>input_sequence_39713
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----------ATGGCATTGCCAACCGCGGTCGTAGCCGGCGTTGCCGCGTCCGTCGCCCTGCTGGTGCTGCTGGCGGTCG
CCGCCGCGCTCTGCTGGTGGCGGCTCGGGGCGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCTCCCACG
CTAGGTACTTACTACTACCTGACACTAGCAAAAAT--TATCCTGCTGCGATTTGTTCTTTTTGTAATTGCCGTGCGTGAT
CGTGATGCACGA-----------------------ATCGTTTGGTCTCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGT
CGGCGCCGGACTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAAC
CTCGTCGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCGCGCCACGGCAAGACTTCGTCGACGAGGTA-----ACCCATCTG-AAACTCTGCTACTTCTTGAACG---------
----------------------------TTTCTGAACT----GCCGGATTTTCGTTTCGACAAGGAAGTAATTGC-CTCT
GTACTGACG-------CGAGAGTTGGTGAAATGTAC-------------TGACTGAATTCGCCTA---------------
----------------TGCTGCAGGTGAGGCGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTCTGCGGCCATCTATACGGTAATTTCC
AGTTGCACAGCTCCATT-CTTGTCGCACAAATTCGAAGCAGCAAACAGCCGAACGCTGATGCGCAGACCCTACATCAATT
TACCAGATACCGGCAAAGAGTCCATGACACGGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCGGCCAAAGGT
GGTAACAGG---GAACTTATTACACAATGCACTCTGCTTGTTTCTGATGGCGTCCGACCAAGTGTCTGAAACAGAGTATC
TGT------------AATGCAGGTCTGGACCATTTGCACAGCCTCGCGCCTCCACTCATCCACAAGGGCTTCAAGACGAG
CAACGTCCTGGTGGATGAGAACTTCATCGCCAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCAGAGGGCTCGAGGACC
CCGCCTCGCCGCTCAACGGATTCCGTTCCAGCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAA-CTCTGAACCCCTTA
CATCATGGGTCTGTCTAGGACGCATCTAACATGATGTCCACTATGTTTGTGGTCTGTTTTTTTTTTTGTCCCAGCTTTTT
TTTTGTTCCTTGTTGCTACCTTATTTGTGGGAGATTAGATGTGACATTTTAAAAAAAACATTTAGATGTGAATTAAACAA
ACTGTTACATCATTATTCTGCAGTTTATGTCTGCTGCG-TCAACCCCGCTCTTATCT--------GACCGTCACGCATGT
GTCTCCAGGGCACATTCCTTGGCACAGCTCTCTGCGAGCAGTGACGTGTACAGCTTTGGGGTTTTTCTTCTGGAGCTCAT
CACCGGCAGGGAGGCCGCCAGCTTGGTTTCTCCAGAATCAACCGAATCTCTCGCTCATTGGGTAATTAA----TCAGTGA
TGCTAATTTTCAGTATATTTGCAGTTTCTTTTACAAAAAAGTACTAGTAGCATCGAAGATTTCACCTAATAAAAGTAATA
TTAGCTTCAGTTTCGTCCAAAATTAACCTAAATCCAAC---TACATTATATTGACGTCAGTTTCCTACTGAATGTGTCAG
CTGGAGGCGTCGGGAGACGAGGTGGCAGACCCGAGGCTCGGTGGCAGCTTCACCTCGGAGGGCATGAAGGAGCTGGTTGG
CCTGACGATGCAGTGCCTGAGCCCGTCGGCGGTGAGGCGGC---CCAAGATGCGGCTGGTTGCGGCGGAGCTCGACCGCA
TCCTAGAGAAGGAGATGACCCTGACGACCGTCATGGGGGACGGCACCGCCATCATCACCCTCGGGAGCCAGCTCTTCACG
TCATGA--------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G454200
GATGAGTAGTCTAGTGTAGTTTAAGTTTGAATTTATGTAAAAACCCTTGAAATTCATCTTGACCTCATTTGGGCTGATGA
CGCGATAATGTACTTG-CACGATACCGGATCCTTCTCTTTTGTAAAGCAAGTATCTTCA----CGACCAACCGAATATAC
ATGCTGGCTGTCACGAGGCTGCCCAATTTGCACTAGTTTATACTAGAAGAAGTATCTGGAAGCAGG----TAGCAAACAC
AAGGCAACCCTGCGCCGCCGCCGTCATGCCACTCCGGCAGGCCGGCCGGCCGCCGCTAGACGCCAAGTGCACGATATAAT
CATGAGACCTCTATCATCATCCTT-------GCTCGGGTCTCCAGCCTATCACAGCCGGGTCAAAGCGCCCTGTGGGCGG
TCCCGGGCCGGCCCCACGTTGACAGCTTG-CCGAAGGTCAGGACAGGCACCGGGCTGGGCCCGCGCACGACCGGGTCCCG
CTCCCAGCTGCCCATGGCAGAATCGCTCGCCCGGTGAAGAAG---AGACGACGACGGCGACCCGTTCGTTCGTTTCACC-
--------GCCCTGGCCGCCGCGGTGAAATGCTTCCTCTCCACGTGCAT-----GCGCGGCATGGCGGACGTCCAAGTTG
CCATGTGC--------ATTCATTTCATATCGCCCACCTG----------------CGTCTTCTTGGCCTGGCTCTGGCCT
AGCTGCTCTGTTCGT----CCTCTGATTGCGCACCAGCTAC----TGGTAGCTAGCCCAATTGCATCCATCCCTCCCATC
GTGCTCTGCTCTTTAAAACACCCAGCCCGGCCGTCGTCCAGCTTCCGTACG---------------------------TT
CCTTGCTCCGATCGG------GCG--------------------------GCTGACCGTGCTCCGTCGCCGCATTGATGA
ATGCCGAAGCTATAGCGGCTCCCCGTCGTCGCTCTTCCCAGGTTAGCGCTCAGCGCAAGCACTGCACCGCCGGGAGCCTC
CGGGGCACGGACTCTCGGCCGGCCGGCGACTGATCCCGTAGTTCTTGGTTTGCGTGCGC-----GCAGGGATGCCACGGT
CGCCCGGATCATGGCATTGCCAACCGCGGTCGTAGCCGGCGTTGCCGCGTCCGTCGCCCTGCTGGTGCTGCTGGCGGTCG
CCGCCGCGCTCTGCTGGTGGCGGCTCGGGGCGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCTCCCACG
CTAGGTACTTACTACTACCTGACACTAGCAAAAAT--TATCCTGCTGCGATTTGTTCTTTTTGTAATTGCCGTGCGTGAT
CGTGATGCACGA-----------------------ATCGTTTGGTCTCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGT
CGGCGCCGGACTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAAC
CTCGTCGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCGCGCCACGGCAAGACTTCGTCGACGAGGTA-----ACCCATCTG-AAACTCTGCTACTTCTTGAACG---------
----------------------------TTTCTGAACT----GCCGGATTTTCGTTTCGACAAGGAAGTAATTGC-CTCT
GTACTGACG-------CGAGAGTTGGTGAAATGTAC-------------TGACTGAATTCGCCTA---------------
----------------TGCTGCAGGTGAGGCGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTCTGCGGCCATCTATACGGTAATTTCC
AGTTGCACAGCTCCATT-CTTGTCGCACAAATTCGAAGCAGCAAACAGCCGAACGCTGATGCGCAGACCCTACATCAATT
TACCAGATACCGGCAAAGAGTCCATGACACGGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCGGCCAAAGGT
GGTAACAGG---GAACTTATTACACAATGCACTCTGCTTGTTTCTGATGGCGTCCGACCAAGTGTCTGAAACAGAGTATC
TGT------------AATGCAGGTCTGGACCATTTGCACAGCCTCGCGCCTCCACTCATCCACAAGGGCTTCAAGACGAG
CAACGTCCTGGTGGATGAGAACTTCATCGCCAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCAGAGGGCTCGAGGACC
CCGCCTCGCCGCTCAACGGATTCCGTTCCAGCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAA-CTCTGAACCCCTTA
CATCATGGGTCTGTCTAGGACGCATCTAACATGATGTCCACTATGTTTGTGGTCTGTTTTTTTTTTTGTCCCAGCTTTTT
TTTTGTTCCTTGTTGCTACCTTATTTGTGGGAGATTAGATGTGACATTTTAAAAAAAACATTTAGATGTGAATTAAACAA
ACTGTTACATCATTATTCTGCAGTTTATGTCTGCTGCG-TCAACCCCGCTCTTATCT--------GACCGTCACGCATGT
GTCTCCAGGGCACATTCCTTGGCACAGCTCTCTGCGAGCAGTGACGTGTACAGCTTTGGGGTTTTTCTTCTGGAGCTCAT
CACCGGCAGGGAGGCCGCCAGCTTGGTTTCTCCAGAATCAACCGAATCTCTCGCTCATTGGGTAATTAA----TCAGTGA
TGCTAATTTTCAGTATATTTGCAGTTTCTTTTACAAAAAAGTACTAGTAGCATCGAAGATTTCACCTAATAAAAGTAATA
TTAGCTTCAGTTTCGTCCAAAATTAACCTAAATCCAAC---TACATTATATTGACGTCAGTTTCCTACTGAATGTGTCAG
CTGGAGGCGTCGGGAGACGAGGTGGCAGACCCGAGGCTCGGTGGCAGCTTCACCTCGGAGGGCATGAAGGAGCTGGTTGG
CCTGACGATGCAGTGCCTGAGCCCGTCGGCGGTGAGGCGGC---CCAAGATGCGGCTGGTTGCGGCGGAGCTCGACCGCA
TCCTAGAGAAGGAGATGACCCTGACGACCGTCATGGGGGACGGCACCGCCATCATCACCCTCGGGAGCCAGCTCTTCACG
TCATGATCATCCGATATTTGTTGC--CACGGTCCATATTTTCTTGTTTCACGGTTGCTAAACTTTAGTTGCCTGAAAATG
AATTGTGCGCCTGTCCAATTCCCCAAGCATCGAGCTAGAAATGAACACGACGTGGCGTCGTCGATGGAGGGGAGTACGAG
GGTCGAAGGATATGGGTGTGGGTATATGAGGACTTCACCGGTGCTAA-AAAAGGGGGAAGGATGGTTAGAGGGATGACCG
GGTTGACGGCCAGCAGACCGGCATAGGAGGCGGTTCAGGCAGGGCGGGGGACGATGAGGCGACGTCGGCTGAAGGTGGCG
GGGTGCCGGCGGTTAGGCCAATGAAGGCGGGCGGCTCGACAATGGAAGTGGTTGTCAACAATGAGGACAAAGGGAAAATC
GACCAATGTATGTACTTTTTTCAGGCACCTGGAATTTAGCCGGTCCATTTTGTTTTGTACATTTGCATATAAAGCAACTT
CCTATGTAATTTGTCTTTTTCTGTGGGGGGTTGTGTACAATCTCTATACTTCATAGAAAAATCGGGAGATGAGAAGTTTC
TTTTTTCTCCCG--------------------------------------------------------------------
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-----------------------------------------------------------------GGGAAGATAACGAAG
TTCCTCTTCCATGGACTCGCAAGGCTAGTTGCATGGCTTGAAACATACTATC-----AAGTCTCCAGGCTTGAATTCTCA
AACAAAGTCTCCAGACATGGAAACTTCCTGAGGTTTTATTGGTGGCAACATGGTACTCCCTCCGTTCCTAAATATAAGTC
TTTGTAGAGATTTCACTATGGACCACGTACGGATGTATATAGATGCATTTTAGAGTATGATTCACTCATTTTGTTCCGTA
TGTAATCCATAGTGAAATCTCTTCAAAGACTTATACTCCCTCCGTTTCGAAATATAAGTCTTTTTAGACATTTTAAATGA
ACTACAACATACAGATGTATGTAGACATATTTTAGAGTATAGATTCACTCATTTTGCTCCGTATGTAGTCATCTATTGGA
ATCTCTAGAAAGACTTATATTTTGAAA
>chr3A_75
--------------------------------------------------------------------------TGATGA
CGCGATTATGTACTTGGCACGATACCGGATCCTTCTCTTTTGTAAAGCAAGTATCTTCACGATCGACCAACCGAATATAC
ATGCTGGCTGTCACGAGACTACCCAATTTGCACTAGTTTA---TAGAAGAAGTATCTGGAAGCAGGCAGCTAGCAACCAC
AAGGCAACCCTGCGCCGCCG---TCATGCCACTCCGGCCGGCC-GCCGGCCGCCGCTAGATGCCAAGTGCACGATATAAT
CATGACATCTCTACAATCATCCTTGCTCGCCGCTCGGGTCTCCAGCCTATGACAGCCGGGTCAAAGCGGCCTGTGGGCGG
TCCCAGGCCGGCCCCACGTTGACAGCTAGCCCAAGGTCCCGGAAT------------------CGCACGACCCGGTCCCG
CTCCCAGCTGCCCATGGCGGAATCGCTCGCCCGGTGCGGTGAAGAAGAAGACGACGACGACCCGTTCGTTCGTTCGTCCG
TTTCA----------CCGCCGCGGTGAAATGCTTGCACTCCACGTGCAT-----GCGCGGCATGGCGGGCGTCCAAGTTG
CCATGTGCTCATCTGCATTCATTTCATATCGTCCACTCCACCACACCACCTGCGTCGTCTTCTTGGCCTGGCTCTAGCCT
AGCTGCTCTGTTCCTCCCTCCTCTGATTGCGCACCAGCTACCTGCTGGTAGCTGCCCCAATTGCATCCATCCCTCCCGTC
CTGCTCTCCTCTTTAAAACACCCAGCCCAGCATAGCCACCATATCTCGCAGCTTGTGGCCGCAGACTCCCTACCATTTTT
GGTCGGTTCGGTCGG------GTTGCTCCAAGAGCAGTCGCGA----------------GCTCCGTCGCCGCATTGATGA
ATGCCGAAGCTATAGCGGCTCTCCGTCGTCGCTCTTCCCAGGTTAGCGCTCAGCGCACGCACT------------GCCCC
CGGGACACGGACTCTCGATCGCCCGGCGACTGATCCCGTAGTTCTTGGTTTGCGTGCG-----TGCAGGGATGCCACGGT
CGCCCGGATCATGCCATTGCCAACCGCGGTCGTAGCCGGCGTTGCCGCCTCCGTCGCCGCGCTGGTGCTGCTGGCGGTCG
CCGCCGCGCTCTGCTGGTGGCGGCTCGGGGCGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCCCCCACG
CTAGGTAAG------TAACTAACACCGGCGAAGGAGCTCGTAGCAAGTCATGCCGCTGCCGGCGTGCTTCATGCGCTGCA
ATTG----------------------ACGTTTTGTATGGTTTGGCCTCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGT
CGGCGCCGGACTACCACGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAAC
CTCGTGGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCGCGCCGCGCCAGGACTTCGTCGACGAGGTACCCGAAACCATCTG-AAACTCTGCTACTTCATGAACGG--------
--------------------TCACTTAGTTTCTGAAGT----GCCAGATTTTCGTTTCAACAAGGAAGTAACTGC-CTCT
GTACTGACG-------TGAGAGTTCGTGAAATGTATTT----------TTGACTGAATTCGCCTGG--------------
-----------------GCTGCAGGTGAGGCGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTCTGCGGCCATCTATACGGTAATTTGC
AGTTGCACAGCTCCATTCCTTGTCAGGCCAATTCCAAGCAGCAAACAGCCGAACGCTAATGCGCAGACCCTACATCTATT
TACCAGATACCGGCAAGGAGTCGATGACAAGGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCGGCCAAAGGT
GGTGGCAACACAAAACTTATTACACAATGCACTGTGCTTGTTTCA----------------------GAAACAGAGTGTC
TGAACTCTGAACTGCAATGCAGGCCTGGACCATCTGCACAGCCTCGCGCCTCCGTTGATCCACAAGGGCTTCAAGACGAG
CAACGTGCTGGTGGACGAGAACTTCATCGCCAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCAGAGGGCTCGAGGACC
CCGGCTCGCCGCTCAACGGATTCCGTTCCGGCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAAACTCTGAACCCTGAA
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----------CATCATTCTGCAGTTTATGTCTGCTGCGATCAACCCCGCTCTTATCT--------GACCGTTACGCATGC
GTCCTCAGGGCACATTCCTTGGCACAGCTCTCTGCGAGCAGCGACGTGTACAGCTTTGGGGTTTTCCTTCTGGAGCTCAT
CACCGGCAGGGAGGCCGCCACCTTGGTTTCTCCGGAATCAACCGAATCTCTCGCTCATTGGGTAATTAACTAGTCAGTGA
TACCAAT-TTCAGTGTATTTTCATTCCGACTAAAAACTAA----------TATCGAAGATTTCTTATGACAAAAGTAATA
TTAGTTGAAGTTTCATCCAAAATTAAGCTAAATCCAGC---TACATTATATTGACACCAGTTTCTTACTGAATGTGTCAG
TTGGAGACGTCGGGAGACGAGGTGGCGGACCCGAGGCTCGGCGGCAGCTTCACCTCGGAGGGCATGAAGGAGCTGGTTGG
CCTGACGATGCAGTGCCTGAGCCCGTCGGCGGTGAGGAGGCGGCCCAAGATGCGGCTGGTCGCGGCGGAGCTCGACCGCA
TCCTGGAGAAGGAGATGACCCTGACGACGGTCATGGGGGATGGCACGGCCATCATCACCCTTGGGAGCCAGCTCTTCACG
TCATGATCATCCAATATTTGTTACCACAAAATGGATATTTTTGTGTTTCGCGATTGCTAAACTTTAGTTGCCTGAAAATC
AATTGAGCATCAATTGAATTCCCCTAGCATCGAGCTGGAAATCAAGACGACGTGACGTCTTCGACGGAGGGGAGTTCAAG
GGTTGACTGATATGGGTGTGG-TAGAGGAGGACTTCACCGGAGCAAAAAA--GGGGGAAGGATGGTTGCAGGGATGACCG
GGGTGACGGCCAATGGACCGGCATAGGAGGCGATTCAGGCAGGGCGGG--ACGATGAGGCGACATAGGCTGAAGGTGGCG
GGTA-CCGGCGGTTAGGCCAATGAAGGCGGGTGGCTCAACAATGGAAGCGTTTGTCAGCAATGGGGATGAAGGGGAAATC
GACCAATGTATGTACTTTTTTCAGGCAACTGGCATTTAGCCGGTCCATTTTGTTTTGTACATTTGCATATAAAGCAACT-
----------------------------GCGTGTGTAATTTCTCTCTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAGATAACGAAG
TTCCTCTTCCATGGACTCGCAAGGCTAATTGCGCAGCTTGAAACATACTATC-----AAGTCT-----------------
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>chr3B_75
--------------------------------------------------------------------------TGATGA
CGCGATAATGTACTTGGTACGATACCGGATCCTTCTCTTTTCTAAAGCAAGTATCTTCACGATCGACAAACCGAATATAC
ATGCTGGCTGTCACGAGGCTACCCAATTTGCACTAGTTTA---TAGAAGAGGTATCTGGAAGCAGGTAGCAAAAG-----
AAGGCAACCCTGCGCCGCCG---TCATGTCACTCCGGCCGGCCGGCCGGCCGCCGCTAGATGCCAAGTGCACGATATAAT
CATGAGATCTCTATCATCATCCTTTCT---CGCTCGGGTCTCCAGCCTATCACAGCCGGGTCAAAGAGCCCTGTGGGCGG
TCCCAGGCC-----CACGTTGACAGCTAGCCCGAAGGTCAGGACAGCCACTGA-----------GCACGACCGGGTCCCG
CTCCCAGCTGCCCATGCCAGAATCGCTCGCCCG-----GTGGAGAAGACGACGACGGCGACCCGTTCGTTCGTTTCACCT
TCTTCACCGCCCTGGCCGCCGCGGTGAAATGCTTCCTCTCCACGTGCATGCGCGGCGCGGCATGGCGGGCGTCCAAGTTG
CCATGTGC--------ATTCATTTCATATCAGCCACCTG----------------CGTCTTCTTGGCCTGGCTCTAGTCT
AGCTGCTCTGTTCCT----CCTCTGATTGCGTACCAGCTA-------GGAGCTAGCCCAATTGCATCCATCCCTCCCGTC
GTGCTCTGCTCTTTAAAACACCCAGCCCGGCCTTCGTCTAGCTTCCGTACG---------------------------TT
TCTTGGTCCGACCAGACCGCCGCTGCTCGACAATTCATCTATCCGGA---GCTGACCGTGCTCCGTCGCCGCATTGATGA
ATGCCGAAGCTATAGCGGCTCTCCGTCGTCGCTCTTGCCAGGTTAGCGCTCAGCGCACGCACAGCACCGCCGGGCGCATC
CGGGGCACGGACTCTCTGCCGGCCGGCGACTGATCCACTAGTTCTTGGTTTGCGTGCGCGCACTGCAGGGATGCCACGGT
CGCCCGGATCATGGCATTGCCAACCGCGGTAGTAGCCGGCGTTGCCGCGTCCGTCGCCACGCTGGTGCTGCTGGCGGTCG
CCGCTGCGGTCTGTTGCTGGTGGCTAGCGGCGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCTCCCACG
CTGGGTAAG------TAACTGACACCAGCAAAGTAGTAGCAATTCGCGCC---------------GCTTCATCCGCTGCA
ATTTTTTGCGCATTTTCCCGTAACTAACGTTTTGTAT-GTTTGGTCCCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGT
CGGCGCCGGACTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAAC
CTCGTCGGCGCCGGCACCTTCGGGAAGGTGTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCCAGCCGCGCCAGGACTTCGTCGACGAGGTACCTACAAACATCTGAAATCTCTGCTAGCTCAGGAACCA--GTGACA
TCCCTGCATTTCCTCATTTCTCATTTAGTTTCTGAAAAACTGGCTAGATTTTCGCCTCGACAAGGAAGTAATTGAACTCT
CTACTTACACCCTTACACGAGACGACGGTTCATGAATTGTCTCTGTACTTGACTGAATTCGCCTCTCACCTCATGGGGGT
TTCATTG------------TGCAGGTAAGGCGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTCTGCGGCCACCTATACGGTAAT--GC
AGTTGCACAGCTCCATTCCTTGTCAGACAAATTCGAAGCAGCAAACAACCCAACGCTAACGCGCCGACGCTGCATCAATT
TACCAGATACCGGCAAAGAGTCCATGACAAGGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCAGCCAAAGGT
ACTGGTAACCCAGAACTTATTACACAATGCACTGTGTTTGTTTCA----------------------GAAACAGAGTGTC
TGAACTCTGAACTTCATTGCAGGTCTGGACCATCTGCACAGCCTCGCGCCTCCCTTGATCCACAAGGGCTTCAAGACGAG
CAACGTCCTGGTGGACGAGAACTTCATCGCCAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCCGAGGGCTCGAGGACC
CCGGCTCGCCGCTGAACGGATTCCGTTCCGGCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAA-CTCTGAACCCTGGA
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----------CATCATTCTGCAGTGAATGTCTGCTGCG-TCAACTCCGCTCTTATCTGACCATCTGACCGTTACGCATGC
GTCCTCAGGGCACATTCCTTGGCACAGCTCTCTGCGAGCAGCGACGTGTACAGCTTTGGGGTTTTTCTTCTGGAGCTCAT
CACCGGCAGGGAGGCTGCAAGCTTGGTTTCTCCGGAATCAACCGAACCTCTCGCTCATTGGGTAATTAT----TCAGTGA
TACCAATCTTCAGTATATTTGCATTTTTTT-------AAAGTACTAGTTGTATCGAAGATTTCTTCTGACAAAAGTAGCA
TTAGTTGAAGTTTCATCCAAAATTAAGCTAAATCCAACTATTACATTATATTGACGCTAGTTTCCTGCTGAATGTGGCAG
CTGGAGTCGTCAGGAGACGAGGTGGCGGACCCGAGGCTCGGCGGCAGCTTCACCTCAGAGGGCATGAAGGAGCTAGTCGG
GCTGACAATGCAGTGCCTGAGCCCGTCGGTGGTGAGGAGGCGGCCCAAGATGCGTCTGGTCGCGGCGGAGCTCGACCGCA
TCCTAGAGAAGGAGATGACACTGACGACCGTCATGGGCGACGGCACCGCCATCATCACCCTCGGGAGCCAGCTCTTCACG
TCATGATCATCCAATATTTGTTGC--CACAATGGACATTTTTGTGTTTCGCGGCTGCTAAACTTTAGTTGCCTGAAAATG
AATTGAGCATCAGTTGAATTCCCCAAACATCGAGCTGGAAATGAAGACGATAT------GGCGACGGAGGGGAGGCCGAG
GTTTGAAGGATATGGGTGTGGGTATAGGAGGACTTCACGAGTGCTAAGAAAATGGGGAATGATGGTTAGAGGGATGATCG
GGGTGACGGCCAGCGGACCGGCATAGGAGGCAGTTAAGGAGGGGCGGG--ACGAGGTGGCCACGCCGGTTGCAGG-----
----------GGTTTGGCCAATAGAGGCGGGCGGCAAAACCATGGAAGCTGTTGTCGGCAATGGGGACGAAGGGGAAATC
GACCGTTGTATGTATTTTTTCCAGGCAACTGACATTTAGCCGGTCCATTTTGTTTTGTACATTTGCATATGAAGCAACT-
----------------------------GGTTGTGTACATTCTATATACTCGATACAAAAGTCGGGAGGTAATGAAGTT-
TTTTTTCTCCCG--------------------------------------------------------------------
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-----------------------------------------------------------------GAGAAGATAACAAAG
TTCCTCTTCCATGGACTCGCAAGGCTAGTTCCGCGGCTTGAAACATACTGTACTATAAAGTCTCCGGGCCTGAATTC---
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>chrUn_661
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------------------------------------------------------------------------------CT
AGCTGCTCTGTTCCT----CCTCTGATTGCGCACCAGCTA-------GTAGCTACCCCAATTGCATCCATCCCTGCCATC
GTGCTCTGCTCTTTAAAACACCCAGCCCAGCCATCGTCTAGATTCGGTGCG---------------------------TT
TCTTGGTTCGATCTG------GCTGCTCGACGAGTGATCCGTCCGGAGCTGCTGACCGAGCGACGTCGCCGCATTGATGA
ATGCCGAAGCTATAGCGGCCCTCCGTCGTCGCTCTTCCTTGGTCAGCAGCTTACCACTC----GCACCGCCGCG------
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-------GCTCTGCTGGTGGCGGCTCAGAGCGCGCCGTAGCCGGACCTCCGACAGCGCCTCCGACGAAACTCCTCCCACG
CTAGGTACG------TACGTGACACTAGCAGCTTCTATGTCCTGCCGCAAGTTCATCCGGTGACCGTCG-----------
-----TGCACGA-----------------------ATGGTTTGGTCTCAGCGGAGTGGGGCAAGTGTGGCCGCACGTCAT
CGGCGCCGGACTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTAAAGCGATGCCAAC
CTCGTCGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCGCGCCGCGCCAAGACTTCGTCGACGAGGTAAGGAAACCCATCTG-AAACTCTGAATATCTGCTAGTTCGTGTGACA
GCGCTGCATTTTGCCA-TTCTCATTTAGTTTCTGAAAACCTCGCTGGATTTTCGTTTCGACAAG----TAATTGC-CTCT
GTACTTACTACTTACTCGAGAGTTGATGAACTTGC------------CTTGACTGAATTCAACTCTCGCTTCATGGGGTC
CCTTGTGCAATGTTGCTGCTGCAGGTGAGGAGGCAGTCGGAGATCTGGCACCGGAACATGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTC-------------------------
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>chr1B_661
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------------------------------------------------------------------------------CT
AGCTGCTCTGTTCCT----CCTCTGATTGCGCACCAGCTA-------GTAGCTACCCCAATTGCATCCATCCCTGCCATC
GTGCTCTGCTCTTTAAAACACCCAGCCCAGCCATCGTCTAGATTCGGTGCG---------------------------TT
TCTTGGTCCGATCTG------GCTGCTCGACGAGTGATCCGTCCGGAGCTGCTGACCGAGCGACGTCGCCGCATTGATGA
ATGCCGAAGCTATAGCGGCCCTCCGTCGTCGCTCTTCCTTGGTCAGCAGCTTACCACTC----GCACCGCCGCG------
--------------------------------------------------------------------------------
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-------GCTCTGCTGGTGGCGGCTCAGAGCGCGCCGTAGCCGGACCTCCGACAGCGCCTCCGACGAAACTCCTCCCACG
CTAGGTACG------TACGTGACACTAGCAGCTTCTATGTCCTGCCGCAAGTTCATCCGGTGACCGTCG-----------
-----TGCACGA-----------------------ATGGTTTGGTCTCAGTGGAGTGGGGCAGGTGTGGCCGCACGTCAT
CGGCGCCGGACTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTAAAGCGATGCCAAC
CTCGTCGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCGCGCCGCGCCAAGACTTCGTCGACGAGGTAAGGAAACCCATCTG-AAACTCTGAATATCTGCTAGTTCGTGTGACA
GCGCTGCATTTTGCCA-TTCTCATTTAGTTTCTGAAAACCTCGCTGGATTTTCGTTTCGACAAG----TAATTGC-CTCT
GTACTTACTACTTACTCGAGAGTTGATGAACTTGC------------CTTGACTGAATTCAACTCTCGCTTCATGGGGTC
CCTTGTGCAATGTTGCTGCTGCAGGTGAGGAGGCAGTCGGAGATCTGGCACCGGAACATGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTC-------------------------
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>chr1B_661
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------------------------------------------------------------------------------CT
AGCTGCTCTGTTCCT----CCTCTGATTGCGCACCAGCTA-------GTAGCTACCCCAATTGCATCCATCCCTGCCATC
GTGCTCTGCTCTTTAAAACACCCAGCCCAGCCATCGTCTAGATTCGGTGCG---------------------------TT
TCTTGGTTCGATCTG------GCTGCTCGACGAGTGATCCGTCCGGAGCTGCTGACCGAGCGACGTCGCCGCATTGATGA
ATGCCGAAGCTATAGCGGCCCTCCGTCGTCGCTCTTCCTTGGTCAGCAGCTTACCACTC----GCACCGCCGCG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GCTCTGCTGGTGGCGGCTCAGAGCGCGCCGTAGCCGGACCTCCGACAGCGCCTCCGACGAAACTCCTCCCACG
CTAGGTACG------TACGTGACACTAGCAGCTTCTATGTCCTGCCGCAAGTTCATCCGGTGACCGTCG-----------
-----TGCACGA-----------------------ATGGTTTGGTCTCAGCGGAGTGGGGCAAGTGTGGCCGCACGTCAT
CGGCGCCGGACTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTAAAGCGATGCCAAC
CTCGTCGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGT
CGGCGCGCCGCGCCAAGACTTCGTCGACGAGGTAAGGAAACCCATCTG-AAACTCTGAATATCTGCTAGTTCGTGTGACA
GCGCTGCATTTTGCCA-TTCTCATTTAGTTTCTGAAAACCTCGCTGGATTTTCGTTTCGACAAG----TAATTGC-CTCT
GTACTTACTACTTACTCGAGAGTTGATGAACTTGC------------CTTGACTGAATTCAACTCTCGCTTCATGGGGTC
CCTTGTGCAATGTTGCTGCTGCAGGTGAGGAGGCAGTCGGAGATCTGGCACCGGAACATGGTGACCCTCATCGGCTACTG
CCAGGACGGGGGTCTGCAGATGCTCGTCTTCGAGCACCTGCCCAACGGCAGCGTC-------------------------
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---------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--------------------------------------------------------------------------------
--------------------S-------------------SSS---------------------------------S---
--------------------SSS---------------S---------------------S-------------------
-------S------------------------------------------------------------------------
----S----------------------S------------------S---S-SSSSSSSSSSS-----------------
------------------------------------SS-SS---------------------------------------
--------------------------------------------------------------------S-----------
-------------------------------S-------------------------------------------S----
-------------S------------------------------------------------------------------
--------------------------------S-----------------------------------------------
S----S-----------------S--------------------------------------------------------
---------------------S-----------------------------------S----------------S-----
--------------------------------------------------------------------------------
----------------------------------------------------------SS--------------------
--------------------------------------------------------------------------------
--------SSSSSSS-----------------SSS---S------S--S----SS--SSS-SSSSS----SSSSSS--SS
SS--S--------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S--S---------------------------------------------------S---------------
------------------------------------S-------------------------------------------
-----------------------------------S----------------------------S---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
------------------------SS-------------------------------S----------------------
-----------------------------S--------------------------------------------------
---SS--SS------------------------S----------SSSSSSSSSSSSSSSSSSSSSSS----------S--
--S------------------------------S-------------------SS-S-----------------------
---------------S----------------------------------------------------------------
---S-------------------------S----------------------------------------------SSS-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S---------------------------------------------------------S-------S
---SS------------------------------------S--------------------------------------
---------------------------------S----------------------------------------------
-S-S---S---------------S---S---S-S--S-----------S-S------------SS--S-S----------
----S-SS------S-----------S-----------------------------S-----------------------
------S-------------------S--------------S--------------------------------------
-------------------------------------S----------------------S-------------------
--------------------------------------------------------------------------------
------------S----------------SS-SS-------SS------S------------------------------
-----S--SS-S--SS--------------------S--------S--------S---------S----------S----
---S----------------------S-----------------------------------------------------
--S-----------S---------------------------------SS------------------------------
--SSS--------------------------------S----------S--------S-----S----S-----S-----
---------------------------S----S----------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----------S---S----S-------S-S-SS-SS--S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------SS-------------------------------S---S-------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_886
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------------------------------------------------------------------AGCTTCCGTACGTT
CCTTGC--------------------------------------------------------------------------
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>reverse_2484
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---CATGGGTCTGTCTAGGACGC---------------------------------------------------------
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>forward_2217
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-------------------------------------TTGTTTCTGATGGCGTCCGA-----------------------
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---------------------------
>reverse_4280
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---------------------------------------TGGTGGCAACATGGTACTCC---------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
