Multiple sequence alignment - TraesCS3D01G432800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G432800 chr3D 100.000 2870 0 0 1 2870 546322877 546320008 0.000000e+00 5301.0
1 TraesCS3D01G432800 chr3D 97.619 42 1 0 2388 2429 549330682 549330723 3.970000e-09 73.1
2 TraesCS3D01G432800 chr3D 93.333 45 3 0 2390 2434 182644591 182644635 1.850000e-07 67.6
3 TraesCS3D01G432800 chr3A 92.220 2635 138 22 80 2667 683072550 683069936 0.000000e+00 3668.0
4 TraesCS3D01G432800 chr3A 87.349 166 16 2 2710 2870 683069729 683069564 4.880000e-43 185.0
5 TraesCS3D01G432800 chr3B 92.614 2437 106 24 12 2389 723277488 723275067 0.000000e+00 3435.0
6 TraesCS3D01G432800 chr3B 89.544 373 37 2 2499 2870 723274940 723274569 3.350000e-129 472.0
7 TraesCS3D01G432800 chr3B 93.750 48 3 0 2387 2434 828520794 828520747 3.970000e-09 73.1
8 TraesCS3D01G432800 chr7A 97.561 41 1 0 2389 2429 115203596 115203636 1.430000e-08 71.3
9 TraesCS3D01G432800 chr7A 93.182 44 3 0 2391 2434 680020400 680020357 6.640000e-07 65.8
10 TraesCS3D01G432800 chr7A 91.667 48 3 1 2388 2434 698141591 698141638 6.640000e-07 65.8
11 TraesCS3D01G432800 chr2B 95.122 41 2 0 204 244 356513669 356513709 6.640000e-07 65.8
12 TraesCS3D01G432800 chr2A 89.796 49 5 0 2385 2433 48471511 48471463 2.390000e-06 63.9
13 TraesCS3D01G432800 chrUn 89.796 49 3 2 2378 2425 232947720 232947673 8.590000e-06 62.1
14 TraesCS3D01G432800 chrUn 89.796 49 3 2 2378 2425 232958637 232958590 8.590000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G432800 chr3D 546320008 546322877 2869 True 5301.0 5301 100.0000 1 2870 1 chr3D.!!$R1 2869
1 TraesCS3D01G432800 chr3A 683069564 683072550 2986 True 1926.5 3668 89.7845 80 2870 2 chr3A.!!$R1 2790
2 TraesCS3D01G432800 chr3B 723274569 723277488 2919 True 1953.5 3435 91.0790 12 2870 2 chr3B.!!$R2 2858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 826 0.240411 ACAAGTCCTCGAGTACGCAC 59.760 55.0 12.31 0.0 39.58 5.34 F
1698 1752 0.819259 TTTGCCGATATGAGCTGCCC 60.819 55.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1866 0.529992 GCCATAGGAACGAGAACGGG 60.530 60.0 0.0 0.0 44.46 5.28 R
2559 2679 0.530870 GACTATCACAAGAGCGGGCC 60.531 60.0 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.339141 CCTTCCTCCTTGCAGAGTAAAC 58.661 50.000 2.63 0.00 31.53 2.01
67 68 3.244561 CCTTCCTCCTTGCAGAGTAAACA 60.245 47.826 2.63 0.00 31.53 2.83
75 76 2.858745 TGCAGAGTAAACAAGGGGTTC 58.141 47.619 0.00 0.00 39.29 3.62
76 77 2.160205 GCAGAGTAAACAAGGGGTTCC 58.840 52.381 0.00 0.00 39.29 3.62
124 139 1.496060 ATTGCCCGTGGATCTCTGTA 58.504 50.000 0.00 0.00 0.00 2.74
128 143 1.271102 GCCCGTGGATCTCTGTATCTC 59.729 57.143 0.00 0.00 0.00 2.75
140 155 9.187455 GGATCTCTGTATCTCGTTTAATTCTTC 57.813 37.037 0.00 0.00 0.00 2.87
246 261 5.499139 TGATTTGACACACTGGAAACTTC 57.501 39.130 0.00 0.00 0.00 3.01
282 297 8.918658 CGTGTCAAAATTGAAATCTTGATCAAT 58.081 29.630 8.96 0.00 45.61 2.57
327 342 8.028354 TGCCAAATTGATGTTTATGTACAAGAG 58.972 33.333 0.00 0.00 0.00 2.85
339 354 9.046296 GTTTATGTACAAGAGATATGGACTTGG 57.954 37.037 0.00 0.00 43.28 3.61
347 362 6.472686 AGAGATATGGACTTGGTCTGTAAC 57.527 41.667 0.00 0.00 32.47 2.50
359 374 5.147330 TGGTCTGTAACTTACATCTGTGG 57.853 43.478 2.02 0.00 38.15 4.17
360 375 4.591498 TGGTCTGTAACTTACATCTGTGGT 59.409 41.667 2.02 0.00 38.15 4.16
477 524 5.361571 AGTTTTTCTTTACACGGGAAATGGT 59.638 36.000 0.00 0.00 0.00 3.55
510 557 6.071616 GGTTTCATCTGTGGCCAGTAAAATAA 60.072 38.462 5.11 0.00 39.82 1.40
576 624 3.467803 CAGGGCCTTAGTGTAGTATTGC 58.532 50.000 1.32 0.00 0.00 3.56
584 632 3.981071 AGTGTAGTATTGCCAGCTGAA 57.019 42.857 17.39 2.11 0.00 3.02
626 674 3.833559 ATCCCTTTCAGTTGGTTGGAT 57.166 42.857 0.00 0.00 0.00 3.41
730 779 8.768955 CAAGGTAAAATGATCTAGACATAGTGC 58.231 37.037 0.00 0.00 0.00 4.40
759 808 8.687824 ATTATAAACTGCTGCACAATGTTAAC 57.312 30.769 0.00 0.00 0.00 2.01
777 826 0.240411 ACAAGTCCTCGAGTACGCAC 59.760 55.000 12.31 0.00 39.58 5.34
780 829 1.245732 AGTCCTCGAGTACGCACTTT 58.754 50.000 12.31 0.00 39.58 2.66
789 838 5.162794 TCGAGTACGCACTTTGCTTATTTA 58.837 37.500 0.00 0.00 42.25 1.40
808 857 9.482627 CTTATTTAGACTGATCTTGGACCATAC 57.517 37.037 0.00 0.00 36.29 2.39
809 858 5.515797 TTAGACTGATCTTGGACCATACG 57.484 43.478 0.00 0.00 36.29 3.06
813 862 3.641436 ACTGATCTTGGACCATACGCATA 59.359 43.478 0.00 0.00 0.00 3.14
815 864 3.641436 TGATCTTGGACCATACGCATACT 59.359 43.478 0.00 0.00 0.00 2.12
816 865 3.452755 TCTTGGACCATACGCATACTG 57.547 47.619 0.00 0.00 0.00 2.74
817 866 2.764010 TCTTGGACCATACGCATACTGT 59.236 45.455 0.00 0.00 0.00 3.55
818 867 2.882927 TGGACCATACGCATACTGTC 57.117 50.000 0.00 0.00 0.00 3.51
822 876 4.189231 GGACCATACGCATACTGTCTTTT 58.811 43.478 0.00 0.00 0.00 2.27
831 885 6.762108 ACGCATACTGTCTTTTATCTTTTCG 58.238 36.000 0.00 0.00 0.00 3.46
838 892 8.779354 ACTGTCTTTTATCTTTTCGCTTATCT 57.221 30.769 0.00 0.00 0.00 1.98
869 923 3.799281 AATTGTGTGGAAGGTTGTGTG 57.201 42.857 0.00 0.00 0.00 3.82
897 951 7.093354 CAGTCTAGTGTGATTGTGTAAGTCAT 58.907 38.462 0.00 0.00 0.00 3.06
988 1042 4.582701 TTGGTTTATTTGTGAGGCAGTG 57.417 40.909 0.00 0.00 0.00 3.66
1283 1337 5.736951 AGCATATTATCTGACCTGGAGAC 57.263 43.478 0.00 0.00 0.00 3.36
1352 1406 3.006752 GGTCATCTCTCAGAGGCCAATAG 59.993 52.174 5.01 0.00 0.00 1.73
1437 1491 1.341080 ACTTTGTTGGGCCTGGATTG 58.659 50.000 4.53 0.00 0.00 2.67
1659 1713 3.827008 TGCATACTTCCTTGGCTAGAG 57.173 47.619 0.00 0.00 0.00 2.43
1698 1752 0.819259 TTTGCCGATATGAGCTGCCC 60.819 55.000 0.00 0.00 0.00 5.36
1812 1866 0.108567 GGCGTCAGAGGAGAAGGAAC 60.109 60.000 0.00 0.00 0.00 3.62
1876 1930 4.799428 GCACTGGTTCTCGTTAGATTAGTC 59.201 45.833 0.00 0.00 0.00 2.59
1910 1964 6.183360 TGGTTGGAGTTCACAATGCTATTTTT 60.183 34.615 0.00 0.00 0.00 1.94
1932 1986 7.692460 TTTAGTGAAGATGCTGATCAAATGT 57.308 32.000 0.00 0.00 0.00 2.71
1947 2001 5.764487 TCAAATGTGCTTTATGTGTGTCA 57.236 34.783 0.00 0.00 0.00 3.58
2171 2225 6.127591 TGCTGTATTGGTTGTTTTGTAGTTGT 60.128 34.615 0.00 0.00 0.00 3.32
2241 2295 6.765512 GGAATTTTTGGAACATGGTTTCAAGA 59.234 34.615 0.00 0.00 39.30 3.02
2246 2300 2.029918 GGAACATGGTTTCAAGAGCACC 60.030 50.000 0.00 0.00 0.00 5.01
2321 2391 6.373774 TGTTGATTGTTGCACCTTGAAATTTT 59.626 30.769 0.00 0.00 0.00 1.82
2391 2463 4.016444 CAAACACTTGCCCACATATAGGT 58.984 43.478 0.00 0.00 0.00 3.08
2399 2471 2.832733 GCCCACATATAGGTACTCCCTC 59.167 54.545 0.00 0.00 44.81 4.30
2401 2473 3.181410 CCCACATATAGGTACTCCCTCCA 60.181 52.174 0.00 0.00 44.81 3.86
2405 2477 4.264895 ACATATAGGTACTCCCTCCATCCC 60.265 50.000 0.00 0.00 44.81 3.85
2411 2483 4.363217 AGGTACTCCCTCCATCCCATAATA 59.637 45.833 0.00 0.00 40.71 0.98
2415 2487 7.404980 GGTACTCCCTCCATCCCATAATATAAA 59.595 40.741 0.00 0.00 0.00 1.40
2418 2490 6.731467 TCCCTCCATCCCATAATATAAAAGC 58.269 40.000 0.00 0.00 0.00 3.51
2421 2493 6.316390 CCTCCATCCCATAATATAAAAGCGTC 59.684 42.308 0.00 0.00 0.00 5.19
2442 2514 8.033038 AGCGTCTTTGACAGTAGTTGATATTAA 58.967 33.333 0.00 0.00 32.09 1.40
2462 2534 7.587037 ATTAATGGGTTGACATGGTATTGAG 57.413 36.000 0.00 0.00 0.00 3.02
2463 2535 4.591321 ATGGGTTGACATGGTATTGAGT 57.409 40.909 0.00 0.00 0.00 3.41
2464 2536 3.684908 TGGGTTGACATGGTATTGAGTG 58.315 45.455 0.00 0.00 0.00 3.51
2465 2537 3.073798 TGGGTTGACATGGTATTGAGTGT 59.926 43.478 0.00 0.00 0.00 3.55
2466 2538 4.079253 GGGTTGACATGGTATTGAGTGTT 58.921 43.478 0.00 0.00 0.00 3.32
2467 2539 4.082787 GGGTTGACATGGTATTGAGTGTTG 60.083 45.833 0.00 0.00 0.00 3.33
2468 2540 4.759693 GGTTGACATGGTATTGAGTGTTGA 59.240 41.667 0.00 0.00 0.00 3.18
2514 2586 3.982058 GCTAAGATTACGTTGGGATCTCG 59.018 47.826 0.00 0.00 30.19 4.04
2581 2701 1.414181 CCCGCTCTTGTGATAGTCCAT 59.586 52.381 0.00 0.00 0.00 3.41
2594 2714 1.043116 AGTCCATCGGCTTCCATCGA 61.043 55.000 0.00 0.00 39.79 3.59
2633 2754 4.798682 CGGCCACCCCCTCCTACT 62.799 72.222 2.24 0.00 0.00 2.57
2634 2755 2.286197 GGCCACCCCCTCCTACTT 60.286 66.667 0.00 0.00 0.00 2.24
2637 2758 0.619543 GCCACCCCCTCCTACTTGTA 60.620 60.000 0.00 0.00 0.00 2.41
2651 2772 1.697982 ACTTGTACTTCCCACCCTCAC 59.302 52.381 0.00 0.00 0.00 3.51
2656 2777 1.987855 CTTCCCACCCTCACCGCTA 60.988 63.158 0.00 0.00 0.00 4.26
2662 2783 3.083997 CCCTCACCGCTAGCCCTT 61.084 66.667 9.66 0.00 0.00 3.95
2684 2805 4.475444 CCCTCCCCGCCTCAGGTA 62.475 72.222 0.00 0.00 0.00 3.08
2685 2806 3.155167 CCTCCCCGCCTCAGGTAC 61.155 72.222 0.00 0.00 0.00 3.34
2686 2807 3.155167 CTCCCCGCCTCAGGTACC 61.155 72.222 2.73 2.73 0.00 3.34
2718 3003 3.455910 CCTCCCCATTCAACTATCTGTGA 59.544 47.826 0.00 0.00 0.00 3.58
2720 3005 5.398353 CCTCCCCATTCAACTATCTGTGATT 60.398 44.000 0.00 0.00 0.00 2.57
2732 3017 4.101790 GTGATTGTGGGTGCGCGG 62.102 66.667 8.83 0.00 0.00 6.46
2744 3029 4.010414 GCGCGGCTGCATGAGATC 62.010 66.667 19.50 0.00 42.97 2.75
2764 3049 2.743179 GGATTGGGAGGTCGACCCC 61.743 68.421 30.82 27.86 46.21 4.95
2797 3082 1.003718 GACGCACCACCTTTAGGCT 60.004 57.895 0.00 0.00 39.32 4.58
2806 3092 3.181423 ACCACCTTTAGGCTTTCCATTGA 60.181 43.478 0.00 0.00 39.32 2.57
2865 3155 6.339587 TCTTCTTGAAGTTGGTTGTTTTGT 57.660 33.333 9.80 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.423446 CGGCAAGGCTAGGCTAGG 59.577 66.667 20.55 15.61 0.00 3.02
7 8 2.280457 GCGGCAAGGCTAGGCTAG 60.280 66.667 20.55 17.33 0.00 3.42
8 9 3.861797 GGCGGCAAGGCTAGGCTA 61.862 66.667 20.55 0.00 42.90 3.93
66 67 2.356667 GGCCTCAGGAACCCCTTG 59.643 66.667 0.00 0.00 42.02 3.61
67 68 2.941583 GGGCCTCAGGAACCCCTT 60.942 66.667 0.84 0.00 42.02 3.95
75 76 0.407918 TTTTACCTTGGGGCCTCAGG 59.592 55.000 16.95 16.95 35.63 3.86
76 77 1.075536 ACTTTTACCTTGGGGCCTCAG 59.924 52.381 4.89 0.00 35.63 3.35
77 78 1.074889 GACTTTTACCTTGGGGCCTCA 59.925 52.381 0.00 0.00 35.63 3.86
124 139 9.751542 CCACATACTAGAAGAATTAAACGAGAT 57.248 33.333 0.00 0.00 0.00 2.75
128 143 7.534085 TGCCACATACTAGAAGAATTAAACG 57.466 36.000 0.00 0.00 0.00 3.60
173 188 3.855858 TGCAAGAAAGGTTTGTTTGTCC 58.144 40.909 0.00 0.00 0.00 4.02
174 189 5.108517 TGATGCAAGAAAGGTTTGTTTGTC 58.891 37.500 0.00 0.00 0.00 3.18
246 261 1.301423 TTTTGACACGGGAGGAAACG 58.699 50.000 0.00 0.00 0.00 3.60
284 299 9.206870 CAATTTGGCACACATAAACTAGAAATT 57.793 29.630 0.00 0.00 39.29 1.82
302 317 8.243426 TCTCTTGTACATAAACATCAATTTGGC 58.757 33.333 0.00 0.00 0.00 4.52
327 342 7.553334 TGTAAGTTACAGACCAAGTCCATATC 58.447 38.462 11.75 0.00 34.06 1.63
334 349 6.223852 CACAGATGTAAGTTACAGACCAAGT 58.776 40.000 19.87 10.10 42.77 3.16
339 354 5.405571 CACACCACAGATGTAAGTTACAGAC 59.594 44.000 19.87 15.63 42.77 3.51
347 362 3.742882 CAGTCACACACCACAGATGTAAG 59.257 47.826 0.00 0.00 0.00 2.34
477 524 2.226330 CACAGATGAAACCACCGGAAA 58.774 47.619 9.46 0.00 0.00 3.13
546 594 2.107204 CACTAAGGCCCTGCTTGGATAT 59.893 50.000 0.00 0.00 38.35 1.63
603 651 3.655777 TCCAACCAACTGAAAGGGATACT 59.344 43.478 0.00 0.00 39.30 2.12
626 674 3.306088 GGACCTTCACAGTCGAAGATCAA 60.306 47.826 12.00 0.00 44.32 2.57
730 779 7.475015 ACATTGTGCAGCAGTTTATAATACTG 58.525 34.615 16.84 16.84 44.55 2.74
759 808 0.522180 AGTGCGTACTCGAGGACTTG 59.478 55.000 24.96 11.97 39.71 3.16
777 826 8.394121 GTCCAAGATCAGTCTAAATAAGCAAAG 58.606 37.037 0.00 0.00 33.30 2.77
780 829 6.070251 TGGTCCAAGATCAGTCTAAATAAGCA 60.070 38.462 0.00 0.00 33.30 3.91
789 838 2.101582 GCGTATGGTCCAAGATCAGTCT 59.898 50.000 0.00 0.00 35.82 3.24
808 857 5.672856 GCGAAAAGATAAAAGACAGTATGCG 59.327 40.000 0.00 0.00 42.53 4.73
809 858 6.776094 AGCGAAAAGATAAAAGACAGTATGC 58.224 36.000 0.00 0.00 42.53 3.14
813 862 8.779354 AGATAAGCGAAAAGATAAAAGACAGT 57.221 30.769 0.00 0.00 0.00 3.55
822 876 7.732025 TCCCAACATAGATAAGCGAAAAGATA 58.268 34.615 0.00 0.00 0.00 1.98
831 885 8.292448 CACACAATTATCCCAACATAGATAAGC 58.708 37.037 0.00 0.00 38.12 3.09
838 892 5.890985 CCTTCCACACAATTATCCCAACATA 59.109 40.000 0.00 0.00 0.00 2.29
869 923 3.393800 ACACAATCACACTAGACTGCAC 58.606 45.455 0.00 0.00 0.00 4.57
897 951 4.757594 AGCTCAGCAACAAATTTCAAACA 58.242 34.783 0.00 0.00 0.00 2.83
1283 1337 0.897863 TGGCCCTGAACCAAATTCCG 60.898 55.000 0.00 0.00 36.36 4.30
1437 1491 4.332268 GTCAACTGCTCAATCAGATCTTCC 59.668 45.833 0.00 0.00 37.51 3.46
1659 1713 1.956477 ACAGGACAGGAATTGTGTTGC 59.044 47.619 0.00 0.00 41.05 4.17
1698 1752 1.671261 GCACCACTAGAGCTCTGTGTG 60.671 57.143 29.32 29.32 34.17 3.82
1791 1845 2.492090 CTTCTCCTCTGACGCCCG 59.508 66.667 0.00 0.00 0.00 6.13
1812 1866 0.529992 GCCATAGGAACGAGAACGGG 60.530 60.000 0.00 0.00 44.46 5.28
1876 1930 2.105821 TGAACTCCAACCAGGTAACCAG 59.894 50.000 0.00 0.00 39.02 4.00
1910 1964 5.065602 GCACATTTGATCAGCATCTTCACTA 59.934 40.000 0.00 0.00 0.00 2.74
1932 1986 3.106242 AGACGTGACACACATAAAGCA 57.894 42.857 6.37 0.00 33.40 3.91
1947 2001 6.646267 ACATTACATATTGGGTGTAAGACGT 58.354 36.000 0.00 0.00 43.10 4.34
2043 2097 3.905784 AGCAAACAAAATCAGCTGCTAC 58.094 40.909 9.47 0.00 38.32 3.58
2241 2295 1.636148 TACTGTTCTAACGGGGTGCT 58.364 50.000 6.62 0.00 39.62 4.40
2288 2346 4.180057 GTGCAACAATCAACAGGTTTTGA 58.820 39.130 0.00 0.00 36.98 2.69
2289 2347 3.309410 GGTGCAACAATCAACAGGTTTTG 59.691 43.478 0.00 0.00 39.98 2.44
2290 2348 3.197549 AGGTGCAACAATCAACAGGTTTT 59.802 39.130 3.64 0.00 39.98 2.43
2362 2432 1.305201 GGGCAAGTGTTTGTCTTCGA 58.695 50.000 0.00 0.00 38.93 3.71
2391 2463 8.998957 TTTTATATTATGGGATGGAGGGAGTA 57.001 34.615 0.00 0.00 0.00 2.59
2399 2471 7.687941 AAGACGCTTTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
2401 2473 8.784043 GTCAAAGACGCTTTTATATTATGGGAT 58.216 33.333 2.65 0.00 0.00 3.85
2411 2483 6.704493 TCAACTACTGTCAAAGACGCTTTTAT 59.296 34.615 2.65 0.00 34.95 1.40
2415 2487 4.054780 TCAACTACTGTCAAAGACGCTT 57.945 40.909 0.00 0.00 34.95 4.68
2421 2493 9.396022 ACCCATTAATATCAACTACTGTCAAAG 57.604 33.333 0.00 0.00 0.00 2.77
2442 2514 4.263905 ACACTCAATACCATGTCAACCCAT 60.264 41.667 0.00 0.00 0.00 4.00
2497 2569 4.564940 AGTACGAGATCCCAACGTAATC 57.435 45.455 11.50 0.00 42.50 1.75
2504 2576 3.657398 TCCACTAGTACGAGATCCCAA 57.343 47.619 10.22 0.00 0.00 4.12
2514 2586 2.550606 CAGCTCGAGGATCCACTAGTAC 59.449 54.545 15.82 0.00 0.00 2.73
2559 2679 0.530870 GACTATCACAAGAGCGGGCC 60.531 60.000 0.00 0.00 0.00 5.80
2581 2701 2.488355 GACGTCGATGGAAGCCGA 59.512 61.111 9.90 0.00 0.00 5.54
2594 2714 4.498520 CATCTGAGCGGCCGACGT 62.499 66.667 33.48 12.93 46.52 4.34
2633 2754 1.061546 GGTGAGGGTGGGAAGTACAA 58.938 55.000 0.00 0.00 0.00 2.41
2634 2755 1.189524 CGGTGAGGGTGGGAAGTACA 61.190 60.000 0.00 0.00 0.00 2.90
2637 2758 2.741878 TAGCGGTGAGGGTGGGAAGT 62.742 60.000 0.00 0.00 0.00 3.01
2651 2772 3.551407 GGAGGGAAGGGCTAGCGG 61.551 72.222 9.00 0.00 0.00 5.52
2656 2777 4.439901 GGGAGGGAGGGAAGGGCT 62.440 72.222 0.00 0.00 0.00 5.19
2705 2826 4.578871 CACCCACAATCACAGATAGTTGA 58.421 43.478 0.00 0.00 0.00 3.18
2732 3017 1.880675 CCAATCCAGATCTCATGCAGC 59.119 52.381 0.00 0.00 0.00 5.25
2740 3025 1.062886 TCGACCTCCCAATCCAGATCT 60.063 52.381 0.00 0.00 0.00 2.75
2741 3026 1.069358 GTCGACCTCCCAATCCAGATC 59.931 57.143 3.51 0.00 0.00 2.75
2744 3029 1.522569 GGTCGACCTCCCAATCCAG 59.477 63.158 27.64 0.00 0.00 3.86
2764 3049 2.187946 GTCCTCTGATGTGGCGGG 59.812 66.667 0.00 0.00 0.00 6.13
2766 3051 2.887568 GCGTCCTCTGATGTGGCG 60.888 66.667 0.00 0.00 33.20 5.69
2769 3054 1.016130 GTGGTGCGTCCTCTGATGTG 61.016 60.000 0.00 0.00 37.07 3.21
2770 3055 1.293498 GTGGTGCGTCCTCTGATGT 59.707 57.895 0.00 0.00 37.07 3.06
2797 3082 5.237779 GTCGGTAAGAACAACTCAATGGAAA 59.762 40.000 0.00 0.00 0.00 3.13
2806 3092 2.044758 AGGGTGTCGGTAAGAACAACT 58.955 47.619 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.