTGT 58.606 34.615 0.00 0.00 42.09 2.83
2259 2531 5.885230 ACATGATGTCCACTATGTTTGTG 57.115 39.130 0.00 0.00 30.05 3.33
2310 2582 5.669164 TTTTTGTTCCTTGTTGCTACCTT 57.331 34.783 0.00 0.00 0.00 3.50
2311 2583 6.777213 TTTTTGTTCCTTGTTGCTACCTTA 57.223 33.333 0.00 0.00 0.00 2.69
2312 2584 6.969993 TTTTGTTCCTTGTTGCTACCTTAT 57.030 33.333 0.00 0.00 0.00 1.73
2313 2585 6.969993 TTTGTTCCTTGTTGCTACCTTATT 57.030 33.333 0.00 0.00 0.00 1.40
2314 2586 6.969993 TTGTTCCTTGTTGCTACCTTATTT 57.030 33.333 0.00 0.00 0.00 1.40
2315 2587 6.325919 TGTTCCTTGTTGCTACCTTATTTG 57.674 37.500 0.00 0.00 0.00 2.32
2316 2588 5.830991 TGTTCCTTGTTGCTACCTTATTTGT 59.169 36.000 0.00 0.00 0.00 2.83
2317 2589 5.957842 TCCTTGTTGCTACCTTATTTGTG 57.042 39.130 0.00 0.00 0.00 3.33
2318 2590 4.764823 TCCTTGTTGCTACCTTATTTGTGG 59.235 41.667 0.00 0.00 0.00 4.17
2319 2591 4.082245 CCTTGTTGCTACCTTATTTGTGGG 60.082 45.833 0.00 0.00 0.00 4.61
2320 2592 4.374689 TGTTGCTACCTTATTTGTGGGA 57.625 40.909 0.00 0.00 0.00 4.37
2321 2593 4.331968 TGTTGCTACCTTATTTGTGGGAG 58.668 43.478 0.00 0.00 37.35 4.30
2322 2594 4.042311 TGTTGCTACCTTATTTGTGGGAGA 59.958 41.667 0.00 0.00 36.39 3.71
2323 2595 5.193679 GTTGCTACCTTATTTGTGGGAGAT 58.806 41.667 0.00 0.00 36.39 2.75
2324 2596 5.450818 TGCTACCTTATTTGTGGGAGATT 57.549 39.130 0.00 0.00 36.39 2.40
2325 2597 6.569127 TGCTACCTTATTTGTGGGAGATTA 57.431 37.500 0.00 0.00 36.39 1.75
2326 2598 6.591935 TGCTACCTTATTTGTGGGAGATTAG 58.408 40.000 0.00 0.00 36.39 1.73
2327 2599 6.385759 TGCTACCTTATTTGTGGGAGATTAGA 59.614 38.462 0.00 0.00 36.39 2.10
2328 2600 7.072454 TGCTACCTTATTTGTGGGAGATTAGAT 59.928 37.037 0.00 0.00 36.39 1.98
2329 2601 7.389053 GCTACCTTATTTGTGGGAGATTAGATG 59.611 40.741 0.00 0.00 36.39 2.90
2330 2602 7.213178 ACCTTATTTGTGGGAGATTAGATGT 57.787 36.000 0.00 0.00 0.00 3.06
2331 2603 7.056635 ACCTTATTTGTGGGAGATTAGATGTG 58.943 38.462 0.00 0.00 0.00 3.21
2332 2604 7.092444 ACCTTATTTGTGGGAGATTAGATGTGA 60.092 37.037 0.00 0.00 0.00 3.58
2333 2605 7.227512 CCTTATTTGTGGGAGATTAGATGTGAC 59.772 40.741 0.00 0.00 0.00 3.67
2334 2606 5.497464 TTTGTGGGAGATTAGATGTGACA 57.503 39.130 0.00 0.00 0.00 3.58
2335 2607 5.698741 TTGTGGGAGATTAGATGTGACAT 57.301 39.130 0.00 0.00 0.00 3.06
2336 2608 5.698741 TGTGGGAGATTAGATGTGACATT 57.301 39.130 0.00 0.00 0.00 2.71
2337 2609 6.065976 TGTGGGAGATTAGATGTGACATTT 57.934 37.500 0.00 0.00 0.00 2.32
2338 2610 6.484288 TGTGGGAGATTAGATGTGACATTTT 58.516 36.000 0.00 0.00 0.00 1.82
2339 2611 7.629157 TGTGGGAGATTAGATGTGACATTTTA 58.371 34.615 0.00 0.00 0.00 1.52
2340 2612 8.106462 TGTGGGAGATTAGATGTGACATTTTAA 58.894 33.333 0.00 2.94 0.00 1.52
2341 2613 8.956426 GTGGGAGATTAGATGTGACATTTTAAA 58.044 33.333 0.00 0.00 0.00 1.52
2342 2614 9.527157 TGGGAGATTAGATGTGACATTTTAAAA 57.473 29.630 2.51 2.51 0.00 1.52
2431 2712 0.030908 CCCGCTCTTATCTGACCGTC 59.969 60.000 0.00 0.00 0.00 4.79
2439 2720 0.815095 TATCTGACCGTCACGCATGT 59.185 50.000 0.00 0.00 0.00 3.21
2443 2724 1.372997 GACCGTCACGCATGTGTCT 60.373 57.895 9.44 0.00 46.49 3.41
2444 2725 1.344942 GACCGTCACGCATGTGTCTC 61.345 60.000 9.44 4.69 46.49 3.36
2553 2834 1.600636 CGCCAGCTTGGTTTCTCCA 60.601 57.895 4.45 0.00 45.60 3.86
2597 2882 7.365741 GCTCATTGGGTAATTAATCAGTGATG 58.634 38.462 6.34 0.00 0.00 3.07
2599 2884 7.062322 TCATTGGGTAATTAATCAGTGATGCT 58.938 34.615 6.34 0.00 0.00 3.79
2603 2888 8.995027 TGGGTAATTAATCAGTGATGCTAATT 57.005 30.769 19.50 19.50 0.00 1.40
2619 2904 9.955208 TGATGCTAATTTTCAGTATATTTGCAG 57.045 29.630 0.00 0.00 41.03 4.41
2659 2944 7.569639 AGTACTAGTAGCATCGAAGATTTCA 57.430 36.000 1.87 0.00 45.12 2.69
2660 2945 7.419204 AGTACTAGTAGCATCGAAGATTTCAC 58.581 38.462 1.87 0.00 45.12 3.18
2663 2948 5.854010 AGTAGCATCGAAGATTTCACCTA 57.146 39.130 0.00 0.00 45.12 3.08
2665 2950 6.821388 AGTAGCATCGAAGATTTCACCTAAT 58.179 36.000 0.00 0.00 45.12 1.73
2702 2987 6.206498 AGCTTCAGTTTCGTCCAAAATTAAC 58.794 36.000 0.00 0.00 0.00 2.01
2759 3047 3.942351 TGAATGTGTCAGCTGGAGG 57.058 52.632 15.13 0.00 0.00 4.30
2890 3181 2.361610 CCCAAGATGCGGCTGGTT 60.362 61.111 0.00 0.00 0.00 3.67
3002 3293 3.048501 CTCTTCACGTCATGATCATCCG 58.951 50.000 18.17 18.17 37.11 4.18
3017 3310 2.611751 TCATCCGATATTTGTTGCCACG 59.388 45.455 0.00 0.00 0.00 4.94
3018 3311 1.374560 TCCGATATTTGTTGCCACGG 58.625 50.000 0.00 0.00 40.16 4.94
3020 3313 1.063469 CCGATATTTGTTGCCACGGTC 59.937 52.381 0.00 0.00 35.21 4.79
3021 3314 1.063469 CGATATTTGTTGCCACGGTCC 59.937 52.381 0.00 0.00 0.00 4.46
3029 3322 2.490115 TGTTGCCACGGTCCATATTTTC 59.510 45.455 0.00 0.00 0.00 2.29
3030 3323 2.752903 GTTGCCACGGTCCATATTTTCT 59.247 45.455 0.00 0.00 0.00 2.52
3037 3330 5.048364 CCACGGTCCATATTTTCTTGTTTCA 60.048 40.000 0.00 0.00 0.00 2.69
3073 3366 7.500141 ACTTTAGTTGCCTGAAAATGAATTGT 58.500 30.769 0.00 0.00 0.00 2.71
3076 3369 2.674954 TGCCTGAAAATGAATTGTGCG 58.325 42.857 0.00 0.00 0.00 5.34
3077 3370 1.391144 GCCTGAAAATGAATTGTGCGC 59.609 47.619 0.00 0.00 0.00 6.09
3079 3372 2.353011 CCTGAAAATGAATTGTGCGCCT 60.353 45.455 4.18 0.00 0.00 5.52
3082 3375 2.352503 AAATGAATTGTGCGCCTGTC 57.647 45.000 4.18 0.00 0.00 3.51
3083 3376 0.527565 AATGAATTGTGCGCCTGTCC 59.472 50.000 4.18 0.00 0.00 4.02
3122 3415 2.092211 GCTAGAAATGAACACGACGTGG 59.908 50.000 29.86 13.45 37.94 4.94
3143 3436 0.465097 GTCGTCGATGGAGGGGAGTA 60.465 60.000 4.48 0.00 0.00 2.59
3151 3444 1.455402 GGAGGGGAGTACGAGGGTC 60.455 68.421 0.00 0.00 0.00 4.46
3174 3467 4.469945 CGAAGGATATGGGTGTGGGTATAT 59.530 45.833 0.00 0.00 0.00 0.86
3229 3523 0.690077 GGTTAGAGGGATGACCGGGT 60.690 60.000 6.32 0.00 46.96 5.28
3355 3649 1.741770 GCGGCTCGACAATGGAAGT 60.742 57.895 0.00 0.00 0.00 3.01
3370 3664 3.625853 TGGAAGTGGTTGTCAACAATGA 58.374 40.909 17.29 0.00 38.24 2.57
3375 3669 2.948979 GTGGTTGTCAACAATGAGGACA 59.051 45.455 17.29 7.43 39.60 4.02
3381 3675 3.117701 TGTCAACAATGAGGACAAAGGGA 60.118 43.478 8.69 0.00 38.50 4.20
3473 3767 7.880160 TTGCATATAAAGCAACTTCCTATGT 57.120 32.000 10.79 0.00 46.13 2.29
3474 3768 8.972458 TTGCATATAAAGCAACTTCCTATGTA 57.028 30.769 10.79 4.60 46.13 2.29
3475 3769 8.972458 TGCATATAAAGCAACTTCCTATGTAA 57.028 30.769 1.15 0.00 39.39 2.41
3476 3770 9.573166 TGCATATAAAGCAACTTCCTATGTAAT 57.427 29.630 1.15 0.00 39.39 1.89
3482 3776 8.409358 AAAGCAACTTCCTATGTAATTTGTCT 57.591 30.769 0.00 0.00 0.00 3.41
3483 3777 8.409358 AAGCAACTTCCTATGTAATTTGTCTT 57.591 30.769 0.00 0.00 0.00 3.01
3484 3778 8.409358 AGCAACTTCCTATGTAATTTGTCTTT 57.591 30.769 0.00 0.00 0.00 2.52
3485 3779 8.860088 AGCAACTTCCTATGTAATTTGTCTTTT 58.140 29.630 0.00 0.00 0.00 2.27
3486 3780 9.476202 GCAACTTCCTATGTAATTTGTCTTTTT 57.524 29.630 0.00 0.00 0.00 1.94
3492 3786 8.792633 TCCTATGTAATTTGTCTTTTTCTGTGG 58.207 33.333 0.00 0.00 0.00 4.17
3493 3787 8.028938 CCTATGTAATTTGTCTTTTTCTGTGGG 58.971 37.037 0.00 0.00 0.00 4.61
3494 3788 6.155475 TGTAATTTGTCTTTTTCTGTGGGG 57.845 37.500 0.00 0.00 0.00 4.96
3518 3812 6.985059 GGGGTTGTGTACAATCTCTATACTTC 59.015 42.308 7.83 0.00 34.66 3.01
3535 3829 9.363401 TCTATACTTCATAGAAAAATCGGGAGA 57.637 33.333 0.00 0.00 42.20 3.71
3634 4226 8.062938 GGCTTGAAACATACTATCAAGTCTCCA 61.063 40.741 14.16 0.00 46.84 3.86
3638 4230 4.551671 ACATACTATCAAGTCTCCAGGCT 58.448 43.478 0.00 0.00 37.15 4.58
3646 4238 3.328931 TCAAGTCTCCAGGCTTGAATTCT 59.671 43.478 19.09 0.00 45.33 2.40
3647 4239 3.625649 AGTCTCCAGGCTTGAATTCTC 57.374 47.619 7.05 0.00 0.00 2.87
3648 4240 2.909006 AGTCTCCAGGCTTGAATTCTCA 59.091 45.455 7.05 0.00 0.00 3.27
3649 4241 3.328931 AGTCTCCAGGCTTGAATTCTCAA 59.671 43.478 7.05 0.00 39.30 3.02
3650 4242 4.074970 GTCTCCAGGCTTGAATTCTCAAA 58.925 43.478 7.05 0.00 41.05 2.69
3651 4243 4.074970 TCTCCAGGCTTGAATTCTCAAAC 58.925 43.478 7.05 0.00 41.05 2.93
3652 4244 3.822735 CTCCAGGCTTGAATTCTCAAACA 59.177 43.478 7.05 0.00 41.05 2.83
3653 4245 4.214310 TCCAGGCTTGAATTCTCAAACAA 58.786 39.130 7.05 0.00 41.05 2.83
3654 4246 4.648762 TCCAGGCTTGAATTCTCAAACAAA 59.351 37.500 7.05 0.00 41.05 2.83
3655 4247 4.986659 CCAGGCTTGAATTCTCAAACAAAG 59.013 41.667 7.05 1.30 41.05 2.77
3656 4248 5.452356 CCAGGCTTGAATTCTCAAACAAAGT 60.452 40.000 7.05 0.00 41.05 2.66
3657 4249 5.689068 CAGGCTTGAATTCTCAAACAAAGTC 59.311 40.000 7.05 1.68 41.05 3.01
3658 4250 5.595952 AGGCTTGAATTCTCAAACAAAGTCT 59.404 36.000 7.05 4.03 41.05 3.24
3659 4251 5.917447 GGCTTGAATTCTCAAACAAAGTCTC 59.083 40.000 7.05 0.00 41.05 3.36
3660 4252 5.917447 GCTTGAATTCTCAAACAAAGTCTCC 59.083 40.000 7.05 0.00 41.05 3.71
3661 4253 6.460123 GCTTGAATTCTCAAACAAAGTCTCCA 60.460 38.462 7.05 0.00 41.05 3.86
3662 4254 6.624352 TGAATTCTCAAACAAAGTCTCCAG 57.376 37.500 7.05 0.00 0.00 3.86
3663 4255 6.356556 TGAATTCTCAAACAAAGTCTCCAGA 58.643 36.000 7.05 0.00 0.00 3.86
3664 4256 6.260936 TGAATTCTCAAACAAAGTCTCCAGAC 59.739 38.462 7.05 0.00 45.08 3.51
3690 4282 6.025749 GGAAACTTCCTGAGGTTTTATTGG 57.974 41.667 8.53 0.00 44.11 3.16
3691 4283 5.538813 GGAAACTTCCTGAGGTTTTATTGGT 59.461 40.000 8.53 0.00 44.11 3.67
3692 4284 6.405278 AAACTTCCTGAGGTTTTATTGGTG 57.595 37.500 0.00 0.00 37.32 4.17
3693 4285 4.407365 ACTTCCTGAGGTTTTATTGGTGG 58.593 43.478 0.00 0.00 0.00 4.61
3694 4286 2.802719 TCCTGAGGTTTTATTGGTGGC 58.197 47.619 0.00 0.00 0.00 5.01
3695 4287 2.109128 TCCTGAGGTTTTATTGGTGGCA 59.891 45.455 0.00 0.00 0.00 4.92
3696 4288 2.896685 CCTGAGGTTTTATTGGTGGCAA 59.103 45.455 0.00 0.00 0.00 4.52
3697 4289 3.306019 CCTGAGGTTTTATTGGTGGCAAC 60.306 47.826 0.00 0.00 0.00 4.17
3709 4301 2.785743 TGGCAACATGGTACTCCCT 58.214 52.632 0.00 0.00 46.17 4.20
3710 4302 0.618458 TGGCAACATGGTACTCCCTC 59.382 55.000 0.00 0.00 46.17 4.30
3711 4303 0.107165 GGCAACATGGTACTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
3712 4304 0.462047 GCAACATGGTACTCCCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
3713 4305 0.902531 CAACATGGTACTCCCTCCGT 59.097 55.000 0.00 0.00 0.00 4.69
3714 4306 1.278127 CAACATGGTACTCCCTCCGTT 59.722 52.381 0.00 0.00 0.00 4.44
3715 4307 1.192428 ACATGGTACTCCCTCCGTTC 58.808 55.000 0.00 0.00 0.00 3.95
3716 4308 0.464452 CATGGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
3717 4309 0.338814 ATGGTACTCCCTCCGTTCCT 59.661 55.000 0.00 0.00 0.00 3.36
3718 4310 1.002069 TGGTACTCCCTCCGTTCCTA 58.998 55.000 0.00 0.00 0.00 2.94
3719 4311 1.358787 TGGTACTCCCTCCGTTCCTAA 59.641 52.381 0.00 0.00 0.00 2.69
3720 4312 2.225343 TGGTACTCCCTCCGTTCCTAAA 60.225 50.000 0.00 0.00 0.00 1.85
3721 4313 3.036819 GGTACTCCCTCCGTTCCTAAAT 58.963 50.000 0.00 0.00 0.00 1.40
3722 4314 4.218312 GGTACTCCCTCCGTTCCTAAATA 58.782 47.826 0.00 0.00 0.00 1.40
3723 4315 4.837298 GGTACTCCCTCCGTTCCTAAATAT 59.163 45.833 0.00 0.00 0.00 1.28
3724 4316 6.012745 GGTACTCCCTCCGTTCCTAAATATA 58.987 44.000 0.00 0.00 0.00 0.86
3725 4317 6.494835 GGTACTCCCTCCGTTCCTAAATATAA 59.505 42.308 0.00 0.00 0.00 0.98
3726 4318 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3727 4319 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3728 4320 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3729 4321 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3730 4322 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3731 4323 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3732 4324 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3733 4325 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3750 4342 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
3751 4343 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
3752 4344 7.492994 GTCTTTGTAGAGATTTCACTATGGACC 59.507 40.741 0.00 0.00 0.00 4.46
3753 4345 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
3754 4346 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
3755 4347 4.392921 AGAGATTTCACTATGGACCACG 57.607 45.455 0.00 0.00 0.00 4.94
3756 4348 3.769844 AGAGATTTCACTATGGACCACGT 59.230 43.478 0.00 0.00 0.00 4.49
3757 4349 4.954202 AGAGATTTCACTATGGACCACGTA 59.046 41.667 0.00 0.00 0.00 3.57
3758 4350 5.007385 AGATTTCACTATGGACCACGTAC 57.993 43.478 0.00 0.00 0.00 3.67
3759 4351 2.925578 TTCACTATGGACCACGTACG 57.074 50.000 15.01 15.01 0.00 3.67
3760 4352 1.097232 TCACTATGGACCACGTACGG 58.903 55.000 21.06 8.46 0.00 4.02
3761 4353 1.097232 CACTATGGACCACGTACGGA 58.903 55.000 21.06 0.00 0.00 4.69
3762 4354 1.679680 CACTATGGACCACGTACGGAT 59.320 52.381 21.06 3.85 0.00 4.18
3763 4355 1.679680 ACTATGGACCACGTACGGATG 59.320 52.381 21.06 9.60 0.00 3.51
3764 4356 1.679680 CTATGGACCACGTACGGATGT 59.320 52.381 21.06 13.00 0.00 3.06
3765 4357 1.766494 ATGGACCACGTACGGATGTA 58.234 50.000 21.06 1.50 0.00 2.29
3766 4358 1.766494 TGGACCACGTACGGATGTAT 58.234 50.000 21.06 0.00 32.11 2.29
3767 4359 2.929641 TGGACCACGTACGGATGTATA 58.070 47.619 21.06 3.42 32.11 1.47
3768 4360 3.489355 TGGACCACGTACGGATGTATAT 58.511 45.455 21.06 0.00 32.11 0.86
3769 4361 4.650734 TGGACCACGTACGGATGTATATA 58.349 43.478 21.06 0.00 32.11 0.86
3770 4362 4.696877 TGGACCACGTACGGATGTATATAG 59.303 45.833 21.06 0.00 32.11 1.31
3771 4363 4.937620 GGACCACGTACGGATGTATATAGA 59.062 45.833 21.06 0.00 32.11 1.98
3772 4364 5.587844 GGACCACGTACGGATGTATATAGAT 59.412 44.000 21.06 0.00 32.11 1.98
3773 4365 6.432607 ACCACGTACGGATGTATATAGATG 57.567 41.667 21.06 3.48 32.11 2.90
3774 4366 5.163683 ACCACGTACGGATGTATATAGATGC 60.164 44.000 21.06 0.00 32.11 3.91
3775 4367 5.163693 CCACGTACGGATGTATATAGATGCA 60.164 44.000 21.06 0.00 32.11 3.96
3776 4368 6.459710 CCACGTACGGATGTATATAGATGCAT 60.460 42.308 21.06 0.00 40.68 3.96
3777 4369 6.972901 CACGTACGGATGTATATAGATGCATT 59.027 38.462 21.06 1.23 38.38 3.56
3778 4370 7.488150 CACGTACGGATGTATATAGATGCATTT 59.512 37.037 21.06 0.00 38.38 2.32
3779 4371 8.033038 ACGTACGGATGTATATAGATGCATTTT 58.967 33.333 21.06 0.00 38.38 1.82
3780 4372 9.511144 CGTACGGATGTATATAGATGCATTTTA 57.489 33.333 7.57 0.00 38.38 1.52
3783 4375 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
3784 4376 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
3795 4387 9.270640 AGATGCATTTTAGAGTATGATTCACTC 57.729 33.333 0.00 0.00 42.30 3.51
3796 4388 8.969260 ATGCATTTTAGAGTATGATTCACTCA 57.031 30.769 0.00 0.00 44.03 3.41
3797 4389 8.969260 TGCATTTTAGAGTATGATTCACTCAT 57.031 30.769 5.38 0.00 46.49 2.90
3798 4390 9.399797 TGCATTTTAGAGTATGATTCACTCATT 57.600 29.630 5.38 0.00 42.07 2.57
3805 4397 8.273780 AGAGTATGATTCACTCATTTTGTTCC 57.726 34.615 5.38 0.00 42.07 3.62
3806 4398 7.065085 AGAGTATGATTCACTCATTTTGTTCCG 59.935 37.037 5.38 0.00 42.07 4.30
3807 4399 5.964958 ATGATTCACTCATTTTGTTCCGT 57.035 34.783 0.00 0.00 42.07 4.69
3808 4400 7.822334 AGTATGATTCACTCATTTTGTTCCGTA 59.178 33.333 0.00 0.00 42.07 4.02
3809 4401 7.630242 ATGATTCACTCATTTTGTTCCGTAT 57.370 32.000 0.00 0.00 42.07 3.06
3810 4402 6.841119 TGATTCACTCATTTTGTTCCGTATG 58.159 36.000 0.00 0.00 0.00 2.39
3811 4403 6.429692 TGATTCACTCATTTTGTTCCGTATGT 59.570 34.615 0.00 0.00 0.00 2.29
3812 4404 7.604545 TGATTCACTCATTTTGTTCCGTATGTA 59.395 33.333 0.00 0.00 0.00 2.29
3813 4405 7.731882 TTCACTCATTTTGTTCCGTATGTAA 57.268 32.000 0.00 0.00 0.00 2.41
3814 4406 7.915293 TCACTCATTTTGTTCCGTATGTAAT 57.085 32.000 0.00 0.00 0.00 1.89
3815 4407 7.970384 TCACTCATTTTGTTCCGTATGTAATC 58.030 34.615 0.00 0.00 0.00 1.75
3816 4408 7.065324 TCACTCATTTTGTTCCGTATGTAATCC 59.935 37.037 0.00 0.00 0.00 3.01
3817 4409 6.882140 ACTCATTTTGTTCCGTATGTAATCCA 59.118 34.615 0.00 0.00 0.00 3.41
3818 4410 7.556275 ACTCATTTTGTTCCGTATGTAATCCAT 59.444 33.333 0.00 0.00 37.58 3.41
3819 4411 8.966069 TCATTTTGTTCCGTATGTAATCCATA 57.034 30.769 0.00 0.00 34.86 2.74
3820 4412 9.051679 TCATTTTGTTCCGTATGTAATCCATAG 57.948 33.333 0.00 0.00 36.71 2.23
3821 4413 8.836413 CATTTTGTTCCGTATGTAATCCATAGT 58.164 33.333 0.00 0.00 36.71 2.12
3822 4414 7.780008 TTTGTTCCGTATGTAATCCATAGTG 57.220 36.000 0.00 0.00 36.71 2.74
3823 4415 6.718522 TGTTCCGTATGTAATCCATAGTGA 57.281 37.500 0.00 0.00 36.71 3.41
3824 4416 7.114866 TGTTCCGTATGTAATCCATAGTGAA 57.885 36.000 0.00 0.00 36.71 3.18
3825 4417 7.557724 TGTTCCGTATGTAATCCATAGTGAAA 58.442 34.615 0.00 0.00 36.71 2.69
3826 4418 8.208224 TGTTCCGTATGTAATCCATAGTGAAAT 58.792 33.333 0.00 0.00 36.71 2.17
3827 4419 8.709646 GTTCCGTATGTAATCCATAGTGAAATC 58.290 37.037 0.00 0.00 36.71 2.17
3828 4420 8.190326 TCCGTATGTAATCCATAGTGAAATCT 57.810 34.615 0.00 0.00 36.71 2.40
3829 4421 8.304596 TCCGTATGTAATCCATAGTGAAATCTC 58.695 37.037 0.00 0.00 36.71 2.75
3830 4422 8.307483 CCGTATGTAATCCATAGTGAAATCTCT 58.693 37.037 0.00 0.00 36.71 3.10
3831 4423 9.698309 CGTATGTAATCCATAGTGAAATCTCTT 57.302 33.333 0.00 0.00 36.71 2.85
3835 4427 9.958180 TGTAATCCATAGTGAAATCTCTTCAAA 57.042 29.630 0.00 0.00 0.00 2.69
3838 4430 8.729805 ATCCATAGTGAAATCTCTTCAAAGAC 57.270 34.615 0.00 0.00 0.00 3.01
3839 4431 7.911651 TCCATAGTGAAATCTCTTCAAAGACT 58.088 34.615 0.00 0.00 0.00 3.24
3840 4432 8.378565 TCCATAGTGAAATCTCTTCAAAGACTT 58.621 33.333 0.00 0.00 0.00 3.01
3841 4433 9.658799 CCATAGTGAAATCTCTTCAAAGACTTA 57.341 33.333 0.00 0.00 0.00 2.24
3847 4439 9.877178 TGAAATCTCTTCAAAGACTTATACTCC 57.123 33.333 0.00 0.00 0.00 3.85
3848 4440 9.320352 GAAATCTCTTCAAAGACTTATACTCCC 57.680 37.037 0.00 0.00 0.00 4.30
3849 4441 8.616799 AATCTCTTCAAAGACTTATACTCCCT 57.383 34.615 0.00 0.00 0.00 4.20
3850 4442 7.648039 TCTCTTCAAAGACTTATACTCCCTC 57.352 40.000 0.00 0.00 0.00 4.30
3851 4443 6.608002 TCTCTTCAAAGACTTATACTCCCTCC 59.392 42.308 0.00 0.00 0.00 4.30
3852 4444 5.360144 TCTTCAAAGACTTATACTCCCTCCG 59.640 44.000 0.00 0.00 0.00 4.63
3853 4445 4.607239 TCAAAGACTTATACTCCCTCCGT 58.393 43.478 0.00 0.00 0.00 4.69
3854 4446 5.021458 TCAAAGACTTATACTCCCTCCGTT 58.979 41.667 0.00 0.00 0.00 4.44
3855 4447 5.482878 TCAAAGACTTATACTCCCTCCGTTT 59.517 40.000 0.00 0.00 0.00 3.60
3856 4448 5.595257 AAGACTTATACTCCCTCCGTTTC 57.405 43.478 0.00 0.00 0.00 2.78
3857 4449 3.631227 AGACTTATACTCCCTCCGTTTCG 59.369 47.826 0.00 0.00 0.00 3.46
3858 4450 3.624777 ACTTATACTCCCTCCGTTTCGA 58.375 45.455 0.00 0.00 0.00 3.71
3859 4451 4.019174 ACTTATACTCCCTCCGTTTCGAA 58.981 43.478 0.00 0.00 0.00 3.71
3860 4452 4.463891 ACTTATACTCCCTCCGTTTCGAAA 59.536 41.667 6.47 6.47 0.00 3.46
3861 4453 5.128335 ACTTATACTCCCTCCGTTTCGAAAT 59.872 40.000 14.69 0.00 0.00 2.17
3862 4454 6.322201 ACTTATACTCCCTCCGTTTCGAAATA 59.678 38.462 14.69 2.29 0.00 1.40
3863 4455 5.803237 ATACTCCCTCCGTTTCGAAATAT 57.197 39.130 14.69 1.65 0.00 1.28
3864 4456 6.906157 ATACTCCCTCCGTTTCGAAATATA 57.094 37.500 14.69 1.57 0.00 0.86
3865 4457 5.603170 ACTCCCTCCGTTTCGAAATATAA 57.397 39.130 14.69 0.00 0.00 0.98
3866 4458 5.598769 ACTCCCTCCGTTTCGAAATATAAG 58.401 41.667 14.69 9.26 0.00 1.73
3867 4459 5.128335 ACTCCCTCCGTTTCGAAATATAAGT 59.872 40.000 14.69 8.70 0.00 2.24
3868 4460 5.594926 TCCCTCCGTTTCGAAATATAAGTC 58.405 41.667 14.69 0.00 0.00 3.01
3869 4461 5.361857 TCCCTCCGTTTCGAAATATAAGTCT 59.638 40.000 14.69 0.00 0.00 3.24
3870 4462 6.047231 CCCTCCGTTTCGAAATATAAGTCTT 58.953 40.000 14.69 0.00 0.00 3.01
3871 4463 6.537660 CCCTCCGTTTCGAAATATAAGTCTTT 59.462 38.462 14.69 0.00 0.00 2.52
3872 4464 7.065443 CCCTCCGTTTCGAAATATAAGTCTTTT 59.935 37.037 14.69 0.00 0.00 2.27
3873 4465 8.448615 CCTCCGTTTCGAAATATAAGTCTTTTT 58.551 33.333 14.69 0.00 0.00 1.94
3947 4539 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
3948 4540 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
3949 4541 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
3950 4542 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3951 4543 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3952 4544 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3953 4545 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3954 4546 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3955 4547 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3956 4548 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3957 4549 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3958 4550 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3959 4551 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3960 4552 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
3961 4553 5.753438 TCATTTTGCTCCGTATGTAGTCATC 59.247 40.000 0.00 0.00 35.70 2.92
3962 4554 5.339008 TTTTGCTCCGTATGTAGTCATCT 57.661 39.130 0.00 0.00 35.70 2.90
3963 4555 6.459670 TTTTGCTCCGTATGTAGTCATCTA 57.540 37.500 0.00 0.00 35.70 1.98
3964 4556 6.650427 TTTGCTCCGTATGTAGTCATCTAT 57.350 37.500 0.00 0.00 35.70 1.98
3965 4557 6.650427 TTGCTCCGTATGTAGTCATCTATT 57.350 37.500 0.00 0.00 35.70 1.73
3966 4558 6.013842 TGCTCCGTATGTAGTCATCTATTG 57.986 41.667 0.00 0.00 35.70 1.90
3967 4559 5.048013 TGCTCCGTATGTAGTCATCTATTGG 60.048 44.000 0.00 0.00 35.70 3.16
3968 4560 5.183331 GCTCCGTATGTAGTCATCTATTGGA 59.817 44.000 0.00 0.00 35.70 3.53
3969 4561 6.294564 GCTCCGTATGTAGTCATCTATTGGAA 60.295 42.308 0.00 0.00 35.70 3.53
3970 4562 7.577807 GCTCCGTATGTAGTCATCTATTGGAAT 60.578 40.741 0.00 0.00 35.70 3.01
3971 4563 7.827701 TCCGTATGTAGTCATCTATTGGAATC 58.172 38.462 0.00 0.00 35.70 2.52
3972 4564 7.670140 TCCGTATGTAGTCATCTATTGGAATCT 59.330 37.037 0.00 0.00 35.70 2.40
3973 4565 7.971168 CCGTATGTAGTCATCTATTGGAATCTC 59.029 40.741 0.00 0.00 35.70 2.75
3974 4566 8.735315 CGTATGTAGTCATCTATTGGAATCTCT 58.265 37.037 0.00 0.00 35.70 3.10
3978 4570 9.868160 TGTAGTCATCTATTGGAATCTCTAGAA 57.132 33.333 0.00 0.00 0.00 2.10
3981 4573 9.653516 AGTCATCTATTGGAATCTCTAGAAAGA 57.346 33.333 0.00 0.00 0.00 2.52
3982 4574 9.691362 GTCATCTATTGGAATCTCTAGAAAGAC 57.309 37.037 0.00 0.00 0.00 3.01
3983 4575 9.653516 TCATCTATTGGAATCTCTAGAAAGACT 57.346 33.333 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.492973 CAAGATGAATTTCAAGGGTTTTTACAT 57.507 29.630 2.68 0.00 0.00 2.29
35 36 8.700051 TCAAGATGAATTTCAAGGGTTTTTACA 58.300 29.630 2.68 0.00 0.00 2.41
36 37 8.978539 GTCAAGATGAATTTCAAGGGTTTTTAC 58.021 33.333 2.68 0.00 0.00 2.01
37 38 8.147704 GGTCAAGATGAATTTCAAGGGTTTTTA 58.852 33.333 2.68 0.00 0.00 1.52
38 39 6.992123 GGTCAAGATGAATTTCAAGGGTTTTT 59.008 34.615 2.68 0.00 0.00 1.94
39 40 6.327365 AGGTCAAGATGAATTTCAAGGGTTTT 59.673 34.615 2.68 0.00 0.00 2.43
40 41 5.840693 AGGTCAAGATGAATTTCAAGGGTTT 59.159 36.000 2.68 0.00 0.00 3.27
41 42 5.397360 AGGTCAAGATGAATTTCAAGGGTT 58.603 37.500 2.68 0.00 0.00 4.11
42 43 5.003096 AGGTCAAGATGAATTTCAAGGGT 57.997 39.130 2.68 0.00 0.00 4.34
43 44 5.012239 TGAGGTCAAGATGAATTTCAAGGG 58.988 41.667 2.68 0.00 0.00 3.95
44 45 6.770746 ATGAGGTCAAGATGAATTTCAAGG 57.229 37.500 2.68 0.00 0.00 3.61
45 46 7.544566 CCAAATGAGGTCAAGATGAATTTCAAG 59.455 37.037 2.68 0.00 0.00 3.02
46 47 7.380536 CCAAATGAGGTCAAGATGAATTTCAA 58.619 34.615 2.68 0.00 0.00 2.69
47 48 6.071221 CCCAAATGAGGTCAAGATGAATTTCA 60.071 38.462 0.75 0.75 0.00 2.69
48 49 6.335777 CCCAAATGAGGTCAAGATGAATTTC 58.664 40.000 0.00 0.00 0.00 2.17
49 50 5.337813 GCCCAAATGAGGTCAAGATGAATTT 60.338 40.000 0.00 0.00 0.00 1.82
50 51 4.161001 GCCCAAATGAGGTCAAGATGAATT 59.839 41.667 0.00 0.00 0.00 2.17
51 52 3.703052 GCCCAAATGAGGTCAAGATGAAT 59.297 43.478 0.00 0.00 0.00 2.57
52 53 3.091545 GCCCAAATGAGGTCAAGATGAA 58.908 45.455 0.00 0.00 0.00 2.57
53 54 2.309755 AGCCCAAATGAGGTCAAGATGA 59.690 45.455 0.00 0.00 0.00 2.92
54 55 2.426024 CAGCCCAAATGAGGTCAAGATG 59.574 50.000 0.00 0.00 0.00 2.90
55 56 2.309755 TCAGCCCAAATGAGGTCAAGAT 59.690 45.455 0.00 0.00 0.00 2.40
56 57 1.704628 TCAGCCCAAATGAGGTCAAGA 59.295 47.619 0.00 0.00 0.00 3.02
57 58 2.205022 TCAGCCCAAATGAGGTCAAG 57.795 50.000 0.00 0.00 0.00 3.02
58 59 2.041485 TCATCAGCCCAAATGAGGTCAA 59.959 45.455 0.00 0.00 30.75 3.18
59 60 1.634973 TCATCAGCCCAAATGAGGTCA 59.365 47.619 0.00 0.00 30.75 4.02
60 61 2.019984 GTCATCAGCCCAAATGAGGTC 58.980 52.381 0.00 0.00 32.76 3.85
61 62 1.679944 CGTCATCAGCCCAAATGAGGT 60.680 52.381 0.00 0.00 34.61 3.85
62 63 1.019673 CGTCATCAGCCCAAATGAGG 58.980 55.000 0.00 0.00 32.76 3.86
63 64 0.379669 GCGTCATCAGCCCAAATGAG 59.620 55.000 0.00 0.00 32.76 2.90
64 65 1.368345 CGCGTCATCAGCCCAAATGA 61.368 55.000 0.00 0.00 0.00 2.57
65 66 1.063006 CGCGTCATCAGCCCAAATG 59.937 57.895 0.00 0.00 0.00 2.32
66 67 0.464373 ATCGCGTCATCAGCCCAAAT 60.464 50.000 5.77 0.00 0.00 2.32
67 68 0.176910 TATCGCGTCATCAGCCCAAA 59.823 50.000 5.77 0.00 0.00 3.28
68 69 0.176910 TTATCGCGTCATCAGCCCAA 59.823 50.000 5.77 0.00 0.00 4.12
69 70 0.392706 ATTATCGCGTCATCAGCCCA 59.607 50.000 5.77 0.00 0.00 5.36
70 71 0.792640 CATTATCGCGTCATCAGCCC 59.207 55.000 5.77 0.00 0.00 5.19
71 72 1.502231 ACATTATCGCGTCATCAGCC 58.498 50.000 5.77 0.00 0.00 4.85
72 73 3.309388 AGTACATTATCGCGTCATCAGC 58.691 45.455 5.77 0.00 0.00 4.26
73 74 4.375405 GCAAGTACATTATCGCGTCATCAG 60.375 45.833 5.77 0.00 0.00 2.90
175 181 6.451064 AGTATAAACTAGTGCAAATTGGGC 57.549 37.500 0.00 0.00 32.84 5.36
195 201 6.547880 CCTGCTTCCAGATACTTCTTCTAGTA 59.452 42.308 0.00 0.00 41.77 1.82
196 202 5.362430 CCTGCTTCCAGATACTTCTTCTAGT 59.638 44.000 0.00 0.00 41.77 2.57
197 203 5.362430 ACCTGCTTCCAGATACTTCTTCTAG 59.638 44.000 0.00 0.00 41.77 2.43
318 328 3.368220 CCGAGCAAGGATGATGATAGAGG 60.368 52.174 0.00 0.00 0.00 3.69
411 428 2.583441 CCTGTCCTGACCTTCGGCA 61.583 63.158 0.00 0.00 0.00 5.69
499 517 1.209640 GCCGTCGTCGTCTCTTCTT 59.790 57.895 0.71 0.00 35.01 2.52
500 518 2.868920 GCCGTCGTCGTCTCTTCT 59.131 61.111 0.71 0.00 35.01 2.85
502 520 3.046087 TCGCCGTCGTCGTCTCTT 61.046 61.111 0.71 0.00 36.96 2.85
503 521 3.786586 GTCGCCGTCGTCGTCTCT 61.787 66.667 0.71 0.00 36.96 3.10
594 629 1.795170 GCACATGGCAACTTGGACGT 61.795 55.000 0.00 0.00 45.58 4.34
629 672 1.672356 CCAAGAAGACGCAGGTGGG 60.672 63.158 0.00 0.00 0.00 4.61
657 716 1.520342 CGAACAGAGCAGCTAGGCC 60.520 63.158 0.00 0.00 0.00 5.19
675 734 1.364626 CTGGTGCGCAATCAGAGGAC 61.365 60.000 27.82 8.06 37.64 3.85
766 833 1.513586 CGTACGGAAGCTGGACGAC 60.514 63.158 7.57 5.22 35.59 4.34
856 982 4.493747 GGGAAGAGCGACGACGGG 62.494 72.222 9.67 0.00 40.15 5.28
1158 1289 7.528996 TTTTGCTAGTGTCAGGTAGTAGTAA 57.471 36.000 0.00 0.00 0.00 2.24
1159 1290 7.528996 TTTTTGCTAGTGTCAGGTAGTAGTA 57.471 36.000 0.00 0.00 0.00 1.82
1160 1291 6.415206 TTTTTGCTAGTGTCAGGTAGTAGT 57.585 37.500 0.00 0.00 0.00 2.73
1161 1292 7.907214 AATTTTTGCTAGTGTCAGGTAGTAG 57.093 36.000 0.00 0.00 0.00 2.57
1162 1293 9.595823 GATAATTTTTGCTAGTGTCAGGTAGTA 57.404 33.333 0.00 0.00 0.00 1.82
1163 1294 7.553044 GGATAATTTTTGCTAGTGTCAGGTAGT 59.447 37.037 0.00 0.00 0.00 2.73
1164 1295 7.770897 AGGATAATTTTTGCTAGTGTCAGGTAG 59.229 37.037 0.00 0.00 0.00 3.18
1182 1313 4.641989 AGAACAAATCGCAGCAGGATAATT 59.358 37.500 0.00 0.00 0.00 1.40
1183 1314 4.202441 AGAACAAATCGCAGCAGGATAAT 58.798 39.130 0.00 0.00 0.00 1.28
1184 1315 3.609853 AGAACAAATCGCAGCAGGATAA 58.390 40.909 0.00 0.00 0.00 1.75
1186 1319 2.119801 AGAACAAATCGCAGCAGGAT 57.880 45.000 0.00 0.00 0.00 3.24
1193 1326 6.292596 GGCAATTACAAAAAGAACAAATCGCA 60.293 34.615 0.00 0.00 0.00 5.10
1196 1329 7.062848 CACGGCAATTACAAAAAGAACAAATC 58.937 34.615 0.00 0.00 0.00 2.17
1201 1334 3.121496 CGCACGGCAATTACAAAAAGAAC 60.121 43.478 0.00 0.00 0.00 3.01
1202 1335 3.046390 CGCACGGCAATTACAAAAAGAA 58.954 40.909 0.00 0.00 0.00 2.52
1205 1338 2.120232 CACGCACGGCAATTACAAAAA 58.880 42.857 0.00 0.00 0.00 1.94
1206 1339 1.333931 TCACGCACGGCAATTACAAAA 59.666 42.857 0.00 0.00 0.00 2.44
1207 1340 0.945099 TCACGCACGGCAATTACAAA 59.055 45.000 0.00 0.00 0.00 2.83
1209 1342 0.724549 GATCACGCACGGCAATTACA 59.275 50.000 0.00 0.00 0.00 2.41
1210 1343 0.315059 CGATCACGCACGGCAATTAC 60.315 55.000 0.00 0.00 0.00 1.89
1211 1344 0.738063 ACGATCACGCACGGCAATTA 60.738 50.000 0.00 0.00 43.96 1.40
1212 1345 2.032634 ACGATCACGCACGGCAATT 61.033 52.632 0.00 0.00 43.96 2.32
1213 1346 2.434185 ACGATCACGCACGGCAAT 60.434 55.556 0.00 0.00 43.96 3.56
1218 1351 2.317689 GCATCACGATCACGCACG 59.682 61.111 0.00 0.00 43.96 5.34
1219 1352 1.059369 GTGCATCACGATCACGCAC 59.941 57.895 5.53 5.53 45.25 5.34
1220 1353 3.473669 GTGCATCACGATCACGCA 58.526 55.556 0.00 0.00 43.96 5.24
1229 1362 1.196808 ACCAAACGATTCGTGCATCAC 59.803 47.619 13.22 0.00 39.99 3.06
1232 1365 1.732259 GAGACCAAACGATTCGTGCAT 59.268 47.619 13.22 0.00 39.99 3.96
1242 1398 1.006102 ACTCCGCTGAGACCAAACG 60.006 57.895 12.54 0.00 41.42 3.60
1503 1665 1.329292 CGGCAGTTCAGAAACGTTCAA 59.671 47.619 0.00 0.00 40.48 2.69
1518 1717 0.793861 TCGAAACGAAAATCCGGCAG 59.206 50.000 0.00 0.00 31.06 4.85
1601 1825 4.790962 CCGCCTCACCTGCAGCAT 62.791 66.667 8.66 0.00 0.00 3.79
1744 1999 0.524862 GAATGGAGCTGTGCAACTGG 59.475 55.000 0.00 0.00 38.04 4.00
1769 2025 1.769733 TTGCTGCTTCGAATTTGTGC 58.230 45.000 0.00 0.00 0.00 4.57
1770 2026 3.114809 TGTTTGCTGCTTCGAATTTGTG 58.885 40.909 0.00 0.00 0.00 3.33
1802 2058 0.104855 TGATGTAGGGTCTGCGCATC 59.895 55.000 12.24 7.44 37.17 3.91
1854 2110 1.004560 TCTGCTTGAACTCCAGCCG 60.005 57.895 0.74 0.00 0.00 5.52
1908 2164 5.772672 TGCATTGTGTAATAAGTTCCCTGTT 59.227 36.000 0.00 0.00 0.00 3.16
1909 2165 5.183140 GTGCATTGTGTAATAAGTTCCCTGT 59.817 40.000 0.00 0.00 0.00 4.00
1912 2168 5.648092 AGAGTGCATTGTGTAATAAGTTCCC 59.352 40.000 0.00 0.00 0.00 3.97
1913 2169 6.546395 CAGAGTGCATTGTGTAATAAGTTCC 58.454 40.000 0.00 0.00 0.00 3.62
1935 2194 0.877071 ACGCCATCAGAAACAAGCAG 59.123 50.000 0.00 0.00 0.00 4.24
1946 2205 2.264480 CTTGGTCGGACGCCATCA 59.736 61.111 1.43 0.00 35.71 3.07
1947 2206 2.100631 CACTTGGTCGGACGCCATC 61.101 63.158 1.43 0.00 35.71 3.51
1948 2207 2.047274 CACTTGGTCGGACGCCAT 60.047 61.111 1.43 0.00 35.71 4.40
1949 2208 3.509137 GACACTTGGTCGGACGCCA 62.509 63.158 1.43 4.24 36.65 5.69
1950 2209 2.737376 GACACTTGGTCGGACGCC 60.737 66.667 1.43 0.00 36.65 5.68
1957 2216 8.473899 CAGATACTCTGTTTCAGACACTTGGTC 61.474 44.444 0.00 0.00 41.93 4.02
1958 2217 3.914426 ACTCTGTTTCAGACACTTGGT 57.086 42.857 0.00 0.00 35.39 3.67
1959 2218 5.636965 CAGATACTCTGTTTCAGACACTTGG 59.363 44.000 0.00 0.00 39.58 3.61
1960 2219 6.702972 CAGATACTCTGTTTCAGACACTTG 57.297 41.667 0.00 0.00 39.58 3.16
2023 2294 1.067295 TGAAGCCCTTGTGGATGAGT 58.933 50.000 0.00 0.00 35.39 3.41
2024 2295 2.089980 CTTGAAGCCCTTGTGGATGAG 58.910 52.381 0.00 0.00 35.39 2.90
2026 2297 1.815003 GTCTTGAAGCCCTTGTGGATG 59.185 52.381 0.00 0.00 35.39 3.51
2065 2336 1.347707 ACCTTGGCGATGAAGTTCTCA 59.652 47.619 4.17 0.00 38.81 3.27
2159 2430 2.090831 ACTCTGGATCCTGGTAGATGCT 60.091 50.000 17.73 0.00 35.75 3.79
2205 2477 4.895889 TCCTAGACAGACCCATGATGTAAG 59.104 45.833 0.00 0.00 0.00 2.34
2206 2478 4.649674 GTCCTAGACAGACCCATGATGTAA 59.350 45.833 0.00 0.00 32.09 2.41
2207 2479 4.215908 GTCCTAGACAGACCCATGATGTA 58.784 47.826 0.00 0.00 32.09 2.29
2209 2481 2.035193 CGTCCTAGACAGACCCATGATG 59.965 54.545 0.00 0.00 32.09 3.07
2210 2482 2.311463 CGTCCTAGACAGACCCATGAT 58.689 52.381 0.00 0.00 32.09 2.45
2211 2483 1.763968 CGTCCTAGACAGACCCATGA 58.236 55.000 0.00 0.00 32.09 3.07
2212 2484 0.103208 GCGTCCTAGACAGACCCATG 59.897 60.000 0.00 0.00 32.09 3.66
2213 2485 0.324368 TGCGTCCTAGACAGACCCAT 60.324 55.000 0.00 0.00 32.09 4.00
2214 2486 0.324368 ATGCGTCCTAGACAGACCCA 60.324 55.000 0.00 0.00 32.09 4.51
2215 2487 0.386113 GATGCGTCCTAGACAGACCC 59.614 60.000 0.00 0.00 32.09 4.46
2216 2488 1.394618 AGATGCGTCCTAGACAGACC 58.605 55.000 1.23 0.00 32.09 3.85
2217 2489 3.377485 TGTTAGATGCGTCCTAGACAGAC 59.623 47.826 1.23 0.00 32.09 3.51
2218 2490 3.617284 TGTTAGATGCGTCCTAGACAGA 58.383 45.455 1.23 0.00 32.09 3.41
2219 2491 4.036852 TCATGTTAGATGCGTCCTAGACAG 59.963 45.833 1.23 0.00 32.09 3.51
2220 2492 3.951680 TCATGTTAGATGCGTCCTAGACA 59.048 43.478 1.23 3.23 32.09 3.41
2221 2493 4.569761 TCATGTTAGATGCGTCCTAGAC 57.430 45.455 1.23 0.00 0.00 2.59
2222 2494 5.126396 CATCATGTTAGATGCGTCCTAGA 57.874 43.478 1.23 0.00 38.98 2.43
2232 2504 8.049117 ACAAACATAGTGGACATCATGTTAGAT 58.951 33.333 12.07 0.00 39.92 1.98
2233 2505 7.334171 CACAAACATAGTGGACATCATGTTAGA 59.666 37.037 12.07 0.00 39.92 2.10
2234 2506 7.466805 CACAAACATAGTGGACATCATGTTAG 58.533 38.462 12.07 5.49 39.92 2.34
2235 2507 7.376435 CACAAACATAGTGGACATCATGTTA 57.624 36.000 12.07 0.00 39.92 2.41
2236 2508 6.258230 CACAAACATAGTGGACATCATGTT 57.742 37.500 0.00 8.01 41.98 2.71
2237 2509 5.885230 CACAAACATAGTGGACATCATGT 57.115 39.130 0.00 0.00 33.43 3.21
2288 2560 5.669164 AAGGTAGCAACAAGGAACAAAAA 57.331 34.783 0.00 0.00 0.00 1.94
2289 2561 6.969993 ATAAGGTAGCAACAAGGAACAAAA 57.030 33.333 0.00 0.00 0.00 2.44
2290 2562 6.969993 AATAAGGTAGCAACAAGGAACAAA 57.030 33.333 0.00 0.00 0.00 2.83
2291 2563 6.322712 ACAAATAAGGTAGCAACAAGGAACAA 59.677 34.615 0.00 0.00 0.00 2.83
2292 2564 5.830991 ACAAATAAGGTAGCAACAAGGAACA 59.169 36.000 0.00 0.00 0.00 3.18
2293 2565 6.149633 CACAAATAAGGTAGCAACAAGGAAC 58.850 40.000 0.00 0.00 0.00 3.62
2294 2566 5.242838 CCACAAATAAGGTAGCAACAAGGAA 59.757 40.000 0.00 0.00 0.00 3.36
2295 2567 4.764823 CCACAAATAAGGTAGCAACAAGGA 59.235 41.667 0.00 0.00 0.00 3.36
2296 2568 4.082245 CCCACAAATAAGGTAGCAACAAGG 60.082 45.833 0.00 0.00 0.00 3.61
2297 2569 4.764823 TCCCACAAATAAGGTAGCAACAAG 59.235 41.667 0.00 0.00 0.00 3.16
2298 2570 4.730966 TCCCACAAATAAGGTAGCAACAA 58.269 39.130 0.00 0.00 0.00 2.83
2299 2571 4.042311 TCTCCCACAAATAAGGTAGCAACA 59.958 41.667 0.00 0.00 0.00 3.33
2300 2572 4.585879 TCTCCCACAAATAAGGTAGCAAC 58.414 43.478 0.00 0.00 0.00 4.17
2301 2573 4.919774 TCTCCCACAAATAAGGTAGCAA 57.080 40.909 0.00 0.00 0.00 3.91
2302 2574 5.450818 AATCTCCCACAAATAAGGTAGCA 57.549 39.130 0.00 0.00 0.00 3.49
2303 2575 6.827727 TCTAATCTCCCACAAATAAGGTAGC 58.172 40.000 0.00 0.00 0.00 3.58
2304 2576 8.432805 ACATCTAATCTCCCACAAATAAGGTAG 58.567 37.037 0.00 0.00 0.00 3.18
2305 2577 8.210946 CACATCTAATCTCCCACAAATAAGGTA 58.789 37.037 0.00 0.00 0.00 3.08
2306 2578 7.056635 CACATCTAATCTCCCACAAATAAGGT 58.943 38.462 0.00 0.00 0.00 3.50
2307 2579 7.227512 GTCACATCTAATCTCCCACAAATAAGG 59.772 40.741 0.00 0.00 0.00 2.69
2308 2580 7.770433 TGTCACATCTAATCTCCCACAAATAAG 59.230 37.037 0.00 0.00 0.00 1.73
2309 2581 7.629157 TGTCACATCTAATCTCCCACAAATAA 58.371 34.615 0.00 0.00 0.00 1.40
2310 2582 7.194112 TGTCACATCTAATCTCCCACAAATA 57.806 36.000 0.00 0.00 0.00 1.40
2311 2583 6.065976 TGTCACATCTAATCTCCCACAAAT 57.934 37.500 0.00 0.00 0.00 2.32
2312 2584 5.497464 TGTCACATCTAATCTCCCACAAA 57.503 39.130 0.00 0.00 0.00 2.83
2313 2585 5.698741 ATGTCACATCTAATCTCCCACAA 57.301 39.130 0.00 0.00 0.00 3.33
2314 2586 5.698741 AATGTCACATCTAATCTCCCACA 57.301 39.130 0.00 0.00 0.00 4.17
2315 2587 8.506168 TTAAAATGTCACATCTAATCTCCCAC 57.494 34.615 0.00 0.00 0.00 4.61
2316 2588 9.527157 TTTTAAAATGTCACATCTAATCTCCCA 57.473 29.630 0.00 0.00 0.00 4.37
2363 2635 9.410556 GCAGAATAATGATGTAACAGTTTGTTT 57.589 29.630 0.00 0.00 41.45 2.83
2364 2636 8.575589 TGCAGAATAATGATGTAACAGTTTGTT 58.424 29.630 0.00 0.00 43.88 2.83
2365 2637 8.109705 TGCAGAATAATGATGTAACAGTTTGT 57.890 30.769 0.00 0.00 0.00 2.83
2366 2638 8.239314 ACTGCAGAATAATGATGTAACAGTTTG 58.761 33.333 23.35 0.00 30.94 2.93
2367 2639 8.340618 ACTGCAGAATAATGATGTAACAGTTT 57.659 30.769 23.35 0.00 30.94 2.66
2368 2640 7.928307 ACTGCAGAATAATGATGTAACAGTT 57.072 32.000 23.35 0.00 30.94 3.16
2369 2641 7.928307 AACTGCAGAATAATGATGTAACAGT 57.072 32.000 23.35 0.00 36.27 3.55
2374 2646 9.836864 AGACATAAACTGCAGAATAATGATGTA 57.163 29.630 23.35 0.00 0.00 2.29
2375 2647 8.618677 CAGACATAAACTGCAGAATAATGATGT 58.381 33.333 23.35 17.42 0.00 3.06
2439 2720 0.842030 AGGAATGTGCCCTGGAGACA 60.842 55.000 0.00 0.00 39.59 3.41
2443 2724 1.383799 CCAAGGAATGTGCCCTGGA 59.616 57.895 0.00 0.00 33.55 3.86
2444 2725 2.353610 GCCAAGGAATGTGCCCTGG 61.354 63.158 0.00 0.00 33.55 4.45
2481 2762 0.250124 CCCCAAAGCTGTACACGTCA 60.250 55.000 0.00 0.00 0.00 4.35
2632 2917 9.303537 GAAATCTTCGATGCTACTAGTACTTTT 57.696 33.333 0.00 0.00 0.00 2.27
2644 2929 8.506168 TTTTATTAGGTGAAATCTTCGATGCT 57.494 30.769 0.00 0.00 0.00 3.79
2680 2965 6.735130 AGGTTAATTTTGGACGAAACTGAAG 58.265 36.000 0.00 0.00 0.00 3.02
2682 2967 7.804843 TTAGGTTAATTTTGGACGAAACTGA 57.195 32.000 0.00 0.00 0.00 3.41
2683 2968 9.124807 GATTTAGGTTAATTTTGGACGAAACTG 57.875 33.333 0.00 0.00 0.00 3.16
2690 2975 9.850628 GTAGTTGGATTTAGGTTAATTTTGGAC 57.149 33.333 0.00 0.00 0.00 4.02
2794 3082 2.922503 TCCGAGGTGAAGCTGCCA 60.923 61.111 0.00 0.00 0.00 4.92
3017 3310 5.048294 ACCGTGAAACAAGAAAATATGGACC 60.048 40.000 0.00 0.00 35.74 4.46
3018 3311 6.009115 ACCGTGAAACAAGAAAATATGGAC 57.991 37.500 0.00 0.00 35.74 4.02
3020 3313 5.118510 GCAACCGTGAAACAAGAAAATATGG 59.881 40.000 0.00 0.00 35.74 2.74
3021 3314 5.920273 AGCAACCGTGAAACAAGAAAATATG 59.080 36.000 0.00 0.00 35.74 1.78
3029 3322 4.287238 AGTTTAGCAACCGTGAAACAAG 57.713 40.909 0.00 0.00 35.74 3.16
3030 3323 4.705337 AAGTTTAGCAACCGTGAAACAA 57.295 36.364 0.00 0.00 35.74 2.83
3037 3330 3.004002 GGCAACTAAAGTTTAGCAACCGT 59.996 43.478 20.31 0.39 35.83 4.83
3073 3366 2.361104 GGGAATTGGACAGGCGCA 60.361 61.111 10.83 0.00 0.00 6.09
3076 3369 1.607801 GCTTGGGGAATTGGACAGGC 61.608 60.000 0.00 0.00 0.00 4.85
3077 3370 0.251742 TGCTTGGGGAATTGGACAGG 60.252 55.000 0.00 0.00 0.00 4.00
3079 3372 1.851304 GATGCTTGGGGAATTGGACA 58.149 50.000 0.00 0.00 0.00 4.02
3082 3375 1.027357 CTCGATGCTTGGGGAATTGG 58.973 55.000 0.00 0.00 0.00 3.16
3083 3376 0.383231 GCTCGATGCTTGGGGAATTG 59.617 55.000 0.00 0.00 38.95 2.32
3104 3397 0.865769 GCCACGTCGTGTTCATTTCT 59.134 50.000 23.01 0.00 0.00 2.52
3122 3415 4.570663 CCCCTCCATCGACGACGC 62.571 72.222 0.00 0.00 39.58 5.19
3132 3425 2.220786 GACCCTCGTACTCCCCTCCA 62.221 65.000 0.00 0.00 0.00 3.86
3143 3436 1.329256 CCATATCCTTCGACCCTCGT 58.671 55.000 0.00 0.00 41.35 4.18
3151 3444 0.837272 ACCCACACCCATATCCTTCG 59.163 55.000 0.00 0.00 0.00 3.79
3174 3467 0.541063 TAGCACCGGTGAAGTCCTCA 60.541 55.000 38.30 9.55 0.00 3.86
3229 3523 4.680237 CGGTCTGCTGGCCGTCAA 62.680 66.667 26.48 0.00 42.73 3.18
3241 3535 3.227276 CGCCTCCTATGCCGGTCT 61.227 66.667 1.90 0.00 0.00 3.85
3275 3569 2.278013 GACGTCGCCTCATCGTCC 60.278 66.667 0.00 0.00 45.08 4.79
3276 3570 2.648102 CGACGTCGCCTCATCGTC 60.648 66.667 26.59 6.83 46.57 4.20
3355 3649 3.289407 TGTCCTCATTGTTGACAACCA 57.711 42.857 15.59 5.16 38.86 3.67
3364 3658 4.218417 CGATTTTCCCTTTGTCCTCATTGT 59.782 41.667 0.00 0.00 0.00 2.71
3370 3664 2.107552 TGGTCGATTTTCCCTTTGTCCT 59.892 45.455 0.00 0.00 0.00 3.85
3375 3669 5.714806 ACATACATTGGTCGATTTTCCCTTT 59.285 36.000 0.00 0.00 0.00 3.11
3414 3708 0.254747 TGGACCGGCTAAATTCCAGG 59.745 55.000 0.00 0.00 33.02 4.45
3419 3713 4.882842 AACAAAATGGACCGGCTAAATT 57.117 36.364 0.00 0.00 0.00 1.82
3466 3760 8.792633 CCACAGAAAAAGACAAATTACATAGGA 58.207 33.333 0.00 0.00 0.00 2.94
3467 3761 8.028938 CCCACAGAAAAAGACAAATTACATAGG 58.971 37.037 0.00 0.00 0.00 2.57
3468 3762 8.028938 CCCCACAGAAAAAGACAAATTACATAG 58.971 37.037 0.00 0.00 0.00 2.23
3469 3763 7.039363 CCCCCACAGAAAAAGACAAATTACATA 60.039 37.037 0.00 0.00 0.00 2.29
3470 3764 6.239572 CCCCCACAGAAAAAGACAAATTACAT 60.240 38.462 0.00 0.00 0.00 2.29
3471 3765 5.069781 CCCCCACAGAAAAAGACAAATTACA 59.930 40.000 0.00 0.00 0.00 2.41
3472 3766 5.538118 CCCCCACAGAAAAAGACAAATTAC 58.462 41.667 0.00 0.00 0.00 1.89
3473 3767 5.799827 CCCCCACAGAAAAAGACAAATTA 57.200 39.130 0.00 0.00 0.00 1.40
3474 3768 4.687901 CCCCCACAGAAAAAGACAAATT 57.312 40.909 0.00 0.00 0.00 1.82
3492 3786 4.772886 ATAGAGATTGTACACAACCCCC 57.227 45.455 0.00 0.00 38.86 5.40
3493 3787 6.481434 AGTATAGAGATTGTACACAACCCC 57.519 41.667 0.00 0.00 38.86 4.95
3494 3788 7.553334 TGAAGTATAGAGATTGTACACAACCC 58.447 38.462 0.00 0.00 38.86 4.11
3518 3812 6.989169 ACTTCTCATCTCCCGATTTTTCTATG 59.011 38.462 0.00 0.00 0.00 2.23
3522 3816 6.372937 AGAAACTTCTCATCTCCCGATTTTTC 59.627 38.462 0.00 0.00 29.94 2.29
3527 3821 5.428184 AAAGAAACTTCTCATCTCCCGAT 57.572 39.130 0.00 0.00 36.28 4.18
3606 4193 7.341805 AGACTTGATAGTATGTTTCAAGCCAT 58.658 34.615 10.84 0.00 46.55 4.40
3607 4194 6.711277 AGACTTGATAGTATGTTTCAAGCCA 58.289 36.000 10.84 0.00 46.55 4.75
3634 4226 5.595952 AGACTTTGTTTGAGAATTCAAGCCT 59.404 36.000 8.44 0.00 43.76 4.58
3638 4230 6.828273 TCTGGAGACTTTGTTTGAGAATTCAA 59.172 34.615 8.44 0.00 41.44 2.69
3646 4238 4.136796 CCATGTCTGGAGACTTTGTTTGA 58.863 43.478 8.24 0.00 46.37 2.69
3647 4239 4.136796 TCCATGTCTGGAGACTTTGTTTG 58.863 43.478 8.24 0.00 46.95 2.93
3648 4240 4.437682 TCCATGTCTGGAGACTTTGTTT 57.562 40.909 8.24 0.00 46.95 2.83
3668 4260 6.447162 CACCAATAAAACCTCAGGAAGTTTC 58.553 40.000 0.00 0.00 35.19 2.78
3669 4261 5.304357 CCACCAATAAAACCTCAGGAAGTTT 59.696 40.000 0.00 0.00 37.80 2.66
3670 4262 4.832823 CCACCAATAAAACCTCAGGAAGTT 59.167 41.667 0.00 0.00 0.00 2.66
3671 4263 4.407365 CCACCAATAAAACCTCAGGAAGT 58.593 43.478 0.00 0.00 0.00 3.01
3672 4264 3.193479 GCCACCAATAAAACCTCAGGAAG 59.807 47.826 0.00 0.00 0.00 3.46
3673 4265 3.161866 GCCACCAATAAAACCTCAGGAA 58.838 45.455 0.00 0.00 0.00 3.36
3674 4266 2.109128 TGCCACCAATAAAACCTCAGGA 59.891 45.455 0.00 0.00 0.00 3.86
3675 4267 2.524306 TGCCACCAATAAAACCTCAGG 58.476 47.619 0.00 0.00 0.00 3.86
3676 4268 3.320541 TGTTGCCACCAATAAAACCTCAG 59.679 43.478 0.00 0.00 32.75 3.35
3677 4269 3.300388 TGTTGCCACCAATAAAACCTCA 58.700 40.909 0.00 0.00 32.75 3.86
3678 4270 4.244862 CATGTTGCCACCAATAAAACCTC 58.755 43.478 0.00 0.00 32.75 3.85
3679 4271 3.007831 CCATGTTGCCACCAATAAAACCT 59.992 43.478 0.00 0.00 32.75 3.50
3680 4272 3.244387 ACCATGTTGCCACCAATAAAACC 60.244 43.478 0.00 0.00 32.75 3.27
3681 4273 4.001618 ACCATGTTGCCACCAATAAAAC 57.998 40.909 0.00 0.00 32.75 2.43
3682 4274 4.835615 AGTACCATGTTGCCACCAATAAAA 59.164 37.500 0.00 0.00 32.75 1.52
3683 4275 4.411927 AGTACCATGTTGCCACCAATAAA 58.588 39.130 0.00 0.00 32.75 1.40
3684 4276 4.013728 GAGTACCATGTTGCCACCAATAA 58.986 43.478 0.00 0.00 32.75 1.40
3685 4277 3.616219 GAGTACCATGTTGCCACCAATA 58.384 45.455 0.00 0.00 32.75 1.90
3686 4278 2.446435 GAGTACCATGTTGCCACCAAT 58.554 47.619 0.00 0.00 32.75 3.16
3687 4279 1.546773 GGAGTACCATGTTGCCACCAA 60.547 52.381 0.00 0.00 35.97 3.67
3688 4280 0.037590 GGAGTACCATGTTGCCACCA 59.962 55.000 0.00 0.00 35.97 4.17
3689 4281 0.679960 GGGAGTACCATGTTGCCACC 60.680 60.000 0.00 0.00 39.85 4.61
3690 4282 0.328258 AGGGAGTACCATGTTGCCAC 59.672 55.000 0.00 0.00 43.89 5.01
3691 4283 0.618458 GAGGGAGTACCATGTTGCCA 59.382 55.000 0.00 0.00 43.89 4.92
3692 4284 0.107165 GGAGGGAGTACCATGTTGCC 60.107 60.000 0.00 0.00 43.89 4.52
3693 4285 0.462047 CGGAGGGAGTACCATGTTGC 60.462 60.000 0.00 0.00 43.89 4.17
3694 4286 0.902531 ACGGAGGGAGTACCATGTTG 59.097 55.000 0.00 0.00 43.89 3.33
3695 4287 1.553704 GAACGGAGGGAGTACCATGTT 59.446 52.381 0.00 0.00 43.89 2.71
3696 4288 1.192428 GAACGGAGGGAGTACCATGT 58.808 55.000 0.00 0.00 43.89 3.21
3697 4289 0.464452 GGAACGGAGGGAGTACCATG 59.536 60.000 0.00 0.00 43.89 3.66
3698 4290 0.338814 AGGAACGGAGGGAGTACCAT 59.661 55.000 0.00 0.00 43.89 3.55
3699 4291 1.002069 TAGGAACGGAGGGAGTACCA 58.998 55.000 0.00 0.00 43.89 3.25
3700 4292 2.149973 TTAGGAACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
3701 4293 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3702 4294 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3703 4295 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3704 4296 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3705 4297 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3706 4298 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3707 4299 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3708 4300 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3724 4316 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
3725 4317 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
3726 4318 7.492994 GGTCCATAGTGAAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 0.00 3.01
3727 4319 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
3728 4320 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
3729 4321 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
3730 4322 6.627287 CGTGGTCCATAGTGAAATCTCTACAA 60.627 42.308 0.00 0.00 0.00 2.41
3731 4323 5.163550 CGTGGTCCATAGTGAAATCTCTACA 60.164 44.000 0.00 0.00 0.00 2.74
3732 4324 5.163540 ACGTGGTCCATAGTGAAATCTCTAC 60.164 44.000 0.00 0.00 0.00 2.59
3733 4325 4.954202 ACGTGGTCCATAGTGAAATCTCTA 59.046 41.667 0.00 0.00 0.00 2.43
3734 4326 3.769844 ACGTGGTCCATAGTGAAATCTCT 59.230 43.478 0.00 0.00 0.00 3.10
3735 4327 4.124851 ACGTGGTCCATAGTGAAATCTC 57.875 45.455 0.00 0.00 0.00 2.75
3736 4328 4.439700 CGTACGTGGTCCATAGTGAAATCT 60.440 45.833 7.22 0.00 0.00 2.40
3737 4329 3.795101 CGTACGTGGTCCATAGTGAAATC 59.205 47.826 7.22 0.00 0.00 2.17
3738 4330 3.429822 CCGTACGTGGTCCATAGTGAAAT 60.430 47.826 15.21 0.00 0.00 2.17
3739 4331 2.094597 CCGTACGTGGTCCATAGTGAAA 60.095 50.000 15.21 0.00 0.00 2.69
3740 4332 1.473677 CCGTACGTGGTCCATAGTGAA 59.526 52.381 15.21 0.00 0.00 3.18
3741 4333 1.097232 CCGTACGTGGTCCATAGTGA 58.903 55.000 15.21 0.00 0.00 3.41
3742 4334 1.097232 TCCGTACGTGGTCCATAGTG 58.903 55.000 15.21 0.00 0.00 2.74
3743 4335 1.679680 CATCCGTACGTGGTCCATAGT 59.320 52.381 15.21 1.21 0.00 2.12
3744 4336 1.679680 ACATCCGTACGTGGTCCATAG 59.320 52.381 15.21 0.00 0.00 2.23
3745 4337 1.766494 ACATCCGTACGTGGTCCATA 58.234 50.000 15.21 0.00 0.00 2.74
3746 4338 1.766494 TACATCCGTACGTGGTCCAT 58.234 50.000 15.21 0.00 0.00 3.41
3747 4339 1.766494 ATACATCCGTACGTGGTCCA 58.234 50.000 15.21 0.00 0.00 4.02
3748 4340 4.937620 TCTATATACATCCGTACGTGGTCC 59.062 45.833 15.21 0.00 0.00 4.46
3749 4341 6.484540 CATCTATATACATCCGTACGTGGTC 58.515 44.000 15.21 0.00 0.00 4.02
3750 4342 5.163683 GCATCTATATACATCCGTACGTGGT 60.164 44.000 15.21 11.27 0.00 4.16
3751 4343 5.163693 TGCATCTATATACATCCGTACGTGG 60.164 44.000 15.21 5.54 0.00 4.94
3752 4344 5.875930 TGCATCTATATACATCCGTACGTG 58.124 41.667 15.21 9.44 0.00 4.49
3753 4345 6.694877 ATGCATCTATATACATCCGTACGT 57.305 37.500 15.21 0.00 0.00 3.57
3754 4346 7.987268 AAATGCATCTATATACATCCGTACG 57.013 36.000 8.69 8.69 0.00 3.67
3757 4349 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
3758 4350 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
3769 4361 9.270640 GAGTGAATCATACTCTAAAATGCATCT 57.729 33.333 0.00 0.00 41.00 2.90
3770 4362 9.049523 TGAGTGAATCATACTCTAAAATGCATC 57.950 33.333 0.00 0.00 43.79 3.91
3771 4363 8.969260 TGAGTGAATCATACTCTAAAATGCAT 57.031 30.769 0.00 0.00 43.79 3.96
3786 4378 6.429692 ACATACGGAACAAAATGAGTGAATCA 59.570 34.615 0.00 0.00 43.70 2.57
3787 4379 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
3788 4380 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
3789 4381 7.731882 TTACATACGGAACAAAATGAGTGAA 57.268 32.000 0.00 0.00 0.00 3.18
3790 4382 7.065324 GGATTACATACGGAACAAAATGAGTGA 59.935 37.037 0.00 0.00 0.00 3.41
3791 4383 7.148323 TGGATTACATACGGAACAAAATGAGTG 60.148 37.037 0.00 0.00 0.00 3.51
3792 4384 6.882140 TGGATTACATACGGAACAAAATGAGT 59.118 34.615 0.00 0.00 0.00 3.41
3793 4385 7.315247 TGGATTACATACGGAACAAAATGAG 57.685 36.000 0.00 0.00 0.00 2.90
3794 4386 7.873719 ATGGATTACATACGGAACAAAATGA 57.126 32.000 0.00 0.00 38.26 2.57
3795 4387 8.836413 ACTATGGATTACATACGGAACAAAATG 58.164 33.333 0.00 0.00 41.03 2.32
3796 4388 8.836413 CACTATGGATTACATACGGAACAAAAT 58.164 33.333 0.00 0.00 41.03 1.82
3797 4389 8.041919 TCACTATGGATTACATACGGAACAAAA 58.958 33.333 0.00 0.00 41.03 2.44
3798 4390 7.557724 TCACTATGGATTACATACGGAACAAA 58.442 34.615 0.00 0.00 41.03 2.83
3799 4391 7.114866 TCACTATGGATTACATACGGAACAA 57.885 36.000 0.00 0.00 41.03 2.83
3800 4392 6.718522 TCACTATGGATTACATACGGAACA 57.281 37.500 0.00 0.00 41.03 3.18
3801 4393 8.603242 ATTTCACTATGGATTACATACGGAAC 57.397 34.615 0.00 0.00 41.03 3.62
3802 4394 8.647796 AGATTTCACTATGGATTACATACGGAA 58.352 33.333 0.00 0.00 41.03 4.30
3803 4395 8.190326 AGATTTCACTATGGATTACATACGGA 57.810 34.615 0.00 0.00 41.03 4.69
3804 4396 8.307483 AGAGATTTCACTATGGATTACATACGG 58.693 37.037 0.00 0.00 41.03 4.02
3805 4397 9.698309 AAGAGATTTCACTATGGATTACATACG 57.302 33.333 0.00 0.00 41.03 3.06
3809 4401 9.958180 TTTGAAGAGATTTCACTATGGATTACA 57.042 29.630 0.00 0.00 0.00 2.41
3812 4404 9.171877 GTCTTTGAAGAGATTTCACTATGGATT 57.828 33.333 0.00 0.00 35.32 3.01
3813 4405 8.547173 AGTCTTTGAAGAGATTTCACTATGGAT 58.453 33.333 0.00 0.00 35.32 3.41
3814 4406 7.911651 AGTCTTTGAAGAGATTTCACTATGGA 58.088 34.615 0.00 0.00 35.32 3.41
3815 4407 8.558973 AAGTCTTTGAAGAGATTTCACTATGG 57.441 34.615 0.00 0.00 35.32 2.74
3821 4413 9.877178 GGAGTATAAGTCTTTGAAGAGATTTCA 57.123 33.333 0.00 0.00 35.32 2.69
3822 4414 9.320352 GGGAGTATAAGTCTTTGAAGAGATTTC 57.680 37.037 0.00 0.00 35.32 2.17
3823 4415 9.052365 AGGGAGTATAAGTCTTTGAAGAGATTT 57.948 33.333 0.00 0.00 35.32 2.17
3824 4416 8.616799 AGGGAGTATAAGTCTTTGAAGAGATT 57.383 34.615 0.00 0.00 35.32 2.40
3825 4417 7.289084 GGAGGGAGTATAAGTCTTTGAAGAGAT 59.711 40.741 0.00 0.00 35.32 2.75
3826 4418 6.608002 GGAGGGAGTATAAGTCTTTGAAGAGA 59.392 42.308 0.00 0.00 35.32 3.10
3827 4419 6.460399 CGGAGGGAGTATAAGTCTTTGAAGAG 60.460 46.154 0.00 0.00 35.32 2.85
3828 4420 5.360144 CGGAGGGAGTATAAGTCTTTGAAGA 59.640 44.000 0.00 0.00 0.00 2.87
3829 4421 5.127356 ACGGAGGGAGTATAAGTCTTTGAAG 59.873 44.000 0.00 0.00 0.00 3.02
3830 4422 5.021458 ACGGAGGGAGTATAAGTCTTTGAA 58.979 41.667 0.00 0.00 0.00 2.69
3831 4423 4.607239 ACGGAGGGAGTATAAGTCTTTGA 58.393 43.478 0.00 0.00 0.00 2.69
3832 4424 5.340439 AACGGAGGGAGTATAAGTCTTTG 57.660 43.478 0.00 0.00 0.00 2.77
3833 4425 5.393896 CGAAACGGAGGGAGTATAAGTCTTT 60.394 44.000 0.00 0.00 0.00 2.52
3834 4426 4.097589 CGAAACGGAGGGAGTATAAGTCTT 59.902 45.833 0.00 0.00 0.00 3.01
3835 4427 3.631227 CGAAACGGAGGGAGTATAAGTCT 59.369 47.826 0.00 0.00 0.00 3.24
3836 4428 3.629398 TCGAAACGGAGGGAGTATAAGTC 59.371 47.826 0.00 0.00 0.00 3.01
3837 4429 3.624777 TCGAAACGGAGGGAGTATAAGT 58.375 45.455 0.00 0.00 0.00 2.24
3838 4430 4.644103 TTCGAAACGGAGGGAGTATAAG 57.356 45.455 0.00 0.00 0.00 1.73
3839 4431 5.603170 ATTTCGAAACGGAGGGAGTATAA 57.397 39.130 13.81 0.00 0.00 0.98
3840 4432 6.906157 ATATTTCGAAACGGAGGGAGTATA 57.094 37.500 13.81 0.00 0.00 1.47
3841 4433 5.803237 ATATTTCGAAACGGAGGGAGTAT 57.197 39.130 13.81 0.98 0.00 2.12
3842 4434 6.322201 ACTTATATTTCGAAACGGAGGGAGTA 59.678 38.462 13.81 0.00 0.00 2.59
3843 4435 5.128335 ACTTATATTTCGAAACGGAGGGAGT 59.872 40.000 13.81 8.22 0.00 3.85
3844 4436 5.598769 ACTTATATTTCGAAACGGAGGGAG 58.401 41.667 13.81 7.63 0.00 4.30
3845 4437 5.361857 AGACTTATATTTCGAAACGGAGGGA 59.638 40.000 13.81 0.00 0.00 4.20
3846 4438 5.598769 AGACTTATATTTCGAAACGGAGGG 58.401 41.667 13.81 5.06 0.00 4.30
3847 4439 7.535489 AAAGACTTATATTTCGAAACGGAGG 57.465 36.000 13.81 6.60 0.00 4.30
3921 4513 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
3922 4514 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
3923 4515 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
3924 4516 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
3925 4517 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
3926 4518 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
3927 4519 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
3928 4520 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3929 4521 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3930 4522 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3931 4523 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3932 4524 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3933 4525 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3934 4526 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3935 4527 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3936 4528 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
3937 4529 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
3938 4530 5.755375 AGATGACTACATACGGAGCAAAATG 59.245 40.000 0.00 0.00 36.82 2.32
3939 4531 5.918608 AGATGACTACATACGGAGCAAAAT 58.081 37.500 0.00 0.00 36.82 1.82
3940 4532 5.339008 AGATGACTACATACGGAGCAAAA 57.661 39.130 0.00 0.00 36.82 2.44
3941 4533 6.650427 ATAGATGACTACATACGGAGCAAA 57.350 37.500 0.00 0.00 36.82 3.68
3942 4534 6.447162 CAATAGATGACTACATACGGAGCAA 58.553 40.000 0.00 0.00 36.82 3.91
3943 4535 5.048013 CCAATAGATGACTACATACGGAGCA 60.048 44.000 0.00 0.00 36.82 4.26
3944 4536 5.183331 TCCAATAGATGACTACATACGGAGC 59.817 44.000 0.00 0.00 36.82 4.70
3945 4537 6.819397 TCCAATAGATGACTACATACGGAG 57.181 41.667 0.00 0.00 36.82 4.63
3946 4538 7.670140 AGATTCCAATAGATGACTACATACGGA 59.330 37.037 0.00 0.00 36.82 4.69
3947 4539 7.831753 AGATTCCAATAGATGACTACATACGG 58.168 38.462 0.00 0.00 36.82 4.02
3948 4540 8.735315 AGAGATTCCAATAGATGACTACATACG 58.265 37.037 0.00 0.00 36.82 3.06
3952 4544 9.868160 TTCTAGAGATTCCAATAGATGACTACA 57.132 33.333 0.00 0.00 0.00 2.74
3955 4547 9.653516 TCTTTCTAGAGATTCCAATAGATGACT 57.346 33.333 0.00 0.00 0.00 3.41
3956 4548 9.691362 GTCTTTCTAGAGATTCCAATAGATGAC 57.309 37.037 0.00 0.00 0.00 3.06
3957 4549 9.653516 AGTCTTTCTAGAGATTCCAATAGATGA 57.346 33.333 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.