Multiple sequence alignment - TraesCS3D01G431800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G431800 chr3D 100.000 3898 0 0 1 3898 545906894 545910791 0.000000e+00 7199.0
1 TraesCS3D01G431800 chr3D 96.328 708 17 8 1 702 553424574 553425278 0.000000e+00 1155.0
2 TraesCS3D01G431800 chr3D 91.573 178 13 1 1385 1562 562641057 562640882 1.080000e-60 244.0
3 TraesCS3D01G431800 chr3D 82.800 250 30 9 2403 2650 597065423 597065661 1.100000e-50 211.0
4 TraesCS3D01G431800 chr3D 80.899 178 25 6 3521 3691 58397613 58397788 8.790000e-27 132.0
5 TraesCS3D01G431800 chr3D 93.182 44 3 0 666 709 595627844 595627887 9.040000e-07 65.8
6 TraesCS3D01G431800 chr3D 97.059 34 1 0 3831 3864 545910316 545910349 1.510000e-04 58.4
7 TraesCS3D01G431800 chr3D 97.059 34 1 0 3423 3456 545910724 545910757 1.510000e-04 58.4
8 TraesCS3D01G431800 chr3A 88.731 2822 152 76 708 3460 682314774 682317498 0.000000e+00 3297.0
9 TraesCS3D01G431800 chr3A 90.055 181 14 2 1382 1562 38420583 38420759 8.420000e-57 231.0
10 TraesCS3D01G431800 chr3A 97.059 34 1 0 3831 3864 682317461 682317494 1.510000e-04 58.4
11 TraesCS3D01G431800 chr3B 90.000 1350 76 34 704 2031 722351252 722352564 0.000000e+00 1690.0
12 TraesCS3D01G431800 chr3B 93.969 1111 51 9 2176 3279 722352558 722353659 0.000000e+00 1666.0
13 TraesCS3D01G431800 chr3B 83.409 657 66 34 91 713 170517457 170516810 1.570000e-158 569.0
14 TraesCS3D01G431800 chr3B 85.240 542 57 18 91 625 768648033 768648558 1.590000e-148 536.0
15 TraesCS3D01G431800 chr3B 90.270 185 15 3 1382 1564 389764943 389765126 5.030000e-59 239.0
16 TraesCS3D01G431800 chr3B 86.911 191 12 3 3266 3443 722353869 722354059 6.600000e-48 202.0
17 TraesCS3D01G431800 chr3B 81.152 191 23 11 3505 3691 214440408 214440227 1.460000e-29 141.0
18 TraesCS3D01G431800 chr5B 91.460 726 37 11 1 709 483711136 483711853 0.000000e+00 974.0
19 TraesCS3D01G431800 chr5B 96.104 77 3 0 1 77 455170805 455170729 4.090000e-25 126.0
20 TraesCS3D01G431800 chr5B 96.104 77 3 0 1 77 609091797 609091721 4.090000e-25 126.0
21 TraesCS3D01G431800 chr5D 85.165 364 36 12 274 631 468047426 468047075 1.330000e-94 357.0
22 TraesCS3D01G431800 chr7D 86.310 336 35 8 274 606 564783219 564782892 4.790000e-94 355.0
23 TraesCS3D01G431800 chr7D 86.012 336 35 9 274 606 564850908 564850582 2.230000e-92 350.0
24 TraesCS3D01G431800 chr7D 85.163 337 37 10 274 606 564806105 564805778 2.240000e-87 333.0
25 TraesCS3D01G431800 chr7D 90.055 181 16 1 1382 1562 192364932 192365110 2.340000e-57 233.0
26 TraesCS3D01G431800 chr7D 85.616 146 18 1 2721 2866 91109284 91109142 2.430000e-32 150.0
27 TraesCS3D01G431800 chr7D 86.747 83 9 2 3539 3619 500114940 500115022 1.490000e-14 91.6
28 TraesCS3D01G431800 chr1D 83.668 349 43 13 92 433 78325293 78325634 2.260000e-82 316.0
29 TraesCS3D01G431800 chr1D 90.710 183 14 2 1382 1564 211710442 211710621 1.400000e-59 241.0
30 TraesCS3D01G431800 chr1D 92.771 83 2 3 628 710 78325594 78325672 2.460000e-22 117.0
31 TraesCS3D01G431800 chr1D 87.500 88 7 3 3521 3607 415545084 415545000 8.910000e-17 99.0
32 TraesCS3D01G431800 chr5A 84.859 284 30 10 91 368 689659485 689659761 1.380000e-69 274.0
33 TraesCS3D01G431800 chr7A 89.730 185 16 3 1382 1564 156551856 156552039 2.340000e-57 233.0
34 TraesCS3D01G431800 chr7A 82.400 250 31 9 2403 2650 227925780 227925542 5.110000e-49 206.0
35 TraesCS3D01G431800 chr7A 83.505 97 12 3 3527 3619 566021927 566022023 1.930000e-13 87.9
36 TraesCS3D01G431800 chr1A 89.730 185 16 3 1382 1564 371515329 371515512 2.340000e-57 233.0
37 TraesCS3D01G431800 chr2D 83.200 250 31 9 2403 2650 635101918 635101678 6.560000e-53 219.0
38 TraesCS3D01G431800 chr2D 76.613 372 50 20 3482 3828 556706031 556705672 1.860000e-38 171.0
39 TraesCS3D01G431800 chr2A 83.200 250 29 9 2403 2650 235343415 235343177 2.360000e-52 217.0
40 TraesCS3D01G431800 chr2A 83.200 250 29 9 2403 2650 747176704 747176466 2.360000e-52 217.0
41 TraesCS3D01G431800 chr2A 82.000 250 32 9 2403 2650 235347143 235346905 2.380000e-47 200.0
42 TraesCS3D01G431800 chr2A 79.487 195 24 8 3520 3698 696839876 696839682 1.470000e-24 124.0
43 TraesCS3D01G431800 chr7B 81.356 295 24 12 2599 2866 43676761 43676471 1.100000e-50 211.0
44 TraesCS3D01G431800 chr7B 75.159 314 48 22 3521 3828 656924847 656925136 1.900000e-23 121.0
45 TraesCS3D01G431800 chr7B 89.362 47 3 1 664 710 666904344 666904300 1.510000e-04 58.4
46 TraesCS3D01G431800 chr6D 81.928 249 33 8 2403 2650 402872395 402872632 2.380000e-47 200.0
47 TraesCS3D01G431800 chr6D 81.416 226 32 3 1886 2109 402870646 402870863 4.000000e-40 176.0
48 TraesCS3D01G431800 chr6D 94.872 78 4 0 1 78 429743538 429743461 5.290000e-24 122.0
49 TraesCS3D01G431800 chr6D 94.805 77 4 0 1 77 10749793 10749869 1.900000e-23 121.0
50 TraesCS3D01G431800 chr6D 94.805 77 4 0 1 77 34318599 34318523 1.900000e-23 121.0
51 TraesCS3D01G431800 chr6D 85.714 91 8 3 3505 3595 11775571 11775656 1.490000e-14 91.6
52 TraesCS3D01G431800 chr4B 96.104 77 3 0 1 77 29602889 29602813 4.090000e-25 126.0
53 TraesCS3D01G431800 chr1B 96.104 77 3 0 1 77 328144829 328144753 4.090000e-25 126.0
54 TraesCS3D01G431800 chrUn 94.805 77 4 0 1 77 300474047 300474123 1.900000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G431800 chr3D 545906894 545910791 3897 False 2438.6 7199 98.039333 1 3898 3 chr3D.!!$F5 3897
1 TraesCS3D01G431800 chr3D 553424574 553425278 704 False 1155.0 1155 96.328000 1 702 1 chr3D.!!$F2 701
2 TraesCS3D01G431800 chr3A 682314774 682317498 2724 False 1677.7 3297 92.895000 708 3864 2 chr3A.!!$F2 3156
3 TraesCS3D01G431800 chr3B 722351252 722354059 2807 False 1186.0 1690 90.293333 704 3443 3 chr3B.!!$F3 2739
4 TraesCS3D01G431800 chr3B 170516810 170517457 647 True 569.0 569 83.409000 91 713 1 chr3B.!!$R1 622
5 TraesCS3D01G431800 chr3B 768648033 768648558 525 False 536.0 536 85.240000 91 625 1 chr3B.!!$F2 534
6 TraesCS3D01G431800 chr5B 483711136 483711853 717 False 974.0 974 91.460000 1 709 1 chr5B.!!$F1 708
7 TraesCS3D01G431800 chr2A 235343177 235347143 3966 True 208.5 217 82.600000 2403 2650 2 chr2A.!!$R3 247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 797 0.319297 ACCGGAGCACGTCTACAAAC 60.319 55.000 9.46 0.0 42.24 2.93 F
832 904 0.454452 GCAAAAGTCGACGGCAATCC 60.454 55.000 10.46 0.0 0.00 3.01 F
856 931 0.809385 TAGAGCGACACTACACCAGC 59.191 55.000 0.00 0.0 0.00 4.85 F
861 936 1.080025 GACACTACACCAGCGACCC 60.080 63.158 0.00 0.0 0.00 4.46 F
2095 2217 1.143684 GGGGCTTATCTGATTCTGCCA 59.856 52.381 21.17 0.0 41.86 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 2379 0.230769 GCGAACTATGCAGCATCGTC 59.769 55.0 12.38 6.97 36.99 4.20 R
2271 2396 1.075542 TAAGCATCTTCAACACGGCG 58.924 50.0 4.80 4.80 0.00 6.46 R
2371 2496 1.242076 AAGCATCTTCAGCGCAAACT 58.758 45.0 11.47 0.00 37.01 2.66 R
2894 6750 1.239968 GGTTCTTGGGCACAGCTCAG 61.240 60.0 0.00 0.00 41.35 3.35 R
3486 7593 0.106769 TTGCTGTTCACCAAGGAGCA 60.107 50.0 0.00 0.00 37.88 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 230 9.476202 CATGACTATATGTTTGAACCGAAGATA 57.524 33.333 0.00 0.00 0.00 1.98
730 792 0.393944 ATCTGACCGGAGCACGTCTA 60.394 55.000 9.46 0.00 42.24 2.59
731 793 1.136984 CTGACCGGAGCACGTCTAC 59.863 63.158 9.46 0.00 42.24 2.59
732 794 1.583495 CTGACCGGAGCACGTCTACA 61.583 60.000 9.46 0.00 42.24 2.74
733 795 1.174078 TGACCGGAGCACGTCTACAA 61.174 55.000 9.46 0.00 42.24 2.41
735 797 0.319297 ACCGGAGCACGTCTACAAAC 60.319 55.000 9.46 0.00 42.24 2.93
796 868 2.342279 CCGCCTTGTTCTCCGTCA 59.658 61.111 0.00 0.00 0.00 4.35
797 869 1.301401 CCGCCTTGTTCTCCGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
798 870 0.882927 CCGCCTTGTTCTCCGTCAAA 60.883 55.000 0.00 0.00 0.00 2.69
799 871 1.156736 CGCCTTGTTCTCCGTCAAAT 58.843 50.000 0.00 0.00 0.00 2.32
832 904 0.454452 GCAAAAGTCGACGGCAATCC 60.454 55.000 10.46 0.00 0.00 3.01
849 924 3.562343 ATCCAGAGTAGAGCGACACTA 57.438 47.619 0.00 0.00 0.00 2.74
851 926 2.027469 TCCAGAGTAGAGCGACACTACA 60.027 50.000 13.54 0.00 41.56 2.74
854 929 2.082231 GAGTAGAGCGACACTACACCA 58.918 52.381 13.54 0.00 41.56 4.17
855 930 2.085320 AGTAGAGCGACACTACACCAG 58.915 52.381 13.54 0.00 41.56 4.00
856 931 0.809385 TAGAGCGACACTACACCAGC 59.191 55.000 0.00 0.00 0.00 4.85
857 932 1.801913 GAGCGACACTACACCAGCG 60.802 63.158 0.00 0.00 0.00 5.18
858 933 2.196382 GAGCGACACTACACCAGCGA 62.196 60.000 0.00 0.00 0.00 4.93
860 935 1.443872 CGACACTACACCAGCGACC 60.444 63.158 0.00 0.00 0.00 4.79
861 936 1.080025 GACACTACACCAGCGACCC 60.080 63.158 0.00 0.00 0.00 4.46
1293 1372 3.453679 GCCCGACTCGGCTTCTCT 61.454 66.667 12.37 0.00 46.86 3.10
1294 1373 2.492090 CCCGACTCGGCTTCTCTG 59.508 66.667 12.37 0.00 46.86 3.35
1311 1390 3.835978 TCTCTGTCGGATGGAAGGTTTTA 59.164 43.478 0.00 0.00 0.00 1.52
1321 1400 5.705609 ATGGAAGGTTTTACATCACACAC 57.294 39.130 0.00 0.00 32.11 3.82
1322 1401 3.562141 TGGAAGGTTTTACATCACACACG 59.438 43.478 0.00 0.00 0.00 4.49
1327 1414 1.954927 TTTACATCACACACGCCACA 58.045 45.000 0.00 0.00 0.00 4.17
1423 1510 9.943163 GGCTATGAGATTTGAGAAGAAAATAAC 57.057 33.333 0.00 0.00 0.00 1.89
1469 1556 2.624316 ATGTGCGCTGAATTTCTGTG 57.376 45.000 9.73 11.26 0.00 3.66
1526 1613 3.256558 TCGTTCAACAGCATCAGAGATG 58.743 45.455 2.71 2.71 0.00 2.90
1566 1654 7.220030 GGATATGGAGTAATCAAAGCTTGAGA 58.780 38.462 0.00 1.38 43.98 3.27
1619 1707 5.011329 ACCACAATTCACTCTGAAATGCATT 59.989 36.000 5.99 5.99 40.07 3.56
1667 1760 7.516627 GCAAGTAGTAAAATTTGTTGTTGCCTG 60.517 37.037 10.08 0.00 32.34 4.85
1670 1763 5.115480 AGTAAAATTTGTTGTTGCCTGTGG 58.885 37.500 0.00 0.00 0.00 4.17
1672 1765 3.625649 AATTTGTTGTTGCCTGTGGTT 57.374 38.095 0.00 0.00 0.00 3.67
1681 1774 5.543507 TGTTGCCTGTGGTTAAATGAAAT 57.456 34.783 0.00 0.00 0.00 2.17
1807 1911 7.449704 AGGGGAGCTCATATGTAAAATTTCATC 59.550 37.037 17.19 0.00 0.00 2.92
1829 1933 2.065993 TCTGTCGTAGAAACTGCAGC 57.934 50.000 15.27 0.00 39.69 5.25
1854 1958 7.605309 GCATGGATTGTACTGATCTGATCATTA 59.395 37.037 19.84 15.69 38.85 1.90
1915 2019 5.539979 TGTAACTCGCAATAAACCACACTA 58.460 37.500 0.00 0.00 0.00 2.74
1938 2042 3.126514 CACTAGATGTTTGCTTGCTCCTG 59.873 47.826 0.00 0.00 0.00 3.86
1981 2085 9.912634 CACTTTTAAAGGTCATTACACATGATT 57.087 29.630 9.64 0.00 0.00 2.57
2074 2178 1.827344 TGTTGCAACATGGTGTTTGGA 59.173 42.857 27.96 0.63 38.77 3.53
2095 2217 1.143684 GGGGCTTATCTGATTCTGCCA 59.856 52.381 21.17 0.00 41.86 4.92
2106 2228 2.151202 GATTCTGCCACACTTCCGAAA 58.849 47.619 0.00 0.00 0.00 3.46
2112 2234 1.606668 GCCACACTTCCGAAATTCACA 59.393 47.619 0.00 0.00 0.00 3.58
2154 2279 2.043939 TGGGTCTAGGTTTCTGAGGCTA 59.956 50.000 0.00 0.00 0.00 3.93
2159 2284 5.046520 GGTCTAGGTTTCTGAGGCTAAAAGA 60.047 44.000 0.00 0.00 0.00 2.52
2234 2359 7.035612 GTCACCCCTGAAATTTTGATTATGTC 58.964 38.462 0.00 0.00 0.00 3.06
2254 2379 4.155826 TGTCGATGTTTGCTTTTAGGATGG 59.844 41.667 0.00 0.00 0.00 3.51
2256 2381 4.394920 TCGATGTTTGCTTTTAGGATGGAC 59.605 41.667 0.00 0.00 0.00 4.02
2271 2396 1.939974 TGGACGATGCTGCATAGTTC 58.060 50.000 25.42 23.98 30.40 3.01
2360 2485 3.430895 TCGACGTTTGCTTTAGGATGAAC 59.569 43.478 0.00 0.00 0.00 3.18
2371 2496 5.409520 GCTTTAGGATGAACGATGATGCATA 59.590 40.000 0.00 0.00 0.00 3.14
2591 6446 2.899256 TGGAAAATTCTTGCCCAAGGAG 59.101 45.455 8.06 0.00 38.88 3.69
2737 6593 4.265073 TCACTCTGATGATCGACAAGAGA 58.735 43.478 16.80 9.52 37.10 3.10
2738 6594 4.886489 TCACTCTGATGATCGACAAGAGAT 59.114 41.667 16.80 3.97 37.10 2.75
2739 6595 5.359292 TCACTCTGATGATCGACAAGAGATT 59.641 40.000 16.80 4.82 37.10 2.40
2740 6596 5.459434 CACTCTGATGATCGACAAGAGATTG 59.541 44.000 16.80 10.33 37.10 2.67
2894 6750 5.444663 ACAAGAAAGCAAAGAAGATGTCC 57.555 39.130 0.00 0.00 0.00 4.02
2913 6769 1.228245 TGAGCTGTGCCCAAGAACC 60.228 57.895 0.00 0.00 0.00 3.62
2934 6790 1.495878 CTGATGCCTGATGCTACGTC 58.504 55.000 0.00 0.00 42.00 4.34
2976 6833 3.245016 TGAGAATGATCTGCCCTGTTTGT 60.245 43.478 0.00 0.00 35.54 2.83
3054 6912 5.641636 TGTGATACGCTTGTTGTATGACATT 59.358 36.000 0.00 0.00 40.08 2.71
3058 6916 4.320023 ACGCTTGTTGTATGACATTGGTA 58.680 39.130 0.00 0.00 0.00 3.25
3059 6917 4.153475 ACGCTTGTTGTATGACATTGGTAC 59.847 41.667 0.00 0.00 0.00 3.34
3060 6918 4.647964 GCTTGTTGTATGACATTGGTACG 58.352 43.478 0.00 0.00 0.00 3.67
3061 6919 4.153475 GCTTGTTGTATGACATTGGTACGT 59.847 41.667 0.00 0.00 0.00 3.57
3062 6920 5.349270 GCTTGTTGTATGACATTGGTACGTA 59.651 40.000 0.00 0.00 0.00 3.57
3188 7046 1.883275 TGCCTGTGGTAAATTTGACCG 59.117 47.619 0.00 0.00 40.09 4.79
3270 7352 0.035630 AGGCTGTCTGCTTGTCATCC 60.036 55.000 1.44 0.00 42.39 3.51
3310 7398 6.540914 TCGATCTTGGTTTTCCGCTAATTAAT 59.459 34.615 0.00 0.00 44.36 1.40
3322 7410 6.264832 TCCGCTAATTAATTGTGCAATTCTG 58.735 36.000 20.29 8.77 40.99 3.02
3416 7523 2.897350 GCGATCAAAGAGCCCCGG 60.897 66.667 0.00 0.00 0.00 5.73
3460 7567 4.787245 GCTTGTTCCGCGAAGAAAACTAAA 60.787 41.667 8.23 0.00 0.00 1.85
3461 7568 5.427036 TTGTTCCGCGAAGAAAACTAAAT 57.573 34.783 8.23 0.00 0.00 1.40
3462 7569 6.542574 TTGTTCCGCGAAGAAAACTAAATA 57.457 33.333 8.23 0.00 0.00 1.40
3463 7570 6.160664 TGTTCCGCGAAGAAAACTAAATAG 57.839 37.500 8.23 0.00 0.00 1.73
3464 7571 5.927689 TGTTCCGCGAAGAAAACTAAATAGA 59.072 36.000 8.23 0.00 0.00 1.98
3465 7572 6.592607 TGTTCCGCGAAGAAAACTAAATAGAT 59.407 34.615 8.23 0.00 0.00 1.98
3466 7573 6.583912 TCCGCGAAGAAAACTAAATAGATG 57.416 37.500 8.23 0.00 0.00 2.90
3467 7574 5.522460 TCCGCGAAGAAAACTAAATAGATGG 59.478 40.000 8.23 0.00 0.00 3.51
3468 7575 5.522460 CCGCGAAGAAAACTAAATAGATGGA 59.478 40.000 8.23 0.00 0.00 3.41
3469 7576 6.411652 CGCGAAGAAAACTAAATAGATGGAC 58.588 40.000 0.00 0.00 0.00 4.02
3470 7577 6.411652 GCGAAGAAAACTAAATAGATGGACG 58.588 40.000 0.00 0.00 0.00 4.79
3471 7578 6.411652 CGAAGAAAACTAAATAGATGGACGC 58.588 40.000 0.00 0.00 0.00 5.19
3472 7579 5.968387 AGAAAACTAAATAGATGGACGCG 57.032 39.130 3.53 3.53 0.00 6.01
3473 7580 4.809426 AGAAAACTAAATAGATGGACGCGG 59.191 41.667 12.47 0.00 0.00 6.46
3474 7581 4.395959 AAACTAAATAGATGGACGCGGA 57.604 40.909 12.47 0.00 0.00 5.54
3475 7582 3.644884 ACTAAATAGATGGACGCGGAG 57.355 47.619 12.47 0.00 0.00 4.63
3476 7583 2.957006 ACTAAATAGATGGACGCGGAGT 59.043 45.455 12.47 0.00 0.00 3.85
3477 7584 2.981859 AAATAGATGGACGCGGAGTT 57.018 45.000 12.47 0.00 0.00 3.01
3478 7585 2.981859 AATAGATGGACGCGGAGTTT 57.018 45.000 12.47 0.00 0.00 2.66
3479 7586 2.981859 ATAGATGGACGCGGAGTTTT 57.018 45.000 12.47 0.00 0.00 2.43
3480 7587 2.004583 TAGATGGACGCGGAGTTTTG 57.995 50.000 12.47 0.00 0.00 2.44
3481 7588 0.673644 AGATGGACGCGGAGTTTTGG 60.674 55.000 12.47 0.00 0.00 3.28
3482 7589 2.253414 GATGGACGCGGAGTTTTGGC 62.253 60.000 12.47 0.00 0.00 4.52
3483 7590 2.975799 GGACGCGGAGTTTTGGCA 60.976 61.111 12.47 0.00 0.00 4.92
3484 7591 2.332654 GGACGCGGAGTTTTGGCAT 61.333 57.895 12.47 0.00 0.00 4.40
3485 7592 1.022451 GGACGCGGAGTTTTGGCATA 61.022 55.000 12.47 0.00 0.00 3.14
3486 7593 1.014352 GACGCGGAGTTTTGGCATAT 58.986 50.000 12.47 0.00 0.00 1.78
3487 7594 0.732571 ACGCGGAGTTTTGGCATATG 59.267 50.000 12.47 0.00 0.00 1.78
3488 7595 0.592247 CGCGGAGTTTTGGCATATGC 60.592 55.000 19.79 19.79 41.14 3.14
3489 7596 0.740737 GCGGAGTTTTGGCATATGCT 59.259 50.000 26.12 6.10 41.70 3.79
3490 7597 1.268743 GCGGAGTTTTGGCATATGCTC 60.269 52.381 26.12 16.73 41.70 4.26
3491 7598 1.334869 CGGAGTTTTGGCATATGCTCC 59.665 52.381 26.12 21.21 41.70 4.70
3492 7599 2.659428 GGAGTTTTGGCATATGCTCCT 58.341 47.619 26.12 14.45 39.36 3.69
3493 7600 3.026694 GGAGTTTTGGCATATGCTCCTT 58.973 45.455 26.12 8.41 39.36 3.36
3494 7601 3.181483 GGAGTTTTGGCATATGCTCCTTG 60.181 47.826 26.12 0.00 39.36 3.61
3495 7602 2.762327 AGTTTTGGCATATGCTCCTTGG 59.238 45.455 26.12 0.00 41.70 3.61
3496 7603 2.497273 GTTTTGGCATATGCTCCTTGGT 59.503 45.455 26.12 0.00 41.70 3.67
3497 7604 1.766494 TTGGCATATGCTCCTTGGTG 58.234 50.000 26.12 0.00 41.70 4.17
3498 7605 0.918258 TGGCATATGCTCCTTGGTGA 59.082 50.000 26.12 0.00 41.70 4.02
3499 7606 1.284491 TGGCATATGCTCCTTGGTGAA 59.716 47.619 26.12 0.00 41.70 3.18
3500 7607 1.678101 GGCATATGCTCCTTGGTGAAC 59.322 52.381 26.12 2.18 41.70 3.18
3501 7608 2.368439 GCATATGCTCCTTGGTGAACA 58.632 47.619 20.64 0.00 38.21 3.18
3502 7609 2.357009 GCATATGCTCCTTGGTGAACAG 59.643 50.000 20.64 0.00 38.21 3.16
3503 7610 2.113860 TATGCTCCTTGGTGAACAGC 57.886 50.000 0.00 0.00 0.00 4.40
3504 7611 0.111061 ATGCTCCTTGGTGAACAGCA 59.889 50.000 2.51 2.51 36.99 4.41
3505 7612 0.106769 TGCTCCTTGGTGAACAGCAA 60.107 50.000 16.48 16.48 45.29 3.91
3506 7613 1.251251 GCTCCTTGGTGAACAGCAAT 58.749 50.000 17.45 0.00 46.12 3.56
3507 7614 2.224744 TGCTCCTTGGTGAACAGCAATA 60.225 45.455 17.45 9.71 46.12 1.90
3508 7615 2.819608 GCTCCTTGGTGAACAGCAATAA 59.180 45.455 17.45 9.44 46.12 1.40
3509 7616 3.255642 GCTCCTTGGTGAACAGCAATAAA 59.744 43.478 17.45 7.46 46.12 1.40
3510 7617 4.261994 GCTCCTTGGTGAACAGCAATAAAA 60.262 41.667 17.45 5.52 46.12 1.52
3511 7618 5.738783 GCTCCTTGGTGAACAGCAATAAAAA 60.739 40.000 17.45 4.14 46.12 1.94
3574 7681 4.899516 TGTTAGTGTAACAAACGTGCTTG 58.100 39.130 0.00 0.00 44.95 4.01
3575 7682 2.468532 AGTGTAACAAACGTGCTTGC 57.531 45.000 0.00 0.00 41.43 4.01
3576 7683 1.064952 AGTGTAACAAACGTGCTTGCC 59.935 47.619 0.00 0.00 41.43 4.52
3577 7684 1.095600 TGTAACAAACGTGCTTGCCA 58.904 45.000 0.00 0.00 0.00 4.92
3578 7685 1.472878 TGTAACAAACGTGCTTGCCAA 59.527 42.857 0.00 0.00 0.00 4.52
3579 7686 2.099921 TGTAACAAACGTGCTTGCCAAT 59.900 40.909 0.00 0.00 0.00 3.16
3580 7687 2.307934 AACAAACGTGCTTGCCAATT 57.692 40.000 0.00 0.00 0.00 2.32
3581 7688 2.307934 ACAAACGTGCTTGCCAATTT 57.692 40.000 0.00 0.00 0.00 1.82
3582 7689 2.626840 ACAAACGTGCTTGCCAATTTT 58.373 38.095 0.00 0.00 0.00 1.82
3583 7690 2.607180 ACAAACGTGCTTGCCAATTTTC 59.393 40.909 0.00 0.00 0.00 2.29
3584 7691 2.593346 AACGTGCTTGCCAATTTTCA 57.407 40.000 0.00 0.00 0.00 2.69
3585 7692 2.818130 ACGTGCTTGCCAATTTTCAT 57.182 40.000 0.00 0.00 0.00 2.57
3586 7693 2.406130 ACGTGCTTGCCAATTTTCATG 58.594 42.857 0.00 0.00 0.00 3.07
3587 7694 1.127213 CGTGCTTGCCAATTTTCATGC 59.873 47.619 7.31 7.31 34.96 4.06
3588 7695 1.127213 GTGCTTGCCAATTTTCATGCG 59.873 47.619 8.87 0.00 36.51 4.73
3589 7696 1.000618 TGCTTGCCAATTTTCATGCGA 59.999 42.857 0.00 0.00 36.51 5.10
3590 7697 2.067766 GCTTGCCAATTTTCATGCGAA 58.932 42.857 0.00 0.00 0.00 4.70
3591 7698 2.479656 GCTTGCCAATTTTCATGCGAAA 59.520 40.909 0.00 0.00 39.38 3.46
3592 7699 3.665060 GCTTGCCAATTTTCATGCGAAAC 60.665 43.478 0.00 0.00 40.84 2.78
3593 7700 2.057316 TGCCAATTTTCATGCGAAACG 58.943 42.857 0.00 0.00 40.84 3.60
3594 7701 1.389784 GCCAATTTTCATGCGAAACGG 59.610 47.619 0.00 0.00 40.84 4.44
3595 7702 2.671596 CCAATTTTCATGCGAAACGGT 58.328 42.857 0.00 0.00 40.84 4.83
3596 7703 3.827625 CCAATTTTCATGCGAAACGGTA 58.172 40.909 0.00 0.00 40.84 4.02
3597 7704 4.420168 CCAATTTTCATGCGAAACGGTAT 58.580 39.130 0.00 0.00 40.84 2.73
3598 7705 4.862018 CCAATTTTCATGCGAAACGGTATT 59.138 37.500 0.00 0.00 40.84 1.89
3599 7706 6.030849 CCAATTTTCATGCGAAACGGTATTA 58.969 36.000 0.00 0.00 40.84 0.98
3600 7707 6.196353 CCAATTTTCATGCGAAACGGTATTAG 59.804 38.462 0.00 0.00 40.84 1.73
3601 7708 5.866335 TTTTCATGCGAAACGGTATTAGT 57.134 34.783 0.00 0.00 40.84 2.24
3602 7709 4.850859 TTCATGCGAAACGGTATTAGTG 57.149 40.909 0.00 0.00 0.00 2.74
3603 7710 2.605818 TCATGCGAAACGGTATTAGTGC 59.394 45.455 0.00 0.00 0.00 4.40
3604 7711 2.373540 TGCGAAACGGTATTAGTGCT 57.626 45.000 0.00 0.00 0.00 4.40
3605 7712 2.690786 TGCGAAACGGTATTAGTGCTT 58.309 42.857 0.00 0.00 0.00 3.91
3606 7713 2.669434 TGCGAAACGGTATTAGTGCTTC 59.331 45.455 0.00 0.00 0.00 3.86
3607 7714 2.284855 GCGAAACGGTATTAGTGCTTCG 60.285 50.000 3.68 3.68 35.90 3.79
3608 7715 2.919229 CGAAACGGTATTAGTGCTTCGT 59.081 45.455 0.00 0.00 31.25 3.85
3609 7716 3.001365 CGAAACGGTATTAGTGCTTCGTC 60.001 47.826 0.00 0.00 31.25 4.20
3610 7717 2.184385 ACGGTATTAGTGCTTCGTCG 57.816 50.000 0.00 0.00 0.00 5.12
3611 7718 1.202222 ACGGTATTAGTGCTTCGTCGG 60.202 52.381 0.00 0.00 0.00 4.79
3612 7719 1.202222 CGGTATTAGTGCTTCGTCGGT 60.202 52.381 0.00 0.00 0.00 4.69
3613 7720 2.190981 GGTATTAGTGCTTCGTCGGTG 58.809 52.381 0.00 0.00 0.00 4.94
3614 7721 2.159338 GGTATTAGTGCTTCGTCGGTGA 60.159 50.000 0.00 0.00 0.00 4.02
3615 7722 2.736144 ATTAGTGCTTCGTCGGTGAA 57.264 45.000 0.00 0.00 0.00 3.18
3616 7723 2.512485 TTAGTGCTTCGTCGGTGAAA 57.488 45.000 0.00 0.00 0.00 2.69
3617 7724 2.512485 TAGTGCTTCGTCGGTGAAAA 57.488 45.000 0.00 0.00 0.00 2.29
3618 7725 1.658994 AGTGCTTCGTCGGTGAAAAA 58.341 45.000 0.00 0.00 0.00 1.94
3619 7726 2.218603 AGTGCTTCGTCGGTGAAAAAT 58.781 42.857 0.00 0.00 0.00 1.82
3620 7727 3.395639 AGTGCTTCGTCGGTGAAAAATA 58.604 40.909 0.00 0.00 0.00 1.40
3621 7728 4.000988 AGTGCTTCGTCGGTGAAAAATAT 58.999 39.130 0.00 0.00 0.00 1.28
3622 7729 4.454504 AGTGCTTCGTCGGTGAAAAATATT 59.545 37.500 0.00 0.00 0.00 1.28
3623 7730 5.640357 AGTGCTTCGTCGGTGAAAAATATTA 59.360 36.000 0.00 0.00 0.00 0.98
3624 7731 6.148150 AGTGCTTCGTCGGTGAAAAATATTAA 59.852 34.615 0.00 0.00 0.00 1.40
3625 7732 6.464834 GTGCTTCGTCGGTGAAAAATATTAAG 59.535 38.462 0.00 0.00 0.00 1.85
3626 7733 6.148150 TGCTTCGTCGGTGAAAAATATTAAGT 59.852 34.615 0.00 0.00 0.00 2.24
3627 7734 6.464834 GCTTCGTCGGTGAAAAATATTAAGTG 59.535 38.462 0.00 0.00 0.00 3.16
3628 7735 5.860641 TCGTCGGTGAAAAATATTAAGTGC 58.139 37.500 0.00 0.00 0.00 4.40
3629 7736 5.408909 TCGTCGGTGAAAAATATTAAGTGCA 59.591 36.000 0.00 0.00 0.00 4.57
3630 7737 6.092944 TCGTCGGTGAAAAATATTAAGTGCAT 59.907 34.615 0.00 0.00 0.00 3.96
3631 7738 7.278203 TCGTCGGTGAAAAATATTAAGTGCATA 59.722 33.333 0.00 0.00 0.00 3.14
3632 7739 7.906010 CGTCGGTGAAAAATATTAAGTGCATAA 59.094 33.333 0.00 0.00 0.00 1.90
3633 7740 9.730420 GTCGGTGAAAAATATTAAGTGCATAAT 57.270 29.630 0.00 0.00 0.00 1.28
3659 7766 9.706691 TTTGAAAGTAACATCTATCTTTCGACT 57.293 29.630 10.44 0.00 44.68 4.18
3660 7767 9.706691 TTGAAAGTAACATCTATCTTTCGACTT 57.293 29.630 10.44 0.00 44.68 3.01
3661 7768 9.706691 TGAAAGTAACATCTATCTTTCGACTTT 57.293 29.630 10.44 0.00 44.68 2.66
3681 7788 2.136298 TTTTCTGCCACAGGTCAACA 57.864 45.000 0.00 0.00 31.51 3.33
3682 7789 2.363306 TTTCTGCCACAGGTCAACAT 57.637 45.000 0.00 0.00 31.51 2.71
3683 7790 1.608055 TTCTGCCACAGGTCAACATG 58.392 50.000 0.00 0.00 31.51 3.21
3684 7791 0.890542 TCTGCCACAGGTCAACATGC 60.891 55.000 0.00 0.00 31.51 4.06
3685 7792 0.892358 CTGCCACAGGTCAACATGCT 60.892 55.000 0.00 0.00 0.00 3.79
3686 7793 0.467844 TGCCACAGGTCAACATGCTT 60.468 50.000 0.00 0.00 0.00 3.91
3687 7794 1.202867 TGCCACAGGTCAACATGCTTA 60.203 47.619 0.00 0.00 0.00 3.09
3688 7795 1.885887 GCCACAGGTCAACATGCTTAA 59.114 47.619 0.00 0.00 0.00 1.85
3689 7796 2.095059 GCCACAGGTCAACATGCTTAAG 60.095 50.000 0.00 0.00 0.00 1.85
3690 7797 2.095059 CCACAGGTCAACATGCTTAAGC 60.095 50.000 20.84 20.84 42.50 3.09
3691 7798 2.095059 CACAGGTCAACATGCTTAAGCC 60.095 50.000 24.30 7.02 41.18 4.35
3692 7799 1.474077 CAGGTCAACATGCTTAAGCCC 59.526 52.381 24.30 15.59 41.18 5.19
3693 7800 0.817654 GGTCAACATGCTTAAGCCCC 59.182 55.000 24.30 8.95 41.18 5.80
3694 7801 0.817654 GTCAACATGCTTAAGCCCCC 59.182 55.000 24.30 2.25 41.18 5.40
3716 7823 6.061441 CCCCCTCCCAAAATAAATAAATTGC 58.939 40.000 0.00 0.00 0.00 3.56
3717 7824 6.353429 CCCCCTCCCAAAATAAATAAATTGCA 60.353 38.462 0.00 0.00 0.00 4.08
3718 7825 7.115414 CCCCTCCCAAAATAAATAAATTGCAA 58.885 34.615 0.00 0.00 0.00 4.08
3719 7826 7.613411 CCCCTCCCAAAATAAATAAATTGCAAA 59.387 33.333 1.71 0.00 0.00 3.68
3720 7827 8.458052 CCCTCCCAAAATAAATAAATTGCAAAC 58.542 33.333 1.71 0.00 0.00 2.93
3721 7828 9.007901 CCTCCCAAAATAAATAAATTGCAAACA 57.992 29.630 1.71 0.00 0.00 2.83
3743 7850 9.598517 AAACATTTGTTTGTGAACACATCTATT 57.401 25.926 7.83 0.00 45.01 1.73
3744 7851 9.598517 AACATTTGTTTGTGAACACATCTATTT 57.401 25.926 8.46 0.00 45.01 1.40
3745 7852 9.598517 ACATTTGTTTGTGAACACATCTATTTT 57.401 25.926 8.46 0.00 45.01 1.82
3774 7881 7.872113 AAAAATAACATTTGACCTTGGCAAA 57.128 28.000 0.00 0.00 45.07 3.68
3775 7882 7.872113 AAAATAACATTTGACCTTGGCAAAA 57.128 28.000 0.00 0.00 44.12 2.44
3776 7883 8.462589 AAAATAACATTTGACCTTGGCAAAAT 57.537 26.923 0.00 0.00 44.12 1.82
3777 7884 9.566432 AAAATAACATTTGACCTTGGCAAAATA 57.434 25.926 0.00 0.00 44.12 1.40
3778 7885 8.546597 AATAACATTTGACCTTGGCAAAATAC 57.453 30.769 0.00 0.00 44.12 1.89
3779 7886 5.543507 ACATTTGACCTTGGCAAAATACA 57.456 34.783 0.00 0.00 44.12 2.29
3780 7887 6.112927 ACATTTGACCTTGGCAAAATACAT 57.887 33.333 0.00 0.00 44.12 2.29
3781 7888 6.532826 ACATTTGACCTTGGCAAAATACATT 58.467 32.000 0.00 0.00 44.12 2.71
3782 7889 6.997476 ACATTTGACCTTGGCAAAATACATTT 59.003 30.769 0.00 0.00 44.12 2.32
3783 7890 7.501892 ACATTTGACCTTGGCAAAATACATTTT 59.498 29.630 0.00 0.00 44.12 1.82
3784 7891 7.872113 TTTGACCTTGGCAAAATACATTTTT 57.128 28.000 0.00 0.00 37.63 1.94
3809 7916 3.722147 CACGCAAGAGCATATACTTCCT 58.278 45.455 0.00 0.00 42.27 3.36
3810 7917 4.871513 CACGCAAGAGCATATACTTCCTA 58.128 43.478 0.00 0.00 42.27 2.94
3811 7918 5.473931 CACGCAAGAGCATATACTTCCTAT 58.526 41.667 0.00 0.00 42.27 2.57
3812 7919 6.621613 CACGCAAGAGCATATACTTCCTATA 58.378 40.000 0.00 0.00 42.27 1.31
3813 7920 6.749578 CACGCAAGAGCATATACTTCCTATAG 59.250 42.308 0.00 0.00 42.27 1.31
3814 7921 5.746245 CGCAAGAGCATATACTTCCTATAGC 59.254 44.000 0.00 0.00 42.27 2.97
3815 7922 6.045955 GCAAGAGCATATACTTCCTATAGCC 58.954 44.000 0.00 0.00 41.58 3.93
3816 7923 6.351371 GCAAGAGCATATACTTCCTATAGCCA 60.351 42.308 0.00 0.00 41.58 4.75
3817 7924 7.615403 CAAGAGCATATACTTCCTATAGCCAA 58.385 38.462 0.00 0.00 0.00 4.52
3818 7925 7.798710 AGAGCATATACTTCCTATAGCCAAA 57.201 36.000 0.00 0.00 0.00 3.28
3819 7926 8.207350 AGAGCATATACTTCCTATAGCCAAAA 57.793 34.615 0.00 0.00 0.00 2.44
3820 7927 8.317679 AGAGCATATACTTCCTATAGCCAAAAG 58.682 37.037 0.00 0.00 0.00 2.27
3821 7928 6.881602 AGCATATACTTCCTATAGCCAAAAGC 59.118 38.462 0.00 0.00 44.25 3.51
3834 7941 4.037858 GCCAAAAGCAATATCTGGACAG 57.962 45.455 0.00 0.00 42.97 3.51
3835 7942 3.696051 GCCAAAAGCAATATCTGGACAGA 59.304 43.478 4.26 4.26 42.97 3.41
3836 7943 4.201990 GCCAAAAGCAATATCTGGACAGAG 60.202 45.833 8.14 0.00 40.45 3.35
3837 7944 4.337555 CCAAAAGCAATATCTGGACAGAGG 59.662 45.833 8.14 0.00 41.33 3.69
3838 7945 3.853355 AAGCAATATCTGGACAGAGGG 57.147 47.619 8.14 0.00 41.33 4.30
3839 7946 3.051940 AGCAATATCTGGACAGAGGGA 57.948 47.619 8.14 0.00 41.33 4.20
3840 7947 2.971330 AGCAATATCTGGACAGAGGGAG 59.029 50.000 8.14 0.22 41.33 4.30
3841 7948 2.703007 GCAATATCTGGACAGAGGGAGT 59.297 50.000 8.14 0.00 41.33 3.85
3842 7949 3.494048 GCAATATCTGGACAGAGGGAGTG 60.494 52.174 8.14 6.49 41.33 3.51
3843 7950 3.697190 ATATCTGGACAGAGGGAGTGT 57.303 47.619 8.14 0.00 41.33 3.55
3844 7951 2.334006 ATCTGGACAGAGGGAGTGTT 57.666 50.000 8.14 0.00 41.33 3.32
3845 7952 1.342074 TCTGGACAGAGGGAGTGTTG 58.658 55.000 0.00 0.00 32.82 3.33
3846 7953 0.321122 CTGGACAGAGGGAGTGTTGC 60.321 60.000 0.00 0.00 0.00 4.17
3847 7954 0.764369 TGGACAGAGGGAGTGTTGCT 60.764 55.000 0.00 0.00 0.00 3.91
3848 7955 0.398318 GGACAGAGGGAGTGTTGCTT 59.602 55.000 0.00 0.00 0.00 3.91
3849 7956 1.517242 GACAGAGGGAGTGTTGCTTG 58.483 55.000 0.00 0.00 0.00 4.01
3850 7957 0.839946 ACAGAGGGAGTGTTGCTTGT 59.160 50.000 0.00 0.00 0.00 3.16
3851 7958 1.212935 ACAGAGGGAGTGTTGCTTGTT 59.787 47.619 0.00 0.00 0.00 2.83
3852 7959 1.876156 CAGAGGGAGTGTTGCTTGTTC 59.124 52.381 0.00 0.00 0.00 3.18
3853 7960 1.202818 AGAGGGAGTGTTGCTTGTTCC 60.203 52.381 0.00 0.00 0.00 3.62
3854 7961 0.535102 AGGGAGTGTTGCTTGTTCCG 60.535 55.000 0.00 0.00 0.00 4.30
3855 7962 1.282875 GGAGTGTTGCTTGTTCCGC 59.717 57.895 0.00 0.00 0.00 5.54
3856 7963 1.082756 GAGTGTTGCTTGTTCCGCG 60.083 57.895 0.00 0.00 0.00 6.46
3857 7964 1.495584 GAGTGTTGCTTGTTCCGCGA 61.496 55.000 8.23 0.00 0.00 5.87
3858 7965 1.092921 AGTGTTGCTTGTTCCGCGAA 61.093 50.000 8.23 0.00 0.00 4.70
3859 7966 0.657368 GTGTTGCTTGTTCCGCGAAG 60.657 55.000 8.23 3.90 0.00 3.79
3860 7967 0.812014 TGTTGCTTGTTCCGCGAAGA 60.812 50.000 8.23 0.00 0.00 2.87
3861 7968 0.306533 GTTGCTTGTTCCGCGAAGAA 59.693 50.000 8.23 0.00 0.00 2.52
3862 7969 1.018148 TTGCTTGTTCCGCGAAGAAA 58.982 45.000 8.23 0.09 0.00 2.52
3863 7970 1.018148 TGCTTGTTCCGCGAAGAAAA 58.982 45.000 8.23 0.00 0.00 2.29
3864 7971 1.606668 TGCTTGTTCCGCGAAGAAAAT 59.393 42.857 8.23 0.00 0.00 1.82
3865 7972 1.978782 GCTTGTTCCGCGAAGAAAATG 59.021 47.619 8.23 2.16 0.00 2.32
3866 7973 1.978782 CTTGTTCCGCGAAGAAAATGC 59.021 47.619 8.23 0.00 0.00 3.56
3867 7974 1.234821 TGTTCCGCGAAGAAAATGCT 58.765 45.000 8.23 0.00 0.00 3.79
3868 7975 1.606668 TGTTCCGCGAAGAAAATGCTT 59.393 42.857 8.23 0.00 0.00 3.91
3869 7976 2.242564 GTTCCGCGAAGAAAATGCTTC 58.757 47.619 8.23 0.00 40.62 3.86
3870 7977 0.802494 TCCGCGAAGAAAATGCTTCC 59.198 50.000 8.23 0.00 40.88 3.46
3871 7978 0.804989 CCGCGAAGAAAATGCTTCCT 59.195 50.000 8.23 0.00 40.88 3.36
3872 7979 1.202076 CCGCGAAGAAAATGCTTCCTC 60.202 52.381 8.23 0.00 40.88 3.71
3873 7980 1.527793 CGCGAAGAAAATGCTTCCTCG 60.528 52.381 0.00 1.88 40.88 4.63
3874 7981 1.202076 GCGAAGAAAATGCTTCCTCGG 60.202 52.381 7.15 0.00 40.88 4.63
3875 7982 2.346803 CGAAGAAAATGCTTCCTCGGA 58.653 47.619 0.00 0.00 40.88 4.55
3876 7983 2.349886 CGAAGAAAATGCTTCCTCGGAG 59.650 50.000 0.00 0.00 40.88 4.63
3877 7984 2.409948 AGAAAATGCTTCCTCGGAGG 57.590 50.000 18.25 18.25 36.46 4.30
3878 7985 0.735471 GAAAATGCTTCCTCGGAGGC 59.265 55.000 19.48 12.62 45.73 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 152 2.746904 TGATGCCTTTGTCGGTACATTG 59.253 45.455 0.00 0.00 34.97 2.82
276 293 7.042797 AGTTGTGTTGAAGCTAATGAATGTT 57.957 32.000 0.00 0.00 0.00 2.71
572 592 9.959749 TCATTTAGTTCATTTTTAAGGTGTGTC 57.040 29.630 0.00 0.00 0.00 3.67
625 645 6.600822 ACATGCTAGAAGCTATGTTTTGTCAT 59.399 34.615 0.00 0.00 42.97 3.06
626 646 5.939883 ACATGCTAGAAGCTATGTTTTGTCA 59.060 36.000 0.00 0.00 42.97 3.58
703 764 3.864003 GTGCTCCGGTCAGATAAAACTAC 59.136 47.826 0.00 0.00 0.00 2.73
730 792 5.352284 CGGCTCTATCATTCTACAGTTTGT 58.648 41.667 0.00 0.00 0.00 2.83
731 793 4.210120 GCGGCTCTATCATTCTACAGTTTG 59.790 45.833 0.00 0.00 0.00 2.93
732 794 4.372656 GCGGCTCTATCATTCTACAGTTT 58.627 43.478 0.00 0.00 0.00 2.66
733 795 3.243907 GGCGGCTCTATCATTCTACAGTT 60.244 47.826 0.00 0.00 0.00 3.16
735 797 2.297315 TGGCGGCTCTATCATTCTACAG 59.703 50.000 11.43 0.00 0.00 2.74
796 868 9.203421 CGACTTTTGCCTTCCTTTTATTTATTT 57.797 29.630 0.00 0.00 0.00 1.40
797 869 8.581578 TCGACTTTTGCCTTCCTTTTATTTATT 58.418 29.630 0.00 0.00 0.00 1.40
798 870 8.027189 GTCGACTTTTGCCTTCCTTTTATTTAT 58.973 33.333 8.70 0.00 0.00 1.40
799 871 7.364970 GTCGACTTTTGCCTTCCTTTTATTTA 58.635 34.615 8.70 0.00 0.00 1.40
832 904 2.096174 GGTGTAGTGTCGCTCTACTCTG 59.904 54.545 15.18 0.00 38.67 3.35
860 935 4.101448 CAACTCAGAGGGGGCGGG 62.101 72.222 1.53 0.00 0.00 6.13
861 936 4.785453 GCAACTCAGAGGGGGCGG 62.785 72.222 1.53 0.00 0.00 6.13
864 939 4.785453 GGCGCAACTCAGAGGGGG 62.785 72.222 10.83 3.37 0.00 5.40
1236 1315 2.187424 CAGCAGAGGAGGCAGAGC 59.813 66.667 0.00 0.00 0.00 4.09
1293 1372 3.773418 TGTAAAACCTTCCATCCGACA 57.227 42.857 0.00 0.00 0.00 4.35
1294 1373 4.094442 GTGATGTAAAACCTTCCATCCGAC 59.906 45.833 0.00 0.00 34.22 4.79
1311 1390 0.463654 AAGTGTGGCGTGTGTGATGT 60.464 50.000 0.00 0.00 0.00 3.06
1327 1414 4.023291 TCAAACAAAGGAAGAAGCCAAGT 58.977 39.130 0.00 0.00 0.00 3.16
1427 1514 4.922206 AGCCTGATCAATCCAACTGTAAA 58.078 39.130 0.00 0.00 0.00 2.01
1469 1556 4.023980 CTCTAAAAATCCCTTTCCCCACC 58.976 47.826 0.00 0.00 0.00 4.61
1526 1613 8.753497 ACTCCATATCCCTTTTCAGTTTAATC 57.247 34.615 0.00 0.00 0.00 1.75
1592 1680 6.032094 GCATTTCAGAGTGAATTGTGGTATG 58.968 40.000 11.27 3.40 38.96 2.39
1654 1742 4.537135 TTTAACCACAGGCAACAACAAA 57.463 36.364 0.00 0.00 41.41 2.83
1667 1760 7.696992 TCTACCAGGAATTTCATTTAACCAC 57.303 36.000 0.00 0.00 0.00 4.16
1672 1765 9.618890 CTCATCTTCTACCAGGAATTTCATTTA 57.381 33.333 0.00 0.00 0.00 1.40
1681 1774 4.678256 ACAGTCTCATCTTCTACCAGGAA 58.322 43.478 0.00 0.00 0.00 3.36
1752 1848 6.048509 ACAATTCCATGTTTTGTTCCAGAAC 58.951 36.000 3.52 3.52 41.50 3.01
1807 1911 3.794028 GCTGCAGTTTCTACGACAGATAG 59.206 47.826 16.64 0.00 35.41 2.08
1829 1933 7.981102 AATGATCAGATCAGTACAATCCATG 57.019 36.000 18.13 0.00 43.53 3.66
1854 1958 0.523072 GCTGTGCATCAACCACGAAT 59.477 50.000 0.00 0.00 36.01 3.34
1915 2019 3.077359 GGAGCAAGCAAACATCTAGTGT 58.923 45.455 0.00 0.00 44.84 3.55
1938 2042 6.986904 AAAAGTGCAGTAATTAGGAGTAGC 57.013 37.500 0.00 0.00 0.00 3.58
1981 2085 9.056005 GTACATGCTGGATATTAACTGATCAAA 57.944 33.333 0.00 0.00 0.00 2.69
2060 2164 0.831711 GCCCCTCCAAACACCATGTT 60.832 55.000 0.00 0.00 43.41 2.71
2061 2165 1.228862 GCCCCTCCAAACACCATGT 60.229 57.895 0.00 0.00 0.00 3.21
2074 2178 1.423161 GGCAGAATCAGATAAGCCCCT 59.577 52.381 8.76 0.00 36.17 4.79
2095 2217 5.576447 AAAAGTGTGAATTTCGGAAGTGT 57.424 34.783 0.00 0.00 0.00 3.55
2125 2250 1.939980 AACCTAGACCCACTGAGACC 58.060 55.000 0.00 0.00 0.00 3.85
2154 2279 6.294397 CCTGCAGTCTAGCTTTTGAATCTTTT 60.294 38.462 13.81 0.00 34.99 2.27
2159 2284 2.751806 GCCTGCAGTCTAGCTTTTGAAT 59.248 45.455 13.81 0.00 34.99 2.57
2234 2359 4.662145 GTCCATCCTAAAAGCAAACATCG 58.338 43.478 0.00 0.00 0.00 3.84
2254 2379 0.230769 GCGAACTATGCAGCATCGTC 59.769 55.000 12.38 6.97 36.99 4.20
2256 2381 1.566563 GGCGAACTATGCAGCATCG 59.433 57.895 12.38 11.61 37.44 3.84
2271 2396 1.075542 TAAGCATCTTCAACACGGCG 58.924 50.000 4.80 4.80 0.00 6.46
2371 2496 1.242076 AAGCATCTTCAGCGCAAACT 58.758 45.000 11.47 0.00 37.01 2.66
2894 6750 1.239968 GGTTCTTGGGCACAGCTCAG 61.240 60.000 0.00 0.00 41.35 3.35
2959 6816 1.003580 ACGACAAACAGGGCAGATCAT 59.996 47.619 0.00 0.00 0.00 2.45
2966 6823 2.271800 CATAGAGACGACAAACAGGGC 58.728 52.381 0.00 0.00 0.00 5.19
2976 6833 9.175312 AGTTTATCTTCAGTAACATAGAGACGA 57.825 33.333 0.00 0.00 0.00 4.20
3060 6918 7.148573 CCAAACATGGCGTATCTCATCTTATAC 60.149 40.741 0.00 0.00 0.00 1.47
3061 6919 6.873605 CCAAACATGGCGTATCTCATCTTATA 59.126 38.462 0.00 0.00 0.00 0.98
3062 6920 5.702670 CCAAACATGGCGTATCTCATCTTAT 59.297 40.000 0.00 0.00 0.00 1.73
3152 7010 0.807496 GGCACAGCACCAGAATCTTC 59.193 55.000 0.00 0.00 0.00 2.87
3188 7046 2.726822 AAACCTCGTTCCAGGCCGTC 62.727 60.000 0.00 0.00 36.98 4.79
3270 7352 2.284150 AGATCGACACAACAAACACACG 59.716 45.455 0.00 0.00 0.00 4.49
3310 7398 4.206375 TCAAGGAGAACAGAATTGCACAA 58.794 39.130 0.00 0.00 0.00 3.33
3322 7410 8.498054 TGTCTCATTCATTAATCAAGGAGAAC 57.502 34.615 16.45 11.75 32.56 3.01
3359 7453 7.353525 TGGAGGCTTCTATATTTGGAATCAAA 58.646 34.615 0.00 0.00 45.61 2.69
3414 7521 1.680735 CACTCCCTCTCTCTCATTCCG 59.319 57.143 0.00 0.00 0.00 4.30
3416 7523 3.678529 GCAACACTCCCTCTCTCTCATTC 60.679 52.174 0.00 0.00 0.00 2.67
3460 7567 2.550978 CAAAACTCCGCGTCCATCTAT 58.449 47.619 4.92 0.00 0.00 1.98
3461 7568 1.404986 CCAAAACTCCGCGTCCATCTA 60.405 52.381 4.92 0.00 0.00 1.98
3462 7569 0.673644 CCAAAACTCCGCGTCCATCT 60.674 55.000 4.92 0.00 0.00 2.90
3463 7570 1.794222 CCAAAACTCCGCGTCCATC 59.206 57.895 4.92 0.00 0.00 3.51
3464 7571 2.332654 GCCAAAACTCCGCGTCCAT 61.333 57.895 4.92 0.00 0.00 3.41
3465 7572 2.975799 GCCAAAACTCCGCGTCCA 60.976 61.111 4.92 0.00 0.00 4.02
3466 7573 1.022451 TATGCCAAAACTCCGCGTCC 61.022 55.000 4.92 0.00 0.00 4.79
3467 7574 1.014352 ATATGCCAAAACTCCGCGTC 58.986 50.000 4.92 0.00 0.00 5.19
3468 7575 0.732571 CATATGCCAAAACTCCGCGT 59.267 50.000 4.92 0.00 0.00 6.01
3469 7576 0.592247 GCATATGCCAAAACTCCGCG 60.592 55.000 17.26 0.00 34.31 6.46
3470 7577 0.740737 AGCATATGCCAAAACTCCGC 59.259 50.000 23.96 0.00 43.38 5.54
3471 7578 1.334869 GGAGCATATGCCAAAACTCCG 59.665 52.381 23.96 0.00 43.38 4.63
3472 7579 2.659428 AGGAGCATATGCCAAAACTCC 58.341 47.619 23.96 21.07 43.28 3.85
3473 7580 3.181483 CCAAGGAGCATATGCCAAAACTC 60.181 47.826 23.96 13.30 43.38 3.01
3474 7581 2.762327 CCAAGGAGCATATGCCAAAACT 59.238 45.455 23.96 11.95 43.38 2.66
3475 7582 2.497273 ACCAAGGAGCATATGCCAAAAC 59.503 45.455 23.96 9.91 43.38 2.43
3476 7583 2.496871 CACCAAGGAGCATATGCCAAAA 59.503 45.455 23.96 0.00 43.38 2.44
3477 7584 2.101783 CACCAAGGAGCATATGCCAAA 58.898 47.619 23.96 0.00 43.38 3.28
3478 7585 1.284491 TCACCAAGGAGCATATGCCAA 59.716 47.619 23.96 0.00 43.38 4.52
3479 7586 0.918258 TCACCAAGGAGCATATGCCA 59.082 50.000 23.96 0.00 43.38 4.92
3480 7587 1.678101 GTTCACCAAGGAGCATATGCC 59.322 52.381 23.96 14.86 43.38 4.40
3481 7588 2.357009 CTGTTCACCAAGGAGCATATGC 59.643 50.000 20.36 20.36 42.49 3.14
3482 7589 2.357009 GCTGTTCACCAAGGAGCATATG 59.643 50.000 0.00 0.00 0.00 1.78
3483 7590 2.025981 TGCTGTTCACCAAGGAGCATAT 60.026 45.455 0.00 0.00 34.78 1.78
3484 7591 1.350684 TGCTGTTCACCAAGGAGCATA 59.649 47.619 0.00 0.00 34.78 3.14
3485 7592 0.111061 TGCTGTTCACCAAGGAGCAT 59.889 50.000 0.00 0.00 34.78 3.79
3486 7593 0.106769 TTGCTGTTCACCAAGGAGCA 60.107 50.000 0.00 0.00 37.88 4.26
3487 7594 1.251251 ATTGCTGTTCACCAAGGAGC 58.749 50.000 0.00 0.00 0.00 4.70
3488 7595 5.452078 TTTTATTGCTGTTCACCAAGGAG 57.548 39.130 0.00 0.00 0.00 3.69
3489 7596 5.860941 TTTTTATTGCTGTTCACCAAGGA 57.139 34.783 0.00 0.00 0.00 3.36
3538 7645 9.549078 TGTTACACTAACATGAACATCTACAAA 57.451 29.630 0.00 0.00 43.23 2.83
3539 7646 9.549078 TTGTTACACTAACATGAACATCTACAA 57.451 29.630 0.00 0.00 46.89 2.41
3540 7647 9.549078 TTTGTTACACTAACATGAACATCTACA 57.451 29.630 0.00 0.00 46.89 2.74
3541 7648 9.807386 GTTTGTTACACTAACATGAACATCTAC 57.193 33.333 0.00 0.00 46.89 2.59
3542 7649 8.705134 CGTTTGTTACACTAACATGAACATCTA 58.295 33.333 0.00 0.00 46.89 1.98
3543 7650 7.225931 ACGTTTGTTACACTAACATGAACATCT 59.774 33.333 0.00 0.00 46.89 2.90
3544 7651 7.320324 CACGTTTGTTACACTAACATGAACATC 59.680 37.037 0.00 0.00 46.89 3.06
3545 7652 7.129622 CACGTTTGTTACACTAACATGAACAT 58.870 34.615 0.00 0.00 46.89 2.71
3546 7653 6.479436 CACGTTTGTTACACTAACATGAACA 58.521 36.000 0.00 0.00 46.89 3.18
3547 7654 5.394322 GCACGTTTGTTACACTAACATGAAC 59.606 40.000 0.00 0.00 46.89 3.18
3548 7655 5.294799 AGCACGTTTGTTACACTAACATGAA 59.705 36.000 0.00 0.00 46.89 2.57
3549 7656 4.812091 AGCACGTTTGTTACACTAACATGA 59.188 37.500 0.00 0.00 46.89 3.07
3550 7657 5.090652 AGCACGTTTGTTACACTAACATG 57.909 39.130 0.00 0.00 46.89 3.21
3551 7658 5.507077 CAAGCACGTTTGTTACACTAACAT 58.493 37.500 0.00 0.00 46.89 2.71
3552 7659 4.728307 GCAAGCACGTTTGTTACACTAACA 60.728 41.667 2.19 0.00 46.13 2.41
3553 7660 3.722289 GCAAGCACGTTTGTTACACTAAC 59.278 43.478 2.19 0.00 39.11 2.34
3554 7661 3.242804 GGCAAGCACGTTTGTTACACTAA 60.243 43.478 2.19 0.00 0.00 2.24
3555 7662 2.288458 GGCAAGCACGTTTGTTACACTA 59.712 45.455 2.19 0.00 0.00 2.74
3556 7663 1.064952 GGCAAGCACGTTTGTTACACT 59.935 47.619 2.19 0.00 0.00 3.55
3557 7664 1.202200 TGGCAAGCACGTTTGTTACAC 60.202 47.619 2.19 0.00 0.00 2.90
3558 7665 1.095600 TGGCAAGCACGTTTGTTACA 58.904 45.000 2.19 0.00 0.00 2.41
3559 7666 2.196295 TTGGCAAGCACGTTTGTTAC 57.804 45.000 0.00 0.00 0.00 2.50
3560 7667 3.444703 AATTGGCAAGCACGTTTGTTA 57.555 38.095 5.96 0.00 0.00 2.41
3561 7668 2.307934 AATTGGCAAGCACGTTTGTT 57.692 40.000 5.96 0.00 0.00 2.83
3562 7669 2.307934 AAATTGGCAAGCACGTTTGT 57.692 40.000 5.96 0.00 0.00 2.83
3563 7670 2.606725 TGAAAATTGGCAAGCACGTTTG 59.393 40.909 5.96 0.00 0.00 2.93
3564 7671 2.898705 TGAAAATTGGCAAGCACGTTT 58.101 38.095 5.96 0.00 0.00 3.60
3565 7672 2.593346 TGAAAATTGGCAAGCACGTT 57.407 40.000 5.96 0.00 0.00 3.99
3566 7673 2.406130 CATGAAAATTGGCAAGCACGT 58.594 42.857 5.96 0.00 0.00 4.49
3567 7674 1.127213 GCATGAAAATTGGCAAGCACG 59.873 47.619 5.96 0.00 0.00 5.34
3568 7675 1.127213 CGCATGAAAATTGGCAAGCAC 59.873 47.619 5.96 0.00 0.00 4.40
3569 7676 1.000618 TCGCATGAAAATTGGCAAGCA 59.999 42.857 5.96 1.74 0.00 3.91
3570 7677 1.712401 TCGCATGAAAATTGGCAAGC 58.288 45.000 5.96 0.34 0.00 4.01
3571 7678 3.422085 CGTTTCGCATGAAAATTGGCAAG 60.422 43.478 5.96 0.00 45.22 4.01
3572 7679 2.474359 CGTTTCGCATGAAAATTGGCAA 59.526 40.909 0.68 0.68 45.22 4.52
3573 7680 2.057316 CGTTTCGCATGAAAATTGGCA 58.943 42.857 0.00 0.00 45.22 4.92
3574 7681 1.389784 CCGTTTCGCATGAAAATTGGC 59.610 47.619 0.00 0.00 45.22 4.52
3575 7682 2.671596 ACCGTTTCGCATGAAAATTGG 58.328 42.857 0.00 5.47 45.22 3.16
3576 7683 6.745450 ACTAATACCGTTTCGCATGAAAATTG 59.255 34.615 0.00 0.00 45.22 2.32
3577 7684 6.745450 CACTAATACCGTTTCGCATGAAAATT 59.255 34.615 0.00 0.00 45.22 1.82
3578 7685 6.255215 CACTAATACCGTTTCGCATGAAAAT 58.745 36.000 0.00 0.00 45.22 1.82
3579 7686 5.623335 CACTAATACCGTTTCGCATGAAAA 58.377 37.500 0.00 0.00 45.22 2.29
3580 7687 4.436317 GCACTAATACCGTTTCGCATGAAA 60.436 41.667 0.00 0.00 41.69 2.69
3581 7688 3.062909 GCACTAATACCGTTTCGCATGAA 59.937 43.478 0.00 0.00 0.00 2.57
3582 7689 2.605818 GCACTAATACCGTTTCGCATGA 59.394 45.455 0.00 0.00 0.00 3.07
3583 7690 2.607635 AGCACTAATACCGTTTCGCATG 59.392 45.455 0.00 0.00 0.00 4.06
3584 7691 2.901249 AGCACTAATACCGTTTCGCAT 58.099 42.857 0.00 0.00 0.00 4.73
3585 7692 2.373540 AGCACTAATACCGTTTCGCA 57.626 45.000 0.00 0.00 0.00 5.10
3586 7693 2.284855 CGAAGCACTAATACCGTTTCGC 60.285 50.000 0.00 0.00 36.75 4.70
3587 7694 2.919229 ACGAAGCACTAATACCGTTTCG 59.081 45.455 6.15 6.15 45.23 3.46
3588 7695 3.001365 CGACGAAGCACTAATACCGTTTC 60.001 47.826 0.00 0.00 0.00 2.78
3589 7696 2.919229 CGACGAAGCACTAATACCGTTT 59.081 45.455 0.00 0.00 0.00 3.60
3590 7697 2.523015 CGACGAAGCACTAATACCGTT 58.477 47.619 0.00 0.00 0.00 4.44
3591 7698 1.202222 CCGACGAAGCACTAATACCGT 60.202 52.381 0.00 0.00 0.00 4.83
3592 7699 1.202222 ACCGACGAAGCACTAATACCG 60.202 52.381 0.00 0.00 0.00 4.02
3593 7700 2.159338 TCACCGACGAAGCACTAATACC 60.159 50.000 0.00 0.00 0.00 2.73
3594 7701 3.141002 TCACCGACGAAGCACTAATAC 57.859 47.619 0.00 0.00 0.00 1.89
3595 7702 3.853831 TTCACCGACGAAGCACTAATA 57.146 42.857 0.00 0.00 0.00 0.98
3596 7703 2.736144 TTCACCGACGAAGCACTAAT 57.264 45.000 0.00 0.00 0.00 1.73
3597 7704 2.512485 TTTCACCGACGAAGCACTAA 57.488 45.000 0.00 0.00 0.00 2.24
3598 7705 2.512485 TTTTCACCGACGAAGCACTA 57.488 45.000 0.00 0.00 0.00 2.74
3599 7706 1.658994 TTTTTCACCGACGAAGCACT 58.341 45.000 0.00 0.00 0.00 4.40
3600 7707 2.681152 ATTTTTCACCGACGAAGCAC 57.319 45.000 0.00 0.00 0.00 4.40
3601 7708 6.148150 ACTTAATATTTTTCACCGACGAAGCA 59.852 34.615 0.00 0.00 0.00 3.91
3602 7709 6.464834 CACTTAATATTTTTCACCGACGAAGC 59.535 38.462 0.00 0.00 0.00 3.86
3603 7710 6.464834 GCACTTAATATTTTTCACCGACGAAG 59.535 38.462 0.00 0.00 0.00 3.79
3604 7711 6.073167 TGCACTTAATATTTTTCACCGACGAA 60.073 34.615 0.00 0.00 0.00 3.85
3605 7712 5.408909 TGCACTTAATATTTTTCACCGACGA 59.591 36.000 0.00 0.00 0.00 4.20
3606 7713 5.623335 TGCACTTAATATTTTTCACCGACG 58.377 37.500 0.00 0.00 0.00 5.12
3607 7714 9.730420 ATTATGCACTTAATATTTTTCACCGAC 57.270 29.630 0.00 0.00 0.00 4.79
3633 7740 9.706691 AGTCGAAAGATAGATGTTACTTTCAAA 57.293 29.630 1.74 0.00 44.47 2.69
3634 7741 9.706691 AAGTCGAAAGATAGATGTTACTTTCAA 57.293 29.630 1.74 0.00 44.47 2.69
3635 7742 9.706691 AAAGTCGAAAGATAGATGTTACTTTCA 57.293 29.630 1.74 0.00 44.47 2.69
3661 7768 2.451490 TGTTGACCTGTGGCAGAAAAA 58.549 42.857 0.00 0.00 32.44 1.94
3662 7769 2.136298 TGTTGACCTGTGGCAGAAAA 57.864 45.000 0.00 0.00 32.44 2.29
3663 7770 1.955778 CATGTTGACCTGTGGCAGAAA 59.044 47.619 0.00 0.00 32.44 2.52
3664 7771 1.608055 CATGTTGACCTGTGGCAGAA 58.392 50.000 0.00 0.00 32.44 3.02
3665 7772 0.890542 GCATGTTGACCTGTGGCAGA 60.891 55.000 0.00 0.00 32.44 4.26
3666 7773 0.892358 AGCATGTTGACCTGTGGCAG 60.892 55.000 0.00 0.00 0.00 4.85
3667 7774 0.467844 AAGCATGTTGACCTGTGGCA 60.468 50.000 0.00 0.00 0.00 4.92
3668 7775 1.533625 TAAGCATGTTGACCTGTGGC 58.466 50.000 0.00 0.00 0.00 5.01
3669 7776 2.095059 GCTTAAGCATGTTGACCTGTGG 60.095 50.000 22.59 0.00 41.59 4.17
3670 7777 2.095059 GGCTTAAGCATGTTGACCTGTG 60.095 50.000 27.83 0.00 44.36 3.66
3671 7778 2.162681 GGCTTAAGCATGTTGACCTGT 58.837 47.619 27.83 0.00 44.36 4.00
3672 7779 1.474077 GGGCTTAAGCATGTTGACCTG 59.526 52.381 27.83 0.00 44.36 4.00
3673 7780 1.616994 GGGGCTTAAGCATGTTGACCT 60.617 52.381 27.83 0.00 44.36 3.85
3674 7781 0.817654 GGGGCTTAAGCATGTTGACC 59.182 55.000 27.83 17.22 44.36 4.02
3675 7782 0.817654 GGGGGCTTAAGCATGTTGAC 59.182 55.000 27.83 9.24 44.36 3.18
3676 7783 3.281332 GGGGGCTTAAGCATGTTGA 57.719 52.632 27.83 0.00 44.36 3.18
3692 7799 6.061441 GCAATTTATTTATTTTGGGAGGGGG 58.939 40.000 0.00 0.00 0.00 5.40
3693 7800 6.657875 TGCAATTTATTTATTTTGGGAGGGG 58.342 36.000 0.00 0.00 0.00 4.79
3694 7801 8.458052 GTTTGCAATTTATTTATTTTGGGAGGG 58.542 33.333 0.00 0.00 0.00 4.30
3695 7802 9.007901 TGTTTGCAATTTATTTATTTTGGGAGG 57.992 29.630 0.00 0.00 0.00 4.30
3717 7824 9.598517 AATAGATGTGTTCACAAACAAATGTTT 57.401 25.926 9.68 5.72 46.56 2.83
3718 7825 9.598517 AAATAGATGTGTTCACAAACAAATGTT 57.401 25.926 9.68 0.00 46.56 2.71
3719 7826 9.598517 AAAATAGATGTGTTCACAAACAAATGT 57.401 25.926 9.68 0.00 46.56 2.71
3750 7857 7.872113 TTTGCCAAGGTCAAATGTTATTTTT 57.128 28.000 5.11 0.00 0.00 1.94
3751 7858 7.872113 TTTTGCCAAGGTCAAATGTTATTTT 57.128 28.000 8.70 0.00 33.94 1.82
3752 7859 8.998377 GTATTTTGCCAAGGTCAAATGTTATTT 58.002 29.630 8.70 0.00 33.94 1.40
3753 7860 8.153550 TGTATTTTGCCAAGGTCAAATGTTATT 58.846 29.630 8.70 0.00 33.94 1.40
3754 7861 7.675062 TGTATTTTGCCAAGGTCAAATGTTAT 58.325 30.769 8.70 4.15 33.94 1.89
3755 7862 7.055667 TGTATTTTGCCAAGGTCAAATGTTA 57.944 32.000 8.70 0.00 33.94 2.41
3756 7863 5.923204 TGTATTTTGCCAAGGTCAAATGTT 58.077 33.333 8.70 2.84 33.94 2.71
3757 7864 5.543507 TGTATTTTGCCAAGGTCAAATGT 57.456 34.783 8.70 5.33 33.94 2.71
3758 7865 7.437793 AAATGTATTTTGCCAAGGTCAAATG 57.562 32.000 8.70 0.00 33.94 2.32
3759 7866 8.462589 AAAAATGTATTTTGCCAAGGTCAAAT 57.537 26.923 3.56 6.32 39.70 2.32
3760 7867 7.872113 AAAAATGTATTTTGCCAAGGTCAAA 57.128 28.000 3.56 5.11 39.70 2.69
3781 7888 4.963276 ATATGCTCTTGCGTGCTAAAAA 57.037 36.364 0.00 0.00 43.34 1.94
3782 7889 5.116180 AGTATATGCTCTTGCGTGCTAAAA 58.884 37.500 0.00 0.00 43.34 1.52
3783 7890 4.693283 AGTATATGCTCTTGCGTGCTAAA 58.307 39.130 0.00 0.00 43.34 1.85
3784 7891 4.322080 AGTATATGCTCTTGCGTGCTAA 57.678 40.909 0.00 0.00 43.34 3.09
3785 7892 4.299155 GAAGTATATGCTCTTGCGTGCTA 58.701 43.478 0.00 0.00 43.34 3.49
3786 7893 2.898729 AGTATATGCTCTTGCGTGCT 57.101 45.000 0.00 0.00 43.34 4.40
3787 7894 2.221981 GGAAGTATATGCTCTTGCGTGC 59.778 50.000 0.00 0.00 43.34 5.34
3788 7895 3.722147 AGGAAGTATATGCTCTTGCGTG 58.278 45.455 0.00 0.00 43.34 5.34
3789 7896 5.730296 ATAGGAAGTATATGCTCTTGCGT 57.270 39.130 0.00 0.00 43.34 5.24
3790 7897 5.746245 GCTATAGGAAGTATATGCTCTTGCG 59.254 44.000 1.04 0.00 43.34 4.85
3791 7898 6.045955 GGCTATAGGAAGTATATGCTCTTGC 58.954 44.000 1.04 0.00 40.20 4.01
3792 7899 7.175347 TGGCTATAGGAAGTATATGCTCTTG 57.825 40.000 1.04 0.00 0.00 3.02
3793 7900 7.798710 TTGGCTATAGGAAGTATATGCTCTT 57.201 36.000 1.04 0.00 0.00 2.85
3794 7901 7.798710 TTTGGCTATAGGAAGTATATGCTCT 57.201 36.000 1.04 0.00 0.00 4.09
3795 7902 7.065204 GCTTTTGGCTATAGGAAGTATATGCTC 59.935 40.741 1.04 0.00 38.06 4.26
3796 7903 6.881602 GCTTTTGGCTATAGGAAGTATATGCT 59.118 38.462 1.04 0.00 38.06 3.79
3797 7904 6.655003 TGCTTTTGGCTATAGGAAGTATATGC 59.345 38.462 1.04 0.00 42.39 3.14
3798 7905 8.621532 TTGCTTTTGGCTATAGGAAGTATATG 57.378 34.615 1.04 0.00 42.39 1.78
3801 7908 9.454859 GATATTGCTTTTGGCTATAGGAAGTAT 57.545 33.333 1.04 0.14 40.65 2.12
3802 7909 8.660435 AGATATTGCTTTTGGCTATAGGAAGTA 58.340 33.333 1.04 0.00 40.65 2.24
3803 7910 7.446625 CAGATATTGCTTTTGGCTATAGGAAGT 59.553 37.037 1.04 0.00 40.65 3.01
3804 7911 7.094463 CCAGATATTGCTTTTGGCTATAGGAAG 60.094 40.741 1.04 0.00 40.65 3.46
3805 7912 6.716628 CCAGATATTGCTTTTGGCTATAGGAA 59.283 38.462 1.04 0.00 40.65 3.36
3806 7913 6.044287 TCCAGATATTGCTTTTGGCTATAGGA 59.956 38.462 1.04 0.00 40.65 2.94
3807 7914 6.150140 GTCCAGATATTGCTTTTGGCTATAGG 59.850 42.308 1.04 0.00 40.65 2.57
3808 7915 6.712095 TGTCCAGATATTGCTTTTGGCTATAG 59.288 38.462 0.00 0.00 40.65 1.31
3809 7916 6.600388 TGTCCAGATATTGCTTTTGGCTATA 58.400 36.000 0.00 0.00 41.31 1.31
3810 7917 5.448654 TGTCCAGATATTGCTTTTGGCTAT 58.551 37.500 0.00 0.00 42.39 2.97
3811 7918 4.854173 TGTCCAGATATTGCTTTTGGCTA 58.146 39.130 0.00 0.00 42.39 3.93
3812 7919 3.698040 CTGTCCAGATATTGCTTTTGGCT 59.302 43.478 0.00 0.00 42.39 4.75
3813 7920 3.696051 TCTGTCCAGATATTGCTTTTGGC 59.304 43.478 0.00 0.00 35.37 4.52
3814 7921 4.337555 CCTCTGTCCAGATATTGCTTTTGG 59.662 45.833 0.00 0.00 36.76 3.28
3815 7922 4.337555 CCCTCTGTCCAGATATTGCTTTTG 59.662 45.833 0.00 0.00 36.76 2.44
3816 7923 4.228210 TCCCTCTGTCCAGATATTGCTTTT 59.772 41.667 0.00 0.00 36.76 2.27
3817 7924 3.782523 TCCCTCTGTCCAGATATTGCTTT 59.217 43.478 0.00 0.00 36.76 3.51
3818 7925 3.387962 TCCCTCTGTCCAGATATTGCTT 58.612 45.455 0.00 0.00 36.76 3.91
3819 7926 2.971330 CTCCCTCTGTCCAGATATTGCT 59.029 50.000 0.00 0.00 36.76 3.91
3820 7927 2.703007 ACTCCCTCTGTCCAGATATTGC 59.297 50.000 0.00 0.00 36.76 3.56
3821 7928 3.708631 ACACTCCCTCTGTCCAGATATTG 59.291 47.826 0.00 0.00 36.76 1.90
3822 7929 4.000928 ACACTCCCTCTGTCCAGATATT 57.999 45.455 0.00 0.00 36.76 1.28
3823 7930 3.697190 ACACTCCCTCTGTCCAGATAT 57.303 47.619 0.00 0.00 36.76 1.63
3824 7931 3.099905 CAACACTCCCTCTGTCCAGATA 58.900 50.000 0.00 0.00 36.76 1.98
3825 7932 1.905215 CAACACTCCCTCTGTCCAGAT 59.095 52.381 0.00 0.00 36.76 2.90
3826 7933 1.342074 CAACACTCCCTCTGTCCAGA 58.658 55.000 0.00 0.00 35.85 3.86
3827 7934 0.321122 GCAACACTCCCTCTGTCCAG 60.321 60.000 0.00 0.00 0.00 3.86
3828 7935 0.764369 AGCAACACTCCCTCTGTCCA 60.764 55.000 0.00 0.00 0.00 4.02
3829 7936 0.398318 AAGCAACACTCCCTCTGTCC 59.602 55.000 0.00 0.00 0.00 4.02
3830 7937 1.202698 ACAAGCAACACTCCCTCTGTC 60.203 52.381 0.00 0.00 0.00 3.51
3831 7938 0.839946 ACAAGCAACACTCCCTCTGT 59.160 50.000 0.00 0.00 0.00 3.41
3832 7939 1.876156 GAACAAGCAACACTCCCTCTG 59.124 52.381 0.00 0.00 0.00 3.35
3833 7940 1.202818 GGAACAAGCAACACTCCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
3834 7941 1.239347 GGAACAAGCAACACTCCCTC 58.761 55.000 0.00 0.00 0.00 4.30
3835 7942 0.535102 CGGAACAAGCAACACTCCCT 60.535 55.000 0.00 0.00 0.00 4.20
3836 7943 1.949257 CGGAACAAGCAACACTCCC 59.051 57.895 0.00 0.00 0.00 4.30
3837 7944 1.282875 GCGGAACAAGCAACACTCC 59.717 57.895 0.00 0.00 34.19 3.85
3838 7945 1.082756 CGCGGAACAAGCAACACTC 60.083 57.895 0.00 0.00 34.19 3.51
3839 7946 1.092921 TTCGCGGAACAAGCAACACT 61.093 50.000 6.13 0.00 34.19 3.55
3840 7947 0.657368 CTTCGCGGAACAAGCAACAC 60.657 55.000 6.13 0.00 34.19 3.32
3841 7948 0.812014 TCTTCGCGGAACAAGCAACA 60.812 50.000 6.13 0.00 34.19 3.33
3842 7949 0.306533 TTCTTCGCGGAACAAGCAAC 59.693 50.000 6.13 0.00 34.19 4.17
3843 7950 1.018148 TTTCTTCGCGGAACAAGCAA 58.982 45.000 6.13 0.00 34.19 3.91
3844 7951 1.018148 TTTTCTTCGCGGAACAAGCA 58.982 45.000 6.13 0.00 34.19 3.91
3845 7952 1.978782 CATTTTCTTCGCGGAACAAGC 59.021 47.619 6.13 0.00 0.00 4.01
3846 7953 1.978782 GCATTTTCTTCGCGGAACAAG 59.021 47.619 6.13 1.98 0.00 3.16
3847 7954 1.606668 AGCATTTTCTTCGCGGAACAA 59.393 42.857 6.13 1.26 0.00 2.83
3848 7955 1.234821 AGCATTTTCTTCGCGGAACA 58.765 45.000 6.13 0.00 0.00 3.18
3849 7956 2.242564 GAAGCATTTTCTTCGCGGAAC 58.757 47.619 6.13 0.00 33.93 3.62
3850 7957 1.199097 GGAAGCATTTTCTTCGCGGAA 59.801 47.619 6.13 0.00 42.48 4.30
3851 7958 0.802494 GGAAGCATTTTCTTCGCGGA 59.198 50.000 6.13 0.00 42.48 5.54
3852 7959 0.804989 AGGAAGCATTTTCTTCGCGG 59.195 50.000 6.13 0.00 42.48 6.46
3853 7960 1.527793 CGAGGAAGCATTTTCTTCGCG 60.528 52.381 0.00 0.00 42.48 5.87
3854 7961 1.202076 CCGAGGAAGCATTTTCTTCGC 60.202 52.381 13.70 0.00 43.65 4.70
3855 7962 2.346803 TCCGAGGAAGCATTTTCTTCG 58.653 47.619 12.59 12.59 44.29 3.79
3856 7963 2.680339 CCTCCGAGGAAGCATTTTCTTC 59.320 50.000 9.01 0.00 37.67 2.87
3857 7964 2.716217 CCTCCGAGGAAGCATTTTCTT 58.284 47.619 9.01 0.00 37.67 2.52
3858 7965 1.680249 GCCTCCGAGGAAGCATTTTCT 60.680 52.381 19.33 0.00 37.67 2.52
3859 7966 0.735471 GCCTCCGAGGAAGCATTTTC 59.265 55.000 19.33 0.00 37.67 2.29
3860 7967 1.026718 CGCCTCCGAGGAAGCATTTT 61.027 55.000 19.33 0.00 37.67 1.82
3861 7968 1.450312 CGCCTCCGAGGAAGCATTT 60.450 57.895 19.33 0.00 37.67 2.32
3862 7969 2.187946 CGCCTCCGAGGAAGCATT 59.812 61.111 19.33 0.00 37.67 3.56
3863 7970 3.854669 CCGCCTCCGAGGAAGCAT 61.855 66.667 19.33 0.00 37.67 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.