Multiple sequence alignment - TraesCS3D01G448300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G448300 chr3D 100.000 3512 0 0 1 3512 556855527 556852016 0.000000e+00 6486.0
1 TraesCS3D01G448300 chr3D 82.259 1133 174 14 1476 2601 556622567 556621455 0.000000e+00 953.0
2 TraesCS3D01G448300 chr3D 81.220 623 100 11 1 607 556626654 556626033 1.470000e-133 486.0
3 TraesCS3D01G448300 chr3D 77.684 354 59 13 243 587 557481938 557482280 7.690000e-47 198.0
4 TraesCS3D01G448300 chr3B 92.194 2639 176 12 1 2619 739328003 739325375 0.000000e+00 3705.0
5 TraesCS3D01G448300 chr3B 95.699 279 11 1 2889 3167 739324891 739324614 6.920000e-122 448.0
6 TraesCS3D01G448300 chr3B 88.306 248 17 5 2629 2866 739325327 739325082 1.600000e-73 287.0
7 TraesCS3D01G448300 chr3B 84.615 182 28 0 399 580 739542973 739543154 7.740000e-42 182.0
8 TraesCS3D01G448300 chr3B 75.281 356 69 13 243 587 739517501 739517848 6.070000e-33 152.0
9 TraesCS3D01G448300 chr3B 98.649 74 1 0 3168 3241 739324364 739324291 7.910000e-27 132.0
10 TraesCS3D01G448300 chr2B 88.696 115 10 2 2633 2745 800067180 800067293 1.700000e-28 137.0
11 TraesCS3D01G448300 chr5D 93.902 82 4 1 2664 2744 462454719 462454800 4.760000e-24 122.0
12 TraesCS3D01G448300 chr5D 100.000 28 0 0 2632 2659 355464088 355464061 6.000000e-03 52.8
13 TraesCS3D01G448300 chr5A 86.207 116 9 5 2629 2740 592618886 592618774 6.160000e-23 119.0
14 TraesCS3D01G448300 chr7D 90.110 91 7 2 2666 2755 585665934 585666023 2.210000e-22 117.0
15 TraesCS3D01G448300 chr5B 89.011 91 9 1 2664 2754 447221367 447221456 1.030000e-20 111.0
16 TraesCS3D01G448300 chr5B 82.482 137 15 4 2629 2758 690707275 690707409 1.030000e-20 111.0
17 TraesCS3D01G448300 chr5B 82.906 117 15 2 2633 2745 391456700 391456585 2.230000e-17 100.0
18 TraesCS3D01G448300 chr7B 86.869 99 11 2 2659 2755 656285584 656285682 3.710000e-20 110.0
19 TraesCS3D01G448300 chr7A 81.746 126 13 6 2629 2744 603036758 603036633 2.890000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G448300 chr3D 556852016 556855527 3511 True 6486.0 6486 100.0000 1 3512 1 chr3D.!!$R1 3511
1 TraesCS3D01G448300 chr3D 556621455 556626654 5199 True 719.5 953 81.7395 1 2601 2 chr3D.!!$R2 2600
2 TraesCS3D01G448300 chr3B 739324291 739328003 3712 True 1143.0 3705 93.7120 1 3241 4 chr3B.!!$R1 3240

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 628 0.178864 TCGATGGGATGGGATGGGAT 60.179 55.0 0.0 0.0 0.0 3.85 F
1944 4631 0.038892 TCGGTTCCTTCGTACAGCAC 60.039 55.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 5134 0.247736 AATCTCGCGCTTCAGTTCCT 59.752 50.0 5.56 0.00 0.0 3.36 R
3301 6466 0.029834 GCCAGTCTGTGCAAAGTGTG 59.970 55.0 3.21 2.65 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.823610 GTACTCGCCTACCACTTTCCT 59.176 52.381 0.00 0.00 0.00 3.36
79 80 1.573108 TTCCTGGCGATCTCCTTCTT 58.427 50.000 2.88 0.00 0.00 2.52
80 81 1.573108 TCCTGGCGATCTCCTTCTTT 58.427 50.000 2.88 0.00 0.00 2.52
86 87 1.565305 CGATCTCCTTCTTTGGCTCG 58.435 55.000 0.00 0.00 0.00 5.03
100 101 1.066215 TGGCTCGTAGTAGGTGTCGTA 60.066 52.381 0.00 0.00 0.00 3.43
110 120 2.508663 GTGTCGTAGCGGCCTTCC 60.509 66.667 0.00 0.00 0.00 3.46
166 176 2.584391 GGTGGGAGAGAAGCGTGGT 61.584 63.158 0.00 0.00 0.00 4.16
189 199 2.147387 ACGCTTTGGTCCTGGTCCT 61.147 57.895 11.28 0.00 0.00 3.85
380 393 0.991920 CCTCTCCCCAGCTTTGGTAA 59.008 55.000 0.00 0.00 0.00 2.85
384 397 2.039879 TCTCCCCAGCTTTGGTAAAGTC 59.960 50.000 3.56 0.00 40.64 3.01
395 411 3.581024 TGGTAAAGTCGTTCTATGCGT 57.419 42.857 0.00 0.00 0.00 5.24
413 429 2.312436 TTCGACGTGCGTCTCGAGA 61.312 57.895 12.08 12.08 42.54 4.04
609 625 1.059098 TTCTCGATGGGATGGGATGG 58.941 55.000 0.00 0.00 0.00 3.51
610 626 0.837691 TCTCGATGGGATGGGATGGG 60.838 60.000 0.00 0.00 0.00 4.00
611 627 0.837691 CTCGATGGGATGGGATGGGA 60.838 60.000 0.00 0.00 0.00 4.37
612 628 0.178864 TCGATGGGATGGGATGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
613 629 1.080329 TCGATGGGATGGGATGGGATA 59.920 52.381 0.00 0.00 0.00 2.59
748 3304 7.321908 GGTTATAAACCGATCTCTAATCCTCC 58.678 42.308 0.00 0.00 42.62 4.30
909 3518 0.394192 TGCTTGGCCATATCCTCTCG 59.606 55.000 6.09 0.00 0.00 4.04
1010 3619 1.227764 CCCTGGACATGGATGAGCG 60.228 63.158 0.00 0.00 0.00 5.03
1019 3628 2.435938 GGATGAGCGGCCGAAACA 60.436 61.111 33.48 24.24 0.00 2.83
1052 3661 1.004560 ACGAGGTGGACGACGACTA 60.005 57.895 0.00 0.00 34.70 2.59
1053 3662 0.392193 ACGAGGTGGACGACGACTAT 60.392 55.000 0.00 0.00 34.70 2.12
1056 3665 2.096367 CGAGGTGGACGACGACTATATG 60.096 54.545 0.00 0.00 0.00 1.78
1206 3824 3.254960 CCTGGGAGTGAGATTGGGATAT 58.745 50.000 0.00 0.00 0.00 1.63
1210 3828 4.915809 TGGGAGTGAGATTGGGATATGATT 59.084 41.667 0.00 0.00 0.00 2.57
1308 3935 3.470888 CTCGGCCGAGACCCCATT 61.471 66.667 45.28 0.00 44.53 3.16
1323 3950 1.664873 CATTTGCAAGCACCCCGAA 59.335 52.632 0.00 0.00 0.00 4.30
1362 3989 3.734735 GGCGATATGAGGTTAAAGACGTC 59.265 47.826 7.70 7.70 42.17 4.34
1366 3993 2.450609 TGAGGTTAAAGACGTCAGCC 57.549 50.000 19.50 8.75 45.40 4.85
1406 4033 2.660206 CGACGACCATTCACCCCA 59.340 61.111 0.00 0.00 0.00 4.96
1422 4049 0.460109 CCCATGCGACAGATGACGAA 60.460 55.000 8.80 0.00 35.37 3.85
1446 4091 2.456119 CGACGATGTTGGCTCCAGC 61.456 63.158 0.00 0.00 41.14 4.85
1448 4093 1.364626 GACGATGTTGGCTCCAGCTG 61.365 60.000 6.78 6.78 41.70 4.24
1487 4174 4.315588 CGGAGAGTACACCGTCCT 57.684 61.111 14.81 0.00 43.28 3.85
1488 4175 1.801332 CGGAGAGTACACCGTCCTG 59.199 63.158 14.81 0.00 43.28 3.86
1635 4322 0.321564 AGCACGTGCAAAGGCTCATA 60.322 50.000 39.21 0.00 45.16 2.15
1756 4443 1.001378 GGTGCTGCCATAAATTAGCCG 60.001 52.381 0.00 0.00 35.36 5.52
1834 4521 1.200948 GCAACTCCTTTCTCACCATGC 59.799 52.381 0.00 0.00 0.00 4.06
1882 4569 1.079819 AAGGTCGACATCTGTGCGG 60.080 57.895 18.91 0.00 0.00 5.69
1922 4609 0.894141 TCAGAAGAGGAGCTCAGCAC 59.106 55.000 17.19 0.00 32.06 4.40
1944 4631 0.038892 TCGGTTCCTTCGTACAGCAC 60.039 55.000 0.00 0.00 0.00 4.40
1956 4643 0.664224 TACAGCACTTCGTGTCGACA 59.336 50.000 15.76 15.76 34.89 4.35
1977 4664 3.329929 ACGAAACACCTCCACTTATCC 57.670 47.619 0.00 0.00 0.00 2.59
1986 4673 0.618458 TCCACTTATCCTGCGCCTTT 59.382 50.000 4.18 0.00 0.00 3.11
2004 4691 0.107263 TTATGGGCTCATGCTTCGCA 60.107 50.000 10.07 0.00 44.86 5.10
2007 4694 3.121030 GGCTCATGCTTCGCACGT 61.121 61.111 0.00 0.00 43.04 4.49
2013 4700 2.942796 ATGCTTCGCACGTCTCCCA 61.943 57.895 0.00 0.00 43.04 4.37
2058 4745 2.094757 AACTGATCGGACACGTGCCA 62.095 55.000 17.22 9.12 41.85 4.92
2112 4799 2.253392 CGACAAGCAAAATCCTCTGC 57.747 50.000 0.00 0.00 38.91 4.26
2118 4805 0.604578 GCAAAATCCTCTGCCAAGCA 59.395 50.000 0.00 0.00 36.92 3.91
2128 4815 4.043200 GCCAAGCACCGAACCTGC 62.043 66.667 0.00 0.00 34.63 4.85
2145 4832 3.125316 CCTGCAAACATTGTCCTTGTTG 58.875 45.455 3.80 0.00 37.38 3.33
2184 4871 3.433173 GCAATCCCAATAAGTACGACCCT 60.433 47.826 0.00 0.00 0.00 4.34
2185 4872 4.127171 CAATCCCAATAAGTACGACCCTG 58.873 47.826 0.00 0.00 0.00 4.45
2187 4874 3.649843 TCCCAATAAGTACGACCCTGAT 58.350 45.455 0.00 0.00 0.00 2.90
2201 4888 2.093288 ACCCTGATGAGTACGACTACGA 60.093 50.000 0.00 0.00 42.66 3.43
2276 4963 3.677648 CACCCTCGACGTTCCGGT 61.678 66.667 0.00 0.00 0.00 5.28
2316 5003 2.680352 TGCCTCAGGAGTCGGGTC 60.680 66.667 0.00 0.00 0.00 4.46
2346 5033 2.627699 CAACCTGTTGCATTACCAAGGT 59.372 45.455 0.00 0.00 33.45 3.50
2352 5039 2.214376 TGCATTACCAAGGTGGAAGG 57.786 50.000 1.07 0.00 40.96 3.46
2363 5050 3.706373 TGGAAGGGCGCAGAGGAC 61.706 66.667 10.83 0.00 0.00 3.85
2447 5134 0.608035 GGGCCGTTGTGGATTCAGAA 60.608 55.000 0.00 0.00 42.00 3.02
2466 5153 0.247736 AGGAACTGAAGCGCGAGATT 59.752 50.000 12.10 0.00 45.87 2.40
2478 5165 1.089481 GCGAGATTGAACGATGGGCA 61.089 55.000 0.00 0.00 0.00 5.36
2493 5180 1.228657 GGGCAGTGAACGAGACAACC 61.229 60.000 0.00 0.00 0.00 3.77
2512 5199 0.868406 CAGCAAGGAGTTCCGTTGAC 59.132 55.000 11.87 6.00 42.08 3.18
2544 5238 0.894141 TGCCTTTGCAATTGCGGTAT 59.106 45.000 24.58 0.00 46.66 2.73
2609 5303 8.680903 ACAATATTCTCTAAACATTTGGCTCAG 58.319 33.333 0.00 0.00 0.00 3.35
2622 5348 1.899814 TGGCTCAGTCGACTTAACCAT 59.100 47.619 17.26 0.00 0.00 3.55
2631 5362 6.071560 TCAGTCGACTTAACCATGTCTTATGT 60.072 38.462 17.26 0.00 0.00 2.29
2664 5395 6.867550 TGAGATCTTACATTGAGATTCGTGT 58.132 36.000 0.00 0.00 34.13 4.49
2665 5396 7.323420 TGAGATCTTACATTGAGATTCGTGTT 58.677 34.615 0.00 0.00 34.13 3.32
2700 5440 5.409520 TCTCTTGCATGTTATGTCACTTGAC 59.590 40.000 2.19 2.19 44.97 3.18
2703 5443 4.640364 TGCATGTTATGTCACTTGACTGA 58.360 39.130 10.63 0.00 44.99 3.41
2710 5450 3.459232 TGTCACTTGACTGAGACTTGG 57.541 47.619 10.63 0.00 44.99 3.61
2721 5461 7.009179 TGACTGAGACTTGGTTAAATCTCAT 57.991 36.000 3.43 0.00 44.89 2.90
2737 5477 2.946329 TCTCATTCGACTGAGACCTAGC 59.054 50.000 26.33 0.00 45.13 3.42
2786 5526 9.256228 TCTAGAATGTCTACAGGAATTACAGTT 57.744 33.333 0.00 0.00 0.00 3.16
2846 5587 3.103213 GCCCCTGCCCCCATCTAA 61.103 66.667 0.00 0.00 0.00 2.10
2887 5628 7.750947 ATCTAAGGAGTACATGTTAGGGTTT 57.249 36.000 2.30 0.00 0.00 3.27
2901 5817 5.591067 TGTTAGGGTTTCGATTTGACAGTTT 59.409 36.000 0.00 0.00 0.00 2.66
2913 5829 1.962807 TGACAGTTTCAAATGCCCCAG 59.037 47.619 0.00 0.00 0.00 4.45
2950 5866 5.880887 AGCAAGGCCAGTAGTATAAAACTTC 59.119 40.000 5.01 0.00 39.80 3.01
3009 5925 2.891580 ACGTTCAAGTCCTTCTGCTCTA 59.108 45.455 0.00 0.00 0.00 2.43
3037 5953 3.894427 TGGCTGTTTGTTGTTGGATATGT 59.106 39.130 0.00 0.00 0.00 2.29
3083 5999 3.914312 ACGTCCTCAGTAGTGAATTGTG 58.086 45.455 1.11 0.00 30.14 3.33
3087 6003 2.290260 CCTCAGTAGTGAATTGTGGGCA 60.290 50.000 1.11 0.00 30.14 5.36
3195 6360 8.827177 ATTCCTGCTGCATATTAATTTGAATG 57.173 30.769 1.31 1.39 0.00 2.67
3257 6422 9.973450 ACATACATACTCTGTTAATCATCTGTC 57.027 33.333 0.00 0.00 39.39 3.51
3258 6423 9.971922 CATACATACTCTGTTAATCATCTGTCA 57.028 33.333 0.00 0.00 39.39 3.58
3259 6424 9.973450 ATACATACTCTGTTAATCATCTGTCAC 57.027 33.333 0.00 0.00 39.39 3.67
3260 6425 7.840931 ACATACTCTGTTAATCATCTGTCACA 58.159 34.615 0.00 0.00 32.90 3.58
3261 6426 8.481314 ACATACTCTGTTAATCATCTGTCACAT 58.519 33.333 0.00 0.00 32.90 3.21
3262 6427 8.976471 CATACTCTGTTAATCATCTGTCACATC 58.024 37.037 0.00 0.00 0.00 3.06
3263 6428 6.939622 ACTCTGTTAATCATCTGTCACATCA 58.060 36.000 0.00 0.00 0.00 3.07
3264 6429 7.389232 ACTCTGTTAATCATCTGTCACATCAA 58.611 34.615 0.00 0.00 0.00 2.57
3265 6430 7.879677 ACTCTGTTAATCATCTGTCACATCAAA 59.120 33.333 0.00 0.00 0.00 2.69
3266 6431 8.620116 TCTGTTAATCATCTGTCACATCAAAA 57.380 30.769 0.00 0.00 0.00 2.44
3267 6432 9.065798 TCTGTTAATCATCTGTCACATCAAAAA 57.934 29.630 0.00 0.00 0.00 1.94
3292 6457 7.907214 AAAATACATCACTACACTTGTCTCC 57.093 36.000 0.00 0.00 0.00 3.71
3293 6458 3.963428 ACATCACTACACTTGTCTCCC 57.037 47.619 0.00 0.00 0.00 4.30
3294 6459 3.511477 ACATCACTACACTTGTCTCCCT 58.489 45.455 0.00 0.00 0.00 4.20
3295 6460 3.259374 ACATCACTACACTTGTCTCCCTG 59.741 47.826 0.00 0.00 0.00 4.45
3296 6461 1.618837 TCACTACACTTGTCTCCCTGC 59.381 52.381 0.00 0.00 0.00 4.85
3297 6462 1.344438 CACTACACTTGTCTCCCTGCA 59.656 52.381 0.00 0.00 0.00 4.41
3298 6463 1.620819 ACTACACTTGTCTCCCTGCAG 59.379 52.381 6.78 6.78 0.00 4.41
3299 6464 0.321671 TACACTTGTCTCCCTGCAGC 59.678 55.000 8.66 0.00 0.00 5.25
3300 6465 1.673665 CACTTGTCTCCCTGCAGCC 60.674 63.158 8.66 0.00 0.00 4.85
3301 6466 2.045536 CTTGTCTCCCTGCAGCCC 60.046 66.667 8.66 0.00 0.00 5.19
3302 6467 2.853542 TTGTCTCCCTGCAGCCCA 60.854 61.111 8.66 0.00 0.00 5.36
3303 6468 3.196207 TTGTCTCCCTGCAGCCCAC 62.196 63.158 8.66 2.26 0.00 4.61
3304 6469 3.640407 GTCTCCCTGCAGCCCACA 61.640 66.667 8.66 0.00 0.00 4.17
3305 6470 3.640407 TCTCCCTGCAGCCCACAC 61.640 66.667 8.66 0.00 0.00 3.82
3306 6471 3.644606 CTCCCTGCAGCCCACACT 61.645 66.667 8.66 0.00 0.00 3.55
3307 6472 3.177884 TCCCTGCAGCCCACACTT 61.178 61.111 8.66 0.00 0.00 3.16
3308 6473 2.203538 CCCTGCAGCCCACACTTT 60.204 61.111 8.66 0.00 0.00 2.66
3309 6474 2.567497 CCCTGCAGCCCACACTTTG 61.567 63.158 8.66 0.00 0.00 2.77
3310 6475 2.337532 CTGCAGCCCACACTTTGC 59.662 61.111 0.00 0.00 37.09 3.68
3311 6476 2.441717 TGCAGCCCACACTTTGCA 60.442 55.556 0.00 0.00 43.62 4.08
3312 6477 2.028043 GCAGCCCACACTTTGCAC 59.972 61.111 0.00 0.00 36.59 4.57
3313 6478 2.784356 GCAGCCCACACTTTGCACA 61.784 57.895 0.00 0.00 36.59 4.57
3314 6479 1.361271 CAGCCCACACTTTGCACAG 59.639 57.895 0.00 0.00 0.00 3.66
3315 6480 1.102809 CAGCCCACACTTTGCACAGA 61.103 55.000 6.92 0.00 0.00 3.41
3316 6481 1.103398 AGCCCACACTTTGCACAGAC 61.103 55.000 6.92 0.00 0.00 3.51
3317 6482 1.103398 GCCCACACTTTGCACAGACT 61.103 55.000 6.92 0.00 0.00 3.24
3318 6483 0.664761 CCCACACTTTGCACAGACTG 59.335 55.000 6.92 0.00 0.00 3.51
3319 6484 0.664761 CCACACTTTGCACAGACTGG 59.335 55.000 6.92 6.53 0.00 4.00
3320 6485 0.029834 CACACTTTGCACAGACTGGC 59.970 55.000 6.92 8.09 0.00 4.85
3321 6486 0.107017 ACACTTTGCACAGACTGGCT 60.107 50.000 6.92 0.00 0.00 4.75
3330 6495 2.649831 CAGACTGGCTGCATTTGGT 58.350 52.632 0.00 0.00 37.90 3.67
3331 6496 0.963962 CAGACTGGCTGCATTTGGTT 59.036 50.000 0.00 0.00 37.90 3.67
3332 6497 0.963962 AGACTGGCTGCATTTGGTTG 59.036 50.000 0.50 0.00 0.00 3.77
3333 6498 0.668401 GACTGGCTGCATTTGGTTGC 60.668 55.000 0.50 0.00 43.07 4.17
3334 6499 1.117142 ACTGGCTGCATTTGGTTGCT 61.117 50.000 0.50 0.00 43.18 3.91
3335 6500 0.034337 CTGGCTGCATTTGGTTGCTT 59.966 50.000 0.50 0.00 43.18 3.91
3336 6501 1.273048 CTGGCTGCATTTGGTTGCTTA 59.727 47.619 0.50 0.00 43.18 3.09
3337 6502 1.690893 TGGCTGCATTTGGTTGCTTAA 59.309 42.857 0.50 0.00 43.18 1.85
3338 6503 2.288948 TGGCTGCATTTGGTTGCTTAAG 60.289 45.455 0.50 0.00 43.18 1.85
3339 6504 2.029110 GGCTGCATTTGGTTGCTTAAGA 60.029 45.455 6.67 0.00 43.18 2.10
3340 6505 3.248266 GCTGCATTTGGTTGCTTAAGAG 58.752 45.455 6.67 0.00 43.18 2.85
3341 6506 3.841643 CTGCATTTGGTTGCTTAAGAGG 58.158 45.455 6.67 0.00 43.18 3.69
3342 6507 2.562298 TGCATTTGGTTGCTTAAGAGGG 59.438 45.455 6.67 0.00 43.18 4.30
3343 6508 2.675032 GCATTTGGTTGCTTAAGAGGGC 60.675 50.000 6.67 0.00 39.57 5.19
3344 6509 2.373335 TTTGGTTGCTTAAGAGGGCA 57.627 45.000 6.67 0.00 36.62 5.36
3345 6510 2.603075 TTGGTTGCTTAAGAGGGCAT 57.397 45.000 6.67 0.00 38.30 4.40
3346 6511 2.128771 TGGTTGCTTAAGAGGGCATC 57.871 50.000 6.67 0.00 38.30 3.91
3347 6512 1.635487 TGGTTGCTTAAGAGGGCATCT 59.365 47.619 6.67 0.00 41.27 2.90
3348 6513 2.843730 TGGTTGCTTAAGAGGGCATCTA 59.156 45.455 6.67 0.00 37.23 1.98
3349 6514 3.265737 TGGTTGCTTAAGAGGGCATCTAA 59.734 43.478 6.67 0.00 37.23 2.10
3350 6515 3.879892 GGTTGCTTAAGAGGGCATCTAAG 59.120 47.826 6.67 7.89 37.23 2.18
3351 6516 3.199880 TGCTTAAGAGGGCATCTAAGC 57.800 47.619 23.76 23.76 40.86 3.09
3362 6527 3.615849 GCATCTAAGCCATGTTGCTAC 57.384 47.619 0.00 0.00 41.80 3.58
3363 6528 3.209410 GCATCTAAGCCATGTTGCTACT 58.791 45.455 0.00 0.00 41.80 2.57
3364 6529 3.249559 GCATCTAAGCCATGTTGCTACTC 59.750 47.826 0.00 0.00 41.80 2.59
3365 6530 4.445453 CATCTAAGCCATGTTGCTACTCA 58.555 43.478 0.00 0.00 41.80 3.41
3366 6531 3.861840 TCTAAGCCATGTTGCTACTCAC 58.138 45.455 0.00 0.00 41.80 3.51
3367 6532 2.566833 AAGCCATGTTGCTACTCACA 57.433 45.000 0.00 0.00 41.80 3.58
3368 6533 2.795231 AGCCATGTTGCTACTCACAT 57.205 45.000 0.00 0.00 40.56 3.21
3369 6534 2.362736 AGCCATGTTGCTACTCACATG 58.637 47.619 5.47 5.47 40.56 3.21
3370 6535 2.026915 AGCCATGTTGCTACTCACATGA 60.027 45.455 12.77 0.00 41.58 3.07
3371 6536 2.749076 GCCATGTTGCTACTCACATGAA 59.251 45.455 12.77 0.00 41.58 2.57
3372 6537 3.191162 GCCATGTTGCTACTCACATGAAA 59.809 43.478 12.77 0.00 41.58 2.69
3373 6538 4.321156 GCCATGTTGCTACTCACATGAAAA 60.321 41.667 12.77 0.00 41.58 2.29
3374 6539 5.771469 CCATGTTGCTACTCACATGAAAAA 58.229 37.500 12.77 0.00 41.58 1.94
3390 6555 2.430248 AAAAACTCAACCCGACCAGT 57.570 45.000 0.00 0.00 0.00 4.00
3391 6556 1.675552 AAAACTCAACCCGACCAGTG 58.324 50.000 0.00 0.00 0.00 3.66
3392 6557 0.544697 AAACTCAACCCGACCAGTGT 59.455 50.000 0.00 0.00 0.00 3.55
3393 6558 0.179056 AACTCAACCCGACCAGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3394 6559 1.335132 ACTCAACCCGACCAGTGTGT 61.335 55.000 0.00 0.00 0.00 3.72
3395 6560 0.677288 CTCAACCCGACCAGTGTGTA 59.323 55.000 0.00 0.00 0.00 2.90
3396 6561 0.390124 TCAACCCGACCAGTGTGTAC 59.610 55.000 0.00 0.00 0.00 2.90
3397 6562 0.601841 CAACCCGACCAGTGTGTACC 60.602 60.000 0.00 0.00 0.00 3.34
3398 6563 1.049855 AACCCGACCAGTGTGTACCA 61.050 55.000 0.00 0.00 0.00 3.25
3399 6564 1.049855 ACCCGACCAGTGTGTACCAA 61.050 55.000 0.00 0.00 0.00 3.67
3400 6565 0.320421 CCCGACCAGTGTGTACCAAG 60.320 60.000 0.00 0.00 0.00 3.61
3401 6566 0.320421 CCGACCAGTGTGTACCAAGG 60.320 60.000 0.00 0.00 0.00 3.61
3402 6567 0.391597 CGACCAGTGTGTACCAAGGT 59.608 55.000 0.00 0.00 36.67 3.50
3403 6568 1.614903 CGACCAGTGTGTACCAAGGTA 59.385 52.381 0.00 0.00 34.74 3.08
3404 6569 2.352421 CGACCAGTGTGTACCAAGGTAG 60.352 54.545 0.00 6.43 34.74 3.18
3405 6570 2.895404 GACCAGTGTGTACCAAGGTAGA 59.105 50.000 0.00 0.00 34.74 2.59
3406 6571 3.311091 ACCAGTGTGTACCAAGGTAGAA 58.689 45.455 0.00 0.00 33.30 2.10
3407 6572 3.712733 ACCAGTGTGTACCAAGGTAGAAA 59.287 43.478 0.00 0.00 33.30 2.52
3408 6573 4.062991 CCAGTGTGTACCAAGGTAGAAAC 58.937 47.826 8.32 8.32 33.72 2.78
3409 6574 4.443739 CCAGTGTGTACCAAGGTAGAAACA 60.444 45.833 16.42 10.87 35.35 2.83
3410 6575 4.750098 CAGTGTGTACCAAGGTAGAAACAG 59.250 45.833 16.42 7.02 35.35 3.16
3411 6576 4.652421 AGTGTGTACCAAGGTAGAAACAGA 59.348 41.667 16.42 3.19 35.35 3.41
3412 6577 5.129815 AGTGTGTACCAAGGTAGAAACAGAA 59.870 40.000 16.42 0.00 35.35 3.02
3413 6578 5.818857 GTGTGTACCAAGGTAGAAACAGAAA 59.181 40.000 10.87 0.00 33.73 2.52
3414 6579 6.485648 GTGTGTACCAAGGTAGAAACAGAAAT 59.514 38.462 10.87 0.00 33.73 2.17
3415 6580 7.658575 GTGTGTACCAAGGTAGAAACAGAAATA 59.341 37.037 10.87 0.00 33.73 1.40
3416 6581 7.876068 TGTGTACCAAGGTAGAAACAGAAATAG 59.124 37.037 0.00 0.00 0.00 1.73
3417 6582 8.092687 GTGTACCAAGGTAGAAACAGAAATAGA 58.907 37.037 0.00 0.00 0.00 1.98
3418 6583 8.092687 TGTACCAAGGTAGAAACAGAAATAGAC 58.907 37.037 0.00 0.00 0.00 2.59
3419 6584 7.074653 ACCAAGGTAGAAACAGAAATAGACA 57.925 36.000 0.00 0.00 0.00 3.41
3420 6585 7.162082 ACCAAGGTAGAAACAGAAATAGACAG 58.838 38.462 0.00 0.00 0.00 3.51
3421 6586 7.016268 ACCAAGGTAGAAACAGAAATAGACAGA 59.984 37.037 0.00 0.00 0.00 3.41
3422 6587 7.332182 CCAAGGTAGAAACAGAAATAGACAGAC 59.668 40.741 0.00 0.00 0.00 3.51
3423 6588 6.937392 AGGTAGAAACAGAAATAGACAGACC 58.063 40.000 0.00 0.00 0.00 3.85
3424 6589 6.497259 AGGTAGAAACAGAAATAGACAGACCA 59.503 38.462 0.00 0.00 0.00 4.02
3425 6590 7.016268 AGGTAGAAACAGAAATAGACAGACCAA 59.984 37.037 0.00 0.00 0.00 3.67
3426 6591 7.660208 GGTAGAAACAGAAATAGACAGACCAAA 59.340 37.037 0.00 0.00 0.00 3.28
3427 6592 9.052759 GTAGAAACAGAAATAGACAGACCAAAA 57.947 33.333 0.00 0.00 0.00 2.44
3428 6593 8.697507 AGAAACAGAAATAGACAGACCAAAAT 57.302 30.769 0.00 0.00 0.00 1.82
3429 6594 8.787852 AGAAACAGAAATAGACAGACCAAAATC 58.212 33.333 0.00 0.00 0.00 2.17
3430 6595 8.697507 AAACAGAAATAGACAGACCAAAATCT 57.302 30.769 0.00 0.00 0.00 2.40
3440 6605 4.863491 CAGACCAAAATCTGTTGACCTTG 58.137 43.478 0.00 0.00 41.12 3.61
3441 6606 3.319122 AGACCAAAATCTGTTGACCTTGC 59.681 43.478 0.00 0.00 0.00 4.01
3442 6607 3.299503 ACCAAAATCTGTTGACCTTGCT 58.700 40.909 0.00 0.00 0.00 3.91
3443 6608 4.469657 ACCAAAATCTGTTGACCTTGCTA 58.530 39.130 0.00 0.00 0.00 3.49
3444 6609 4.892934 ACCAAAATCTGTTGACCTTGCTAA 59.107 37.500 0.00 0.00 0.00 3.09
3445 6610 5.362430 ACCAAAATCTGTTGACCTTGCTAAA 59.638 36.000 0.00 0.00 0.00 1.85
3446 6611 6.041979 ACCAAAATCTGTTGACCTTGCTAAAT 59.958 34.615 0.00 0.00 0.00 1.40
3447 6612 6.587608 CCAAAATCTGTTGACCTTGCTAAATC 59.412 38.462 0.00 0.00 0.00 2.17
3448 6613 6.899393 AAATCTGTTGACCTTGCTAAATCA 57.101 33.333 0.00 0.00 0.00 2.57
3449 6614 7.472334 AAATCTGTTGACCTTGCTAAATCAT 57.528 32.000 0.00 0.00 0.00 2.45
3450 6615 7.472334 AATCTGTTGACCTTGCTAAATCATT 57.528 32.000 0.00 0.00 0.00 2.57
3451 6616 6.899393 TCTGTTGACCTTGCTAAATCATTT 57.101 33.333 0.00 0.00 0.00 2.32
3452 6617 6.680810 TCTGTTGACCTTGCTAAATCATTTG 58.319 36.000 0.00 0.00 0.00 2.32
3453 6618 5.782047 TGTTGACCTTGCTAAATCATTTGG 58.218 37.500 0.00 0.00 0.00 3.28
3454 6619 4.454728 TGACCTTGCTAAATCATTTGGC 57.545 40.909 11.40 11.40 45.98 4.52
3455 6620 3.195396 TGACCTTGCTAAATCATTTGGCC 59.805 43.478 15.25 0.00 45.30 5.36
3456 6621 2.166254 ACCTTGCTAAATCATTTGGCCG 59.834 45.455 15.25 6.89 45.30 6.13
3457 6622 2.166254 CCTTGCTAAATCATTTGGCCGT 59.834 45.455 15.25 0.00 45.30 5.68
3458 6623 2.937469 TGCTAAATCATTTGGCCGTG 57.063 45.000 15.25 0.00 45.30 4.94
3459 6624 1.135141 TGCTAAATCATTTGGCCGTGC 60.135 47.619 15.25 0.80 45.30 5.34
3460 6625 1.135141 GCTAAATCATTTGGCCGTGCA 60.135 47.619 7.22 0.00 40.75 4.57
3461 6626 2.673610 GCTAAATCATTTGGCCGTGCAA 60.674 45.455 7.22 0.00 40.75 4.08
3462 6627 2.083167 AAATCATTTGGCCGTGCAAG 57.917 45.000 0.00 0.00 0.00 4.01
3463 6628 0.968405 AATCATTTGGCCGTGCAAGT 59.032 45.000 0.00 0.00 0.00 3.16
3464 6629 0.244450 ATCATTTGGCCGTGCAAGTG 59.756 50.000 0.00 0.00 0.00 3.16
3465 6630 2.023223 CATTTGGCCGTGCAAGTGC 61.023 57.895 0.00 1.83 42.50 4.40
3466 6631 2.202395 ATTTGGCCGTGCAAGTGCT 61.202 52.632 4.69 0.00 42.66 4.40
3467 6632 2.146073 ATTTGGCCGTGCAAGTGCTC 62.146 55.000 4.69 0.00 42.66 4.26
3470 6635 3.730761 GCCGTGCAAGTGCTCCAG 61.731 66.667 4.69 0.00 42.66 3.86
3471 6636 2.031012 CCGTGCAAGTGCTCCAGA 59.969 61.111 4.69 0.00 42.66 3.86
3472 6637 1.376424 CCGTGCAAGTGCTCCAGAT 60.376 57.895 4.69 0.00 42.66 2.90
3473 6638 1.642037 CCGTGCAAGTGCTCCAGATG 61.642 60.000 4.69 0.00 42.66 2.90
3474 6639 1.505353 GTGCAAGTGCTCCAGATGC 59.495 57.895 4.69 0.00 42.66 3.91
3475 6640 0.959372 GTGCAAGTGCTCCAGATGCT 60.959 55.000 4.69 0.00 42.66 3.79
3476 6641 0.251033 TGCAAGTGCTCCAGATGCTT 60.251 50.000 4.69 0.00 42.66 3.91
3477 6642 0.886563 GCAAGTGCTCCAGATGCTTT 59.113 50.000 0.00 0.00 38.21 3.51
3478 6643 1.271656 GCAAGTGCTCCAGATGCTTTT 59.728 47.619 0.00 0.00 38.21 2.27
3479 6644 2.288640 GCAAGTGCTCCAGATGCTTTTT 60.289 45.455 0.00 0.00 38.21 1.94
3480 6645 3.057315 GCAAGTGCTCCAGATGCTTTTTA 60.057 43.478 0.00 0.00 38.21 1.52
3481 6646 4.559300 GCAAGTGCTCCAGATGCTTTTTAA 60.559 41.667 0.00 0.00 38.21 1.52
3482 6647 5.159209 CAAGTGCTCCAGATGCTTTTTAAG 58.841 41.667 0.00 0.00 0.00 1.85
3483 6648 4.655963 AGTGCTCCAGATGCTTTTTAAGA 58.344 39.130 0.00 0.00 0.00 2.10
3484 6649 5.259632 AGTGCTCCAGATGCTTTTTAAGAT 58.740 37.500 0.00 0.00 0.00 2.40
3485 6650 5.125097 AGTGCTCCAGATGCTTTTTAAGATG 59.875 40.000 0.00 0.00 0.00 2.90
3486 6651 5.124457 GTGCTCCAGATGCTTTTTAAGATGA 59.876 40.000 0.00 0.00 0.00 2.92
3487 6652 5.889853 TGCTCCAGATGCTTTTTAAGATGAT 59.110 36.000 0.00 0.00 0.00 2.45
3488 6653 6.379133 TGCTCCAGATGCTTTTTAAGATGATT 59.621 34.615 0.00 0.00 0.00 2.57
3489 6654 6.696148 GCTCCAGATGCTTTTTAAGATGATTG 59.304 38.462 0.00 0.00 0.00 2.67
3490 6655 7.630082 GCTCCAGATGCTTTTTAAGATGATTGT 60.630 37.037 0.00 0.00 0.00 2.71
3491 6656 8.806429 TCCAGATGCTTTTTAAGATGATTGTA 57.194 30.769 0.00 0.00 0.00 2.41
3492 6657 9.241919 TCCAGATGCTTTTTAAGATGATTGTAA 57.758 29.630 0.00 0.00 0.00 2.41
3493 6658 9.512435 CCAGATGCTTTTTAAGATGATTGTAAG 57.488 33.333 0.00 0.00 0.00 2.34
3494 6659 9.512435 CAGATGCTTTTTAAGATGATTGTAAGG 57.488 33.333 0.00 0.00 0.00 2.69
3495 6660 8.193438 AGATGCTTTTTAAGATGATTGTAAGGC 58.807 33.333 0.00 0.00 0.00 4.35
3496 6661 7.225784 TGCTTTTTAAGATGATTGTAAGGCA 57.774 32.000 0.00 0.00 0.00 4.75
3497 6662 7.665690 TGCTTTTTAAGATGATTGTAAGGCAA 58.334 30.769 0.00 0.00 41.89 4.52
3498 6663 7.814107 TGCTTTTTAAGATGATTGTAAGGCAAG 59.186 33.333 0.00 0.00 40.86 4.01
3499 6664 8.028938 GCTTTTTAAGATGATTGTAAGGCAAGA 58.971 33.333 0.00 0.00 40.86 3.02
3500 6665 9.565213 CTTTTTAAGATGATTGTAAGGCAAGAG 57.435 33.333 0.00 0.00 40.86 2.85
3501 6666 7.630242 TTTAAGATGATTGTAAGGCAAGAGG 57.370 36.000 0.00 0.00 40.86 3.69
3502 6667 5.441718 AAGATGATTGTAAGGCAAGAGGA 57.558 39.130 0.00 0.00 40.86 3.71
3503 6668 5.441718 AGATGATTGTAAGGCAAGAGGAA 57.558 39.130 0.00 0.00 40.86 3.36
3504 6669 5.435291 AGATGATTGTAAGGCAAGAGGAAG 58.565 41.667 0.00 0.00 40.86 3.46
3505 6670 4.640771 TGATTGTAAGGCAAGAGGAAGT 57.359 40.909 0.00 0.00 40.86 3.01
3506 6671 4.326826 TGATTGTAAGGCAAGAGGAAGTG 58.673 43.478 0.00 0.00 40.86 3.16
3507 6672 2.185004 TGTAAGGCAAGAGGAAGTGC 57.815 50.000 0.00 0.00 40.14 4.40
3508 6673 1.699634 TGTAAGGCAAGAGGAAGTGCT 59.300 47.619 0.00 0.00 40.70 4.40
3509 6674 2.903784 TGTAAGGCAAGAGGAAGTGCTA 59.096 45.455 0.00 0.00 40.70 3.49
3510 6675 3.519510 TGTAAGGCAAGAGGAAGTGCTAT 59.480 43.478 0.00 0.00 40.70 2.97
3511 6676 4.714802 TGTAAGGCAAGAGGAAGTGCTATA 59.285 41.667 0.00 0.00 40.70 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.392998 GCCAAAGAAGGAGATCGCCA 60.393 55.000 18.44 0.00 0.00 5.69
79 80 0.806868 CGACACCTACTACGAGCCAA 59.193 55.000 0.00 0.00 0.00 4.52
80 81 0.321919 ACGACACCTACTACGAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
86 87 0.028637 GCCGCTACGACACCTACTAC 59.971 60.000 0.00 0.00 0.00 2.73
166 176 0.321564 CCAGGACCAAAGCGTGATCA 60.322 55.000 0.00 0.00 0.00 2.92
229 242 2.012414 TTCGAGTTTGGCGTCGACG 61.012 57.895 32.57 32.57 44.55 5.12
331 344 1.738099 CTGGAGGCCACGTTCTTCG 60.738 63.158 5.01 0.00 46.00 3.79
380 393 2.248487 GTCGAACGCATAGAACGACTT 58.752 47.619 0.00 0.00 42.76 3.01
503 519 4.521062 CTTCTCCGCCGCCTCCTG 62.521 72.222 0.00 0.00 0.00 3.86
576 592 0.588980 CGAGAACGTGATCGCATCGA 60.589 55.000 7.12 0.00 39.83 3.59
609 625 5.167921 TCCCTAAACCCTAATTCCCTATCC 58.832 45.833 0.00 0.00 0.00 2.59
610 626 6.351966 CGATCCCTAAACCCTAATTCCCTATC 60.352 46.154 0.00 0.00 0.00 2.08
611 627 5.487845 CGATCCCTAAACCCTAATTCCCTAT 59.512 44.000 0.00 0.00 0.00 2.57
612 628 4.842380 CGATCCCTAAACCCTAATTCCCTA 59.158 45.833 0.00 0.00 0.00 3.53
613 629 3.651423 CGATCCCTAAACCCTAATTCCCT 59.349 47.826 0.00 0.00 0.00 4.20
742 3298 1.690219 GGAGATGCCGTGTGGAGGAT 61.690 60.000 0.00 0.00 37.49 3.24
764 3337 1.231296 CGGCGATCTCAGGATCTCGA 61.231 60.000 0.00 0.00 44.42 4.04
765 3338 1.208870 CGGCGATCTCAGGATCTCG 59.791 63.158 0.00 0.00 44.42 4.04
766 3339 1.080839 GCGGCGATCTCAGGATCTC 60.081 63.158 12.98 0.00 44.42 2.75
767 3340 2.569354 GGCGGCGATCTCAGGATCT 61.569 63.158 12.98 0.00 44.42 2.75
768 3341 2.048690 GGCGGCGATCTCAGGATC 60.049 66.667 12.98 0.00 43.48 3.36
769 3342 3.983494 CGGCGGCGATCTCAGGAT 61.983 66.667 29.19 0.00 34.45 3.24
795 3396 3.255379 GCGCTCCCGTTCGACATC 61.255 66.667 0.00 0.00 36.67 3.06
870 3479 1.587613 GACATCGCCGAGACTGCTC 60.588 63.158 0.00 0.00 37.81 4.26
969 3578 2.662596 GTGTGGACGATGGCCAGA 59.337 61.111 13.05 0.00 35.77 3.86
1052 3661 9.871238 GATTTATGTACTCGGTGGAATACATAT 57.129 33.333 6.33 0.00 43.44 1.78
1053 3662 8.862085 TGATTTATGTACTCGGTGGAATACATA 58.138 33.333 2.37 2.37 42.13 2.29
1056 3665 6.423001 GGTGATTTATGTACTCGGTGGAATAC 59.577 42.308 0.00 0.00 0.00 1.89
1091 3700 1.461091 GGTGACGACTGAGGACCACA 61.461 60.000 0.00 0.00 0.00 4.17
1093 3702 3.773370 GGTGACGACTGAGGACCA 58.227 61.111 0.00 0.00 0.00 4.02
1206 3824 2.500229 GTGGTCTTTTGGTCGGAATCA 58.500 47.619 0.00 0.00 0.00 2.57
1210 3828 1.070105 CCGTGGTCTTTTGGTCGGA 59.930 57.895 0.00 0.00 40.29 4.55
1308 3935 3.283684 CGTTCGGGGTGCTTGCAA 61.284 61.111 0.00 0.00 0.00 4.08
1343 3970 4.745620 GGCTGACGTCTTTAACCTCATATC 59.254 45.833 17.92 0.00 0.00 1.63
1347 3974 1.336517 CGGCTGACGTCTTTAACCTCA 60.337 52.381 17.92 0.00 37.93 3.86
1383 4010 2.024868 TGAATGGTCGTCGGCGTTG 61.025 57.895 10.18 0.00 39.49 4.10
1406 4033 2.467838 CATCTTCGTCATCTGTCGCAT 58.532 47.619 0.00 0.00 0.00 4.73
1422 4049 1.815421 GCCAACATCGTCGCCATCT 60.815 57.895 0.00 0.00 0.00 2.90
1446 4091 7.781763 GTATCCACGAAAATTTTCTTCACAG 57.218 36.000 24.53 12.80 35.07 3.66
1816 4503 2.613977 CGAGCATGGTGAGAAAGGAGTT 60.614 50.000 0.00 0.00 0.00 3.01
1824 4511 2.580815 CTGCCGAGCATGGTGAGA 59.419 61.111 0.00 0.00 38.13 3.27
1882 4569 2.034221 GGCCTCCCCAACACAGAC 59.966 66.667 0.00 0.00 0.00 3.51
1922 4609 0.797249 CTGTACGAAGGAACCGAGCG 60.797 60.000 0.00 0.00 0.00 5.03
1944 4631 1.584761 TGTTTCGTTGTCGACACGAAG 59.415 47.619 33.09 20.08 45.86 3.79
1956 4643 3.326880 AGGATAAGTGGAGGTGTTTCGTT 59.673 43.478 0.00 0.00 0.00 3.85
2004 4691 1.079819 CGTGAATGCTGGGAGACGT 60.080 57.895 0.00 0.00 0.00 4.34
2007 4694 1.219124 GCTCGTGAATGCTGGGAGA 59.781 57.895 0.00 0.00 0.00 3.71
2013 4700 2.185350 CGGAGGCTCGTGAATGCT 59.815 61.111 8.69 0.00 0.00 3.79
2032 4719 2.094906 CGTGTCCGATCAGTTGAAGGTA 60.095 50.000 0.00 0.00 35.63 3.08
2112 4799 1.733402 TTTGCAGGTTCGGTGCTTGG 61.733 55.000 0.00 0.00 41.78 3.61
2118 4805 1.336755 GACAATGTTTGCAGGTTCGGT 59.663 47.619 0.00 0.00 0.00 4.69
2128 4815 4.667262 TCGAACAACAAGGACAATGTTTG 58.333 39.130 0.00 0.00 38.90 2.93
2145 4832 0.780002 TGCGACGCTTTACTTCGAAC 59.220 50.000 22.08 0.00 42.29 3.95
2184 4871 2.879826 TCGTCGTAGTCGTACTCATCA 58.120 47.619 0.00 0.00 40.43 3.07
2185 4872 3.420289 CGATCGTCGTAGTCGTACTCATC 60.420 52.174 7.03 0.00 40.43 2.92
2187 4874 1.848608 CGATCGTCGTAGTCGTACTCA 59.151 52.381 7.03 0.00 40.43 3.41
2346 5033 3.706373 GTCCTCTGCGCCCTTCCA 61.706 66.667 4.18 0.00 0.00 3.53
2363 5050 2.742372 CCAAGAACCGGACCAGCG 60.742 66.667 9.46 0.00 0.00 5.18
2447 5134 0.247736 AATCTCGCGCTTCAGTTCCT 59.752 50.000 5.56 0.00 0.00 3.36
2466 5153 0.948623 CGTTCACTGCCCATCGTTCA 60.949 55.000 0.00 0.00 0.00 3.18
2478 5165 0.464036 TGCTGGTTGTCTCGTTCACT 59.536 50.000 0.00 0.00 0.00 3.41
2493 5180 0.868406 GTCAACGGAACTCCTTGCTG 59.132 55.000 0.00 0.00 0.00 4.41
2512 5199 0.963962 AAAGGCACACAAGCATCCAG 59.036 50.000 0.00 0.00 35.83 3.86
2544 5238 9.613428 AAATTATCACGAATCCATCAGAAGTTA 57.387 29.630 0.00 0.00 0.00 2.24
2602 5296 1.334160 TGGTTAAGTCGACTGAGCCA 58.666 50.000 29.37 29.37 0.00 4.75
2604 5298 2.924290 GACATGGTTAAGTCGACTGAGC 59.076 50.000 20.85 19.70 0.00 4.26
2609 5303 6.963049 AACATAAGACATGGTTAAGTCGAC 57.037 37.500 7.70 7.70 39.67 4.20
2637 5368 7.650903 CACGAATCTCAATGTAAGATCTCATGA 59.349 37.037 0.00 0.00 32.29 3.07
2639 5370 7.495901 ACACGAATCTCAATGTAAGATCTCAT 58.504 34.615 0.00 0.00 32.29 2.90
2674 5414 3.937706 AGTGACATAACATGCAAGAGAGC 59.062 43.478 0.00 0.00 0.00 4.09
2703 5443 6.591834 CAGTCGAATGAGATTTAACCAAGTCT 59.408 38.462 7.15 0.00 33.74 3.24
2721 5461 1.919240 TTGGCTAGGTCTCAGTCGAA 58.081 50.000 0.00 0.00 0.00 3.71
2737 5477 5.719173 ACAATCAATAAATGACGGGTTTGG 58.281 37.500 0.00 0.00 41.93 3.28
2800 5540 6.183361 GGAGGGGCAATCCACATGATATATAT 60.183 42.308 0.00 0.00 38.61 0.86
2812 5552 3.023116 CAGGGGAGGGGCAATCCA 61.023 66.667 9.17 0.00 38.70 3.41
2835 5576 7.094162 GCTTTATCTTTAGATTTAGATGGGGGC 60.094 40.741 0.00 0.00 36.05 5.80
2836 5577 7.944554 TGCTTTATCTTTAGATTTAGATGGGGG 59.055 37.037 0.00 0.00 36.05 5.40
2866 5607 5.716228 TCGAAACCCTAACATGTACTCCTTA 59.284 40.000 0.00 0.00 0.00 2.69
2867 5608 4.529377 TCGAAACCCTAACATGTACTCCTT 59.471 41.667 0.00 0.00 0.00 3.36
2868 5609 4.091549 TCGAAACCCTAACATGTACTCCT 58.908 43.478 0.00 0.00 0.00 3.69
2869 5610 4.460948 TCGAAACCCTAACATGTACTCC 57.539 45.455 0.00 0.00 0.00 3.85
2870 5611 6.592607 TCAAATCGAAACCCTAACATGTACTC 59.407 38.462 0.00 0.00 0.00 2.59
2871 5612 6.370718 GTCAAATCGAAACCCTAACATGTACT 59.629 38.462 0.00 0.00 0.00 2.73
2872 5613 6.148150 TGTCAAATCGAAACCCTAACATGTAC 59.852 38.462 0.00 0.00 0.00 2.90
2873 5614 6.231951 TGTCAAATCGAAACCCTAACATGTA 58.768 36.000 0.00 0.00 0.00 2.29
2913 5829 1.268948 GCCTTGCTGCTAGCTATTTGC 60.269 52.381 17.23 12.29 42.97 3.68
2978 5894 5.638596 AGGACTTGAACGTGAAAAGTTTT 57.361 34.783 0.00 0.00 39.06 2.43
2995 5911 3.370315 CCAGCAATTAGAGCAGAAGGACT 60.370 47.826 0.00 0.00 0.00 3.85
3009 5925 2.937799 CAACAACAAACAGCCAGCAATT 59.062 40.909 0.00 0.00 0.00 2.32
3083 5999 4.009675 TGTCATGAAATAGTTGAGTGCCC 58.990 43.478 0.00 0.00 0.00 5.36
3087 6003 7.120285 CCACTGAATGTCATGAAATAGTTGAGT 59.880 37.037 0.00 0.00 0.00 3.41
3152 6068 9.368416 AGCAGGAATACTTGATATAGACACTAA 57.632 33.333 0.00 0.00 0.00 2.24
3195 6360 5.455056 AGTGTACTACCTACATATGCAGC 57.545 43.478 1.58 0.00 37.69 5.25
3241 6406 8.620116 TTTTGATGTGACAGATGATTAACAGA 57.380 30.769 0.00 0.00 0.00 3.41
3267 6432 7.390718 GGGAGACAAGTGTAGTGATGTATTTTT 59.609 37.037 0.00 0.00 0.00 1.94
3268 6433 6.879458 GGGAGACAAGTGTAGTGATGTATTTT 59.121 38.462 0.00 0.00 0.00 1.82
3269 6434 6.213600 AGGGAGACAAGTGTAGTGATGTATTT 59.786 38.462 0.00 0.00 0.00 1.40
3270 6435 5.721960 AGGGAGACAAGTGTAGTGATGTATT 59.278 40.000 0.00 0.00 0.00 1.89
3271 6436 5.127845 CAGGGAGACAAGTGTAGTGATGTAT 59.872 44.000 0.00 0.00 0.00 2.29
3272 6437 4.462834 CAGGGAGACAAGTGTAGTGATGTA 59.537 45.833 0.00 0.00 0.00 2.29
3273 6438 3.259374 CAGGGAGACAAGTGTAGTGATGT 59.741 47.826 0.00 0.00 0.00 3.06
3274 6439 3.854666 CAGGGAGACAAGTGTAGTGATG 58.145 50.000 0.00 0.00 0.00 3.07
3275 6440 2.234908 GCAGGGAGACAAGTGTAGTGAT 59.765 50.000 0.00 0.00 0.00 3.06
3276 6441 1.618837 GCAGGGAGACAAGTGTAGTGA 59.381 52.381 0.00 0.00 0.00 3.41
3277 6442 1.344438 TGCAGGGAGACAAGTGTAGTG 59.656 52.381 0.00 0.00 0.00 2.74
3278 6443 1.620819 CTGCAGGGAGACAAGTGTAGT 59.379 52.381 5.57 0.00 0.00 2.73
3279 6444 1.674221 GCTGCAGGGAGACAAGTGTAG 60.674 57.143 17.12 0.00 0.00 2.74
3280 6445 0.321671 GCTGCAGGGAGACAAGTGTA 59.678 55.000 17.12 0.00 0.00 2.90
3281 6446 1.072159 GCTGCAGGGAGACAAGTGT 59.928 57.895 17.12 0.00 0.00 3.55
3282 6447 1.673665 GGCTGCAGGGAGACAAGTG 60.674 63.158 17.12 0.00 0.00 3.16
3283 6448 2.753029 GGCTGCAGGGAGACAAGT 59.247 61.111 17.12 0.00 0.00 3.16
3284 6449 2.045536 GGGCTGCAGGGAGACAAG 60.046 66.667 17.12 0.00 0.00 3.16
3285 6450 2.853542 TGGGCTGCAGGGAGACAA 60.854 61.111 17.12 0.00 0.00 3.18
3286 6451 3.640407 GTGGGCTGCAGGGAGACA 61.640 66.667 17.12 0.00 0.00 3.41
3287 6452 3.640407 TGTGGGCTGCAGGGAGAC 61.640 66.667 17.12 0.00 0.00 3.36
3288 6453 3.640407 GTGTGGGCTGCAGGGAGA 61.640 66.667 17.12 0.00 0.00 3.71
3289 6454 2.703675 AAAGTGTGGGCTGCAGGGAG 62.704 60.000 17.12 0.00 0.00 4.30
3290 6455 2.766925 AAAGTGTGGGCTGCAGGGA 61.767 57.895 17.12 0.00 0.00 4.20
3291 6456 2.203538 AAAGTGTGGGCTGCAGGG 60.204 61.111 17.12 0.00 0.00 4.45
3292 6457 3.045142 CAAAGTGTGGGCTGCAGG 58.955 61.111 17.12 0.00 0.00 4.85
3293 6458 2.337532 GCAAAGTGTGGGCTGCAG 59.662 61.111 10.11 10.11 34.87 4.41
3294 6459 2.441717 TGCAAAGTGTGGGCTGCA 60.442 55.556 0.50 0.00 42.28 4.41
3295 6460 2.028043 GTGCAAAGTGTGGGCTGC 59.972 61.111 0.00 0.00 35.32 5.25
3296 6461 1.102809 TCTGTGCAAAGTGTGGGCTG 61.103 55.000 3.21 0.00 0.00 4.85
3297 6462 1.103398 GTCTGTGCAAAGTGTGGGCT 61.103 55.000 3.21 0.00 0.00 5.19
3298 6463 1.103398 AGTCTGTGCAAAGTGTGGGC 61.103 55.000 3.21 0.00 0.00 5.36
3299 6464 0.664761 CAGTCTGTGCAAAGTGTGGG 59.335 55.000 3.21 0.00 0.00 4.61
3300 6465 0.664761 CCAGTCTGTGCAAAGTGTGG 59.335 55.000 11.43 11.43 0.00 4.17
3301 6466 0.029834 GCCAGTCTGTGCAAAGTGTG 59.970 55.000 3.21 2.65 0.00 3.82
3302 6467 0.107017 AGCCAGTCTGTGCAAAGTGT 60.107 50.000 3.21 0.00 0.00 3.55
3303 6468 0.309922 CAGCCAGTCTGTGCAAAGTG 59.690 55.000 3.21 0.00 38.02 3.16
3304 6469 1.450531 GCAGCCAGTCTGTGCAAAGT 61.451 55.000 3.21 0.00 44.66 2.66
3305 6470 1.285023 GCAGCCAGTCTGTGCAAAG 59.715 57.895 9.88 0.00 44.66 2.77
3306 6471 1.453562 TGCAGCCAGTCTGTGCAAA 60.454 52.632 14.04 0.00 44.05 3.68
3307 6472 2.192711 TGCAGCCAGTCTGTGCAA 59.807 55.556 14.04 1.06 44.05 4.08
3309 6474 0.388134 CAAATGCAGCCAGTCTGTGC 60.388 55.000 8.19 8.19 44.66 4.57
3310 6475 0.242825 CCAAATGCAGCCAGTCTGTG 59.757 55.000 0.00 0.00 44.66 3.66
3311 6476 0.178981 ACCAAATGCAGCCAGTCTGT 60.179 50.000 0.00 0.00 44.66 3.41
3312 6477 0.963962 AACCAAATGCAGCCAGTCTG 59.036 50.000 0.00 0.00 45.62 3.51
3313 6478 0.963962 CAACCAAATGCAGCCAGTCT 59.036 50.000 0.00 0.00 0.00 3.24
3314 6479 0.668401 GCAACCAAATGCAGCCAGTC 60.668 55.000 0.00 0.00 45.70 3.51
3315 6480 1.368579 GCAACCAAATGCAGCCAGT 59.631 52.632 0.00 0.00 45.70 4.00
3316 6481 4.272100 GCAACCAAATGCAGCCAG 57.728 55.556 0.00 0.00 45.70 4.85
3322 6487 2.675032 GCCCTCTTAAGCAACCAAATGC 60.675 50.000 0.00 0.00 46.78 3.56
3323 6488 2.562298 TGCCCTCTTAAGCAACCAAATG 59.438 45.455 0.00 0.00 35.69 2.32
3324 6489 2.888212 TGCCCTCTTAAGCAACCAAAT 58.112 42.857 0.00 0.00 35.69 2.32
3325 6490 2.373335 TGCCCTCTTAAGCAACCAAA 57.627 45.000 0.00 0.00 35.69 3.28
3326 6491 2.041620 AGATGCCCTCTTAAGCAACCAA 59.958 45.455 0.00 0.00 43.36 3.67
3327 6492 1.635487 AGATGCCCTCTTAAGCAACCA 59.365 47.619 0.00 0.00 43.36 3.67
3328 6493 2.426842 AGATGCCCTCTTAAGCAACC 57.573 50.000 0.00 0.00 43.36 3.77
3329 6494 3.313803 GCTTAGATGCCCTCTTAAGCAAC 59.686 47.826 9.49 0.00 43.36 4.17
3330 6495 3.545703 GCTTAGATGCCCTCTTAAGCAA 58.454 45.455 9.49 0.00 43.36 3.91
3331 6496 2.158755 GGCTTAGATGCCCTCTTAAGCA 60.159 50.000 14.66 0.00 46.82 3.91
3332 6497 2.499197 GGCTTAGATGCCCTCTTAAGC 58.501 52.381 0.00 6.55 46.82 3.09
3342 6507 3.209410 AGTAGCAACATGGCTTAGATGC 58.791 45.455 1.62 0.00 42.71 3.91
3343 6508 4.272018 GTGAGTAGCAACATGGCTTAGATG 59.728 45.833 1.62 0.00 42.71 2.90
3344 6509 4.080919 TGTGAGTAGCAACATGGCTTAGAT 60.081 41.667 1.62 0.00 42.71 1.98
3345 6510 3.260632 TGTGAGTAGCAACATGGCTTAGA 59.739 43.478 1.62 0.00 42.71 2.10
3346 6511 3.599343 TGTGAGTAGCAACATGGCTTAG 58.401 45.455 1.62 0.00 42.71 2.18
3347 6512 3.694043 TGTGAGTAGCAACATGGCTTA 57.306 42.857 1.62 0.00 42.71 3.09
3348 6513 2.566833 TGTGAGTAGCAACATGGCTT 57.433 45.000 1.62 0.00 42.71 4.35
3350 6515 2.358957 TCATGTGAGTAGCAACATGGC 58.641 47.619 14.00 0.00 37.00 4.40
3351 6516 5.375417 TTTTCATGTGAGTAGCAACATGG 57.625 39.130 14.00 0.00 37.00 3.66
3371 6536 2.021457 CACTGGTCGGGTTGAGTTTTT 58.979 47.619 0.00 0.00 0.00 1.94
3372 6537 1.064979 ACACTGGTCGGGTTGAGTTTT 60.065 47.619 0.00 0.00 0.00 2.43
3373 6538 0.544697 ACACTGGTCGGGTTGAGTTT 59.455 50.000 0.00 0.00 0.00 2.66
3374 6539 0.179056 CACACTGGTCGGGTTGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
3375 6540 1.335132 ACACACTGGTCGGGTTGAGT 61.335 55.000 0.00 0.00 0.00 3.41
3376 6541 0.677288 TACACACTGGTCGGGTTGAG 59.323 55.000 0.00 0.00 0.00 3.02
3377 6542 0.390124 GTACACACTGGTCGGGTTGA 59.610 55.000 0.00 0.00 0.00 3.18
3378 6543 0.601841 GGTACACACTGGTCGGGTTG 60.602 60.000 0.00 0.00 0.00 3.77
3379 6544 1.049855 TGGTACACACTGGTCGGGTT 61.050 55.000 0.00 0.00 0.00 4.11
3380 6545 1.049855 TTGGTACACACTGGTCGGGT 61.050 55.000 0.00 0.00 39.29 5.28
3381 6546 0.320421 CTTGGTACACACTGGTCGGG 60.320 60.000 0.00 0.00 39.29 5.14
3382 6547 0.320421 CCTTGGTACACACTGGTCGG 60.320 60.000 0.00 0.00 39.29 4.79
3383 6548 0.391597 ACCTTGGTACACACTGGTCG 59.608 55.000 0.00 0.00 39.29 4.79
3384 6549 2.895404 TCTACCTTGGTACACACTGGTC 59.105 50.000 0.00 0.00 39.29 4.02
3385 6550 2.966915 TCTACCTTGGTACACACTGGT 58.033 47.619 0.00 4.69 39.29 4.00
3386 6551 4.062991 GTTTCTACCTTGGTACACACTGG 58.937 47.826 0.00 0.00 39.29 4.00
3387 6552 4.699637 TGTTTCTACCTTGGTACACACTG 58.300 43.478 0.00 0.00 39.29 3.66
3388 6553 4.652421 TCTGTTTCTACCTTGGTACACACT 59.348 41.667 0.00 0.00 39.29 3.55
3389 6554 4.952460 TCTGTTTCTACCTTGGTACACAC 58.048 43.478 0.00 0.00 39.29 3.82
3390 6555 5.617528 TTCTGTTTCTACCTTGGTACACA 57.382 39.130 0.00 0.00 39.29 3.72
3391 6556 8.092687 TCTATTTCTGTTTCTACCTTGGTACAC 58.907 37.037 0.00 0.00 39.29 2.90
3392 6557 8.092687 GTCTATTTCTGTTTCTACCTTGGTACA 58.907 37.037 0.00 0.00 0.00 2.90
3393 6558 8.092687 TGTCTATTTCTGTTTCTACCTTGGTAC 58.907 37.037 0.00 0.00 0.00 3.34
3394 6559 8.197592 TGTCTATTTCTGTTTCTACCTTGGTA 57.802 34.615 0.00 0.00 0.00 3.25
3395 6560 7.016268 TCTGTCTATTTCTGTTTCTACCTTGGT 59.984 37.037 0.00 0.00 0.00 3.67
3396 6561 7.332182 GTCTGTCTATTTCTGTTTCTACCTTGG 59.668 40.741 0.00 0.00 0.00 3.61
3397 6562 7.332182 GGTCTGTCTATTTCTGTTTCTACCTTG 59.668 40.741 0.00 0.00 0.00 3.61
3398 6563 7.016268 TGGTCTGTCTATTTCTGTTTCTACCTT 59.984 37.037 0.00 0.00 0.00 3.50
3399 6564 6.497259 TGGTCTGTCTATTTCTGTTTCTACCT 59.503 38.462 0.00 0.00 0.00 3.08
3400 6565 6.698380 TGGTCTGTCTATTTCTGTTTCTACC 58.302 40.000 0.00 0.00 0.00 3.18
3401 6566 8.603242 TTTGGTCTGTCTATTTCTGTTTCTAC 57.397 34.615 0.00 0.00 0.00 2.59
3402 6567 9.793259 ATTTTGGTCTGTCTATTTCTGTTTCTA 57.207 29.630 0.00 0.00 0.00 2.10
3403 6568 8.697507 ATTTTGGTCTGTCTATTTCTGTTTCT 57.302 30.769 0.00 0.00 0.00 2.52
3404 6569 8.787852 AGATTTTGGTCTGTCTATTTCTGTTTC 58.212 33.333 0.00 0.00 0.00 2.78
3405 6570 8.571336 CAGATTTTGGTCTGTCTATTTCTGTTT 58.429 33.333 0.00 0.00 40.54 2.83
3406 6571 8.103948 CAGATTTTGGTCTGTCTATTTCTGTT 57.896 34.615 0.00 0.00 40.54 3.16
3407 6572 7.678947 CAGATTTTGGTCTGTCTATTTCTGT 57.321 36.000 0.00 0.00 40.54 3.41
3419 6584 3.319122 GCAAGGTCAACAGATTTTGGTCT 59.681 43.478 0.00 0.00 0.00 3.85
3420 6585 3.319122 AGCAAGGTCAACAGATTTTGGTC 59.681 43.478 0.00 0.00 0.00 4.02
3421 6586 3.299503 AGCAAGGTCAACAGATTTTGGT 58.700 40.909 0.00 0.00 0.00 3.67
3422 6587 5.452078 TTAGCAAGGTCAACAGATTTTGG 57.548 39.130 0.00 0.00 0.00 3.28
3423 6588 7.147312 TGATTTAGCAAGGTCAACAGATTTTG 58.853 34.615 0.00 0.00 0.00 2.44
3424 6589 7.288810 TGATTTAGCAAGGTCAACAGATTTT 57.711 32.000 0.00 0.00 0.00 1.82
3425 6590 6.899393 TGATTTAGCAAGGTCAACAGATTT 57.101 33.333 0.00 0.00 0.00 2.17
3426 6591 7.472334 AATGATTTAGCAAGGTCAACAGATT 57.528 32.000 0.00 0.00 0.00 2.40
3427 6592 7.318141 CAAATGATTTAGCAAGGTCAACAGAT 58.682 34.615 0.00 0.00 0.00 2.90
3428 6593 6.294675 CCAAATGATTTAGCAAGGTCAACAGA 60.295 38.462 0.00 0.00 0.00 3.41
3429 6594 5.865552 CCAAATGATTTAGCAAGGTCAACAG 59.134 40.000 0.00 0.00 0.00 3.16
3430 6595 5.782047 CCAAATGATTTAGCAAGGTCAACA 58.218 37.500 0.00 0.00 0.00 3.33
3431 6596 4.627035 GCCAAATGATTTAGCAAGGTCAAC 59.373 41.667 3.48 0.00 0.00 3.18
3432 6597 4.322650 GGCCAAATGATTTAGCAAGGTCAA 60.323 41.667 10.28 0.00 0.00 3.18
3433 6598 3.195396 GGCCAAATGATTTAGCAAGGTCA 59.805 43.478 10.28 0.00 0.00 4.02
3434 6599 3.734902 CGGCCAAATGATTTAGCAAGGTC 60.735 47.826 10.28 0.00 0.00 3.85
3435 6600 2.166254 CGGCCAAATGATTTAGCAAGGT 59.834 45.455 10.28 0.00 0.00 3.50
3436 6601 2.166254 ACGGCCAAATGATTTAGCAAGG 59.834 45.455 10.28 0.00 0.00 3.61
3437 6602 3.181397 CACGGCCAAATGATTTAGCAAG 58.819 45.455 10.28 6.17 0.00 4.01
3438 6603 2.673610 GCACGGCCAAATGATTTAGCAA 60.674 45.455 10.28 0.00 0.00 3.91
3439 6604 1.135141 GCACGGCCAAATGATTTAGCA 60.135 47.619 10.28 0.00 0.00 3.49
3440 6605 1.135141 TGCACGGCCAAATGATTTAGC 60.135 47.619 2.24 0.00 0.00 3.09
3441 6606 2.937469 TGCACGGCCAAATGATTTAG 57.063 45.000 2.24 0.00 0.00 1.85
3442 6607 2.560542 ACTTGCACGGCCAAATGATTTA 59.439 40.909 2.24 0.00 0.00 1.40
3443 6608 1.344114 ACTTGCACGGCCAAATGATTT 59.656 42.857 2.24 0.00 0.00 2.17
3444 6609 0.968405 ACTTGCACGGCCAAATGATT 59.032 45.000 2.24 0.00 0.00 2.57
3445 6610 0.244450 CACTTGCACGGCCAAATGAT 59.756 50.000 2.24 0.00 0.00 2.45
3446 6611 1.659233 CACTTGCACGGCCAAATGA 59.341 52.632 2.24 0.00 0.00 2.57
3447 6612 2.023223 GCACTTGCACGGCCAAATG 61.023 57.895 2.24 0.00 41.59 2.32
3448 6613 2.146073 GAGCACTTGCACGGCCAAAT 62.146 55.000 2.24 0.00 45.16 2.32
3449 6614 2.832661 AGCACTTGCACGGCCAAA 60.833 55.556 2.24 0.00 45.16 3.28
3450 6615 3.286751 GAGCACTTGCACGGCCAA 61.287 61.111 2.24 0.00 45.16 4.52
3453 6618 3.730761 CTGGAGCACTTGCACGGC 61.731 66.667 3.62 0.00 45.16 5.68
3454 6619 1.376424 ATCTGGAGCACTTGCACGG 60.376 57.895 3.62 1.42 45.16 4.94
3455 6620 1.792301 CATCTGGAGCACTTGCACG 59.208 57.895 3.62 0.00 45.16 5.34
3456 6621 0.959372 AGCATCTGGAGCACTTGCAC 60.959 55.000 3.62 0.00 45.16 4.57
3457 6622 0.251033 AAGCATCTGGAGCACTTGCA 60.251 50.000 3.62 0.00 45.16 4.08
3458 6623 0.886563 AAAGCATCTGGAGCACTTGC 59.113 50.000 0.00 0.00 42.49 4.01
3459 6624 3.655276 AAAAAGCATCTGGAGCACTTG 57.345 42.857 0.00 0.00 0.00 3.16
3460 6625 5.072741 TCTTAAAAAGCATCTGGAGCACTT 58.927 37.500 0.00 0.00 0.00 3.16
3461 6626 4.655963 TCTTAAAAAGCATCTGGAGCACT 58.344 39.130 0.00 0.00 0.00 4.40
3462 6627 5.124457 TCATCTTAAAAAGCATCTGGAGCAC 59.876 40.000 0.00 0.00 0.00 4.40
3463 6628 5.255687 TCATCTTAAAAAGCATCTGGAGCA 58.744 37.500 0.00 0.00 0.00 4.26
3464 6629 5.824904 TCATCTTAAAAAGCATCTGGAGC 57.175 39.130 0.00 0.00 0.00 4.70
3465 6630 7.769220 ACAATCATCTTAAAAAGCATCTGGAG 58.231 34.615 0.00 0.00 0.00 3.86
3466 6631 7.707624 ACAATCATCTTAAAAAGCATCTGGA 57.292 32.000 0.00 0.00 0.00 3.86
3467 6632 9.512435 CTTACAATCATCTTAAAAAGCATCTGG 57.488 33.333 0.00 0.00 0.00 3.86
3468 6633 9.512435 CCTTACAATCATCTTAAAAAGCATCTG 57.488 33.333 0.00 0.00 0.00 2.90
3469 6634 8.193438 GCCTTACAATCATCTTAAAAAGCATCT 58.807 33.333 0.00 0.00 0.00 2.90
3470 6635 7.975616 TGCCTTACAATCATCTTAAAAAGCATC 59.024 33.333 0.00 0.00 0.00 3.91
3471 6636 7.839907 TGCCTTACAATCATCTTAAAAAGCAT 58.160 30.769 0.00 0.00 0.00 3.79
3472 6637 7.225784 TGCCTTACAATCATCTTAAAAAGCA 57.774 32.000 0.00 0.00 0.00 3.91
3473 6638 8.028938 TCTTGCCTTACAATCATCTTAAAAAGC 58.971 33.333 0.00 0.00 37.72 3.51
3474 6639 9.565213 CTCTTGCCTTACAATCATCTTAAAAAG 57.435 33.333 0.00 0.00 37.72 2.27
3475 6640 8.522830 CCTCTTGCCTTACAATCATCTTAAAAA 58.477 33.333 0.00 0.00 37.72 1.94
3476 6641 7.888021 TCCTCTTGCCTTACAATCATCTTAAAA 59.112 33.333 0.00 0.00 37.72 1.52
3477 6642 7.402054 TCCTCTTGCCTTACAATCATCTTAAA 58.598 34.615 0.00 0.00 37.72 1.52
3478 6643 6.957631 TCCTCTTGCCTTACAATCATCTTAA 58.042 36.000 0.00 0.00 37.72 1.85
3479 6644 6.560003 TCCTCTTGCCTTACAATCATCTTA 57.440 37.500 0.00 0.00 37.72 2.10
3480 6645 5.441718 TCCTCTTGCCTTACAATCATCTT 57.558 39.130 0.00 0.00 37.72 2.40
3481 6646 5.045286 ACTTCCTCTTGCCTTACAATCATCT 60.045 40.000 0.00 0.00 37.72 2.90
3482 6647 5.065731 CACTTCCTCTTGCCTTACAATCATC 59.934 44.000 0.00 0.00 37.72 2.92
3483 6648 4.946157 CACTTCCTCTTGCCTTACAATCAT 59.054 41.667 0.00 0.00 37.72 2.45
3484 6649 4.326826 CACTTCCTCTTGCCTTACAATCA 58.673 43.478 0.00 0.00 37.72 2.57
3485 6650 3.127721 GCACTTCCTCTTGCCTTACAATC 59.872 47.826 0.00 0.00 37.72 2.67
3486 6651 3.084786 GCACTTCCTCTTGCCTTACAAT 58.915 45.455 0.00 0.00 37.72 2.71
3487 6652 2.106511 AGCACTTCCTCTTGCCTTACAA 59.893 45.455 0.00 0.00 39.75 2.41
3488 6653 1.699634 AGCACTTCCTCTTGCCTTACA 59.300 47.619 0.00 0.00 39.75 2.41
3489 6654 2.481289 AGCACTTCCTCTTGCCTTAC 57.519 50.000 0.00 0.00 39.75 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.