>input_sequence_66673
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-------------ATGTCAGGAGGTCGGCAGACATATTGGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGG
AGATGGAGTGTCCTTACTGTGATGCTGGCTTTGTGGCTGAAATGGATGATGTCGATGCTCTCATGAGCCAATTTGTTGGG
ATGTATAGTGATTTTCATCGTGACCCAAGGTTCGGGATCATGGAGGCAATGTCTACCGTGATGCGACATGGAATGGGGAG
CATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCATATTATCTGACCTGGAGACGGAATTTGGTTCAGGGCCATGGT
TGCTCTTCCGTGGCCAGCTCCCCGGTCATCTCTCAGAGGCCAATAGTGGTTTCGACGTTTTCGTCAATGGACGCCGTGGT
GTTGGCATGCGGAGGGCAGATGTTGCAGATTACTTTGTTGGGCCTGGATTGGAAGATCTGATTGAGCAGTTGACTCATAA
TGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCGATTGATGCCATGCCTAGTGTTAGGATCACTGCCAGGCATCTCA
CTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTTGAACTGGGATCAGAAGCAAGAGAGATGCCATGCAAGCATTTA
TACCACTCTGATTGCATACTTCCTTGGCTAGAGCAACACAATTCCTGTCCTGTTTGCCGATATGAGCTGCCCACACAGAG
CTCTAGTGGTGCCAGCTGCTCACGCTCAAGATCAACCAACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGGAGAA
CCAGCGGGCGTCAGAGGAGAAGGAACCCGTTCTCGTTCCTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGT
TAG-----------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G432800
GGTCGGCCTAGCCTAGCCTTGCCGCCGCCGATCAAGACACCCGCCCCTTCCTCCTTGCAGAGTAAACAAGGGGTTCCT--
------------GAGGCCCCAAGGTAAAAGTCCAATCGTATTGCCCGTGGATCTCTGTATCTCGTTTAATTCTTCTAGTA
TGTGGCAAAGGTGCTTGGCGTGAACGCGGACAAACAAACCTTTCTTGCATCAGCTGGGTCTCAGCTTCGTCTTGTATTTG
ATTTGACACACTGGAAACTTCGTTTCCTCCCGTGTCAAAATTGAAATCTTGATCAATTAATTTCTAGTTTATGTGTGCCA
AATTGATGTTTATGTACAAGAGATATGGACTTGGTCTGTAACTTACATCTGTGGTGTGTGACTGTTCACAAGTTGTAAGA
ATTGATTCTGGAGTT--------------------GCAGATGCGTGTTTGTGGAATATACTTGTGTGCTATC------CA
AACAAGTCCCGAAAGTTTTTCTTT------ACACGGGAAATGGTTTCCGGTGGTTTCATCTGTGGCCAGTAAAATAACCC
TGTATC-TTAATACAGCTGCATATATTTACATGATATCCAAGCAGGGCCTTAGTGTAGTATTGCCAGCTGAAGAATTTTT
TGGATCCTACAGTATCCCTTTCAGTTGGTTGGATTGATCTTCGACTGTGAAGGTCCCTATGGTTTTTGTCTTCCGAG-TT
TTGTCTTATCTTTGTTGGAACAACTTTTTAAGCAAGGTAAAATGATCTAGACATAGTGCAGTATTATAAACTGCTGCACA
ATGTTAACAAGTCCTCGAGTACGCACTTTGCTTATTTAGACTGATCTTGGACCATACGCATACTGTC-----TTTTATCT
TTTCGCTTATCTATGTTGGGATAATTGTGTGGAAGGTTGTGTGTGCAGTCTAGTGTGATTGTGTAAGTCATGTTTGAAAT
TTGTTGCTGAGCTCTTGGCTATTATGTCTATTTTGCAGATCTGAGGAGATCCGCTTCCTTTTGGTTTATTTGTGAGGCAG
TGCACCTGAAGAAATGTCAGGAGGTCGGCAGACATATTGGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGG
AGATGGAGTGTCCTTACTGTGATGCTGGCTTTGTGGCTGAAATGGATGATGTCGATGCTCTCATGAGCCAATTTGTTGGG
ATGTATAGTGATTTTCATCGTGACCCAAGGTTCGGGATCATGGAGGCAATGTCTACCGTGATGCGACATGGAATGGGGAG
CATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCATATTATCTGACCTGGAGACGGAATTTGGTTCAGGGCCATGGT
TGCTCTTCCGTGGCCAGCTCCCCGGTCATCTCTCAGAGGCCAATAGTGGTTTCGACGTTTTCGTCAATGGACGCCGTGGT
GTTGGCATGCGGAGGGCAGATGTTGCAGATTACTTTGTTGGGCCTGGATTGGAAGATCTGATTGAGCAGTTGACTCATAA
TGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCGATTGATGCCATGCCTAGTGTTAGGATCACTGCCAGGCATCTCA
CTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTTGAACTGGGATCAGAAGCAAGAGAGATGCCATGCAAGCATTTA
TACCACTCTGATTGCATACTTCCTTGGCTAGAGCAACACAATTCCTGTCCTGTTTGCCGATATGAGCTGCCCACACAGAG
CTCTAGTGGTGCCAGCTGCTCACGCTCAAGATCAACCAACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGGAGAA
CCAGCGGGCGTCAGAGGAGAAGGAACCCGTTCTCGTTCCTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGT
TAGATTAGTCTGGTTACCTGGTTGGAGTTCACAATGCTATTTTTAGTGAAGATGCTGATCAAATGTGCTTTATGTGTGTC
ACGTCTTACACCCAATATGTAATGTATGGCTTGTTATAGTCGCCCCACAAAATGGATTTCCTTGCGAGTATATAGTCATC
TATCTTGCTAAATTTCGTAGCAGCTGATTTTGTTTGCTTTTACACAAGTCAGTATAAACTTCTTTTTTTGAGATTTCAAT
ATAAACTTTTTGGGGGTGAGAGGTCGGATATTTATTTTCTGCTGTATTGGTTGTTTTGTAGTTGTTGCATAATATATACC
TAGTAAATTTGTTTATTTGTTGCTGGACAGGAATTTTTGGAACATGGTTTCAAGAGCACCCCGTTAGAACAGTAAAATAA
AAAAATACTA----GAAAAAAAAAATCA------------AAACCTGTTGATTGTTGCACCTTGAAATTTTAAGGTATCC
ATCAATGGTAACAAGTATGATTCTAAAAATATCGAAGACAAACACTTGCCCACATA--TAGGTACTCCCTCCATCCCATA
ATATAAAAGCGTCTTTGACAGTAGTTGATATTAATGGGTTGACATGGTATTGAGTGTTGACTTGATATTTGTTATTAGTA
CAAGCTAAGATTACGTTGGGATCTCGTACTAGTGGATCCTCGAGCTGACATGAAAA------------------------
------------------------AAAGTAGTCATGCCGGCCCGCTCTTGTGATAGTCCATCGGCTTCCATCGACGTCGG
CCGCTCAGATGCCGCCGGCCA-CCCCCTCCTACTTGTACTTCCCACCCTCACCGCTAGCCCTTCCCTCCCTCCCCGCCTC
AGGTACCGCGGGGCTTCCTCCCCATT------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CAACTATCTGTGATTGTGGGTGCGCGGCTGCATGAGATCTGGATTGGGAG
GTCGACCCCCCGCCACATCAGAGGACGCACCACCTTTAGGCTTTCCA-TTGAGTTGTTCTTACCGACACCCTTCTTGGCC
TTACCCTT----CTTCTTGAAGTTGGTTGTTTTGTTCAC
>chr3B_12
-----------CCTAGCCTTGCCGCCGCCGATCAAGACACCCGCCCCTTCCTCCTTGCAGAGTAAAGGAGGGGTTGGAGC
GACTTGTCCCCCGAGGCCCCAAGGTAAAAGTCCAACCGTATTGCCCTTGGATCTCTGCGTCTTGTTTAATTCTT---GTA
TGTGGCGAAGGTGCTTGACGTGAACGCCCACAAACAAACCTTTCTTGCATCAGCTGGGTCTCAGTTTCGTCTTGTATTTG
ATTTGACACACTGGAAACTTTGTTTCCTCCCATGTCAAAATTGAAATCTTGATCAAATGATTTCTAGGTTATGTGTCCCA
AATTGATGTTTATGTACAAGACATATGGGCTTG-TCTGCAATTTACATCTGTG--GTGTGACTGTTCACAAGTTGTAAGA
ATTGATTCTGGAGTTGCAGCTGCATGTACGTAGTTGCAGATGCGTGTTTGTGGAATATACTTGCGTGCTATCCCTATCCA
AACAAGGCCCAACAGTTTTTCTACAG--------GGGAAATGGCTTCCGGTGGTTTCATCCGTGACCAGTAAAATACCCC
TATATC-GTAATACAGCTGCATATATTTACATGGTATTCAAGCAGGGCATTAGTGTAGTATTGTCAGCTGATGAATTTTT
TGGATCCTACGGTATCCCTTTCAGTTGATTGGACTGATCTTCAACTGTGAAGGTCCCTATGGTTTTTGTCTTCAGAGTTT
TTGACTTATCTTTGTTGGAACAACTTTTTAAGCTAGGTAAAATGATCTAGACATAGTGTAGTATTATAAACTGCTGCACA
ATGTTAAGAAGTCCTCATGTACGCAGTTCGCTTATTTGGATTGATCTTGGACCATATACATGCCCCTACTGTTTTCACCT
TTCCACTTATCCATGTTGGGATAATTGTGTGGAAGGTTGTGTATGCAGTCTAGTGTGATTGTGTAAGTCACGTTTGAAAT
TTGTTGCTGAGCTCTTGGCTATTATGTCTATTTTGCAGATCTGAGGAGATCCGCTTCCTTTTGGTTTATTTGTGAGGCAG
TACACCTGAAGAAATGTCAGGAGGTAGGCAGACATATTGGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGG
AAATGGAGTGTCCTTACTGTGATGCTGGCTTTGTGGCTGAAATGGATGATGTCGATGCTCTCATGAGCCAGTTTGTTGGG
ATGTATAGTGATTTTCATCGTGACCCAAGGTTTGGGATCATGGAAGCAATGTCTACCGTGATGCGACATGGAATGGGGAG
CATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCATATTATCTGACCTGGAGATGGAATTTGGTTCAGGGCCATGGT
TGCTCTTCCGTGGCCAGCTCCCTGGTCATCTCTCAGAGGCCAATAATGGTTTCGACGTTTTCGTCAATGGACGCCGTGGT
GTTGGCACGCGGAGGGCAGATGTTGCAGATTACTTTGTTGGGCCTGGATTAGAAGATCTAATTGAGCAGTTGACTCATAA
TGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCGATAGATGCCATGCCTAGTGTTAGGATCACTGCTAGGCATCTCA
CTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTTGAACTGGAATCGGAAGCAAGAGAGATGCCATGCAAGCATTTA
TACCACTCTGATTGCATACTTCCTTGGCTAGAACAACACAATTCCTGTCCTGTTTGCCGATATGAGCTGCCAACACAGAG
CTCTAGTGGTGCCAGCTGCTCACGCTCAAGATCAACCAACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGGAGAA
CCAGTGGGCGTCA---GAGAAGGAATCCGTTCTCGTTCCTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGT
TAGATTAGTTTGGTTACCTGGTTGGAGTTCACAATGCTATCTT-AGTGAAAATGCTGATCGAATGGGCTTTATGTATGTC
GCGTCTTACACCCAATATGTAATGTATGGCTTGTTATAGTCGCCCCACAAAATGGATTTCCTTGCAAGTATATAGTCATC
TATCTTGCTAAATTTCATAGCAGCTGATTTTGTTTGCTTTTACACAAGTCAATATGAACTTCTTATTTTGAGTTTTCAAT
ATAAACTTTTTGGGGGTGAGAGGTCGGATATTTATTTTCTGCTGTATTGGTTGTTTTGTAGTTGATGCATAATATATACC
TAGTAAATTTGTTTATTTGTTGCTGGACAGGAATTTTTGGAACATGGTTTCAAGCGCAC-TCGTTAGAACAGTAAAATAA
AAAAAAACTA----TTTTAAAAAAAAATCTGACACCTGAGAAACCTGTTGATTGTTGCACCTTGAAATTTCAAGGTATCC
ATCAATGGTAGCAAGTATGATTCTAAAAATACCGAAGACGAACTCTTGCCCTATA-------------------------
---TAAGAGTGTTTTTTACAGTAGTTGATATTAGTGGGTTGACGTAGTATTGA-------TTTGATATTTGTTATTAGTA
CAAGCTAAAATTACGGTGGGATCTCATACTAGTGGATCCTCGAGCTGACATGAAAAAAATTACGGTGGGATCTCATACTA
GTGGATCCTCGAGCTGACATGAAAAAAGTAGTCATGCCCGCCCGCTCTCGTGATAGTCCACCGGCTTCCATCGGCGTCGG
CCGCTCAGATGCCGTCGGCCATCCCCCTCCTAGCCGTCCTTCCCACCCTCGTCGCCGGCCCTCCCCTCCCTCCCCGCCTC
AGGTGTTGTGGGGCTTCCTCCCCATC------------------------------------------------------
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------------------------------CAACTATTTGTGGTCGTGGGTGCGCGACTGCATGGTATTTGGATTGGGAG
GTCGACCCTCAGCTGCATCAGAGGATGCACCACCTTTAGGCCTTTCA-TTGTGTTGTTCTTACCGACACCCTTCTTGGCC
TTACCCTT----CTTCTTGAAGTTGGTTGTTTTGCTCAC
>chr3A_80
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-------------AGGCCCCAAGGTAAAAGTCCAATCGTATTGTCCGTGGATCTCCGTGTCCTGTTTAATTCTTGTAGTA
TGTGGCAAAGGTGCTTGGCGTGAGCGCCCACAAACAAACCCTTCTTGCATCAGCTGGGTCTCAGCTTCGTCTTGTAGTTG
ATCTGGCACACTGGAAACTTTGTTTCTT-CCATGTCAAAATTGGTATTTTGATCAAATGATTTCTAGTTTATGCGTCCCA
AATTGATGTTTATGTGCAAGACATGTGGGCTTG-TGTGTAATTTACATCTGTG--GTGTGACTGTTTACAAGTTGTAAGA
ATTGATTCTGGAGTTGCTGCTGCATGTACGTAGTCGCAGATGCGTGTTTGTGGAATATACTTGTGTGCTATC------CA
AACAAGTCCCGAAAGTTTTTCTTTTTCTTTACACGGGAAA----------TGGTTTCATCTGTGGCCAGTAAAATACCCC
TGTATCTTTAATACAGCTGCATATATTTACATGGTGTCCAAGCAGGGCCTTAGTGTAGTATTGTGTGCTGATGATTTTTT
TTGGATCCTATGTATCCCTTTCAGTTGGTTGGACTGATCTTCGACTGTGAAGGTCCCTATGGTTTTTGTCTTCCGAGTTT
T-GTCTTATCTTTGTTGGAACAACTTTTTAAGCAAGGTAAAATGATCTAGACATAGTGTAGTATTATAATCTGCTGCACA
ATGTTAAGAAGTCCTCGAGTACGCAGTTCGCTTGTTTGGACTGATCTTGGACCATGTACATGCCCCTACTGTTTTCATCT
TTTCACTTATCCATGTTGGGATAATCGTGTGGAAGGTTGTGTATGCAGTCTAGTGTGATTGTGCAAGTCACGTTTGAAAT
TTGTTGCTGAGCTCTTGGCTATTATGTCTATTTTGCAGATCTGAGGAGATCCGCTTCCTTTTGGTCTATTTGTGAAGCAG
TACACCTGAAGAAATGTCAGGAGGTCGGCAGACATATTGGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGG
AGATGGAGTGCCCTTACTGTGATGCTGGCTTTGTGGCTGAAATGGATGATGTCGATGCTCTCATGAGCCAATTTGTTGGG
ATGTATAGTGATTTTCATCGTGACCCAAGGTTCGGGATCATGGAGGCAATGTCTACCGTGATGCGACATGGAATGGGGAG
CATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCATATTATCTGAACTGGAGATGGAATTTGGTTCGGGGCCATGGT
TGCTCTTCCGTGGCCAGCTCCCCGGTCATCTCTCAGAGGCCAATAATGGTTTCGACGTTTTCGTCAATGGACGCCGTGGT
GTTGGCATGCGGAGGGCAGATGTTGCAGATTACTTTGTTGGGCCTGGATTAGAAGATCTGATTGAGCAGTTGACTCATAA
TGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCTATTGATGCCATGCCTAGTGTTAGGATCACTGCCAGGCATCTCA
CTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTTGAACTGGGATCAGAAGCAAGAGAGATGCCATGCAAGCATTTA
TACCACTCTGATTGCATACTTCCTTGGCTAGAACAACACAATTCCTGCCCTGTGTGCCGATATGAGCTGCCAACACAGAG
CTCTAGTGGTGCTAGCTGCTCACGCTCAAGATCAACCAACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGAAGAA
CCAGTGGGCGTCAGAGGAGAAGGAATCCGTTCTCGTTCCTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGT
TAGATTAGTTTGGTTACCTGGTTGGAGTTCACAATGCTATTTT-AGTGAAGATGCTGATCAAATGGGATTTATGTGTGTC
GCGTCTTACACCCAATATGTAATGTATGGCTTGTTATAGTCGCCCCACAAAATGGATTTCCTTGCAAGTATATAGTCATC
TATCTTGCTAAATTTCATAGCAGCTGATCTTGTTTGCTTTTACACAAGTCAGTATAAACTTCTTATTT-GAGATTTCAAT
ATAAACTTTTTGGGGGTGAGAGGTCGGGTATTTATTCTCTGCTGTATTGGTTGTTTTGTTGTTGCTGCATAACACATACG
TAGCAAATTTGTTTATTTGTTGCTGTACAGGAATTTTTGGAACATGGTTTCAAGCGCAC-CCGTTAGAACAGTAAAATAA
AAAAATAAAAGTTTTTTTTAAAAAAAATCTGACGCCTGAGAAACCTGTTGATTGTTGCACCTTGAAATTTCAAGATATCC
ATCAATGGTAGCAAGTATGATTATAAAAATACCGAAGACAAACACTTGCCCACATAGATAGGCACTCCCTTCGTCCTATA
ATGTAAGAGTGTTTTTGACAATAGTTGATATTAGTGGGTTGACATGGTATTGA-------CTTGATATTTGTTATTAGTA
CAAGCTAAAATTACGGTGGGATCTCATACTAGTGGATCCTCGAGCTGACATGA---------------------------
---------------------AAAAAAGTAGTCATGCCCGATTGCTCTTGTGATAGTCCACCGGCTTCCATCGGCGTCGG
CCGCTCAGATGCCGTCGGCCACCCCCCTCCTACCCGTCCTTCCCACCCTCATCGTTGGCCCTCCCCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCATCTATCTGTGGTCGTGGGTGCGTGACTGCATGGTATTTGGATTGGGAG
GTCGACCCTCAGCTGCATCAGAGGACGCACCACCTTTAAGCCTTCCATTTGTGTTGTTCTTACGGACACCCTTCTTGGCC
TTACCCTTCTTCCTTCTTGAAGTTGGTTGTTTTGCTCAC
>SNPs
SSSSSSSSSSS-------------------------------------------------------SS-------SSS--
----------------------------------------------------------S---S-----------S-----
---------------------------SS---------------------------------------------------
--------------------S----------S------------------------S-S-----------------S---
---------------------S------S----S-------S-----------SS-------------------------
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-------------------------------------------S--------------------------------S---
---------------------------------S-----------------------------S-------S--------
----------S----------------------S----------------------------------------------
----------------------------------------------------------S---------------------
-------S-----------------S--S--------S------------------SS---S-SSSS--------S----
----S------S------------------------------S---------------------------S---------
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-S------------------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
---------------------------------------------S----------------------------------
--------------------------------------------------S-----------------------------
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--------------------------------S--------------------------------------S--------
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----S--------------------S------------------------------------------------------
---------S---------------------------------S---------------------S--------------
S----------------------------------------------------------------S--------------
----------------S-----------------------------------------------S---------------
----------------------------------------------------------------S---------------
------------------------------------------------------S----S--------------------
--------------SSSS-------SSS------------------------------------------S---------
----------S--------------------S------------------------------S-------S-S---S---
--S---S--S--S--------------------S-------------------SSSSSSS--------------------
--------S------S---------S------------------------------------------------------
--------------------------------------S---------------------S------------S------
--------------S------------------SS--S-------------S----S-----S-----------------
----SSS-S----------------S------------------------------------------------------
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------------------------------------------S-S-----------S-------SS--S-----------
--------S-S--SS--------------------------S---------S----------------------------
----------------------------------S----
>forward_826
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------ACAAGTCCTCGAGTACGCAC------------------------------------------------------
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>reverse_1866
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-------------------------CCCGTTCTCGTTCCTATGGC-----------------------------------
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>forward_1752
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----------------------------------------------------TTTGCCGATATGAGCTGCCC--------
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>reverse_2679
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--------------------------------------GGCCCGCTCTTGTGATAGTC----------------------
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