>input_sequence_41484
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-----------------------------------ATGGCT---GGCGGCGGCGGGTTCCTCGACCTGGAGCGGCACTTC
GCCTTCTACGGCGCGTACCACAGCAACCCGGTCAACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGC
CCTCCTGCTCCTCCACCTCGCCGCCCCGTTCCCGCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCT
CCCTCGACCGCCGCTCCGGCGCGCTCGCCGCCCTGCTCTGCCTCCTCTGCTGGGCCGCCAGCTCCGCCCTCGCCGCCCGA
CTCGGCTTCTCTGTCGGATGGAAGGTTTTACATCACACACG--------CCACACTTGGCTTCTTCCTTTGTTTGACTTT
GTCTTCAGTATTCATCCTTCTCTGATCTGGTGTAGTGGTGATAGGCTATGAGATTTGAGAAGAAAATAACTGATTTACAG
TTGGATTGATCAGGCTATGTGCGCTGAATTTCTGTGGTGGGGAAAGGGATTTTTAGAGTTTGTGGTCATCTTCGTTCAAC
AGCATCAGAGATGA-TTAAACTGAAAAGGGATATGGAGTAATCAAAGCTTGAGACTATTTTATTGACTGCAAATGTCTAC
ATACCACAATTCACTCTGAAATGCATTGTAGTGTACAAAAATTAGATAGCAAGTAGTAAAATTTGTTGTTGCCT-----G
TGGTTAAATGAAATTCCTGGTAGAAGATGAGACTGTTGGTTGTTTGACAGT---TGATTTTATCTTATAGTGTAGCAGAG
AAGTTATGTTCTGGAACAAAACATGGAATTGTTCTGAGGGGAGCTC--------ATATGTAAAATTTCATCTATCTGTCG
TAGAAACTGCAGCATGGATTGTACTGATCTGATCATTATTCGTGGTTGATGCACAGCTCTTTACGTTGAGCTACCTGTAA
CTCGCAATAAACCACACTACACTAGATGTTTGCTTGCTCCTGCTACTCCTAATTACTGCACTTTTAAAGGTCATTACACA
TGATTTTGATCAGTTAATATCCAGCATGTACTTTCATGATTGTGATGGCAAGAAGGCGTCAGCTGTCATAGCATTTTTGT
TGCAACATGGTGTTTGGA------------------GGGGCTTATCTGATTCTGCCACACTTCCGAAATTCACAC---TT
TTTTTATCTGGTCTCAGTGGGTCTAGGTTTCTGAGGCTAAAAGATTCAAAAGCTAGACTGCAGGCACCTACTTGGGGATT
CAATGCCTTTTTCGTCACCCCTGAAATTTTGATTATGTCGATGTTTGCTTTTAGGATGGACGATGCTGCATAGTTCGCCG
TGTTGAAGATGCTTACATGGGGATTCAATCCCTTTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGA
TGAACGATGATGCATAGTTTGCGCTGAAGATGCTTTGTGGCTATAGAAAAGAAGATTACAAAACATAAATCGATCAAGCA
TAAACTCTTTGTTTTTTC----GC--------------------------------------------------------
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---------------------------------------------------------------------AGGTGGTATTG
GTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTATCATATCACGC-TAT
CAATATTAGGTTAAGCACTAGCTATGGAAAATTCTTGCCCAAGGAGTACTAATACTTGACACTTACTCTGATTGTAGAAG
CGGGCACCTGCTCTAATTGACAATCTTGTCCAGGCTTTGATGATGGCCCCATATTTCGTGCTTCTAGAGGTAA-GCATTC
GGAAGCATCATCACTCTGATGATCGACAAGAGATTGATTGCCTTACAAGTCATGACAATCTTGCCGTTTGCTTCAGATTC
TCCACAAGTTTGCTGCGTACGAACCATATCCTGGCTTCCATGCCAATGTGCAGAAGCTGATTGACGCCAAACGCAAGGAG
TGGGCGGACAAGAAAGCAAAGAAGATGTCCTGA-----------------------------------------------
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----
>chr3D_1_TraesCS3D01G431800
ACCCACAAGATCTCGCGACCTACTCATGGCTCTGGCACATGGATAGCAAGCTTCCACACACCCCTGTCCATGGCTAGGAA
AGAAT--AAAAA----------AAAGTTATCAGTACAATTTCCCTAATGAAAAAACACATATATTCTTAGGCAATGTACC
-GACAAAGGCATCACCAATGCATA-ACATAAGTATAT-CATTCATG-ACTATATGTTTGAACCGAAGATATACCTTTTCA
CAAATACATATTTAAATTTAACCATTGTATATTATGCGTTATCAGTGAGAAAAACATTCATTAGCTTCAACACAACTTAC
GCATGAACTAAATTAGCTCAATCCATACTTTTAAAAATTATGATAGTATGAAATGTTTATTTTAAAATCTAAAATACATT
TAAA-TGACAAAATATAGGTTCTCACATATGAAATTATGAATTAGAAAAACCAAGGGCACAAATGCATGCACACAAGTAA
ATACATTCTCGGACCATATTTGTGAATTGA-AAATGTTTTTTTCATAGATACATATTTAAATTTAATGGTTCTATATTAT
TCGTTATTAGTT-AGAAAAATAATGAGTTTTGACACACCTTAAAAATGAACTAAATGAGCTCAATCAATAATTTGAAAAC
TTATAT-----------------------------------------GACAAAACATAGCTTCTAGCATGTGAAATTGTA
AATTGAAAAAATCTAGCCGCGCAAATGCGCGCGGGTGACCCCGGTAGTTTTATCTGACCGGAGCAC-GTCTACAAAC---
-------TGTAGAATGATAGAGCCGCCAGAGCAGTACCAGCGACATGCCCCCGCCTTGTTCTCCGTCAAATAAATAAAAG
GAAGGCAAAAGTCGACGGCAATCC---AGAGTAGAGCGACACTACACCAGCGACCCCGCCCCCTCTGAGTTGCGCCGCCG
TTTCCCCGC-CCGTTCCTCCCGGCGCCGCCCCTCACCCCGCGCTCCGCCTCCGCGGCCTCCTCCGCCGCGCCTTCTCCGT
CTGCGAGCGGCAGCGCCCGATCGACGAATCTCGCGATGGCT---GGCGGCGGCGGGTTCCTCGACCTGGAGCGGCACTTC
GCCTTCTACGGCGCGTACCACAGCAACCCGGTCAACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGC
CCTCCTGCTCCTCCACCTCGCCGCCCCGTTCCCGCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCT
CCCTCGACCGCCGCTCCGGCGCGCTCGCCGCCCTGCTCTGCCTCCTCTGCTGGGCCGCCAGCTCCGCCCTCGCCGCCCGA
CTCGGCTTCTCTGTCGGATGGAAGGTTTTACATCACACACG--------CCACACTTGGCTTCTTCCTTTGTTTGACTTT
GTCTTCAGTATTCATCCTTCTCTGATCTGGTGTAGTGGTGATAGGCTATGAGATTTGAGAAGAAAATAACTGATTTACAG
TTGGATTGATCAGGCTATGTGCGCTGAATTTCTGTGGTGGGGAAAGGGATTTTTAGAGTTTGTGGTCATCTTCGTTCAAC
AGCATCAGAGATGA-TTAAACTGAAAAGGGATATGGAGTAATCAAAGCTTGAGACTATTTTATTGACTGCAAATGTCTAC
ATACCACAATTCACTCTGAAATGCATTGTAGTGTACAAAAATTAGATAGCAAGTAGTAAAATTTGTTGTTGCCT-----G
TGGTTAAATGAAATTCCTGGTAGAAGATGAGACTGTTGGTTGTTTGACAGT---TGATTTTATCTTATAGTGTAGCAGAG
AAGTTATGTTCTGGAACAAAACATGGAATTGTTCTGAGGGGAGCTC--------ATATGTAAAATTTCATCTATCTGTCG
TAGAAACTGCAGCATGGATTGTACTGATCTGATCATTATTCGTGGTTGATGCACAGCTCTTTACGTTGAGCTACCTGTAA
CTCGCAATAAACCACACTACACTAGATGTTTGCTTGCTCCTGCTACTCCTAATTACTGCACTTTTAAAGGTCATTACACA
TGATTTTGATCAGTTAATATCCAGCATGTACTTTCATGATTGTGATGGCAAGAAGGCGTCAGCTGTCATAGCATTTTTGT
TGCAACATGGTGTTTGGA------------------GGGGCTTATCTGATTCTGCCACACTTCCGAAATTCACAC---TT
TTTTTATCTGGTCTCAGTGGGTCTAGGTTTCTGAGGCTAAAAGATTCAAAAGCTAGACTGCAGGCACCTACTTGGGGATT
CAATGCCTTTTTCGTCACCCCTGAAATTTTGATTATGTCGATGTTTGCTTTTAGGATGGACGATGCTGCATAGTTCGCCG
TGTTGAAGATGCTTACATGGGGATTCAATCCCTTTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGA
TGAACGATGATGCATAGTTTGCGCTGAAGATGCTTTGTGGCTATAGAAAAGAAGATTACAAAACATAAATCGATCAAGCA
TAAACTCTTTGTTTTTTC----GC--------------------------------------------------------
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---------------------------------------------------------------------AGGTGGTATTG
GTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTATCATATCACGC-TAT
CAATATTAGGTTAAGCACTAGCTATGGAAAATTCTTGCCCAAGGAGTACTAATACTTGACACTTACTCTGATTGTAGAAG
CGGGCACCTGCTCTAATTGACAATCTTGTCCAGGCTTTGATGATGGCCCCATATTTCGTGCTTCTAGAGGTAA-GCATTC
GGAAGCATCATCACTCTGATGATCGACAAGAGATTGATTGCCTTACAAGTCATGACAATCTTGCCGTTTGCTTCAGATTC
TCCACAAGTTTGCTGCGTACGAACCATATCCTGGCTTCCATGCCAATGTGCAGAAGCTGATTGACGCCAAACGCAAGGAG
TGGGCGGACAAGAAAGCAAAGAAGATGTCCTGAGCTGTGCCCAAGAACCCCTGATGCCTGATGCTACGTCTGCTGTGTAA
CAGCG-AAGATGAGAATGATCTGCCCTGTTTGTCGTCTCTATGTTACTG-AAGATAAACTGAACTGTAGACTGATATCAT
CCTGAGATGTGATACGCTTGTTGTATGACATTGGTACGTATAAGATGAGATACGCCATGTTTGGTGTTGTGTTCGTGTTA
GTGGAGATTTTTTATATAATGAACAGTAAAGTAATAATATATTTTTAATGAAGATTCTGGTGCTGTGCCTGTGGTAAATT
TGACCGACGGCCTGGAACGAGGTTTATGTGTACCGTGGAGGCCCAAACACTGCCAATGTGAGATATGCAGGCTGTCTGCT
TG------------------------------------------------------------------------------
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------------------------------------------------------------------TCATCCGTGTGTTT
GTTGTGTCGATCTTGGTTTTCCGCT------AATTAATTGTGCAATTCTGTTCTCCTTGATTAATGAA------TGAGAC
AAATCATTTACCTTT-GATTCCAAATATAGAAGCCTCCAAAGTTGAAATGCAGG------C------GATCAAAGAGCCC
CGGAATGAGAGAGAGGGAGTGTTGCTTGTTCCGCGAAGAAAACTAAATAGATGGACGCGGAGTTTTGGCATATGCTCCTT
GGTGAACAGCAATAAAAAAATGCATATTAAAAATTCTGAATTTATTTGTAGATGTTCATGTTAGTGTAACAAACGTGCTT
GCCAATTTTCATGCGAAACGGTATTAGTGCTTCGTCGGTGAAAAATATTAAGTGCATAATTTGAAAGTAACATCTATCTT
TCGACTTTTTTTCTGCCACAGGTCAACATGCTTAAGCCCCCCCTCCCAAAATAAATAAATTGCAAACATTTGTTTGTGAA
CACATCTATTTTAAAAAAAAATAACATTTGACCTTGGCAAAATACATTTTTTAGCACGCAAGAGCATATACTTCCTATAG
CCAAAAGCAATATCTGGACAGAGGGAGTGTTGCTTGTTCCGCGAAGAAAATGCTTCCTCGGAGGCGGGCGCCGTAGCCCG
TGAC
>chr3D_1
ACCCACAAGATCTCGCGACCTACTCATGGCTCTGGCACATGGATAGCAAGCTTCCACACACCATTGTCCATGGCTAGGAA
AGAGTAAAAAAA----------AAAGTTATCAGTACAATTTCCCTAATGAAAAAACACATATATTCTTAGGTAATGTACC
-GACAAAGGCATCACCAATGCATA-ACATAAGTATAT-CATTCATG-ACTATATGTTTGAACCGAAGATGTACCTTTTTA
CATATACATATTTAAATTTAACCATTGTATATTATGCGTTATCAGTGAGAAA-GCATTCATTAGCTTCAACACAACTTAC
GCATGAACTAAATTAGCTCAATCCATACTTTTAAAAATTATGATAGTACGAAATGTTTATTTTAAAATCTAAAATACATT
TAAAATGACAAAATATAGGTTCTAACATATGAAATTATGAATTAGAAAAACCGAGGGCACAAATGCATGCCCACAAGTAA
ATACATTCTCGGACCATATTTGTGAATTGA-AAATGTTTTTTTCATACATACATATTTAAATTTAATGGTTCTATATTAT
TCGTTATTAGTT-AAAAAAATAATGAGTTTTAACACACCTTAAGAATGAACTAAATGAGCTCAATCAATAATTTGAAAAC
TTATGATAGA--------------------------------------ACAAAACATAGCTTCTAGCATGTGAAATTGTA
AATTGAAAAAATCTAGCCGTGCAAATGCGCG--GGTGACCCC--------------------------------------
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>chr5B_1
ACCCACAAGATCTCGTGACCAACTCATGACTCTGGCACATGAATAGCAAGCTTCCACGCATTCCTGTCCATGGCTAGGAA
AGAATAAAACAAAAAGGAAATCAAAGTTATCAGTACAATTTCCCTAATGAAAAAACACATATATTCTTAGGTAATGTACC
-GACAAAGGCATCACCAATGCATA-ACATAAGTATAT-CATTCATGGACTATATGTTTGAACCGAAGATGTACCTTTTCA
CAAATACATATTTAAATTTAACCATTGTATATTATTCGTTAACAGTCAAAAA-GCATTCATTAGCTTCAACACACCTTAC
GCATGAACTAAATTAGCTCAATCCATACTTCTAAAAATTATAATAGTATGCGATGTTTATTTTAAAATCTAAAAGACAAT
TAAAATGACAAAATATAGCTTCTAACATATGAAATTATGAATTAAAAAAACCAAGGGCACAAATGCATGCACACAGGTAA
ATACATTCTCGGACCATATTTGTGAATTGA-A----TTTTTTTCATAGATACATGTTCAAATTTAATGGTTCTATATTAT
TCGTTATTATTC-AGAAAAATAATGAGTTTTAACGGACCTAAGGAATGAACTAAATGAGCTCAATAAATAATTTGAAAAC
TTATGATAGGA---------------------------------------CAAACATAGCTTCTAGCATGTGAAATTGTA
AATTGAAAAAATCTAGCCGCGCAATTGCGCG--GGTGACCCCGCTAGTT-------------------------------
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>chr3B_91
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----------------------AAAGTTATCAGTACAATTTCCCTAATCAAAAAACACCTATATACTTGGCTGATGCACT
AGACAAAGGCATCACCAATGCATACACATAAGTACATGCATTCATGGACTATATGTTTCAACTGAAGATGTACCTTTTCA
CAAATACATATTTAAATTGAATCATTTTATATTATTCATTATCAGTCAAAAA-ACCTTCATTAGCTTAAACACCCCTTAC
ACATGAACTAAATTAGCTCAATGCATAATTTTAAAAATTATGATAATATACAATGTTTATTTTAAAATATAAAAGATATT
TAAAATGAAAAAATATAGCTTCTGACATATGAAATTATGAATTT-AAAAATCAAGGGGACAAGTGCATACACACAAGTAC
ATATATTCTTGGACCATATTTCTGAATTGA-AA-TGTTTTTGTCATAGATACATAATTAAATTTAATGGTTCTATAATAT
TCTTTT--AGTCAAGAAAAATTATGAGTTTTAAG---------------ACTAAATGGGCTCATTAGATAATTTTAAAAC
TTATGATAGTATGATGTTTATTTTAAAATGCAAAAAATATTTAACACGACCAAACATAGCTTCTAGCACGTGAAATTGTG
AATTGAAAAA-TCTAGCCGCGCAAATGCGCG--GATGACCCCGCTAGTTATTAT--------------------------
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>chr3B_91
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----------------------AAAGTTATCAGTACAATTTTCCTAATCAAAAAACACCTATACACTTGGCTGATGCACC
GGACAAAGGCATCACCAATGCATACACATAAGTACATGCATTCATGGACTATATGTTTCAACTGAAGATGTACCTTTTCA
CAAATACATATTTAAATTTAATCATTTTATATTATTCATTATCAGTCAAAAA-ACCTTCATTAGCTTCAACACCC-TTAC
GCATGAACTAAATTAGCTCAATGCATAATTTTAAAAGTTATGATAATATACAATTTTTATTTTAAAATGTAAAAGATATT
TAAAATGACAAAATATAGCT------------AATTATGAATTT-AAAAATCAAGGGGATAAGTGCATACACACAAGTAC
ATATATTCTTGGACCATATTTCTGAATTGAAAA-TGTTTTTGTCATAGATACATAATTAAATTTAGTGGTTCCGGATTAT
TCTTTATCAGTCAGGAAAAATTATGAGTTTTAACACACCTTAAGAACAAACTAAATGGGCTCAATAGATAATTGTAAAAC
TTAT----------------------------------------------------------------------------
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>chr3B_704
GTATT---------------------------------------------------------------------------
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-------------------------------------------------TTATTTGACCGGAGCAC-GTCTGACCAAACT
GTAGAAGTGTAGAATGATAGAGCCGCCAGAGCAGTACCAGCGACATGCCCCCGCCTTGTTCTCCGTC----AAATAAAAG
GAAGGCAAAAGTCGACGGCAATCTCTTAGAGTAGAGCGACACTCCTCCCCGCCCTTC----GTACTGTAG-GCGCCGCCG
TTTCCCCCATCCGCTCCTCCCGGCGCCGCCCCTC-----------------------------CGCCGCGCCTTCTCTGT
CCGCGAGCGGCAGCGCCCGATCGGCGAATCTCGCGATGGCTGGCGGCGGCGGCGGGTTCCTCAACCTGGAGCGGCACTTC
GCCTTCTACGGCGCGTACCACAGCAACCCGGTCAACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGC
CCTCCTGCTCCTCCACCTCACCGCCCCGTTCCCGCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCT
CCCTCGACCGCCGCTCGGGCGCCCTCGCCGCCGTCCTCTGCCTCCTCTGCTGGGCCGCCAGCTCCGCCCTCGCCGCCCGA
CTCGGCTTCTCCCTCGGATGGAAGGTTTTGCATCACACAGCCCCGCTCCCCACTCTTGGCTTCTTCCTTTGTTTGGCTTT
GTCTTCAGTATTCGTCCTTCTCTGATCTGGTGTAGTGGTGATAGGCTATGAGATTTGAGAAGAAAATAATTGACTTACAG
TTGGATTGATCAGGCTATGTGCGCTGGATTTCTATAGTGGGGAACGGGATTTTTAGAGTTTGTGGTCATCTTCGTTGAGC
AGCATCAGAGATAA-TTAAACTGAAAAGGGATATGGAGTAATCAAAGCTTGAGGCTATTTTATTGACTGCAAATGTCCAA
ATACCACAATTCACTCTGAAATGCATCGCAGTGTAGCAAAATTTGATAGCAAGTAGTAAAACTTGTTGCTGCCT-----T
TGATGAAATGAAA-TCCTGGTAGAAGATGAGACTGTTGGTTGTTTGACAGT---TGACTTTATCTTATAGTGTAGCAGAG
AAGTTATATTCTGGAACAAAACATGGAATTGTTCTGAGGGGAGCTT--------ATATGTAAAATTTCATGTATCTGTTG
TAGAAACTGCAGTATGGATTGTACTGATCTGATCATTGTTCATGGTTGATGCACAGCTCTTTACGTTGAGCTACCTGTAA
CTCGCAATAAACGACACTGCACTAGATGTTTGCTTGCTCCTTCTACTCCTAATTACTGCACTTTAAAAGGTCATTACACA
TGATATTGATCAGTTAATATCCAGCATGTACTTTCGTGATTGTGATGGCAAGA---------------------------
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-----------------------------------------------------------------ACCTACTTGGGGATT
CAATGCCTTTTTCTTCACCCCTGAAATTTTGATTATGTGGATGTTTGCTTTTAGGATGAAGGATGCTGCATAGTTTGCCG
TGTTGAAGATGCTTACATGGGGATTCAATCCGTTTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGA
TGAATGATGATGCATGGTTTGCGCTGAAGATGCTTTGTGGCTATAGAAAAGACGATTACAAAACATAAATTGTTCAACCA
TAAATTCTTTGTTTTTTTTCCTGC--------------------------------------------------------
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---------------------------------------------------------------------AGGTGGTATTG
GTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTATCATATCACGC-TAT
CAATATTAGGTTAAGCACTAGCTATGGAAAATTCTTGCCCATGGATTATTAATACTTG-CACTTACTCTGATTGTAGAAG
CGGGCACCTGCTCTAGTTGACAACCTTGTCCAGGCTTTGATGATGGCCCCATATTTCGTGCTTCTAGAGGTAAAGCATTC
TGAAGCATCATCACTCTGATGGTCGACAAGAG----ATTGCCTTACAAGTCATGACAATCTTGCCGTTTGCTTCAGATTC
TTCACAAGTTTGTTGCGTACGAACCATATCCTGGTTTCCATGCCAATGTGCAGAAGCTGATTGACGCTAAACGCAAGGAG
TGGGCGGACAAGAAAGCAAAGAAGATGTCATGAGGTGTGACCAAGAACTCCTGATGGCTGATGCTACGTTTGCTGTGTAA
CGGCGTAAGATGAGAGTGCTCTACCCTGGTTGCCGTTTCCATGTTACTG-AAGATAAACTGAACTGTAGACTGATATCAT
CCTGAGATGTGATACGCTTGTTGCATGACATCGGTG----TAAGATGAGATACGCCATGTTTGGTGTTGTGTTCGTGTTA
GTGGAGATTTTTTATATAATGAACAGTAAAGTAATAATACATTTTCAATAAAGAATCTGGTGCTGTGCCTGTGGTAAATT
TGACCAACGGCCTGGAACGAGGTTTACGTGTACCGTGGAGGCCGAAACACTGCCAATGTGAGATATGCAGGCTGTGTGCT
TGTCATCGGTGTTGTTTTTTTAGAAGAACTCGCCAAGCTTTTTATTCCAAAGCAACGTTCATAGGTACAACGGTTGGATC
ATGAGGATATTCCAACCACACATGTCTACCTAATTGCAGGTTACAAGAGAACTTGGCGAGCTTATGAGCCTCATAGTTAT
AGTTTCTACTTTCTACGCTCATGAATGAAATTACAAAGTTGAAAACCACTTCTACGTCCTATTATTTCATCGGTGTGTTT
GTTGTGTCGATCCTGGTTTTCGTTTTCCGTCAATTAACTGTGCAATTCTCCTCTCCTTGATTAATGAA------CGAGAC
AAATCTTTTACCCTTAGATTCCAAATATAGAAGCCTCCAAAGTTGAAATGCAGGTCTCCTC------GATCAAAGAGCCC
TGAAATGAGAGAGAGGGAGTGTTGCTTGT---------------------------------------------------
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>chr3A_708
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-----------------------------------------------TTTCATCTGACCGGAGCACGGTCTGACCAAACT
GTAGAAT----GAATGATAGAGCCGCCAGAGCAGTACCAGCGACATGCCCCCGCCTTGTTCTCTGTC----AAATAAAAG
GAAGGCAAAAGTCGACGGCAATCTCTTAGAGTAGAGCGACACTCCTCCCCGCCCTTCGTAAGTACTGTAG-GCGCCGCCG
TTTCCCCCATCCGTTCCCCCCGGCGCT-----------------------------CCGCCTCGGCCGCGCCTCCTCCGT
CTGCGAGCGGCAGCGCCCGATCGACGAATCCCGCGATGGCCGGCGGCGGCGGCGGGTTCCTCGACCTGGAGCGGCACTTC
GCCTTCTACGGCGCGTACCACAGCAACCCGGTCAACGTCTTCATCCACGCGCTCTTCGTCTGGCCCATCTTCCTCACCGC
CCTCCTGCTCCTCCACATCGCCCCCCCGTTCCCGCGCGCCGCCGCGGTCTTCACCGCCGTCTACGGGGCCTTCTACGTCT
CCCTCGACCGCCGCTCGGGCGCGCTCGCCGCCCTCCTCTGCCTCCTCTGCTGGGGCGCCAGCTCCGCCCTCGCCGCCCGC
CTCGGCTTCTCCCTCGGATGGAAGGTTTTGCATCACACAGCCCCGATCGCCACTCCTGGCTTCTTCCTTTGTTTGACTTT
GTCTTCAGTATTCATCCTTCTCTGATCTGGTGTCGTGGTGATAAGCTATGAGATTTGGGAAGAAAATAATTGACTTGCAG
TTGGATTGATCAGGCTATGTGCGTTGAATTTCTGTAGTGGGGAAAGGGATTTTTAGAGTTTGTGGTCATGTTCGTTCAAC
AGCATCACAGATAACTTAAACTGAAAAGGGATATGGAGTAATCAAAGCTTGAGGCTATTTTATTGACTGCAAATGTCTAA
ATACCACAATTCGCTCTGAAATGCATCGTAGTGTACAAAAATTAGATAGCAAGTAGTAAAACTTGTTGTTGCCTTTGAAT
TGATGAAATGAAA-TCCTGGTAGAAGATGAGACTGTTGGTCGTTTGACAGTTGATGATTTTATCTTATAGTGTAGCAGAG
AAGTTATATTCTGGAACAAAGCATGGAATTGTTCTGAGGGGAGCTCATATAGTCATATGTAAAATTTCATGTATCTGTCG
TAGAA-----------------ACTGATCTGATCATTGTTCGTGGTTGATGCACAGCTCCTTACGTTGAGCTACCTGTAA
CTCGCAATAAACCACACTGCACTAGATGTTTGCTTGCTCCTTCTACTCCTAATTACTGCACTTTTAAAGGTCATTACACA
TGATATTGATCAGTTAATATCCAGCATGTACTTTCATGATTGTGATGGCAAGAAGGCGTCAGCTGTCATAGCATTTTTGT
TGCTCCATGGTGTTTGGGGGATGGGGGGTAAGGGAGGGGGCTTATCTGATTCTGCCGCACTTCCGAAGTTCACGCTTTTT
TTTTTATCTAGTCTCAGTGGGTCTAGGTTTCTGAGGCTTAAAGTTTCAAAAGCTAGACTGCAGGCACCTACTTGCAGATT
CAATGCCTTTTTCGTCACCCCTCAATT----------------TTTGCTTTTAGGATGAAGGATGCTGCATAGTTTGCCG
TGTTGAAGATGCTTACATGGGGATTCAATCCCTTTTTCTTAACTCCTGAAATTTTGATTATGTCGACGTTTGCTTTAGGA
TGAATGATGATGCATGGTTTGCGCTGAAGATGCTTTGTGGCTATAGAAAATTAGATTGCAAAACATAA-TCGATCAAGCA
TAAATTCTTTGTTTTTCC----GC--------------------------------------------------------
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---------------------------------------------------------------------AGGTGGTATTG
GTAGCTCAGCTGTTCTGTTGGACTATGCAATTCATTGGCCATGGAGTTTTTGAGGCAAGTCTCTACCAAGCTACTATTAT
TAATACTAGGTTGAGCACCACCTGTAGAAAATTCTTGCCCAAGGATTACTAATACTTGACACTTACTCTGATTGTAGAAG
CGGGCACCTGCTCTAGTTGACAATCTTGTCCAGGCTTTGTTGATGGCCCCATATTTCGTGCTTCTAGAGGTAC-GCATTC
TGTAGCATCATCACTCTGATAATCGACAAGAT----ATTGCCTTACAAGTCATGCCAATCTTGTTGTTTGCTTCAGATTC
TCCACAAGTTTGCCGCTTATGAACCGTATCCTGGCTTCCATGCCAATGTGCAAAAGCTGATTGACGCCAAACGCAAGGAG
TGGGCGGACAAGAAAGCAAAGAAGATGTCATGAACTGTGCCCAAGAACTCCTGATGCCTGATGCTACGTTTGTTGTGTAA
CAGGGTAAGACGAGAGTGATCTACCCTGTTTGCCATCTCTGTGCTATTGAAAGATGAACTGAACTGTAGACTGATATCAT
CTTGAGATGTGATACGCTTGTTGTATGACATCGGTG----TAAGATGAGATACGCCATGTTTGGTGTTGTGTTCGTGTTG
GGGAAGATTTTTTATAGAATGAACAATAAAGTAATAATATATTTTTAATAAAGATTCTGGTGCTGTGCCTGTGGTAAATT
TGATCAACGGCCTGGAACGAGGTTTATGTGTACCGTGGAGGCCCAAGCA--------------------------CTGCT
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TCATCGGTGTGTTT
GTTGTGTCGATCTTGGTTTTCCGCT------AATTAACTGTGCAATTCCATTCTCCTTAATTAATGAAGGGAAATGAGAC
AAGTCATTTA-CCTTGGATTCCAAATATAGAAGCCTCCAAAGTTGAAATGTAGG------CCTCTTGGATGAAAGAGCCC
TGAAATGAGAGAGAGGGAGTGTTGCTTGTTCCGCGAAGAAAACTAA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr2A_2403
AAAAAAGATC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------ACATAACACAAATTGATTGATCA
TAAATTATTGTTTTTTCTCCTAGGTGGGATTGGTAGTAAAGCTGTTTTGTTGGACTATGTAGTTCATTGGCCATGGAGTT
TTTGAGGCAAATCTCTATCAAGCTATTAATGTTAGGTTAAGCACTAGCTTTAGTAAATTCCTGCCCAAGGATTATACTTG
ACACTTACTCTGACGGTAGAACCGAACACGTGCTCCACTTGACAATATCGTGGTTTTCACGTTTGACCATTGAAAATGAA
AAACAAGTGTTTGGGTATGTGGTGGAAATCCCTCTTACGTGATTTCTAAAAAAGGTTTAATCAAATATTGCATTCATGAA
TAATGGAACTACTAAAATGTGGACATGCTAATTAATTTTTGAGGAACCTAGCACATCAACAACTATCACCTGGCCCATGT
CAAACGTTCACCCCAGCAGACTAACCTGTCAACTACCAAAATGTGGACATGCTAATTTCTGCTTAGTATTCCAATGAGTA
GAGACGAACAATGAATTTATATATTGCATTATCGTAACATTCAAAATAATATTAATTTCGAAAATTGCAGGGATGCGTGT
GACTATTTATATTATTTTATGCTTTGGTGGAACGGTGAAGAATTAGTTCATCCACTGTGCCTAATGAGTATTCTCCATTA
CATATTTTAAGATCTTCGACGTGAATTCTTCGTGCTAATTACATATATTGCTTGTGCAGGTTGGGTATGAGTTGAGGAGG
TTTTTTTAGTTATACTTGTTCAAATTTCATGTGAATGGAGCTAAAGTCTATATTCTTAATATTGTGCGAGAATTTCTTAA
GCGCATCAAATGGATCTTAATTTGTAACTGGTTTTAGTTAGATAATCTCTCTATATGTATAAGTCATCAGATTGCCTTTT
TTGTTATCAATTTACGTTGCAAGTGAAGTTAACTTTAATTATTAGCCGATTTTGCTTGTGCTATCTATTCTCTTCACGTG
AAATTTAACATGTATTATGTTTATATAATTCCAGCAATATATTCAAAACCCGTGGCAACGCACGGGCACTCTACTAGTTT
TACTAAGTTGACACAAGCCTTTGTGGTCCGTTTCCGCCCATTCAATTTTTTGTTCATTCCATTTATCCAAACTAGTAAGC
GTGCACGTGCAACACACGTCCTGCCAATTCAATCCATTTTTCAAATTCCACCTCTATTTAATTTGTATCCTTTTCTATAG
CTTTTGTTTGTCTACACCTTTTTTCAATTCAAACAACTAAAGAAACTAAAAATGGAAATACAATATGTGTTATTCCCCAA
AGAAATAAAATGGGAATGTGATATAGGTAATGAATAGGGAGTATCTAGGATGATAAGTACAACATTTGTCGAAATATCCC
CAGGGCAATAACCTAATTATTTGAAATGCATTGTTTGACAGAGACACAAAAATGAAGAGTTTATTTGAACAGTGCGCAAA
AATGCTCTTCAGATGTATTTTATCAAACAAGGAGTCCGAGTTTGCCAAAATAAAAATTCAGAGCGGTTTGGAAGTATTCT
CATCACTTCTCTTTCTCCGCCTCAGAAGCATTCTTCATCCGGGCTCCCAAACGCTACATCCCTCAGAGCTTTGTCTATAT
AAAGAGTCAAGGTACTAAACATGCATGACATATATGTCCAGTAAGTAATAAAATTAGTTTCTAGCACAATGTCGGAGGAT
TTAAAGATGGGACATTACCGTCTTAGGCAAACCTTGTGGAGACCTTTGTATATTTAATGCATACTTCTGCTTTCATTATT
GGGCTGATGAAGTGAAAGTTGTGAGATAAAATATTCTAAATCTCCTCTAGCTTCTTTAGCAACTATAACCTTCGAGGTCG
ACAATCCACATCTTTGCTTCTCAGGAGAGGCTCCTAGTTGATTTGCTGATGTACAAGGATGCTAATATGAAACAATTATG
CAGCACATGGTAAGTGCTAAGTCGACAATTGGTACTGAATCTACCAGGCTCCAAAGGATCCAATTATGTGATTTTACATG
TGCATCTTAGCTATCAAAGGAAAAGAAGAAAATGGTCAAAGCAACAAAAAAATGCAAGCTTATATAAACTTCACAAAACC
GGGTATGACATTTCAGCCAAGGAAGATTTATTCACTTACGTTCACATGATACAATATGCAAGCAAAAGTTCATGGGCATG
CCCTGACTAAACTATGTGTACACAAAAATAATTATCACCTCCCAACTGCCCTCCTGTTAAATGTGCACAGCAACTAATTG
GCTTAATAGTTATCTCACACTCCCACCAATTTATTAAGAAAACAGAAATCATCCAATGGAACCAGAATTTCAGAACAACT
TAGTCAAGTTTTCCTATGTTGTATACCCTGCCGCTGAAACAAAGCAAATGAGTATAAGCTATGTAAAACAACACCAAGGA
TAGCGGATGAACGAAACAACAAATTCTGCATCCCACGGAACAACACCATTTTATGCAGTATTCACTATCGAAGACCCTCT
ACTCTAAATACTGTGAGATGTGGAGTGTAGTAGAAACATGCTGAACCAACATGAATAGACTCCAAAATTATATGCATACA
TCTTGAAGCATACACTGGAATTTTCAAATTGCCATCCAACCTCCGGGAACTCTTCATGTCAAAAAAGAGAATTATACAAG
ACATGGAAAGGAATAGTAGGCCCGGACCAAATAATTACTAACCTTGAACTGTAGGTTCAGGCCAAATAAAAAAAATAAAA
GATACACAGATATCGGTGAAATTAACTATAATATACACAACTATTATAAAGAGATTTCAGATGCAGATCAACTACATACA
CATAATTTAGTGCCCAAGATTTGGTGTCTTATCAATTGGTCCAAGTTCTCCATGTGGCAGCGCATCTCATTATTATTCTC
TCGTTGCAACAAAAAACAGAAGAATGTTATTTAGTGTCCAGTCAGCAAGTATAAGCTTGAGCTAAAATAATACAAAAAAT
AGGAAGGAAAAGTACTGCAATTTTTACACTTCAAAGCACCACGAATACACCTCATAATCGGATTGGTACAACAATAAGAT
GAAATTATTGCTATGTAATATATTTTTTGTGAAGAGACTTGAAATATCCTAGATTTGATGCTTGTACAAGTTCAGTTAAA
AGTGGTTTAAACAGTCTACAAACTGAACTTATTTTTACTTCCTAGATTAACCAAAAATTGGGGGATTTCACACCAACCGA
ACGTAATAATATACAACAAAAATATTACTCCTTCTGTATACTAATATAAGGCATTTAGATTACTAAATTAGTGATCTAAA
TGCTCTTATATTAGTTTATGGAGGGAGTAGAAGAAAGCAGTGCAAGGGCAGAACAGTACTCCCTCCGTCCCAAAATAAAT
GAAAGACAAAATGGGTCGGTGTGTTGCAGTTGCTCTAACTCCCTGAAATTTTTCATTCATTTGCTTTTAGGATGTAGGAT
GGAGCATAGTTTGTGCTGTTGATTGTCAATTGTACTCCCTCCGTTCCTAAATATAAGCCTTTAGTTTGTGATGTTGAAGA
TGCTTCGTAGTCCTCCTGTTCCTAAATATATGCCTTCTTAGAGATTTCAATATAGAGTATATATGGAGCAAAATGAGTGA
ATCTACACTCTAAAATTTGTCTATATCCATTCGTATGTAGTCCGTAATGAAATATCTAAAAAGGCTTATTTTTAGAAATA
GAGGGAATAACAAACAAAAAAGATCACATAACACAAATTGATTGATCATAAATTATTGTTTTTTCTCCTAGGTGGGATTG
GTAGCAAAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGAGTTTTTGAGGCAAATCTCTATCAAGCTATT-----
-AATGTTAGGTTAAGCACTAGCTTTAGTAAATTCCTGCCCAAGGATT----ATACTTGACACTTACTCTGACGGTAGAAC
CGGACATGTGCTCCACTTGACAAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>SNPs
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------------------------------S----------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------S------------------------------------
----SS--------------------------------------------------------------------------
-------------------------------SS----------S---------------------------SSSS-S---
-------------------------------------------------------------------SSSS---------
-----------------------S-------------------S-S--SSSSS-SS--SSSSSS---SSSS---------
-------SS-------------------------SSSSSSSSSSSSSSSSSSSSSS--S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-----------------S---------------------------------------------
-----------SS----------------S---------SS------------S--------------------------
---------------------------------------------------------------------S---S------
-----------------------------------S--------------------------------------------
------------S----------------------------------------S-------------------------S
--------------------------S----------------------------------S-----------------S
--S-S--------S------------------------------------------------------------------
-------S--------------------------------------------------------------S---------
------------S------------------------S------------------------------------------
------------------S----------------------S--------------------------------------
----S---------------------------------------------------------------------------
---SS------------S--------------------------------------S----------S-----S------
---------S----------------------------S----S------------------------------------
--------------------------------------S-------------------S-S--------------S----
--------------------------------------------------------------------------------
----S----------S----------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------S----------------------------------
---------------S----------------------------------------------------------------
S-------------------------------SSSS--------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S------------------S--------------------S----------
---------------S------S---------S-----------------------------------------------
-------------------------------S---SSSSS----------------------------------------
-------------------------------------------------S------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------------------------------S-----------S------------------------------
------------S-------------------------------------------------------------------
S-S-------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_797
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACCGGAGCACGTCTACAAAC---
--------------------------------------------------------------------------------
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----
>reverse_2379
--------------------------------------------------------------------------------
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----------------------------------------------------------GACGATGCTGCATAGTTCGC--
--------------------------------------------------------------------------------
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----
>forward_904
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCAAAAGTCGACGGCAATCC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2396
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CGCCG
TGTTGAAGATGCTTA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>forward_931
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TAGAGCGACACTACACCAGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_2496
--------------------------------------------------------------------------------
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---------------AGTTTGCGCTGAAGATGCTT---------------------------------------------
--------------------------------------------------------------------------------
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----
>forward_936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GACACTACACCAGCGACCC------------------------
--------------------------------------------------------------------------------
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----
>reverse_6750
--------------------------------------------------------------------------------
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-----------------------------CTGAGCTGTGCCCAAGAACC-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_2217
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGGGCTTATCTGATTCTGCCA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----
>reverse_7593
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TGCTCCTT
GGTGAACAGCAA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
