>input_sequence_49545
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--------ATGGATGAGCGGCCGAAACAGCCCATCATCTACGACGAGGTGGACGACGACTATATGTATTCCACCGAGTAC
ATAAATCACCCGCCGGCGCTGTGGTCCTCAGTCGTCA---------CCGGCGCCCTCTTTGGCCGCAGCCGCCGCCCGGC
CCCCGCGCCCGGCCCGGTGCCCCTGCGTGCGCTCCGCGTTTGCCTGGGAGTGAGATTGGGATATGATTCCGACCAAAAGA
CCACGGTGGACCAGTGGGTCACTTACGCCCTGAAGCATGCCGGCCCCGAC------CTCGAGCTTGACCTCCGCCTCGGC
CGAGACC---CCATTTGCAAGCACCCCGAACGGGCCGCCCACGCTAGGCGATATGAGGTTAAAGACGTCAGCCGGAAGCC
TCCGGAGACCAACGCCGACGACCATTCACCCCATGCGACAGATGACGAA------------------GATGGCGACGATG
TTGGCTCCAGCTGTGAAGAAAATTTTCGTGGATACG------------------------------------------GA
GAGTACACCGTCCTGTGGGGGGTTTTCTCCTGCCCCGCGCTGCGATCGCTTCGCCTTGGCGCTTGCAGGATCTCCCCGCC
GGCGGCCTTCAGCATGCCGTGGCTCGAGGCGCTCCGCCTCACACACGTCCCTGACGAGGAGGAGCACGTGCAAAGGCTCA
TATCCGCCTGCCCCCACCTCGTGGACCTGACTCTCGAGGCTTGTGGAACGGTGACCACGCTCTCGCTCCTCGGCAACACG
CACCTCCGCAGCCTCGCCCTCCGGTGCTGCCATAAATTAGCCGCCGTTGCCATCAACACGTCAGAGCTCCGCTCCTTTGA
CTACCGCGGTGCCGTCCCAGGCAACTCCTTTCTCACCATGCTCGGCAGCTCGCCATCTATCATGTCGTTCAAGGTCGACA
TCTGTGCGGTCTGTGTTGGGGAGGCCACCTCAGAAGAGGAGCTCAGCACGCTCGGTTCCTTCGTACAGCACTTCGTGTCG
ACAACGAAACACCTCCACTTATCCTGCGCCTTTATGGGCTCATGCTTCGCACGTCTCCCAGCATTCACGAGCCTCCGCTA
CCTTCAACTGATCGGACACGTGCCACGCGACGGTGACGACCCCGCCGCAGCAGCTGCCGCGACAAGCAAAATCCTCTGCC
AAGCACCGAACCTGCAAACATTGTCCTTGTTGTTCGAAGTAAAGCGTCGCAATCCCAATAAGTACGACCCTGATGAGTAC
GACTACGACGATCGCAGCGAGGGGCAGCTCCTCGATGCTCACCTCCTCAACTGCAACAAGTACGACACCCTCGACGTTCC
GGTGGCGAGCGTGGCCGTGCCGTCCTGCCTCAGGAGTCGGGTCAGGAAGATCAACCTGTTGCATTACCAAGGTGGAAGGG
CGCAGAGGACGCTGGTCCGGTTCTTGGTCCGCAACGCTGAAGTTCTTGAGAAGCTTTACTGTGGATTCGCCGAGGGGCCG
TTGTGGATTCAGAAGGAACTGAAGCGCGAGATTGAACGATGGGCAGTGAACGAGACAACCAGCAAGGAGTTCCGTTGA--
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>chr3D_1_TraesCS3D01G448300
AGCACGCGGAGGGTCTCCGACGGCAGCAAGCCGAGGCTGAGCATGTACTCGCCTACCACTTTCCTGGCGATCTCCTTCTT
TGGCTCGTAGTAGGTGTCGTAGCG---------GCCTTCCACGGCGAGCCGGAGGACTTGGACGCCTCGCGCCGCCGGGT
GGGAGAGAAGCGTGGTGATCACGCTTTGGTCCTGGTCCTGCGACG---ACAACCCGTCGCTGCCATATTGCAGGAACCTG
CCGTCGACGCCAAACTCGAACTTCACGCGCAGGGTAAGCGTCGTGACGTGGTCGGCCGCCGCGAGCGCCGCCTGAGCCGC
GGAGACGAAGGCGTCGCGCCGGGCGAAGAACGTGGCCTCCAGGCTCTTGCGCTCCTCTCCCCAGCTTTGGTAAAGTCGTT
CTATGCG---TTCGACGTGCGTCTCGAGATTTACGGCCCCCGAGGAGCGCAAGAGCGGCGAGCGCCAGCGCCGGGAGAGC
GCTCTCGTGGAGGCGGCCTCCTTGGCTGGGGCGAAGTGCAGGAGGCGGCGGAGAAGCTGGTCGGGGAGCGCGGACAGGCG
GTCGTCGCCGGCCATCCTCCACGTCCGCGGCTCGATGCGATCACGTTCTCGATGGGATGGGATGGGATAGGGAATTAGGG
TTTAGGGATCGGATCGGTACGTAGGG-AGAAATACTTTTTT---------------------------------------
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-------------------------------TTCTTCCGAAAGAAAAAAAA-----------------------------
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--------------------------------ATACGTTTACGTATTTGAGCAGGCAACGACGCAACGT--------CGG
TTATAAACCGATCTCTAATCCTCCACACGG-----------------CATCTCCGATCGAGATC----------------
------------CTGAGATCGCCGCCGCCAGCCGCGATGTCGAACGGGAGCGCGAC--GACGAGTCACTCGCACCAGATC
GTCGAACGGGAGCGC------GAGCGCGACGACCGTCTGAGCAGTCTCGGCGATGTCGTGCTTGGCCATATCCTCTCGTT
CCTCGACGCCGACGAGATCGGGCGTGCCGCGGCGCTCTCGAGGCGGTGGCGCGACGTTCTGGCCATCGTCCACACCGTCT
CCCTGGACATGGATGAGCGGCCGAAACAGCCCATCATCTACGACGAGGTGGACGACGACTATATGTATTCCACCGAGTAC
ATAAATCACCCGCCGGCGCTGTGGTCCTCAGTCGTCA---------CCGGCGCCCTCTTTGGCCGCAGCCGCCGCCCGGC
CCCCGCGCCCGGCCCGGTGCCCCTGCGTGCGCTCCGCGTTTGCCTGGGAGTGAGATTGGGATATGATTCCGACCAAAAGA
CCACGGTGGACCAGTGGGTCACTTACGCCCTGAAGCATGCCGGCCCCGAC------CTCGAGCTTGACCTCCGCCTCGGC
CGAGACC---CCATTTGCAAGCACCCCGAACGGGCCGCCCACGCTAGGCGATATGAGGTTAAAGACGTCAGCCGGAAGCC
TCCGGAGACCAACGCCGACGACCATTCACCCCATGCGACAGATGACGAA------------------GATGGCGACGATG
TTGGCTCCAGCTGTGAAGAAAATTTTCGTGGATACG------------------------------------------GA
GAGTACACCGTCCTGTGGGGGGTTTTCTCCTGCCCCGCGCTGCGATCGCTTCGCCTTGGCGCTTGCAGGATCTCCCCGCC
GGCGGCCTTCAGCATGCCGTGGCTCGAGGCGCTCCGCCTCACACACGTCCCTGACGAGGAGGAGCACGTGCAAAGGCTCA
TATCCGCCTGCCCCCACCTCGTGGACCTGACTCTCGAGGCTTGTGGAACGGTGACCACGCTCTCGCTCCTCGGCAACACG
CACCTCCGCAGCCTCGCCCTCCGGTGCTGCCATAAATTAGCCGCCGTTGCCATCAACACGTCAGAGCTCCGCTCCTTTGA
CTACCGCGGTGCCGTCCCAGGCAACTCCTTTCTCACCATGCTCGGCAGCTCGCCATCTATCATGTCGTTCAAGGTCGACA
TCTGTGCGGTCTGTGTTGGGGAGGCCACCTCAGAAGAGGAGCTCAGCACGCTCGGTTCCTTCGTACAGCACTTCGTGTCG
ACAACGAAACACCTCCACTTATCCTGCGCCTTTATGGGCTCATGCTTCGCACGTCTCCCAGCATTCACGAGCCTCCGCTA
CCTTCAACTGATCGGACACGTGCCACGCGACGGTGACGACCCCGCCGCAGCAGCTGCCGCGACAAGCAAAATCCTCTGCC
AAGCACCGAACCTGCAAACATTGTCCTTGTTGTTCGAAGTAAAGCGTCGCAATCCCAATAAGTACGACCCTGATGAGTAC
GACTACGACGATCGCAGCGAGGGGCAGCTCCTCGATGCTCACCTCCTCAACTGCAACAAGTACGACACCCTCGACGTTCC
GGTGGCGAGCGTGGCCGTGCCGTCCTGCCTCAGGAGTCGGGTCAGGAAGATCAACCTGTTGCATTACCAAGGTGGAAGGG
CGCAGAGGACGCTGGTCCGGTTCTTGGTCCGCAACGCTGAAGTTCTTGAGAAGCTTTACTGTGGATTCGCCGAGGGGCCG
TTGTGGATTCAGAAGGAACTGAAGCGCGAGATTGAACGATGGGCAGTGAACGAGACAACCAGCAAGGAGTTCCGTTGAC-
------TGGATGCTTGTGTGCCTTTGCAATTGCGGTATAACTTCTGATGGATTCGTGATAATTTAGTAAATATTGAACAA
TATTCTCTAAACATTTGGCTCAGTCGA--------------------------------CTTAACCATGTCTT-----AT
GTTATATTCATGAGATCTTACATTGAGATTCGTGTT---------TTTTTTTTGCTCTCTTGCATGTTATGTCACTTGAC
TGAGACTTGGTTAAATCTCATTCGACTGAGACCTAGCCAAACCCGTCATTTATTGATTGTCTAGAATGTCTACAGGAATT
ACAGTTATATATATAGTACATATATATCATGTGGATTGCCCCT-CCCCTGCCCCTGCCCCCATCTAAATCTAAAGATAAA
GCAATCTAAGGAGTACATGTTAGGGTTT----------------------------------------------------
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-------------------------------------------CGATTTGACAGTTTCAAATGCCCCAGCAAATAGCTAG
CAGCAAGGCCAGTAGTATAAAACTTCTCACCATCAGGTGAAAAGATGTAGTATAAAACTTTTCACGTTCAAGTCCTTCTG
CTCTAATTGCTGGCTGTTTGTTGTTGGATATGTTGTACGAAAGACGAATATAAGAAAACGTCCTCAGTAGTGAATTGTGG
GCACTCAACTATTTCATGACATTCAGTGGTCGATCATAGGCATTACTTTACTGCTACATCATCTCTTTTAGTGTCTATAT
CA------------------------------------------------------------------------------
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-----------AGTATTCCTGCTGCATATTAATTTGAATGCTGCATATGTAGGTAGTACACTAGTAAATAAACATACATA
CATACTCTGTTAATCATCTGTCACATCAAAAAAAAATACATCACTACACTTGTCTCCCTGCAGCCCACACTTTGCACAGA
CTGGCTGCATTTGGTTGCTTAAGAGGGCATCTAAGCCATGTTGCTACTCACATGAAAAAACTCAACCCGACCAGTGTGTA
CCAAGGTAGAAACAGAAATAGACAGACCAAAATCTGTTGACCTTGCTAAATCATTTGGCCGTGCAAGTGCTCCAGATGCT
TTTTAAGATGATTGTAAGGCAAGAGGAAGTGCTATA
>chr3D_1
AGCACGCGGAGGGTTTCCCACGGCAGGGAGCCGAGGCTGAGCGTGTAGTCGCCTACCGCTTTCCGAGCAATCTCACTCTC
GGGGTCATAGTAGGTGTCAGTGCGGATGACCCAGCCTTCGACGGCGAGCCGGAGATCCTCGACGCGTCGCGCTGCCGGGT
GGGAGAGAAGCGTGGCGATCACGTGGTGGTCCTGCGACCGCGACCCGTCCCTCTTGTCGTTGTCAGAGTGCAGGAGCCAG
CGTTTGATGCCGAACTCGAACTCCACACGCAGGGTGAGCCTGGTGACGTGGCCGTCGGCGTCGAGCGCCGCCTTGGCCGC
CGACACGAAGGCGTCGCGCCGCGAGAAGAACGACGCCTCTAGGGTTTTACGCTGCTCCCCCCAGGTACTGGAGAGCGTGC
GGTCGAAGTCCTCGAGGCGCGTCTCAAGGTTTACGGCGCCCGAGGAACGCAAGAACGGCGAGCGCCAGCGCCGGGAGAGC
GCTCTCGTGGACGCGGCCTCCTTGGCTGGGGCGAAGTGGAGGACGCGCCGGAGAAGCTGATCGGGGAGCGCGGACAGGCG
GTCGTCCCCGGCCATCGTCTACGTCCGCGGCGCGATGCGATCACGATCTGAATCGGATGGGAAG-----AGGAGATATCA
TGCCATGGACTCGGCTCGACCGGTGCTGACCTGCATGTGTGTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATACCTGCCCCAATTGAGGAGCCATTGGATATGGAATCTACT
CTGTCTTTTTTTTTCCTTTTCGAAAAGGGAACACTTACCATCATCCGGCGGATCGCAGCGGCAGCGTCCGTCACCTACCC
TGCGTGACATGCATCCAACTGAGAGTCCGCTACCAGACGACACACACTTTTACAACAGGGGTTATGTTTCTGAAACATAA
ATGCGATGTTGCAATGGTCTACGATGGGTGCACATTTTGCAACAAAACTTCTCTTATGAGATTTTTTTTCCGCAACATGA
CCTCATTTGCAAAAAAAGTCCAACAAAACAGTTGTTGCCAAAAAAAATCTGCAACAAGACCTATATTACAGAAATAATTA
CCTATATCGCAACAGTGAAGACGCGCTCGGCCGCCTGATGCGGCAAATCTGACGGTTGCGACCCGGCTAATCTTTTAAAA
AGATCAGCTGACGGACGCATAGCACGCCCCCGTGAAAAAGGCCTAAAGAGCAACTCTAATGGCTCCCTTAAAACTTCCTG
TATAAACTTTATGTGAATTCTCCGAAACTCTTGAGTGCTAGTGCTAGTTTTGGTCAGTTTCCATAAATTTCTTTCCCTAA
ATCCGTTCTTAATTTATTTTTAATTAAAGAAACAGATAATGGCTAAGGACCCGCCGGTCAGTCACAGGTTTGACGGTCAT
TGTCCAGGGGTGGCGTGGCCGTGCTGCGATGGCCGCCGGCGCTAGGAGGCGTGGCGGCCAAAGGCAGTGTGCTTGGCAGC
GGTGTCGTTCCGTTGTGGGCGGCGGCGGTGCGGCATCGTTCCGACGACGTTCCGGTAGGGTGCGTGATGAAGTTTCAAGC
GGTTTCCACATACAAGAAGATCATCTTCCCGTAAACCTAATGGAAGAAATGGCATAGTTTACAGGGTCCCCTAAAATTAT
GAATGGTATACAAGAATTGCTGGAAATATTTTTTCCCTAACTTCGCATAAATGACAGTTCTTTCATGGATAGTGGAGCTA
TTGGAGTTGCTCTAAGGCCATAAATATCTACTAGGTTTTTTGGCAGAACCTTTTCTATTTGCTCCCCTCCAAAGGCAGAA
CTATCCATTATTTCGTTCTAAAATAGATTTTCCTATTATCACTTTTTGGCTTATTGGCATTTTTGTAACTCGATTATTTT
GTGCCTAATTGAAATATCTGGGTTTTTTGATTTTTTTGCCAGGTTTTTAGGTATCAAAATGCACTTGATTTAACAAATTC
TACATTAGATATCTTTTTTTTCGCAGAAAAACTTCTAATCTATTCATCAACTGTTAAGGTAGTACAAATCACTAGAAGTA
AATATTACATCCAATTCTGTGACCACCTACCGACGACTACAAGGACTGGAGCTAGCCGAGCACGCGCCGCTATCATCGCC
CCTCCCTCACCACAGCCAGGCATACCTTCTTATAGAGGACCGTCGAGAAGTCGTCGTGCTAAGGCCCTACAGGACCAATG
CACCTGGACAGCAACCGCCATCAACCGCCGCAACTGAAGAGAACCGTAGATTGGAAGGATCCAACCTGTAGACACACGAA
CACATATGAATGAAGACCGGATCCATAGGGATCCACCAAAGACTAACGCCGACTGAATACCGCGAGATCCGCAGGAGACA
AACCTCCAATGCCCTACGACGACGCTAGAAGAACAGCGGTGACGGGGGCTGGTGGGGAGAACCTTATTCCATCTTTAGAG
ATCCGTCGTCGCCTCACCTTTCTAAGCTGCTGGACACAAACTCTAACGAAACTTCAAAATATATCCAAAAAATGGAGCCC
TCTTGTCGGCAAAGCTTTGGATCCATGGCGCCTCCTTGGTCCTAAGACCACAGAAGACGAGGCAGACCAGCGGCAGCGCG
GGCAGGAGGCAAAGGAAACCCTAGTTGCTGGCTGTACTTCTTAGGAGTCCTTACCAGCGAAGGGGTATGAGACTCACCTC
GTCAACCTAAGTTATCTTTTTGTTTGCGTTTAGTTTGAATCTAGTTTATTCCCCCCAAAAAAAGTTTGAAGCTAGTTTGA
AATTTCAAGGTTACAAATATTTGGCATCCACCGAAAATTGCCAAAACTTTTAGAAATACATCGCAATTTGACCCTAATTC
TAAGCAATAATAGTACTAGTTTTTTATTTTGGATCCGTATACGTATTTGAGCAGGCAACGCCGCAACATGCTAACTACAG
TTATAACTTGATCTCCTCTGCGCAAGAAACCTAGCTAGCTTGGTAGCCATCTTCGAGATCAGAGATCGCGATCCCCCCCA
CCCAAAAAAAAACTGAGATCGCCGCCTG------------------------------GATGCGTCACCCGCACCAGATC
GCTGGAAGGGAGCGG------------GACGACCGCCTAAGCAGCCTCGGCGACGTCGTGCTTGGCCACGTACTCTCCTT
CCTCGACGCCAAGGAGATCGCGCGCGCCGCCGCGCTCTCGAGGCGATGGCGCGACGTCCTCGCCCTCGTCCACACCGTCT
CCCTGGGCCTG---GAGCAGCCGAAACGGCCCCTCATCGCCGACGAGGAGTACAGCGGG------------AGCGGGTAC
AGGGCCTACGCACCGGCGCCGCTGCCCTTAAACGCCGATGGCCTCGCCGACGTCCTCTTTACCCGCATCCTCCGTCAGGA
CCCCGCCGCCGCCCCGGTGCCCCTGCGCGCACTCCGCGCGCTCGTTTGCA------TGGGATACGAGCCCGAGGACGAGA
CGACGATGGACCAGTGCGTCTCTTACGCCCTGGAGCACGCCGGCCCCGAGTTCGAGCTCGAGCTCGACCTCCGCTTCGAC
CCAGACAAAACCATCTGCAAGTACCCCAATCCTGCCGCCGAAGATCATTCACTCTGTGCGCTACAGAGA------AAGCC
TCCCCAGACTGACGCCGAAGACCATTCACTCCGTGCGCCACATGACGACGGCGGCGACGAGGACGATGATGGCGACGATG
TCGGCTCCAGTTCTGAGGAAAATTTTGGTGGAGATCAAGAATACACCCTCCCGAGGAGGCGCATCTCCTACGCGGAGCGA
CAGTACACCGTCCCCTGGGGACTCTTCGCCTGCCCGGCGCTGCGATCGCTCCGCCTTGGCTGGTGCAGACTCGCCCCTCC
GGCGGCCTTCAGCATGCCGTGGCTCCAGGCGCTCCGTCTCACCCACGTCCCTGATGAGGAGGAGCACGTGCAAAGGCTCG
TCTCTGCCTGCACCCACATCATTGATCTGACGCTCGAGGCTTGTGGAACGGTGACCACGCTCTCGCTCCTTGGCAACACG
CGCCTCCGCAGCCTCGCCCTCCGGTGCTGCCGCAAGCTGGCCAATGTCTCCGTCGACGCGACAGAGCTCCGCTCCTTCGA
GTACCGCGGCGCCGTCCCCAGCGACTCCTTCCTCACTATGGTTGGCAGCTCGCCGTCCATCACGTCGTGCAAGATCGACA
TATGTGCCATCTGCATTGGGGAGGCCACCTCACAAGAGGACCTCGGCAAGCTTGGTTCGTTCCTACAGCAGTTCGCATCG
ACCACGAAACACCTCCACTTATCGTGCGCCCTAATGTGCTCATGCTTCGTGCGGCTCCCGGCGTTCACGAGCCTTTGTCA
CCTCCAGCTGATTGGACGTGTGCCGCGCAGCGGTGATGACCATGCCGCCGCAGCTGTTGCGGTGAGCAAAATCCTCCGGC
AAGCCCCAAACCTAGAGACGTTGTCCCTGCTCTTCGAAATAAAGCGTC---------------ATGACCCCAACAAGCAT
GACTACCGTGACCACAACAAGGGGCAGCTCCTCGATGCTCACCTCCTCCACTACAACAAGTACGACACTCTAGACATGCC
GGCGG---GCGTGGTTGTGCCGACGTGCCTCGGGAGTCGGGTGAGGAAGATCAACCTGTTGCATTACCAAGGCGGAAGAG
CGCAGAGGATGCTGGTCAGGTTCTTGGTCTGCAACGCTAAAGTTCTTGAGAAGCTATATTGTGGATTCGCCGAGGGGCCG
CTGTGGATTCAGACCAAACTGAAGCGTGAGATGGAAAACTGGGCGGTGAACGAGACAACTAGCAAGGAGTTCCGTTGATC
GGTTGATGGATGCCTGCGTGCCTTTGCAATTGCAAAACAACTTGTGATGGATTCGTCATACTTTAGTGAATGGTGAAGTA
TTTTCTAAATAT--------------------------------------------------------------------
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>chr3B_1
AGCACGCGGAGGGTCTCCGACGGCAGGAAGCGGAGGCTGAGCATGTACTCGCCTACCACTTTCCGGGCGATCTCCTTCTC
CGGCTCATAGTAGGTGTCGTTGC---------AGCCTTCAACGGCGAGCCGGAGGACTTGGATGTGTTGCGCCGCCGGGT
GGGAGAGAAGCGTGGCGATCACGCTTTGGTCCTGGTCCGGCGACGAGCACAACCCGTCGCTGTTGTATTGCAGGAACCTG
CGGTCGACGCCAAACTCGAACTTCACGCGCAGGGTAAGCGTCGTGATGTGGTCGGCGGCGGCGAGCGCCGCCTGGGCCGC
GGAGACGAAGGCGTCGCGCCGGAAGAAGAACGTGGCCTCCAGGCTCTTGCGCTCCTCTCCCCAGCTTTGGTAGAGTAGTT
CTATGCG---CTCGACGTGCGTCTCGAGGTTTACGGCCCCCGAGGAGCGCAAGAGCGGCGAGCGCCAGCGCCGGGAGAGC
GCTCTCGTGGAGGCGGCCTCCTTGGCCGGGGCGAAGTGGAGGATGCGGCGGAGAAGCTGGTCGGGGAGCGCGGACAGGCG
GTCGTCGACGGCCATCGTCCACGTCTGCGGCGCGATGCGATCACGTTCTCGATGGGATGGGATG-----GGGAATTAGGG
TTTAGGGATCGGATCGGTACGTAGGGGAGATATACCTTTTT---------------------------------------
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-------------------------------TTCTTGCCAAAGAAAAAAAA-----------------------------
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--------------------------------ATCCGTTTACGTATTTGGGCAGGCAACGACGTAA-------ACGTCAG
TTATGAACCGATCTCTAGTCCTCTACACGG-----------------CATCTCCGAGATT--------------------
------------CTGAGATCGCCGCCGCCAGCCGCCGTGTCGAACGGGAGCGCGACGAGATGAGTCACTCCCACCAGATC
GTCGAACTGGAGCGCGAGCGCGAGCGCGACGACCGTCTCAGCAGTCTCAGCGATGTCGTGCTTGGCCATATCCTCTCCTT
CCTCGACGCCGACGAGATCGGCCGTGCCGCGGCGCTCTCAAGGCGGTGGCGCGACGTCCTGGCCATCGTCCACACCGTCT
CCCTGGACATGGATGAGCAGCCGAAACGGCCCATCATCTACGACGTGGTCGACGATGACTTGATCTATTCCACCGAGTAC
ATCAATCACCCGCCGGCGCCGCTGTCCTCAATCGTCA---------CCGGCGCCCTCTTTGGCCGCAGCCGCCGCCCGGC
CCCCGCGCCCGGCCCGGTGCCCCTGCGTGCGCTCCGCGTTTGCCTGGGAGTGAGATTGGGATACAATCCCGACCAAAAGA
CCACGGTGGACCAGTGGGTTACTTACGCCCTGAAGCATGCCGGCCCCGAC------CTCGAGCTCGACCTCCGCCTCGGC
CGAGACC---CCATCTGCAAGCACCCCGACCGGGCCGCCCACGCTAGGCCATACGAGGTTAAAGCCGTTGGCTGGAAGCC
TCCGGAGACAAACGCCGACGACCATTCACCCCTTGGGACAGACGACGAC------------------GATGGTGACGATG
TTGGCTCCAGTTCTGAAGAAAATTTTCGTGGATACG------------------------------------------GA
GAGTACACCGTCCCATGGGGGGGTTTCTCCTGCCCCGCGCTGCGATCGCTCCGCCTTGGCGCTTGCAGGATCTCCCCGCC
GGCGGCCCTCAGCATGCCATGGCTCGAGGCGCTCCGCCTCACCCAGGTCCCCGACGAGGAGGAGCACGTGCAAAGGCTCA
TCTTCGCCTGCCCCCACCTCGTGGACCTGACTCTCGAGGCTTGCGGAACGGTGACCACGCTCTCGCTCCTCGGCAACACG
CGCCTCGGCAGCCTCGCCCTCCGGTGCTGCCATAAATTAGCCACCGTTGTCATCAACAAGCCAGAGCTCCGCTCCTTTGA
GTACCGCGGTGCCGTCCCTGGCCACTCCTTCCTCACCATGGTCGGCGGCTCGCCATCTATCATGTCGTTCAAGGTCGACA
TCCGTGCGATCTGTGTTGGGGAGGCCACCTCAGAAGAGGAGCTCAGCAAGCTCGATTCCTTCGTACAGCAGTTCGTGTCG
ACCACGAAACACCTCCACTTATCATGTGCCTTCATGGGCTCATCCTTCGCGCGGCTCCCGGCATTCACGAGCCTCCGCCA
CCTTCAACTGATCGGACACGTGCCGCGCGACAGCGACGACCCCGCCGCAGCAGCTGCCGCGACAAGCAAAATCCTTTGGA
AAACCCCGAACCTGGAAACATTGTCCTTGTTATTCGAAGTAAAGCGTCGCAATCCCAATAAGTACGACCCCAAGGAGTAC
GACCGCGGCGATCGCAGCGAGGGGCAGCTCCTCGATGCTCACCTCCTCAACTGCAACAAGTACGACAGCCTCGACGTTCC
GGCTTCGAGCGTGACCGTGCCGGCCTGCCTCAGTAGTCGGGTGAGGAAGATCAACCTGTTGCATTACCAAGGCGGAAGAG
CGCAGAGGATGCTGGTCAGGTTCTTGGTCCGCAACACTGAAGTTCTTGAGAAGCTTTACTGTGGATTCGCCGAGGGGCCG
TTGTGGATTCAGATGGAACTTAAGCGCGAGATCGAACGATGGGCGGTGAACGGGAAAACTAGCACGGAGTTCCGTTGATC
GGGTGATGGATGCTTCTCTGCCTTTGCAATTGCGGTACAACTTCTGATGGATTCGTGATAATTTAGTAAATGTTGAACAT
AATTCTCTAAACATTCGTCTCAATCGATTAAGACATAACCAAGTCTCGGTCGGCTAATACTTAACCAAGTCTTGGTCCAT
GCTATATCCGTGAGATCTTACTTTGAGATTCGTGCAATTTCTTTCTTTCTTTTTCTCTCTTGCATGCTATGTCACTTGAG
TGCGACTTGATTAAATCTCAGTCGACTGAGACCTAGTCAAACCCGTCATTTATTGATTGTCTAGAATGTCTACAGGAATT
GCAGT--TATATATAGTACGTATATATCATGCGGATTGCCCCTGCCCCTGCCCCTAGCCCCATCTACATCTAAAGATAAA
GCAATCC-------ACATGTTAGGGTTCGATATACCTGTGAAAACAACTGAAGATCCAAGATAATTGCCGATGGATATGA
TCTTGGGTTATCCTAAAACATCTTCTCTCCACGTTCAACTGCAGCCCCGCCCATGAGATCAAATTCACAGGCGCAAAAAC
CACATCAAAGGGAGCACTGGGATGCTTAAACTCAAAGGTGCCACGATTTGACAGTTCCAAATGCCTCAACAAATAGCTAG
CAGCAAGGCCAGTAGTATAAAACTT-TCACCATCAGGTAAAAAGATGTAGTATCAAACTTTTCACGTTCATGTCCTTCTG
CTCTCATTGCTGGCTGTTTGTTGTTGGATATGCTGTACGAAAGACGAATATAAGAAAACGTCCTCAGTAGTGAATTGTTG
GCTCTCAACTATTTCATGACATTCAGTGGTCGATCATAGGCATTACTTTACTGCTACATCATCTCTTATAGTGTCTATAT
CAGGGTTAAAAAATTCAGTGAAATTTCGCATATTTCAATGGGGTTCAAAATATTTTTAACCTCAAAATTTTGATGCAGAT
TCAAACTTATTTCAAAGTAAAGTTAAATTATGTTAAAATTCATAAAATTAAGTGAAATTTCAAATCTCAAAATCCGGAAT
AATTTTTGAAATATGGGAAATTTCCAAAATTTCGCATATTTCAGTGAGTTCCGAAACTATTTAGTTTCCGAAATTAAAAA
CCTTGGTCTATAGTATTCCTGCTGCATATTAATTTGAATTCTGCATATGTAGGTAGTACACTAGTAAATAAACATACATA
CATAC---------------------------------------------------------------------------
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>SNPs
--------------------------S-------------------------------------S--------------S
S-----S-------------S------------------S-------------------------S--------------
---------------S----------------------S-----------------------S-----------------
-S------------------------------------------------------S--S--------------S-----
-----------------------S------------------------------------------------S---S---
----------S-----------------S---------------------------------------------------
--------------------------------------S----S------------------------------------
----------------S--------------S--------------------------------SSSSS-----------
------------------------------S-------------------------------------------------
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------------------------------------S-S-----------------------------------------
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----------------------------------S--------------------------------S----------S-
-----------------S-----S--------------------------------SSSSSSSS----------------
-----------------------------------SS-----------------------S-------------------
--------------------------------------S--------------------------------------S--
---------------------------------------------------------S----------------------
------------------S--------S--------------------------------SS--S---------------
--S----------------S-SS-------S-------------------------------------------------
---------------------------------------------------------------S---S------------
----------------------------------------------------------------S---------------
--------------S--------------S-------------------S---S--------------SS--S-------
---------S----------------------S---------------S-------------------------------
----------S-S-------------------------------------------------------------------
-------------SS-----------------------------------S-----------------------------
------------------------------------------S-------------------------------------
-S------------------------------------------------------------------------------
-S----------------------------------------S-----------------S-------------------
S-----------------S---S-------S---------S---------------------------------------
--------S---------------------------------------S---------------------S---------
--S--------------------S--------S-----------------S--S-----S------------------S-
------------------------S-----------------------------------------------------S-
----S---------S----------------S--------------------------------------SS-S------
-------S------------------------------------------------------------------------
--S-------------------S-------------------S-----------------------------S-----S-
---------S-------S--------------------------------------------------------------
-------------S------------------S-----------S--------------S------------------S-
-------------------------------------S---------------------------------S--------
---------------S-S----S--------------------------------------------S------------
-S-----S-S-----------S------------SS------------S----S------------S------------S
--S------S----------S---------------S-------------------------------------------
S----SS------------S-----------S-----------------------SS---------S-------------
------SSSSSSSS-------------S----------------------------------------------------
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--------------------------------------------------------S--------S--S-----------
-------------------------S------------S--------------S----------------S---------
----S---------------------------S---------------------------------------------S-
--S----------------------------------------------------------------S------------
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---------------------------------------S----------------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_628
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------------------------------------------------TCGATGGGATGGGATGGGAT------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_5134
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGGAACTGAAGCGCGAGATT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_4631
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TCGGTTCCTTCGTACAGCAC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_6466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CACACTTTGCACAGA
CTGGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
