Multiple sequence alignment - TraesCS3D01G429900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G429900 chr3D 100.000 2711 0 0 1 2711 544352426 544355136 0.000000e+00 5007.0
1 TraesCS3D01G429900 chr3D 84.079 917 106 24 810 1714 544340115 544339227 0.000000e+00 848.0
2 TraesCS3D01G429900 chr3D 83.371 884 109 19 810 1689 544278124 544277275 0.000000e+00 784.0
3 TraesCS3D01G429900 chr3D 86.130 721 93 3 995 1714 544439603 544440317 0.000000e+00 771.0
4 TraesCS3D01G429900 chr3A 93.456 978 40 9 739 1716 681328568 681329521 0.000000e+00 1430.0
5 TraesCS3D01G429900 chr3A 83.572 907 118 15 814 1714 681318934 681318053 0.000000e+00 821.0
6 TraesCS3D01G429900 chr3A 85.477 723 97 5 992 1713 681396042 681396757 0.000000e+00 747.0
7 TraesCS3D01G429900 chr3A 89.748 595 41 6 1895 2483 681330023 681330603 0.000000e+00 743.0
8 TraesCS3D01G429900 chr3A 87.081 209 26 1 2485 2692 681330642 681330850 4.510000e-58 235.0
9 TraesCS3D01G429900 chr3A 93.151 146 5 5 1733 1876 681329594 681329736 2.740000e-50 209.0
10 TraesCS3D01G429900 chr3A 95.455 44 1 1 596 639 681395741 681395783 4.840000e-08 69.4
11 TraesCS3D01G429900 chr3B 92.744 634 35 7 852 1484 720201521 720202144 0.000000e+00 905.0
12 TraesCS3D01G429900 chr3B 82.096 983 146 22 739 1712 720183489 720182528 0.000000e+00 813.0
13 TraesCS3D01G429900 chr3B 82.547 911 118 18 810 1714 720178390 720177515 0.000000e+00 763.0
14 TraesCS3D01G429900 chr3B 87.425 167 9 4 694 855 720190307 720190466 5.960000e-42 182.0
15 TraesCS3D01G429900 chr3B 92.157 51 3 1 589 639 720262761 720262810 1.350000e-08 71.3
16 TraesCS3D01G429900 chr5B 84.426 366 33 10 148 490 532565766 532566130 3.340000e-89 339.0
17 TraesCS3D01G429900 chr2A 84.401 359 34 12 151 487 761284522 761284880 1.560000e-87 333.0
18 TraesCS3D01G429900 chr2A 87.558 217 26 1 2477 2692 16778580 16778364 1.610000e-62 250.0
19 TraesCS3D01G429900 chr7D 84.857 350 30 3 161 487 532895872 532896221 5.590000e-87 331.0
20 TraesCS3D01G429900 chr7D 83.380 361 35 11 151 488 39740303 39740661 7.290000e-81 311.0
21 TraesCS3D01G429900 chr6D 82.480 371 31 6 151 487 319353125 319352755 7.340000e-76 294.0
22 TraesCS3D01G429900 chr7B 82.162 370 34 10 151 488 527858592 527858223 3.420000e-74 289.0
23 TraesCS3D01G429900 chr7B 82.162 370 35 10 149 487 695338831 695339200 3.420000e-74 289.0
24 TraesCS3D01G429900 chr7B 81.481 297 33 6 148 422 692341079 692341375 9.770000e-55 224.0
25 TraesCS3D01G429900 chr7B 82.721 272 26 9 155 405 692252115 692252386 3.510000e-54 222.0
26 TraesCS3D01G429900 chr7B 84.848 165 15 1 333 487 572509532 572509368 1.000000e-34 158.0
27 TraesCS3D01G429900 chr7B 84.091 88 13 1 2128 2215 234519660 234519574 1.730000e-12 84.2
28 TraesCS3D01G429900 chr7B 79.518 83 15 2 2127 2208 682032730 682032811 1.050000e-04 58.4
29 TraesCS3D01G429900 chr4D 82.114 369 34 5 151 487 506622658 506622290 1.230000e-73 287.0
30 TraesCS3D01G429900 chr1D 81.793 368 34 10 151 487 487832776 487832411 7.390000e-71 278.0
31 TraesCS3D01G429900 chrUn 81.471 367 39 7 151 488 141696955 141697321 9.560000e-70 274.0
32 TraesCS3D01G429900 chrUn 84.014 294 25 8 151 422 367622714 367622421 2.070000e-66 263.0
33 TraesCS3D01G429900 chrUn 84.014 294 25 8 151 422 367624674 367624381 2.070000e-66 263.0
34 TraesCS3D01G429900 chr4A 84.014 294 25 8 151 422 730480228 730480521 2.070000e-66 263.0
35 TraesCS3D01G429900 chr4A 84.014 294 25 8 151 422 730560196 730560489 2.070000e-66 263.0
36 TraesCS3D01G429900 chr4A 83.529 255 28 9 144 384 726658916 726659170 2.720000e-55 226.0
37 TraesCS3D01G429900 chr4A 82.500 80 13 1 2127 2206 571643745 571643823 4.840000e-08 69.4
38 TraesCS3D01G429900 chr2B 80.726 358 44 10 154 487 677877612 677877968 3.460000e-64 255.0
39 TraesCS3D01G429900 chr2B 80.645 372 37 6 151 487 775740774 775741145 3.460000e-64 255.0
40 TraesCS3D01G429900 chr2B 86.256 211 23 5 2485 2692 701744916 701745123 9.770000e-55 224.0
41 TraesCS3D01G429900 chr7A 88.350 206 21 3 2489 2692 685459494 685459290 7.500000e-61 244.0
42 TraesCS3D01G429900 chr2D 87.560 209 24 2 2485 2692 582649568 582649775 9.700000e-60 241.0
43 TraesCS3D01G429900 chr5D 88.421 190 21 1 2504 2692 539677513 539677324 7.550000e-56 228.0
44 TraesCS3D01G429900 chr1B 81.605 299 33 6 146 422 99077956 99078254 7.550000e-56 228.0
45 TraesCS3D01G429900 chr1B 81.188 303 34 7 143 422 570441971 570441669 3.510000e-54 222.0
46 TraesCS3D01G429900 chr6B 81.271 299 34 6 146 422 115038855 115038557 3.510000e-54 222.0
47 TraesCS3D01G429900 chr6B 81.419 296 33 6 149 422 633864826 633864531 3.510000e-54 222.0
48 TraesCS3D01G429900 chr5A 87.500 192 23 1 2502 2692 637064474 637064665 1.260000e-53 220.0
49 TraesCS3D01G429900 chr5A 87.151 179 19 2 2511 2689 322587361 322587535 1.650000e-47 200.0
50 TraesCS3D01G429900 chr6A 88.136 177 21 0 2513 2689 562798701 562798877 7.600000e-51 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G429900 chr3D 544352426 544355136 2710 False 5007.00 5007 100.000 1 2711 1 chr3D.!!$F1 2710
1 TraesCS3D01G429900 chr3D 544339227 544340115 888 True 848.00 848 84.079 810 1714 1 chr3D.!!$R2 904
2 TraesCS3D01G429900 chr3D 544277275 544278124 849 True 784.00 784 83.371 810 1689 1 chr3D.!!$R1 879
3 TraesCS3D01G429900 chr3D 544439603 544440317 714 False 771.00 771 86.130 995 1714 1 chr3D.!!$F2 719
4 TraesCS3D01G429900 chr3A 681318053 681318934 881 True 821.00 821 83.572 814 1714 1 chr3A.!!$R1 900
5 TraesCS3D01G429900 chr3A 681328568 681330850 2282 False 654.25 1430 90.859 739 2692 4 chr3A.!!$F1 1953
6 TraesCS3D01G429900 chr3A 681395741 681396757 1016 False 408.20 747 90.466 596 1713 2 chr3A.!!$F2 1117
7 TraesCS3D01G429900 chr3B 720201521 720202144 623 False 905.00 905 92.744 852 1484 1 chr3B.!!$F2 632
8 TraesCS3D01G429900 chr3B 720182528 720183489 961 True 813.00 813 82.096 739 1712 1 chr3B.!!$R2 973
9 TraesCS3D01G429900 chr3B 720177515 720178390 875 True 763.00 763 82.547 810 1714 1 chr3B.!!$R1 904
10 TraesCS3D01G429900 chrUn 367622421 367624674 2253 True 263.00 263 84.014 151 422 2 chrUn.!!$R1 271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 601 0.028902 AAAAACGACACTCCAAGCGC 59.971 50.0 0.0 0.0 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 3027 0.030908 CCTCTGTCTCCCGCGATTAC 59.969 60.0 8.23 0.15 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.627791 CATGTCCGACCTTGCAACA 58.372 52.632 0.00 0.00 0.00 3.33
19 20 1.167851 CATGTCCGACCTTGCAACAT 58.832 50.000 0.00 0.00 0.00 2.71
20 21 1.131126 CATGTCCGACCTTGCAACATC 59.869 52.381 0.00 0.00 0.00 3.06
21 22 0.948623 TGTCCGACCTTGCAACATCG 60.949 55.000 16.96 16.96 0.00 3.84
23 24 2.480555 CGACCTTGCAACATCGGC 59.519 61.111 16.37 4.07 0.00 5.54
24 25 2.324330 CGACCTTGCAACATCGGCA 61.324 57.895 16.37 0.00 40.00 5.69
25 26 1.647545 CGACCTTGCAACATCGGCAT 61.648 55.000 16.37 0.00 41.58 4.40
26 27 0.179156 GACCTTGCAACATCGGCATG 60.179 55.000 0.00 0.00 41.58 4.06
27 28 0.895100 ACCTTGCAACATCGGCATGT 60.895 50.000 0.00 0.00 45.89 3.21
33 34 4.421365 ACATCGGCATGTTGGCTT 57.579 50.000 0.00 0.00 40.66 4.35
34 35 2.657297 ACATCGGCATGTTGGCTTT 58.343 47.368 0.00 0.00 40.66 3.51
35 36 0.968405 ACATCGGCATGTTGGCTTTT 59.032 45.000 0.00 0.00 40.66 2.27
36 37 1.067635 ACATCGGCATGTTGGCTTTTC 60.068 47.619 0.00 0.00 40.66 2.29
37 38 1.067706 CATCGGCATGTTGGCTTTTCA 60.068 47.619 0.00 0.00 41.25 2.69
38 39 0.597568 TCGGCATGTTGGCTTTTCAG 59.402 50.000 0.00 0.00 41.25 3.02
39 40 1.010419 CGGCATGTTGGCTTTTCAGC 61.010 55.000 0.00 0.00 46.52 4.26
50 51 2.929960 GCTTTTCAGCGTTACCCTTTC 58.070 47.619 0.00 0.00 35.91 2.62
51 52 2.664698 GCTTTTCAGCGTTACCCTTTCG 60.665 50.000 0.00 0.00 35.91 3.46
52 53 1.515081 TTTCAGCGTTACCCTTTCGG 58.485 50.000 0.00 0.00 37.81 4.30
53 54 0.952010 TTCAGCGTTACCCTTTCGGC 60.952 55.000 0.00 0.00 33.26 5.54
54 55 1.375523 CAGCGTTACCCTTTCGGCT 60.376 57.895 0.00 0.00 33.26 5.52
55 56 0.953960 CAGCGTTACCCTTTCGGCTT 60.954 55.000 0.00 0.00 33.26 4.35
56 57 0.250597 AGCGTTACCCTTTCGGCTTT 60.251 50.000 0.00 0.00 33.26 3.51
57 58 0.109919 GCGTTACCCTTTCGGCTTTG 60.110 55.000 0.00 0.00 33.26 2.77
58 59 0.109919 CGTTACCCTTTCGGCTTTGC 60.110 55.000 0.00 0.00 33.26 3.68
59 60 0.109919 GTTACCCTTTCGGCTTTGCG 60.110 55.000 0.00 0.00 33.26 4.85
60 61 1.238625 TTACCCTTTCGGCTTTGCGG 61.239 55.000 0.00 0.00 33.26 5.69
61 62 2.400269 TACCCTTTCGGCTTTGCGGT 62.400 55.000 0.00 0.00 33.26 5.68
62 63 1.673009 CCCTTTCGGCTTTGCGGTA 60.673 57.895 0.00 0.00 0.00 4.02
63 64 1.644786 CCCTTTCGGCTTTGCGGTAG 61.645 60.000 0.00 0.00 0.00 3.18
64 65 1.134694 CTTTCGGCTTTGCGGTAGC 59.865 57.895 0.00 0.00 45.41 3.58
74 75 4.097863 GCGGTAGCGGCAAACACC 62.098 66.667 17.08 2.92 0.00 4.16
83 84 2.105930 GCAAACACCGCCTTGCAA 59.894 55.556 0.00 0.00 45.81 4.08
84 85 2.237066 GCAAACACCGCCTTGCAAC 61.237 57.895 0.00 0.00 45.81 4.17
85 86 1.140589 CAAACACCGCCTTGCAACA 59.859 52.632 0.00 0.00 0.00 3.33
86 87 0.249405 CAAACACCGCCTTGCAACAT 60.249 50.000 0.00 0.00 0.00 2.71
87 88 0.463620 AAACACCGCCTTGCAACATT 59.536 45.000 0.00 0.00 0.00 2.71
88 89 0.031994 AACACCGCCTTGCAACATTC 59.968 50.000 0.00 0.00 0.00 2.67
89 90 1.106351 ACACCGCCTTGCAACATTCA 61.106 50.000 0.00 0.00 0.00 2.57
90 91 0.664166 CACCGCCTTGCAACATTCAC 60.664 55.000 0.00 0.00 0.00 3.18
91 92 1.106351 ACCGCCTTGCAACATTCACA 61.106 50.000 0.00 0.00 0.00 3.58
92 93 0.244450 CCGCCTTGCAACATTCACAT 59.756 50.000 0.00 0.00 0.00 3.21
93 94 1.621107 CGCCTTGCAACATTCACATC 58.379 50.000 0.00 0.00 0.00 3.06
94 95 1.200716 CGCCTTGCAACATTCACATCT 59.799 47.619 0.00 0.00 0.00 2.90
95 96 2.730090 CGCCTTGCAACATTCACATCTC 60.730 50.000 0.00 0.00 0.00 2.75
96 97 2.730090 GCCTTGCAACATTCACATCTCG 60.730 50.000 0.00 0.00 0.00 4.04
97 98 2.159476 CCTTGCAACATTCACATCTCGG 60.159 50.000 0.00 0.00 0.00 4.63
98 99 0.804364 TGCAACATTCACATCTCGGC 59.196 50.000 0.00 0.00 0.00 5.54
99 100 0.099436 GCAACATTCACATCTCGGCC 59.901 55.000 0.00 0.00 0.00 6.13
100 101 1.452110 CAACATTCACATCTCGGCCA 58.548 50.000 2.24 0.00 0.00 5.36
101 102 1.399440 CAACATTCACATCTCGGCCAG 59.601 52.381 2.24 0.00 0.00 4.85
102 103 0.615331 ACATTCACATCTCGGCCAGT 59.385 50.000 2.24 0.00 0.00 4.00
103 104 1.831106 ACATTCACATCTCGGCCAGTA 59.169 47.619 2.24 0.00 0.00 2.74
104 105 2.205074 CATTCACATCTCGGCCAGTAC 58.795 52.381 2.24 0.00 0.00 2.73
105 106 0.535335 TTCACATCTCGGCCAGTACC 59.465 55.000 2.24 0.00 0.00 3.34
106 107 0.613572 TCACATCTCGGCCAGTACCA 60.614 55.000 2.24 0.00 0.00 3.25
107 108 0.465705 CACATCTCGGCCAGTACCAT 59.534 55.000 2.24 0.00 0.00 3.55
108 109 0.753262 ACATCTCGGCCAGTACCATC 59.247 55.000 2.24 0.00 0.00 3.51
109 110 0.319040 CATCTCGGCCAGTACCATCG 60.319 60.000 2.24 0.00 0.00 3.84
110 111 0.755698 ATCTCGGCCAGTACCATCGT 60.756 55.000 2.24 0.00 0.00 3.73
111 112 1.065928 CTCGGCCAGTACCATCGTC 59.934 63.158 2.24 0.00 0.00 4.20
112 113 1.663379 CTCGGCCAGTACCATCGTCA 61.663 60.000 2.24 0.00 0.00 4.35
113 114 1.518572 CGGCCAGTACCATCGTCAC 60.519 63.158 2.24 0.00 0.00 3.67
114 115 1.153429 GGCCAGTACCATCGTCACC 60.153 63.158 0.00 0.00 0.00 4.02
115 116 1.153429 GCCAGTACCATCGTCACCC 60.153 63.158 0.00 0.00 0.00 4.61
116 117 1.141019 CCAGTACCATCGTCACCCG 59.859 63.158 0.00 0.00 38.13 5.28
117 118 1.141019 CAGTACCATCGTCACCCGG 59.859 63.158 0.00 0.00 37.11 5.73
118 119 2.202837 GTACCATCGTCACCCGGC 60.203 66.667 0.00 0.00 37.11 6.13
119 120 3.463585 TACCATCGTCACCCGGCC 61.464 66.667 0.00 0.00 37.11 6.13
120 121 3.968837 TACCATCGTCACCCGGCCT 62.969 63.158 0.00 0.00 37.11 5.19
121 122 4.530857 CCATCGTCACCCGGCCTC 62.531 72.222 0.00 0.00 37.11 4.70
122 123 4.873129 CATCGTCACCCGGCCTCG 62.873 72.222 0.00 0.00 37.11 4.63
139 140 4.704007 GCAGCATTGCGATTCTGG 57.296 55.556 14.46 0.00 41.13 3.86
140 141 1.588139 GCAGCATTGCGATTCTGGC 60.588 57.895 14.46 1.08 41.13 4.85
141 142 2.001361 GCAGCATTGCGATTCTGGCT 62.001 55.000 14.46 3.43 41.13 4.75
142 143 0.454600 CAGCATTGCGATTCTGGCTT 59.545 50.000 5.73 0.00 0.00 4.35
143 144 0.454600 AGCATTGCGATTCTGGCTTG 59.545 50.000 2.38 0.00 0.00 4.01
144 145 0.452987 GCATTGCGATTCTGGCTTGA 59.547 50.000 0.00 0.00 0.00 3.02
145 146 1.135315 GCATTGCGATTCTGGCTTGAA 60.135 47.619 0.00 0.00 0.00 2.69
146 147 2.793933 CATTGCGATTCTGGCTTGAAG 58.206 47.619 0.00 0.00 0.00 3.02
147 148 1.167851 TTGCGATTCTGGCTTGAAGG 58.832 50.000 0.00 0.00 0.00 3.46
148 149 0.324614 TGCGATTCTGGCTTGAAGGA 59.675 50.000 0.00 0.00 0.00 3.36
149 150 1.012841 GCGATTCTGGCTTGAAGGAG 58.987 55.000 0.00 0.00 0.00 3.69
170 171 2.299521 CAAGGTTTTGGTTACCGGTCA 58.700 47.619 12.40 0.00 40.69 4.02
178 179 6.457122 GGTTTTGGTTACCGGTCAAAATTTTG 60.457 38.462 26.20 22.40 40.80 2.44
197 198 4.666412 TTGAGATTTCCCATGGTTACCA 57.334 40.909 6.53 6.53 38.19 3.25
215 216 3.148340 ACGTATTTCCGTGCCCTTC 57.852 52.632 0.00 0.00 40.08 3.46
220 222 1.734163 ATTTCCGTGCCCTTCGTAAG 58.266 50.000 0.00 0.00 0.00 2.34
223 225 1.447314 CCGTGCCCTTCGTAAGTCC 60.447 63.158 0.00 0.00 39.48 3.85
332 355 4.182693 TGGTTCTGACGTATTGGTACTG 57.817 45.455 0.00 0.00 0.00 2.74
354 377 4.825634 TGTTTTGAGAGGTCTCTAGTTCGA 59.174 41.667 8.44 0.00 43.25 3.71
357 380 5.568685 TTGAGAGGTCTCTAGTTCGAATG 57.431 43.478 0.00 0.00 43.25 2.67
422 445 7.760131 AATTCGTTCGAAATATTCTCGGTAA 57.240 32.000 11.50 5.66 36.93 2.85
423 446 6.559042 TTCGTTCGAAATATTCTCGGTAAC 57.441 37.500 0.00 12.84 36.93 2.50
424 447 5.036737 TCGTTCGAAATATTCTCGGTAACC 58.963 41.667 0.00 0.00 36.93 2.85
429 452 4.980434 CGAAATATTCTCGGTAACCGTGAT 59.020 41.667 0.00 0.00 46.35 3.06
430 453 6.017192 TCGAAATATTCTCGGTAACCGTGATA 60.017 38.462 15.30 0.00 46.35 2.15
431 454 6.638063 CGAAATATTCTCGGTAACCGTGATAA 59.362 38.462 0.00 0.00 46.35 1.75
432 455 7.357859 CGAAATATTCTCGGTAACCGTGATAAC 60.358 40.741 0.00 0.00 46.35 1.89
433 456 3.508744 TTCTCGGTAACCGTGATAACC 57.491 47.619 0.00 0.00 46.35 2.85
434 457 2.824936 TTCTCGGTAACCGTGATAACCA 59.175 45.455 0.00 0.00 46.35 3.67
435 458 3.448301 TTCTCGGTAACCGTGATAACCAT 59.552 43.478 0.00 0.00 46.35 3.55
436 459 4.678574 TTCTCGGTAACCGTGATAACCATG 60.679 45.833 0.00 0.00 46.35 3.66
437 460 2.896168 CGGTAACCGTGATAACCATGT 58.104 47.619 0.00 0.00 42.73 3.21
438 461 3.264104 CGGTAACCGTGATAACCATGTT 58.736 45.455 0.00 0.00 42.73 2.71
439 462 3.685756 CGGTAACCGTGATAACCATGTTT 59.314 43.478 0.00 0.00 42.73 2.83
440 463 4.869297 CGGTAACCGTGATAACCATGTTTA 59.131 41.667 0.00 0.00 42.73 2.01
441 464 5.524646 CGGTAACCGTGATAACCATGTTTAT 59.475 40.000 0.00 0.00 42.73 1.40
442 465 6.292488 CGGTAACCGTGATAACCATGTTTATC 60.292 42.308 14.33 14.33 42.73 1.75
443 466 6.539464 GGTAACCGTGATAACCATGTTTATCA 59.461 38.462 18.64 18.64 43.25 2.15
444 467 6.677781 AACCGTGATAACCATGTTTATCAG 57.322 37.500 21.91 15.16 45.10 2.90
445 468 5.741011 ACCGTGATAACCATGTTTATCAGT 58.259 37.500 21.91 15.69 45.10 3.41
446 469 6.177610 ACCGTGATAACCATGTTTATCAGTT 58.822 36.000 21.91 9.55 45.10 3.16
447 470 6.315393 ACCGTGATAACCATGTTTATCAGTTC 59.685 38.462 21.91 12.07 45.10 3.01
448 471 6.238374 CCGTGATAACCATGTTTATCAGTTCC 60.238 42.308 21.91 11.78 45.10 3.62
449 472 6.238374 CGTGATAACCATGTTTATCAGTTCCC 60.238 42.308 21.91 11.49 45.10 3.97
450 473 6.039382 GTGATAACCATGTTTATCAGTTCCCC 59.961 42.308 21.91 8.91 45.10 4.81
451 474 4.675063 AACCATGTTTATCAGTTCCCCT 57.325 40.909 0.00 0.00 0.00 4.79
452 475 4.236527 ACCATGTTTATCAGTTCCCCTC 57.763 45.455 0.00 0.00 0.00 4.30
453 476 3.591527 ACCATGTTTATCAGTTCCCCTCA 59.408 43.478 0.00 0.00 0.00 3.86
454 477 4.202441 CCATGTTTATCAGTTCCCCTCAG 58.798 47.826 0.00 0.00 0.00 3.35
455 478 4.324563 CCATGTTTATCAGTTCCCCTCAGT 60.325 45.833 0.00 0.00 0.00 3.41
456 479 5.104527 CCATGTTTATCAGTTCCCCTCAGTA 60.105 44.000 0.00 0.00 0.00 2.74
457 480 6.414732 CATGTTTATCAGTTCCCCTCAGTAA 58.585 40.000 0.00 0.00 0.00 2.24
458 481 6.442541 TGTTTATCAGTTCCCCTCAGTAAA 57.557 37.500 0.00 0.00 0.00 2.01
459 482 6.843752 TGTTTATCAGTTCCCCTCAGTAAAA 58.156 36.000 0.00 0.00 0.00 1.52
460 483 7.466804 TGTTTATCAGTTCCCCTCAGTAAAAT 58.533 34.615 0.00 0.00 0.00 1.82
461 484 7.947890 TGTTTATCAGTTCCCCTCAGTAAAATT 59.052 33.333 0.00 0.00 0.00 1.82
462 485 8.803235 GTTTATCAGTTCCCCTCAGTAAAATTT 58.197 33.333 0.00 0.00 0.00 1.82
463 486 8.575649 TTATCAGTTCCCCTCAGTAAAATTTC 57.424 34.615 0.00 0.00 0.00 2.17
464 487 5.321927 TCAGTTCCCCTCAGTAAAATTTCC 58.678 41.667 0.00 0.00 0.00 3.13
465 488 5.074515 TCAGTTCCCCTCAGTAAAATTTCCT 59.925 40.000 0.00 0.00 0.00 3.36
466 489 5.416013 CAGTTCCCCTCAGTAAAATTTCCTC 59.584 44.000 0.00 0.00 0.00 3.71
467 490 5.074515 AGTTCCCCTCAGTAAAATTTCCTCA 59.925 40.000 0.00 0.00 0.00 3.86
468 491 5.796502 TCCCCTCAGTAAAATTTCCTCAT 57.203 39.130 0.00 0.00 0.00 2.90
469 492 6.152638 TCCCCTCAGTAAAATTTCCTCATT 57.847 37.500 0.00 0.00 0.00 2.57
470 493 5.951747 TCCCCTCAGTAAAATTTCCTCATTG 59.048 40.000 0.00 0.00 0.00 2.82
471 494 5.127682 CCCCTCAGTAAAATTTCCTCATTGG 59.872 44.000 0.00 0.00 37.10 3.16
472 495 5.127682 CCCTCAGTAAAATTTCCTCATTGGG 59.872 44.000 0.00 0.00 36.20 4.12
473 496 5.716703 CCTCAGTAAAATTTCCTCATTGGGT 59.283 40.000 0.00 0.00 36.20 4.51
474 497 6.889722 CCTCAGTAAAATTTCCTCATTGGGTA 59.110 38.462 0.00 0.00 36.20 3.69
475 498 7.396055 CCTCAGTAAAATTTCCTCATTGGGTAA 59.604 37.037 0.00 0.00 36.20 2.85
476 499 8.117813 TCAGTAAAATTTCCTCATTGGGTAAC 57.882 34.615 0.00 0.00 36.20 2.50
491 514 3.106242 GGTAACCAAAACCTTGCCAAG 57.894 47.619 0.00 0.00 33.97 3.61
503 526 3.252974 CTTGCCAAGGAGTAGTGGTAG 57.747 52.381 0.00 0.00 37.23 3.18
504 527 0.902531 TGCCAAGGAGTAGTGGTAGC 59.097 55.000 0.00 0.00 37.23 3.58
505 528 0.902531 GCCAAGGAGTAGTGGTAGCA 59.097 55.000 0.00 0.00 37.23 3.49
506 529 1.134670 GCCAAGGAGTAGTGGTAGCAG 60.135 57.143 0.00 0.00 37.23 4.24
507 530 1.134670 CCAAGGAGTAGTGGTAGCAGC 60.135 57.143 0.00 0.00 0.00 5.25
508 531 1.550524 CAAGGAGTAGTGGTAGCAGCA 59.449 52.381 0.00 0.00 0.00 4.41
509 532 1.479709 AGGAGTAGTGGTAGCAGCAG 58.520 55.000 0.00 0.00 0.00 4.24
510 533 0.179097 GGAGTAGTGGTAGCAGCAGC 60.179 60.000 0.00 0.00 42.56 5.25
511 534 0.532573 GAGTAGTGGTAGCAGCAGCA 59.467 55.000 3.17 0.00 45.49 4.41
512 535 0.976641 AGTAGTGGTAGCAGCAGCAA 59.023 50.000 3.17 0.00 45.49 3.91
513 536 1.556911 AGTAGTGGTAGCAGCAGCAAT 59.443 47.619 3.17 0.00 45.49 3.56
514 537 1.667724 GTAGTGGTAGCAGCAGCAATG 59.332 52.381 3.17 0.00 45.49 2.82
515 538 1.138247 GTGGTAGCAGCAGCAATGC 59.862 57.895 3.17 0.00 45.49 3.56
526 549 2.711924 GCAATGCGCTACTGCTCC 59.288 61.111 9.73 0.00 37.77 4.70
527 550 2.828128 GCAATGCGCTACTGCTCCC 61.828 63.158 9.73 0.00 37.77 4.30
528 551 2.182842 CAATGCGCTACTGCTCCCC 61.183 63.158 9.73 0.00 36.97 4.81
529 552 3.740128 AATGCGCTACTGCTCCCCG 62.740 63.158 9.73 0.00 36.97 5.73
532 555 3.227276 CGCTACTGCTCCCCGGAT 61.227 66.667 0.73 0.00 36.97 4.18
533 556 2.423446 GCTACTGCTCCCCGGATG 59.577 66.667 0.73 0.00 36.03 3.51
534 557 2.134287 GCTACTGCTCCCCGGATGA 61.134 63.158 0.73 0.00 36.03 2.92
535 558 2.045280 CTACTGCTCCCCGGATGAG 58.955 63.158 0.73 10.05 0.00 2.90
536 559 0.757188 CTACTGCTCCCCGGATGAGT 60.757 60.000 18.51 9.06 32.31 3.41
537 560 1.043116 TACTGCTCCCCGGATGAGTG 61.043 60.000 18.51 14.61 32.31 3.51
538 561 3.083349 TGCTCCCCGGATGAGTGG 61.083 66.667 18.51 4.54 32.31 4.00
539 562 2.764128 GCTCCCCGGATGAGTGGA 60.764 66.667 18.51 8.44 32.31 4.02
540 563 3.095347 GCTCCCCGGATGAGTGGAC 62.095 68.421 18.51 2.81 32.31 4.02
541 564 2.365105 TCCCCGGATGAGTGGACC 60.365 66.667 0.73 0.00 0.00 4.46
542 565 3.849951 CCCCGGATGAGTGGACCG 61.850 72.222 0.73 0.00 45.24 4.79
547 570 2.889200 GGATGAGTGGACCGAGTCT 58.111 57.895 4.41 0.00 32.47 3.24
548 571 0.741915 GGATGAGTGGACCGAGTCTC 59.258 60.000 4.41 0.00 32.47 3.36
549 572 1.464734 GATGAGTGGACCGAGTCTCA 58.535 55.000 0.00 9.68 40.43 3.27
550 573 2.028130 GATGAGTGGACCGAGTCTCAT 58.972 52.381 15.94 15.94 46.11 2.90
551 574 1.464734 TGAGTGGACCGAGTCTCATC 58.535 55.000 0.00 0.00 32.95 2.92
552 575 0.378962 GAGTGGACCGAGTCTCATCG 59.621 60.000 0.00 0.00 42.36 3.84
553 576 1.226717 GTGGACCGAGTCTCATCGC 60.227 63.158 0.00 0.00 41.37 4.58
554 577 2.413765 GGACCGAGTCTCATCGCC 59.586 66.667 0.00 0.00 41.37 5.54
555 578 2.024871 GACCGAGTCTCATCGCCG 59.975 66.667 0.00 0.00 41.37 6.46
556 579 4.194720 ACCGAGTCTCATCGCCGC 62.195 66.667 0.00 0.00 41.37 6.53
557 580 4.193334 CCGAGTCTCATCGCCGCA 62.193 66.667 0.00 0.00 41.37 5.69
558 581 2.653448 CGAGTCTCATCGCCGCAG 60.653 66.667 0.00 0.00 35.66 5.18
559 582 2.801421 GAGTCTCATCGCCGCAGA 59.199 61.111 0.00 0.00 0.00 4.26
560 583 1.139734 GAGTCTCATCGCCGCAGAA 59.860 57.895 0.00 0.00 0.00 3.02
561 584 0.458543 GAGTCTCATCGCCGCAGAAA 60.459 55.000 0.00 0.00 0.00 2.52
562 585 0.037326 AGTCTCATCGCCGCAGAAAA 60.037 50.000 0.00 0.00 0.00 2.29
563 586 0.796312 GTCTCATCGCCGCAGAAAAA 59.204 50.000 0.00 0.00 0.00 1.94
564 587 0.796312 TCTCATCGCCGCAGAAAAAC 59.204 50.000 0.00 0.00 0.00 2.43
565 588 0.519175 CTCATCGCCGCAGAAAAACG 60.519 55.000 0.00 0.00 0.00 3.60
566 589 0.946700 TCATCGCCGCAGAAAAACGA 60.947 50.000 0.00 0.00 37.15 3.85
567 590 0.789383 CATCGCCGCAGAAAAACGAC 60.789 55.000 0.00 0.00 35.33 4.34
568 591 1.225376 ATCGCCGCAGAAAAACGACA 61.225 50.000 0.00 0.00 35.33 4.35
569 592 1.721133 CGCCGCAGAAAAACGACAC 60.721 57.895 0.00 0.00 0.00 3.67
570 593 1.647084 GCCGCAGAAAAACGACACT 59.353 52.632 0.00 0.00 0.00 3.55
571 594 0.384353 GCCGCAGAAAAACGACACTC 60.384 55.000 0.00 0.00 0.00 3.51
572 595 0.234884 CCGCAGAAAAACGACACTCC 59.765 55.000 0.00 0.00 0.00 3.85
573 596 0.934496 CGCAGAAAAACGACACTCCA 59.066 50.000 0.00 0.00 0.00 3.86
574 597 1.329292 CGCAGAAAAACGACACTCCAA 59.671 47.619 0.00 0.00 0.00 3.53
575 598 2.599848 CGCAGAAAAACGACACTCCAAG 60.600 50.000 0.00 0.00 0.00 3.61
576 599 2.854805 GCAGAAAAACGACACTCCAAGC 60.855 50.000 0.00 0.00 0.00 4.01
577 600 1.597663 AGAAAAACGACACTCCAAGCG 59.402 47.619 0.00 0.00 0.00 4.68
578 601 0.028902 AAAAACGACACTCCAAGCGC 59.971 50.000 0.00 0.00 0.00 5.92
579 602 2.101209 AAAACGACACTCCAAGCGCG 62.101 55.000 0.00 0.00 0.00 6.86
580 603 3.785189 AACGACACTCCAAGCGCGT 62.785 57.895 8.43 0.00 0.00 6.01
581 604 3.767230 CGACACTCCAAGCGCGTG 61.767 66.667 16.87 16.87 34.92 5.34
582 605 3.414700 GACACTCCAAGCGCGTGG 61.415 66.667 33.13 33.13 40.33 4.94
583 606 3.858868 GACACTCCAAGCGCGTGGA 62.859 63.158 36.93 36.93 45.72 4.02
587 610 2.423874 TCCAAGCGCGTGGAAAGA 59.576 55.556 37.59 19.03 44.91 2.52
588 611 1.003839 TCCAAGCGCGTGGAAAGAT 60.004 52.632 37.59 0.00 44.91 2.40
589 612 1.019278 TCCAAGCGCGTGGAAAGATC 61.019 55.000 37.59 0.00 44.91 2.75
590 613 1.298157 CCAAGCGCGTGGAAAGATCA 61.298 55.000 35.10 0.00 41.65 2.92
591 614 0.729116 CAAGCGCGTGGAAAGATCAT 59.271 50.000 16.02 0.00 0.00 2.45
592 615 1.009829 AAGCGCGTGGAAAGATCATC 58.990 50.000 8.43 0.00 0.00 2.92
593 616 0.176680 AGCGCGTGGAAAGATCATCT 59.823 50.000 8.43 0.00 0.00 2.90
594 617 0.302890 GCGCGTGGAAAGATCATCTG 59.697 55.000 8.43 0.00 0.00 2.90
635 658 0.605319 CGCCAAGCCAGTCAACCTTA 60.605 55.000 0.00 0.00 0.00 2.69
636 659 0.881796 GCCAAGCCAGTCAACCTTAC 59.118 55.000 0.00 0.00 0.00 2.34
638 661 2.863809 CCAAGCCAGTCAACCTTACTT 58.136 47.619 0.00 0.00 0.00 2.24
639 662 3.222603 CCAAGCCAGTCAACCTTACTTT 58.777 45.455 0.00 0.00 0.00 2.66
641 664 3.577805 AGCCAGTCAACCTTACTTTGT 57.422 42.857 0.00 0.00 0.00 2.83
642 665 3.214328 AGCCAGTCAACCTTACTTTGTG 58.786 45.455 0.00 0.00 0.00 3.33
644 667 3.551846 CCAGTCAACCTTACTTTGTGGT 58.448 45.455 0.00 0.00 35.29 4.16
646 669 2.949644 AGTCAACCTTACTTTGTGGTGC 59.050 45.455 0.00 0.00 33.89 5.01
647 670 2.034179 GTCAACCTTACTTTGTGGTGCC 59.966 50.000 0.00 0.00 33.89 5.01
648 671 1.339929 CAACCTTACTTTGTGGTGCCC 59.660 52.381 0.00 0.00 33.89 5.36
649 672 0.178973 ACCTTACTTTGTGGTGCCCC 60.179 55.000 0.00 0.00 32.16 5.80
650 673 1.241315 CCTTACTTTGTGGTGCCCCG 61.241 60.000 0.00 0.00 0.00 5.73
651 674 1.862602 CTTACTTTGTGGTGCCCCGC 61.863 60.000 0.00 0.00 41.91 6.13
658 681 2.123683 TGGTGCCCCGCAAAGAAA 60.124 55.556 0.00 0.00 41.47 2.52
659 682 1.758514 TGGTGCCCCGCAAAGAAAA 60.759 52.632 0.00 0.00 41.47 2.29
660 683 1.330655 TGGTGCCCCGCAAAGAAAAA 61.331 50.000 0.00 0.00 41.47 1.94
680 703 5.477607 AAAAACCTTACTTTATGGTGCCC 57.522 39.130 0.00 0.00 36.45 5.36
681 704 2.820728 ACCTTACTTTATGGTGCCCC 57.179 50.000 0.00 0.00 35.17 5.80
682 705 1.064979 ACCTTACTTTATGGTGCCCCG 60.065 52.381 0.00 0.00 35.17 5.73
683 706 1.021968 CTTACTTTATGGTGCCCCGC 58.978 55.000 0.00 0.00 0.00 6.13
684 707 0.745128 TTACTTTATGGTGCCCCGCG 60.745 55.000 0.00 0.00 0.00 6.46
685 708 1.615165 TACTTTATGGTGCCCCGCGA 61.615 55.000 8.23 0.00 0.00 5.87
686 709 1.747367 CTTTATGGTGCCCCGCGAA 60.747 57.895 8.23 0.00 0.00 4.70
687 710 1.714899 CTTTATGGTGCCCCGCGAAG 61.715 60.000 8.23 0.00 0.00 3.79
688 711 2.186602 TTTATGGTGCCCCGCGAAGA 62.187 55.000 8.23 0.00 0.00 2.87
689 712 2.186602 TTATGGTGCCCCGCGAAGAA 62.187 55.000 8.23 0.00 0.00 2.52
690 713 2.186602 TATGGTGCCCCGCGAAGAAA 62.187 55.000 8.23 0.00 0.00 2.52
691 714 2.981350 GGTGCCCCGCGAAGAAAA 60.981 61.111 8.23 0.00 0.00 2.29
692 715 2.557372 GGTGCCCCGCGAAGAAAAA 61.557 57.895 8.23 0.00 0.00 1.94
714 737 7.706100 AAAAACCTTACTTTGTGGTGACTAA 57.294 32.000 0.00 0.00 33.89 2.24
715 738 7.891498 AAAACCTTACTTTGTGGTGACTAAT 57.109 32.000 0.00 0.00 33.89 1.73
716 739 8.983702 AAAACCTTACTTTGTGGTGACTAATA 57.016 30.769 0.00 0.00 33.89 0.98
717 740 8.617290 AAACCTTACTTTGTGGTGACTAATAG 57.383 34.615 0.00 0.00 33.89 1.73
718 741 7.549147 ACCTTACTTTGTGGTGACTAATAGA 57.451 36.000 0.00 0.00 32.16 1.98
719 742 8.147244 ACCTTACTTTGTGGTGACTAATAGAT 57.853 34.615 0.00 0.00 32.16 1.98
720 743 8.258708 ACCTTACTTTGTGGTGACTAATAGATC 58.741 37.037 0.00 0.00 32.16 2.75
721 744 7.711339 CCTTACTTTGTGGTGACTAATAGATCC 59.289 40.741 0.00 0.00 0.00 3.36
722 745 6.875972 ACTTTGTGGTGACTAATAGATCCT 57.124 37.500 0.00 0.00 0.00 3.24
723 746 6.644347 ACTTTGTGGTGACTAATAGATCCTG 58.356 40.000 0.00 0.00 0.00 3.86
724 747 6.440647 ACTTTGTGGTGACTAATAGATCCTGA 59.559 38.462 0.00 0.00 0.00 3.86
725 748 6.867519 TTGTGGTGACTAATAGATCCTGAA 57.132 37.500 0.00 0.00 0.00 3.02
726 749 6.867519 TGTGGTGACTAATAGATCCTGAAA 57.132 37.500 0.00 0.00 0.00 2.69
727 750 7.437713 TGTGGTGACTAATAGATCCTGAAAT 57.562 36.000 0.00 0.00 0.00 2.17
728 751 7.275183 TGTGGTGACTAATAGATCCTGAAATG 58.725 38.462 0.00 0.00 0.00 2.32
729 752 6.203723 GTGGTGACTAATAGATCCTGAAATGC 59.796 42.308 0.00 0.00 0.00 3.56
730 753 6.100279 TGGTGACTAATAGATCCTGAAATGCT 59.900 38.462 0.00 0.00 0.00 3.79
731 754 6.648725 GGTGACTAATAGATCCTGAAATGCTC 59.351 42.308 0.00 0.00 0.00 4.26
732 755 6.364706 GTGACTAATAGATCCTGAAATGCTCG 59.635 42.308 0.00 0.00 0.00 5.03
733 756 5.233988 ACTAATAGATCCTGAAATGCTCGC 58.766 41.667 0.00 0.00 0.00 5.03
734 757 2.140065 TAGATCCTGAAATGCTCGCG 57.860 50.000 0.00 0.00 0.00 5.87
735 758 0.176680 AGATCCTGAAATGCTCGCGT 59.823 50.000 5.77 0.00 0.00 6.01
736 759 1.409064 AGATCCTGAAATGCTCGCGTA 59.591 47.619 5.77 0.00 0.00 4.42
780 803 3.490439 TGGGGTGATGCACATATACAG 57.510 47.619 0.00 0.00 35.86 2.74
782 805 3.652387 TGGGGTGATGCACATATACAGAT 59.348 43.478 0.00 0.00 35.86 2.90
783 806 4.104579 TGGGGTGATGCACATATACAGATT 59.895 41.667 0.00 0.00 35.86 2.40
784 807 5.309282 TGGGGTGATGCACATATACAGATTA 59.691 40.000 0.00 0.00 35.86 1.75
791 814 6.731292 TGCACATATACAGATTACAGACCT 57.269 37.500 0.00 0.00 0.00 3.85
825 848 3.665544 GCTCTAGCAGCTTCTCCAG 57.334 57.895 0.00 0.00 45.83 3.86
846 869 3.992636 GCAGCTGCTCAGTTTCATC 57.007 52.632 31.33 0.00 38.21 2.92
958 1042 7.625606 GCAAATAGTTTACGAGCACCAAATAGT 60.626 37.037 0.00 0.00 0.00 2.12
960 1044 8.644318 AATAGTTTACGAGCACCAAATAGTAG 57.356 34.615 0.00 0.00 0.00 2.57
961 1045 4.868734 AGTTTACGAGCACCAAATAGTAGC 59.131 41.667 0.00 0.00 0.00 3.58
962 1046 4.459390 TTACGAGCACCAAATAGTAGCA 57.541 40.909 0.00 0.00 0.00 3.49
963 1047 3.328382 ACGAGCACCAAATAGTAGCAA 57.672 42.857 0.00 0.00 0.00 3.91
964 1048 3.262420 ACGAGCACCAAATAGTAGCAAG 58.738 45.455 0.00 0.00 0.00 4.01
965 1049 2.609459 CGAGCACCAAATAGTAGCAAGG 59.391 50.000 0.00 0.00 0.00 3.61
966 1050 3.678806 CGAGCACCAAATAGTAGCAAGGA 60.679 47.826 0.00 0.00 0.00 3.36
967 1051 4.261801 GAGCACCAAATAGTAGCAAGGAA 58.738 43.478 0.00 0.00 0.00 3.36
968 1052 4.265073 AGCACCAAATAGTAGCAAGGAAG 58.735 43.478 0.00 0.00 0.00 3.46
969 1053 4.019321 AGCACCAAATAGTAGCAAGGAAGA 60.019 41.667 0.00 0.00 0.00 2.87
970 1054 4.333926 GCACCAAATAGTAGCAAGGAAGAG 59.666 45.833 0.00 0.00 0.00 2.85
989 1073 4.651778 AGAGAGATCGATCGAAGAGGAAT 58.348 43.478 23.50 2.89 43.63 3.01
1021 1124 2.202932 CCGGCCAAGGAGATGACG 60.203 66.667 2.24 0.00 0.00 4.35
1022 1125 2.721167 CCGGCCAAGGAGATGACGA 61.721 63.158 2.24 0.00 0.00 4.20
1023 1126 1.443407 CGGCCAAGGAGATGACGAT 59.557 57.895 2.24 0.00 0.00 3.73
1359 1462 0.694771 GGATAGGCATCATGAGGGCA 59.305 55.000 31.66 19.46 40.30 5.36
1461 1564 0.253327 CTAGCGGGAAGGCCTTCTTT 59.747 55.000 37.72 24.37 39.45 2.52
1493 1596 0.393537 ATCGGTTACCTCGACCTCGT 60.394 55.000 0.00 0.00 39.55 4.18
1497 1600 0.243095 GTTACCTCGACCTCGTGCTT 59.757 55.000 0.00 0.00 40.80 3.91
1602 1848 0.955919 CCTGGGCTGAAAGGTTCGTC 60.956 60.000 0.00 0.00 0.00 4.20
1716 2124 2.365582 CCGGCTGCCAAGTAATTAGTT 58.634 47.619 20.29 0.00 0.00 2.24
1717 2125 2.752903 CCGGCTGCCAAGTAATTAGTTT 59.247 45.455 20.29 0.00 0.00 2.66
1718 2126 3.427503 CCGGCTGCCAAGTAATTAGTTTG 60.428 47.826 20.29 1.59 0.00 2.93
1719 2127 3.427503 CGGCTGCCAAGTAATTAGTTTGG 60.428 47.826 20.29 18.23 43.31 3.28
1722 2130 4.700213 GCTGCCAAGTAATTAGTTTGGAGA 59.300 41.667 22.20 12.07 43.15 3.71
1731 2329 7.820648 AGTAATTAGTTTGGAGATTTGCAGTG 58.179 34.615 0.00 0.00 0.00 3.66
1736 2334 1.896220 TGGAGATTTGCAGTGGTCAC 58.104 50.000 0.00 0.00 0.00 3.67
1737 2335 1.168714 GGAGATTTGCAGTGGTCACC 58.831 55.000 0.00 0.00 0.00 4.02
1764 2370 1.442769 ACATCAGCGTCATTGGTCAC 58.557 50.000 0.00 0.00 0.00 3.67
1766 2372 2.079158 CATCAGCGTCATTGGTCACTT 58.921 47.619 0.00 0.00 0.00 3.16
1767 2373 1.511850 TCAGCGTCATTGGTCACTTG 58.488 50.000 0.00 0.00 0.00 3.16
1768 2374 1.202639 TCAGCGTCATTGGTCACTTGT 60.203 47.619 0.00 0.00 0.00 3.16
1785 2391 8.674607 GGTCACTTGTTTACCTAAAGGATTATG 58.325 37.037 2.23 0.00 38.94 1.90
1814 2420 7.800155 TCATTGTTCTAAGTTGTGTGATTGA 57.200 32.000 0.00 0.00 0.00 2.57
1879 2807 8.768955 GTTGTGATTATGCTCCACTCTTATAAG 58.231 37.037 6.11 6.11 0.00 1.73
1896 2941 9.944663 CTCTTATAAGTGTGTTAAACTTGCAAA 57.055 29.630 12.19 0.00 38.32 3.68
1948 2994 4.516359 CAAACATGTTGACAATTTTGCCG 58.484 39.130 12.82 0.00 30.29 5.69
1952 2998 2.815478 TGTTGACAATTTTGCCGTTCC 58.185 42.857 0.00 0.00 0.00 3.62
1971 3017 1.226717 GGATCCTCACGTCGACAGC 60.227 63.158 17.16 0.00 0.00 4.40
1975 3021 4.700365 CTCACGTCGACAGCGCCA 62.700 66.667 17.16 0.00 37.46 5.69
1987 3033 2.960129 GCGCCACCTCCGTAATCG 60.960 66.667 0.00 0.00 0.00 3.34
2016 3062 2.760385 GGTCGTGGAGAGAGGGGG 60.760 72.222 0.00 0.00 0.00 5.40
2017 3063 2.037527 GTCGTGGAGAGAGGGGGT 59.962 66.667 0.00 0.00 0.00 4.95
2018 3064 2.037367 TCGTGGAGAGAGGGGGTG 59.963 66.667 0.00 0.00 0.00 4.61
2019 3065 2.283966 CGTGGAGAGAGGGGGTGT 60.284 66.667 0.00 0.00 0.00 4.16
2020 3066 1.913762 CGTGGAGAGAGGGGGTGTT 60.914 63.158 0.00 0.00 0.00 3.32
2021 3067 1.481056 CGTGGAGAGAGGGGGTGTTT 61.481 60.000 0.00 0.00 0.00 2.83
2022 3068 0.771755 GTGGAGAGAGGGGGTGTTTT 59.228 55.000 0.00 0.00 0.00 2.43
2023 3069 1.145119 GTGGAGAGAGGGGGTGTTTTT 59.855 52.381 0.00 0.00 0.00 1.94
2091 3137 0.178975 AGATGTTTTGTCCCCGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
2092 3138 0.676736 GATGTTTTGTCCCCGGCAAA 59.323 50.000 0.00 0.00 34.47 3.68
2111 3157 2.820845 AAAAACACAGGGCTGGGAC 58.179 52.632 0.00 0.00 37.45 4.46
2125 3171 0.630673 TGGGACAGAATTGGATGGGG 59.369 55.000 0.00 0.00 0.00 4.96
2152 3202 7.611213 TTTTGCGGGAAAAACTTTCAATTTA 57.389 28.000 4.86 0.00 30.25 1.40
2193 3243 9.732130 AGAGAGTAAAAAGAACATAAGAAGCAT 57.268 29.630 0.00 0.00 0.00 3.79
2225 3275 7.724490 TTACATCCATCTCCGATCTATTCAT 57.276 36.000 0.00 0.00 0.00 2.57
2249 3299 7.376435 TGATGTAACCGAATGCATTATATGG 57.624 36.000 12.97 13.96 0.00 2.74
2255 3305 3.376234 CCGAATGCATTATATGGAGCAGG 59.624 47.826 12.97 0.28 40.71 4.85
2258 3308 3.144657 TGCATTATATGGAGCAGGTGG 57.855 47.619 0.00 0.00 32.48 4.61
2296 3483 4.128388 CAATCCCCGCCAAACCGC 62.128 66.667 0.00 0.00 0.00 5.68
2312 3499 2.282180 GCGGGGCTTGAACCTCAA 60.282 61.111 0.00 0.00 34.79 3.02
2313 3500 1.678970 GCGGGGCTTGAACCTCAAT 60.679 57.895 0.00 0.00 35.59 2.57
2335 3522 1.739667 GGCAAACGAACAAGGCCTT 59.260 52.632 13.78 13.78 41.39 4.35
2487 3815 2.943680 TAGAGCATCGACAGCAGCGC 62.944 60.000 13.43 0.00 42.67 5.92
2520 3848 0.665369 CGGACACTAACCGGTCACAC 60.665 60.000 8.04 0.00 45.65 3.82
2549 3877 3.726557 ATGCAATCCACATCCGGATAT 57.273 42.857 18.63 1.59 45.39 1.63
2552 3880 3.265791 GCAATCCACATCCGGATATCTC 58.734 50.000 18.63 0.00 45.39 2.75
2553 3881 3.306989 GCAATCCACATCCGGATATCTCA 60.307 47.826 18.63 0.34 45.39 3.27
2555 3883 5.494724 CAATCCACATCCGGATATCTCAAT 58.505 41.667 18.63 3.60 45.39 2.57
2562 3890 7.332926 CCACATCCGGATATCTCAATTTAGAAG 59.667 40.741 18.63 0.89 0.00 2.85
2606 3934 2.096713 GCAACATAGCGATCTTTAGGCG 60.097 50.000 0.00 0.00 0.00 5.52
2633 3961 4.697756 CGGTCACCGTGGCCATGT 62.698 66.667 23.39 14.28 43.88 3.21
2636 3964 4.386951 TCACCGTGGCCATGTCCG 62.387 66.667 23.39 15.01 0.00 4.79
2673 4001 3.961729 GGAGTTTTGGTCCGGTCG 58.038 61.111 0.00 0.00 0.00 4.79
2676 4004 2.592287 GTTTTGGTCCGGTCGCCA 60.592 61.111 0.00 6.18 0.00 5.69
2689 4017 0.737715 GTCGCCAGCAAGGTAGAGTG 60.738 60.000 0.00 0.00 40.61 3.51
2692 4020 1.842381 GCCAGCAAGGTAGAGTGGGT 61.842 60.000 0.00 0.00 40.61 4.51
2693 4021 0.036010 CCAGCAAGGTAGAGTGGGTG 60.036 60.000 0.00 0.00 0.00 4.61
2694 4022 0.976641 CAGCAAGGTAGAGTGGGTGA 59.023 55.000 0.00 0.00 0.00 4.02
2695 4023 1.347707 CAGCAAGGTAGAGTGGGTGAA 59.652 52.381 0.00 0.00 0.00 3.18
2696 4024 2.054799 AGCAAGGTAGAGTGGGTGAAA 58.945 47.619 0.00 0.00 0.00 2.69
2697 4025 2.039084 AGCAAGGTAGAGTGGGTGAAAG 59.961 50.000 0.00 0.00 0.00 2.62
2698 4026 2.876079 GCAAGGTAGAGTGGGTGAAAGG 60.876 54.545 0.00 0.00 0.00 3.11
2699 4027 2.637872 CAAGGTAGAGTGGGTGAAAGGA 59.362 50.000 0.00 0.00 0.00 3.36
2700 4028 3.207044 AGGTAGAGTGGGTGAAAGGAT 57.793 47.619 0.00 0.00 0.00 3.24
2701 4029 3.108376 AGGTAGAGTGGGTGAAAGGATC 58.892 50.000 0.00 0.00 0.00 3.36
2702 4030 2.159085 GGTAGAGTGGGTGAAAGGATCG 60.159 54.545 0.00 0.00 0.00 3.69
2703 4031 1.938585 AGAGTGGGTGAAAGGATCGA 58.061 50.000 0.00 0.00 0.00 3.59
2704 4032 1.827969 AGAGTGGGTGAAAGGATCGAG 59.172 52.381 0.00 0.00 0.00 4.04
2705 4033 1.825474 GAGTGGGTGAAAGGATCGAGA 59.175 52.381 0.00 0.00 0.00 4.04
2706 4034 2.432510 GAGTGGGTGAAAGGATCGAGAT 59.567 50.000 0.00 0.00 0.00 2.75
2707 4035 2.169352 AGTGGGTGAAAGGATCGAGATG 59.831 50.000 0.00 0.00 0.00 2.90
2708 4036 1.486310 TGGGTGAAAGGATCGAGATGG 59.514 52.381 0.00 0.00 0.00 3.51
2709 4037 1.762957 GGGTGAAAGGATCGAGATGGA 59.237 52.381 0.00 0.00 0.00 3.41
2710 4038 2.483889 GGGTGAAAGGATCGAGATGGAC 60.484 54.545 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.177600 CCGATGTTGCAAGGTCGG 58.822 61.111 27.84 27.84 46.26 4.79
6 7 1.647545 ATGCCGATGTTGCAAGGTCG 61.648 55.000 20.63 20.63 42.92 4.79
7 8 0.179156 CATGCCGATGTTGCAAGGTC 60.179 55.000 0.00 0.00 42.92 3.85
8 9 0.895100 ACATGCCGATGTTGCAAGGT 60.895 50.000 0.00 0.00 40.05 3.50
9 10 1.885157 ACATGCCGATGTTGCAAGG 59.115 52.632 0.00 0.00 40.05 3.61
16 17 0.968405 AAAAGCCAACATGCCGATGT 59.032 45.000 0.00 0.00 45.24 3.06
17 18 1.067706 TGAAAAGCCAACATGCCGATG 60.068 47.619 0.00 0.00 35.49 3.84
18 19 1.203052 CTGAAAAGCCAACATGCCGAT 59.797 47.619 0.00 0.00 0.00 4.18
19 20 0.597568 CTGAAAAGCCAACATGCCGA 59.402 50.000 0.00 0.00 0.00 5.54
20 21 1.010419 GCTGAAAAGCCAACATGCCG 61.010 55.000 0.00 0.00 0.00 5.69
21 22 1.010419 CGCTGAAAAGCCAACATGCC 61.010 55.000 0.00 0.00 0.00 4.40
22 23 0.318955 ACGCTGAAAAGCCAACATGC 60.319 50.000 0.00 0.00 0.00 4.06
23 24 2.138596 AACGCTGAAAAGCCAACATG 57.861 45.000 0.00 0.00 0.00 3.21
24 25 2.030274 GGTAACGCTGAAAAGCCAACAT 60.030 45.455 0.00 0.00 0.00 2.71
25 26 1.335496 GGTAACGCTGAAAAGCCAACA 59.665 47.619 0.00 0.00 0.00 3.33
26 27 1.335597 GGGTAACGCTGAAAAGCCAAC 60.336 52.381 0.00 0.00 37.60 3.77
27 28 0.955905 GGGTAACGCTGAAAAGCCAA 59.044 50.000 0.00 0.00 37.60 4.52
28 29 0.109723 AGGGTAACGCTGAAAAGCCA 59.890 50.000 0.00 0.00 37.60 4.75
29 30 1.244816 AAGGGTAACGCTGAAAAGCC 58.755 50.000 0.00 0.00 37.60 4.35
30 31 2.664698 CGAAAGGGTAACGCTGAAAAGC 60.665 50.000 0.00 0.00 37.60 3.51
31 32 3.183237 CGAAAGGGTAACGCTGAAAAG 57.817 47.619 0.00 0.00 37.60 2.27
45 46 2.253414 GCTACCGCAAAGCCGAAAGG 62.253 60.000 0.00 0.00 45.78 3.11
46 47 1.134694 GCTACCGCAAAGCCGAAAG 59.865 57.895 0.00 0.00 33.73 2.62
47 48 2.673114 CGCTACCGCAAAGCCGAAA 61.673 57.895 0.00 0.00 36.60 3.46
48 49 3.115892 CGCTACCGCAAAGCCGAA 61.116 61.111 0.00 0.00 36.60 4.30
52 53 3.262142 TTTGCCGCTACCGCAAAGC 62.262 57.895 3.97 0.00 36.39 3.51
53 54 1.442017 GTTTGCCGCTACCGCAAAG 60.442 57.895 8.13 0.00 39.35 2.77
54 55 2.187493 TGTTTGCCGCTACCGCAAA 61.187 52.632 3.97 3.97 37.77 3.68
55 56 2.592001 TGTTTGCCGCTACCGCAA 60.592 55.556 0.00 0.00 35.30 4.85
56 57 3.350612 GTGTTTGCCGCTACCGCA 61.351 61.111 0.00 0.00 35.30 5.69
57 58 4.097863 GGTGTTTGCCGCTACCGC 62.098 66.667 0.00 0.00 0.00 5.68
67 68 0.249405 ATGTTGCAAGGCGGTGTTTG 60.249 50.000 0.00 0.00 0.00 2.93
68 69 0.463620 AATGTTGCAAGGCGGTGTTT 59.536 45.000 0.00 0.00 0.00 2.83
69 70 0.031994 GAATGTTGCAAGGCGGTGTT 59.968 50.000 0.00 0.00 0.00 3.32
70 71 1.106351 TGAATGTTGCAAGGCGGTGT 61.106 50.000 0.00 0.00 0.00 4.16
71 72 0.664166 GTGAATGTTGCAAGGCGGTG 60.664 55.000 0.00 0.00 0.00 4.94
72 73 1.106351 TGTGAATGTTGCAAGGCGGT 61.106 50.000 0.00 0.00 0.00 5.68
73 74 0.244450 ATGTGAATGTTGCAAGGCGG 59.756 50.000 0.00 0.00 0.00 6.13
74 75 1.200716 AGATGTGAATGTTGCAAGGCG 59.799 47.619 0.00 0.00 0.00 5.52
75 76 2.730090 CGAGATGTGAATGTTGCAAGGC 60.730 50.000 0.00 0.00 0.00 4.35
76 77 2.159476 CCGAGATGTGAATGTTGCAAGG 60.159 50.000 0.00 0.00 0.00 3.61
77 78 2.730090 GCCGAGATGTGAATGTTGCAAG 60.730 50.000 0.00 0.00 0.00 4.01
78 79 1.199789 GCCGAGATGTGAATGTTGCAA 59.800 47.619 0.00 0.00 0.00 4.08
79 80 0.804364 GCCGAGATGTGAATGTTGCA 59.196 50.000 0.00 0.00 0.00 4.08
80 81 0.099436 GGCCGAGATGTGAATGTTGC 59.901 55.000 0.00 0.00 0.00 4.17
81 82 1.399440 CTGGCCGAGATGTGAATGTTG 59.601 52.381 0.00 0.00 0.00 3.33
82 83 1.003580 ACTGGCCGAGATGTGAATGTT 59.996 47.619 8.91 0.00 0.00 2.71
83 84 0.615331 ACTGGCCGAGATGTGAATGT 59.385 50.000 8.91 0.00 0.00 2.71
84 85 2.205074 GTACTGGCCGAGATGTGAATG 58.795 52.381 8.91 0.00 0.00 2.67
85 86 1.139058 GGTACTGGCCGAGATGTGAAT 59.861 52.381 8.91 0.00 0.00 2.57
86 87 0.535335 GGTACTGGCCGAGATGTGAA 59.465 55.000 8.91 0.00 0.00 3.18
87 88 0.613572 TGGTACTGGCCGAGATGTGA 60.614 55.000 8.91 0.00 0.00 3.58
88 89 0.465705 ATGGTACTGGCCGAGATGTG 59.534 55.000 8.91 0.00 0.00 3.21
89 90 0.753262 GATGGTACTGGCCGAGATGT 59.247 55.000 8.91 0.60 0.00 3.06
90 91 0.319040 CGATGGTACTGGCCGAGATG 60.319 60.000 8.91 0.00 0.00 2.90
91 92 0.755698 ACGATGGTACTGGCCGAGAT 60.756 55.000 8.91 0.00 0.00 2.75
92 93 1.379443 ACGATGGTACTGGCCGAGA 60.379 57.895 8.91 0.00 0.00 4.04
93 94 1.065928 GACGATGGTACTGGCCGAG 59.934 63.158 0.00 0.00 0.00 4.63
94 95 1.679641 TGACGATGGTACTGGCCGA 60.680 57.895 0.00 0.00 0.00 5.54
95 96 1.518572 GTGACGATGGTACTGGCCG 60.519 63.158 0.00 0.00 0.00 6.13
96 97 1.153429 GGTGACGATGGTACTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
97 98 1.153429 GGGTGACGATGGTACTGGC 60.153 63.158 0.00 0.00 0.00 4.85
122 123 1.588139 GCCAGAATCGCAATGCTGC 60.588 57.895 2.94 0.00 45.75 5.25
123 124 0.454600 AAGCCAGAATCGCAATGCTG 59.545 50.000 2.94 0.00 38.19 4.41
124 125 0.454600 CAAGCCAGAATCGCAATGCT 59.545 50.000 2.94 0.00 0.00 3.79
125 126 0.452987 TCAAGCCAGAATCGCAATGC 59.547 50.000 0.00 0.00 0.00 3.56
126 127 2.479049 CCTTCAAGCCAGAATCGCAATG 60.479 50.000 0.00 0.00 0.00 2.82
127 128 1.747355 CCTTCAAGCCAGAATCGCAAT 59.253 47.619 0.00 0.00 0.00 3.56
128 129 1.167851 CCTTCAAGCCAGAATCGCAA 58.832 50.000 0.00 0.00 0.00 4.85
129 130 0.324614 TCCTTCAAGCCAGAATCGCA 59.675 50.000 0.00 0.00 0.00 5.10
130 131 1.012841 CTCCTTCAAGCCAGAATCGC 58.987 55.000 0.00 0.00 0.00 4.58
131 132 1.012841 GCTCCTTCAAGCCAGAATCG 58.987 55.000 0.00 0.00 36.22 3.34
132 133 2.119801 TGCTCCTTCAAGCCAGAATC 57.880 50.000 0.00 0.00 41.77 2.52
133 134 2.444421 CTTGCTCCTTCAAGCCAGAAT 58.556 47.619 0.00 0.00 41.77 2.40
134 135 1.546323 CCTTGCTCCTTCAAGCCAGAA 60.546 52.381 0.00 0.00 41.47 3.02
135 136 0.037303 CCTTGCTCCTTCAAGCCAGA 59.963 55.000 0.00 0.00 41.47 3.86
136 137 0.251077 ACCTTGCTCCTTCAAGCCAG 60.251 55.000 0.00 0.00 41.47 4.85
137 138 0.185901 AACCTTGCTCCTTCAAGCCA 59.814 50.000 0.00 0.00 41.47 4.75
138 139 1.332195 AAACCTTGCTCCTTCAAGCC 58.668 50.000 0.00 0.00 41.47 4.35
139 140 2.546584 CCAAAACCTTGCTCCTTCAAGC 60.547 50.000 0.00 0.00 41.47 4.01
140 141 2.695147 ACCAAAACCTTGCTCCTTCAAG 59.305 45.455 0.00 0.00 42.23 3.02
141 142 2.745968 ACCAAAACCTTGCTCCTTCAA 58.254 42.857 0.00 0.00 0.00 2.69
142 143 2.452600 ACCAAAACCTTGCTCCTTCA 57.547 45.000 0.00 0.00 0.00 3.02
143 144 3.005472 GGTAACCAAAACCTTGCTCCTTC 59.995 47.826 0.00 0.00 33.97 3.46
144 145 2.963101 GGTAACCAAAACCTTGCTCCTT 59.037 45.455 0.00 0.00 33.97 3.36
145 146 2.594131 GGTAACCAAAACCTTGCTCCT 58.406 47.619 0.00 0.00 33.97 3.69
146 147 1.268625 CGGTAACCAAAACCTTGCTCC 59.731 52.381 0.00 0.00 34.66 4.70
147 148 1.268625 CCGGTAACCAAAACCTTGCTC 59.731 52.381 0.00 0.00 34.66 4.26
148 149 1.324383 CCGGTAACCAAAACCTTGCT 58.676 50.000 0.00 0.00 34.66 3.91
149 150 1.001048 GACCGGTAACCAAAACCTTGC 60.001 52.381 7.34 0.00 34.66 4.01
170 171 7.882791 GGTAACCATGGGAAATCTCAAAATTTT 59.117 33.333 18.09 0.00 0.00 1.82
178 179 2.943033 CGTGGTAACCATGGGAAATCTC 59.057 50.000 18.09 1.33 36.92 2.75
215 216 0.031721 GCTCGGTATGGGGACTTACG 59.968 60.000 0.00 0.00 40.79 3.18
220 222 1.828979 TTTTTGCTCGGTATGGGGAC 58.171 50.000 0.00 0.00 0.00 4.46
262 273 8.502387 CCTACGTACTTTACTATAAATCGAGCT 58.498 37.037 0.00 0.00 0.00 4.09
263 274 8.499162 TCCTACGTACTTTACTATAAATCGAGC 58.501 37.037 0.00 0.00 0.00 5.03
284 295 7.173562 ACTCTCGTGACATTATGTAGATCCTAC 59.826 40.741 0.00 0.00 0.00 3.18
294 305 5.062683 CAGAACCAACTCTCGTGACATTATG 59.937 44.000 0.00 0.00 0.00 1.90
295 306 5.047306 TCAGAACCAACTCTCGTGACATTAT 60.047 40.000 0.00 0.00 0.00 1.28
300 311 2.395654 GTCAGAACCAACTCTCGTGAC 58.604 52.381 0.00 0.00 0.00 3.67
332 355 5.373981 TCGAACTAGAGACCTCTCAAAAC 57.626 43.478 2.36 0.00 45.21 2.43
417 440 6.292488 GATAAACATGGTTATCACGGTTACCG 60.292 42.308 30.24 23.18 40.20 4.02
422 445 5.741011 ACTGATAAACATGGTTATCACGGT 58.259 37.500 32.81 27.58 42.72 4.83
423 446 6.238374 GGAACTGATAAACATGGTTATCACGG 60.238 42.308 32.81 27.06 42.72 4.94
424 447 6.238374 GGGAACTGATAAACATGGTTATCACG 60.238 42.308 32.81 28.54 42.72 4.35
425 448 6.039382 GGGGAACTGATAAACATGGTTATCAC 59.961 42.308 32.81 24.91 42.72 3.06
427 450 6.365520 AGGGGAACTGATAAACATGGTTATC 58.634 40.000 29.09 29.09 39.80 1.75
428 451 6.069088 TGAGGGGAACTGATAAACATGGTTAT 60.069 38.462 15.93 15.93 0.00 1.89
429 452 5.251932 TGAGGGGAACTGATAAACATGGTTA 59.748 40.000 5.50 5.50 0.00 2.85
430 453 4.044065 TGAGGGGAACTGATAAACATGGTT 59.956 41.667 0.00 0.00 0.00 3.67
431 454 3.591527 TGAGGGGAACTGATAAACATGGT 59.408 43.478 0.00 0.00 0.00 3.55
432 455 4.202441 CTGAGGGGAACTGATAAACATGG 58.798 47.826 0.00 0.00 0.00 3.66
433 456 4.848357 ACTGAGGGGAACTGATAAACATG 58.152 43.478 0.00 0.00 0.00 3.21
434 457 6.636454 TTACTGAGGGGAACTGATAAACAT 57.364 37.500 0.00 0.00 0.00 2.71
435 458 6.442541 TTTACTGAGGGGAACTGATAAACA 57.557 37.500 0.00 0.00 0.00 2.83
436 459 7.939784 ATTTTACTGAGGGGAACTGATAAAC 57.060 36.000 0.00 0.00 0.00 2.01
437 460 8.950007 AAATTTTACTGAGGGGAACTGATAAA 57.050 30.769 0.00 0.00 0.00 1.40
438 461 7.614192 GGAAATTTTACTGAGGGGAACTGATAA 59.386 37.037 0.00 0.00 0.00 1.75
439 462 7.036863 AGGAAATTTTACTGAGGGGAACTGATA 60.037 37.037 0.00 0.00 0.00 2.15
440 463 5.952347 GGAAATTTTACTGAGGGGAACTGAT 59.048 40.000 0.00 0.00 0.00 2.90
441 464 5.074515 AGGAAATTTTACTGAGGGGAACTGA 59.925 40.000 0.00 0.00 0.00 3.41
442 465 5.325239 AGGAAATTTTACTGAGGGGAACTG 58.675 41.667 0.00 0.00 0.00 3.16
443 466 5.074515 TGAGGAAATTTTACTGAGGGGAACT 59.925 40.000 0.00 0.00 0.00 3.01
444 467 5.321927 TGAGGAAATTTTACTGAGGGGAAC 58.678 41.667 0.00 0.00 0.00 3.62
445 468 5.592587 TGAGGAAATTTTACTGAGGGGAA 57.407 39.130 0.00 0.00 0.00 3.97
446 469 5.796502 ATGAGGAAATTTTACTGAGGGGA 57.203 39.130 0.00 0.00 0.00 4.81
447 470 5.127682 CCAATGAGGAAATTTTACTGAGGGG 59.872 44.000 0.00 0.00 41.22 4.79
448 471 5.127682 CCCAATGAGGAAATTTTACTGAGGG 59.872 44.000 0.00 1.21 41.22 4.30
449 472 5.716703 ACCCAATGAGGAAATTTTACTGAGG 59.283 40.000 0.00 0.00 41.22 3.86
450 473 6.840780 ACCCAATGAGGAAATTTTACTGAG 57.159 37.500 0.00 0.00 41.22 3.35
451 474 7.177744 GGTTACCCAATGAGGAAATTTTACTGA 59.822 37.037 0.00 0.00 41.22 3.41
452 475 7.039363 TGGTTACCCAATGAGGAAATTTTACTG 60.039 37.037 0.00 0.00 41.22 2.74
453 476 7.013834 TGGTTACCCAATGAGGAAATTTTACT 58.986 34.615 0.00 0.00 41.22 2.24
454 477 7.234661 TGGTTACCCAATGAGGAAATTTTAC 57.765 36.000 0.00 0.00 41.22 2.01
455 478 7.857404 TTGGTTACCCAATGAGGAAATTTTA 57.143 32.000 0.00 0.00 45.93 1.52
456 479 6.755542 TTGGTTACCCAATGAGGAAATTTT 57.244 33.333 0.00 0.00 45.93 1.82
469 492 1.343075 TGGCAAGGTTTTGGTTACCCA 60.343 47.619 0.00 0.00 39.65 4.51
470 493 1.415200 TGGCAAGGTTTTGGTTACCC 58.585 50.000 0.00 0.00 36.27 3.69
471 494 2.224185 CCTTGGCAAGGTTTTGGTTACC 60.224 50.000 33.43 0.00 43.95 2.85
472 495 3.106242 CCTTGGCAAGGTTTTGGTTAC 57.894 47.619 33.43 0.00 43.95 2.50
483 506 2.678190 GCTACCACTACTCCTTGGCAAG 60.678 54.545 20.31 20.31 36.20 4.01
484 507 1.278127 GCTACCACTACTCCTTGGCAA 59.722 52.381 0.00 0.00 36.20 4.52
485 508 0.902531 GCTACCACTACTCCTTGGCA 59.097 55.000 0.00 0.00 36.20 4.92
486 509 0.902531 TGCTACCACTACTCCTTGGC 59.097 55.000 0.00 0.00 36.20 4.52
487 510 1.134670 GCTGCTACCACTACTCCTTGG 60.135 57.143 0.00 0.00 39.00 3.61
488 511 1.550524 TGCTGCTACCACTACTCCTTG 59.449 52.381 0.00 0.00 0.00 3.61
489 512 1.827969 CTGCTGCTACCACTACTCCTT 59.172 52.381 0.00 0.00 0.00 3.36
490 513 1.479709 CTGCTGCTACCACTACTCCT 58.520 55.000 0.00 0.00 0.00 3.69
491 514 0.179097 GCTGCTGCTACCACTACTCC 60.179 60.000 8.53 0.00 36.03 3.85
492 515 0.532573 TGCTGCTGCTACCACTACTC 59.467 55.000 17.00 0.00 40.48 2.59
493 516 0.976641 TTGCTGCTGCTACCACTACT 59.023 50.000 17.00 0.00 40.48 2.57
494 517 1.667724 CATTGCTGCTGCTACCACTAC 59.332 52.381 17.00 0.00 40.48 2.73
495 518 2.013563 GCATTGCTGCTGCTACCACTA 61.014 52.381 17.00 0.00 45.32 2.74
496 519 1.310933 GCATTGCTGCTGCTACCACT 61.311 55.000 17.00 0.00 45.32 4.00
497 520 1.138247 GCATTGCTGCTGCTACCAC 59.862 57.895 17.00 0.00 45.32 4.16
498 521 2.400962 CGCATTGCTGCTGCTACCA 61.401 57.895 17.00 0.00 46.65 3.25
499 522 2.406401 CGCATTGCTGCTGCTACC 59.594 61.111 17.00 3.67 46.65 3.18
500 523 2.277756 GCGCATTGCTGCTGCTAC 60.278 61.111 17.00 2.82 46.65 3.58
516 539 2.093537 CTCATCCGGGGAGCAGTAGC 62.094 65.000 0.00 0.00 42.56 3.58
517 540 0.757188 ACTCATCCGGGGAGCAGTAG 60.757 60.000 19.86 2.84 35.79 2.57
518 541 1.043116 CACTCATCCGGGGAGCAGTA 61.043 60.000 19.86 0.00 35.79 2.74
519 542 2.039624 ACTCATCCGGGGAGCAGT 59.960 61.111 19.86 5.52 35.79 4.40
520 543 2.503061 CACTCATCCGGGGAGCAG 59.497 66.667 19.86 11.54 35.79 4.24
521 544 3.083349 CCACTCATCCGGGGAGCA 61.083 66.667 19.86 0.00 35.79 4.26
522 545 2.764128 TCCACTCATCCGGGGAGC 60.764 66.667 19.86 0.00 35.79 4.70
523 546 2.435693 GGTCCACTCATCCGGGGAG 61.436 68.421 18.75 18.75 38.36 4.30
524 547 2.365105 GGTCCACTCATCCGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
525 548 3.849951 CGGTCCACTCATCCGGGG 61.850 72.222 0.00 0.00 40.49 5.73
526 549 2.758327 TCGGTCCACTCATCCGGG 60.758 66.667 0.00 0.00 43.75 5.73
527 550 2.005960 GACTCGGTCCACTCATCCGG 62.006 65.000 0.00 0.00 43.75 5.14
528 551 1.032657 AGACTCGGTCCACTCATCCG 61.033 60.000 0.00 0.00 44.76 4.18
529 552 0.741915 GAGACTCGGTCCACTCATCC 59.258 60.000 0.00 0.00 32.18 3.51
530 553 1.464734 TGAGACTCGGTCCACTCATC 58.535 55.000 0.00 0.00 35.01 2.92
531 554 2.151502 ATGAGACTCGGTCCACTCAT 57.848 50.000 0.00 0.00 42.70 2.90
532 555 1.464734 GATGAGACTCGGTCCACTCA 58.535 55.000 0.00 0.00 42.26 3.41
533 556 0.378962 CGATGAGACTCGGTCCACTC 59.621 60.000 0.00 0.00 35.03 3.51
534 557 1.658686 GCGATGAGACTCGGTCCACT 61.659 60.000 0.00 0.00 39.05 4.00
535 558 1.226717 GCGATGAGACTCGGTCCAC 60.227 63.158 0.00 0.00 39.05 4.02
536 559 2.415608 GGCGATGAGACTCGGTCCA 61.416 63.158 0.00 0.73 39.05 4.02
537 560 2.413765 GGCGATGAGACTCGGTCC 59.586 66.667 0.00 0.00 39.05 4.46
538 561 2.024871 CGGCGATGAGACTCGGTC 59.975 66.667 0.00 0.00 39.05 4.79
539 562 4.194720 GCGGCGATGAGACTCGGT 62.195 66.667 12.98 0.00 39.05 4.69
540 563 4.193334 TGCGGCGATGAGACTCGG 62.193 66.667 12.98 0.00 39.05 4.63
541 564 2.598619 TTCTGCGGCGATGAGACTCG 62.599 60.000 12.98 0.00 41.54 4.18
542 565 0.458543 TTTCTGCGGCGATGAGACTC 60.459 55.000 12.98 0.00 0.00 3.36
543 566 0.037326 TTTTCTGCGGCGATGAGACT 60.037 50.000 12.98 0.00 0.00 3.24
544 567 0.796312 TTTTTCTGCGGCGATGAGAC 59.204 50.000 12.98 0.00 0.00 3.36
545 568 0.796312 GTTTTTCTGCGGCGATGAGA 59.204 50.000 12.98 5.21 0.00 3.27
546 569 0.519175 CGTTTTTCTGCGGCGATGAG 60.519 55.000 12.98 2.38 0.00 2.90
547 570 0.946700 TCGTTTTTCTGCGGCGATGA 60.947 50.000 12.98 4.31 0.00 2.92
548 571 0.789383 GTCGTTTTTCTGCGGCGATG 60.789 55.000 12.98 1.33 34.10 3.84
549 572 1.225376 TGTCGTTTTTCTGCGGCGAT 61.225 50.000 12.98 0.00 35.25 4.58
550 573 1.883544 TGTCGTTTTTCTGCGGCGA 60.884 52.632 12.98 0.00 35.25 5.54
551 574 1.721133 GTGTCGTTTTTCTGCGGCG 60.721 57.895 0.51 0.51 35.25 6.46
552 575 0.384353 GAGTGTCGTTTTTCTGCGGC 60.384 55.000 0.00 0.00 0.00 6.53
553 576 0.234884 GGAGTGTCGTTTTTCTGCGG 59.765 55.000 0.00 0.00 0.00 5.69
554 577 0.934496 TGGAGTGTCGTTTTTCTGCG 59.066 50.000 0.00 0.00 0.00 5.18
555 578 2.854805 GCTTGGAGTGTCGTTTTTCTGC 60.855 50.000 0.00 0.00 0.00 4.26
556 579 2.599848 CGCTTGGAGTGTCGTTTTTCTG 60.600 50.000 0.00 0.00 0.00 3.02
557 580 1.597663 CGCTTGGAGTGTCGTTTTTCT 59.402 47.619 0.00 0.00 0.00 2.52
558 581 1.920272 GCGCTTGGAGTGTCGTTTTTC 60.920 52.381 0.00 0.00 0.00 2.29
559 582 0.028902 GCGCTTGGAGTGTCGTTTTT 59.971 50.000 0.00 0.00 0.00 1.94
560 583 1.647084 GCGCTTGGAGTGTCGTTTT 59.353 52.632 0.00 0.00 0.00 2.43
561 584 2.594962 CGCGCTTGGAGTGTCGTTT 61.595 57.895 5.56 0.00 0.00 3.60
562 585 3.036084 CGCGCTTGGAGTGTCGTT 61.036 61.111 5.56 0.00 0.00 3.85
563 586 4.280494 ACGCGCTTGGAGTGTCGT 62.280 61.111 5.73 5.58 35.11 4.34
564 587 3.767230 CACGCGCTTGGAGTGTCG 61.767 66.667 5.73 0.00 41.01 4.35
565 588 3.414700 CCACGCGCTTGGAGTGTC 61.415 66.667 27.74 0.00 43.98 3.67
566 589 2.933878 TTTCCACGCGCTTGGAGTGT 62.934 55.000 31.15 5.85 46.61 3.55
567 590 2.175184 CTTTCCACGCGCTTGGAGTG 62.175 60.000 31.15 23.81 46.61 3.51
568 591 1.961277 CTTTCCACGCGCTTGGAGT 60.961 57.895 31.15 7.42 46.61 3.85
569 592 1.021390 ATCTTTCCACGCGCTTGGAG 61.021 55.000 31.15 22.36 46.61 3.86
570 593 1.003839 ATCTTTCCACGCGCTTGGA 60.004 52.632 29.88 29.88 44.39 3.53
571 594 1.298157 TGATCTTTCCACGCGCTTGG 61.298 55.000 26.04 26.04 38.10 3.61
572 595 0.729116 ATGATCTTTCCACGCGCTTG 59.271 50.000 5.73 6.96 0.00 4.01
573 596 1.009829 GATGATCTTTCCACGCGCTT 58.990 50.000 5.73 0.00 0.00 4.68
574 597 0.176680 AGATGATCTTTCCACGCGCT 59.823 50.000 5.73 0.00 0.00 5.92
575 598 0.302890 CAGATGATCTTTCCACGCGC 59.697 55.000 5.73 0.00 0.00 6.86
576 599 1.590238 GTCAGATGATCTTTCCACGCG 59.410 52.381 3.53 3.53 0.00 6.01
577 600 2.349886 GTGTCAGATGATCTTTCCACGC 59.650 50.000 0.00 0.00 0.00 5.34
578 601 3.615937 CAGTGTCAGATGATCTTTCCACG 59.384 47.826 0.00 0.00 0.00 4.94
579 602 4.825422 TCAGTGTCAGATGATCTTTCCAC 58.175 43.478 0.00 0.13 0.00 4.02
580 603 5.485620 CTTCAGTGTCAGATGATCTTTCCA 58.514 41.667 0.00 0.00 0.00 3.53
581 604 4.332268 GCTTCAGTGTCAGATGATCTTTCC 59.668 45.833 0.00 0.00 0.00 3.13
582 605 4.032672 CGCTTCAGTGTCAGATGATCTTTC 59.967 45.833 0.00 0.00 0.00 2.62
583 606 3.931468 CGCTTCAGTGTCAGATGATCTTT 59.069 43.478 0.00 0.00 0.00 2.52
584 607 3.056250 ACGCTTCAGTGTCAGATGATCTT 60.056 43.478 0.00 0.00 32.60 2.40
585 608 2.495270 ACGCTTCAGTGTCAGATGATCT 59.505 45.455 0.00 0.00 32.60 2.75
586 609 2.886081 ACGCTTCAGTGTCAGATGATC 58.114 47.619 0.00 0.00 32.60 2.92
624 647 3.243068 GCACCACAAAGTAAGGTTGACTG 60.243 47.826 0.00 0.00 32.15 3.51
675 698 3.035727 TTTTTCTTCGCGGGGCAC 58.964 55.556 6.13 0.00 0.00 5.01
690 713 7.706100 TTAGTCACCACAAAGTAAGGTTTTT 57.294 32.000 0.00 0.00 32.15 1.94
691 714 7.891498 ATTAGTCACCACAAAGTAAGGTTTT 57.109 32.000 0.00 0.00 32.15 2.43
692 715 8.434392 TCTATTAGTCACCACAAAGTAAGGTTT 58.566 33.333 0.00 0.00 32.15 3.27
693 716 7.970102 TCTATTAGTCACCACAAAGTAAGGTT 58.030 34.615 0.00 0.00 32.15 3.50
694 717 7.549147 TCTATTAGTCACCACAAAGTAAGGT 57.451 36.000 0.00 0.00 35.65 3.50
695 718 7.711339 GGATCTATTAGTCACCACAAAGTAAGG 59.289 40.741 0.00 0.00 0.00 2.69
696 719 8.478877 AGGATCTATTAGTCACCACAAAGTAAG 58.521 37.037 0.00 0.00 0.00 2.34
697 720 8.258007 CAGGATCTATTAGTCACCACAAAGTAA 58.742 37.037 0.00 0.00 0.00 2.24
698 721 7.618117 TCAGGATCTATTAGTCACCACAAAGTA 59.382 37.037 0.00 0.00 0.00 2.24
699 722 6.440647 TCAGGATCTATTAGTCACCACAAAGT 59.559 38.462 0.00 0.00 0.00 2.66
700 723 6.878317 TCAGGATCTATTAGTCACCACAAAG 58.122 40.000 0.00 0.00 0.00 2.77
701 724 6.867519 TCAGGATCTATTAGTCACCACAAA 57.132 37.500 0.00 0.00 0.00 2.83
702 725 6.867519 TTCAGGATCTATTAGTCACCACAA 57.132 37.500 0.00 0.00 0.00 3.33
703 726 6.867519 TTTCAGGATCTATTAGTCACCACA 57.132 37.500 0.00 0.00 0.00 4.17
704 727 6.203723 GCATTTCAGGATCTATTAGTCACCAC 59.796 42.308 0.00 0.00 0.00 4.16
705 728 6.100279 AGCATTTCAGGATCTATTAGTCACCA 59.900 38.462 0.00 0.00 0.00 4.17
706 729 6.529220 AGCATTTCAGGATCTATTAGTCACC 58.471 40.000 0.00 0.00 0.00 4.02
707 730 6.364706 CGAGCATTTCAGGATCTATTAGTCAC 59.635 42.308 0.00 0.00 0.00 3.67
708 731 6.450545 CGAGCATTTCAGGATCTATTAGTCA 58.549 40.000 0.00 0.00 0.00 3.41
709 732 5.347364 GCGAGCATTTCAGGATCTATTAGTC 59.653 44.000 0.00 0.00 0.00 2.59
710 733 5.233988 GCGAGCATTTCAGGATCTATTAGT 58.766 41.667 0.00 0.00 0.00 2.24
711 734 4.325741 CGCGAGCATTTCAGGATCTATTAG 59.674 45.833 0.00 0.00 0.00 1.73
712 735 4.237724 CGCGAGCATTTCAGGATCTATTA 58.762 43.478 0.00 0.00 0.00 0.98
713 736 3.062763 CGCGAGCATTTCAGGATCTATT 58.937 45.455 0.00 0.00 0.00 1.73
714 737 2.036475 ACGCGAGCATTTCAGGATCTAT 59.964 45.455 15.93 0.00 0.00 1.98
715 738 1.409064 ACGCGAGCATTTCAGGATCTA 59.591 47.619 15.93 0.00 0.00 1.98
716 739 0.176680 ACGCGAGCATTTCAGGATCT 59.823 50.000 15.93 0.00 0.00 2.75
717 740 1.523095 GTACGCGAGCATTTCAGGATC 59.477 52.381 15.93 0.00 0.00 3.36
718 741 1.571919 GTACGCGAGCATTTCAGGAT 58.428 50.000 15.93 0.00 0.00 3.24
719 742 0.800683 CGTACGCGAGCATTTCAGGA 60.801 55.000 15.93 0.00 41.33 3.86
720 743 1.076533 ACGTACGCGAGCATTTCAGG 61.077 55.000 15.93 0.00 42.00 3.86
721 744 0.023732 CACGTACGCGAGCATTTCAG 59.976 55.000 15.93 0.00 42.00 3.02
722 745 2.066807 CACGTACGCGAGCATTTCA 58.933 52.632 15.93 0.00 42.00 2.69
723 746 4.925786 CACGTACGCGAGCATTTC 57.074 55.556 15.93 0.00 42.00 2.17
729 752 1.955529 AATGCTTGCACGTACGCGAG 61.956 55.000 15.93 10.29 44.91 5.03
730 753 1.951181 GAATGCTTGCACGTACGCGA 61.951 55.000 15.93 0.00 42.00 5.87
731 754 1.577616 GAATGCTTGCACGTACGCG 60.578 57.895 16.72 3.53 44.93 6.01
732 755 0.519175 CAGAATGCTTGCACGTACGC 60.519 55.000 16.72 0.00 0.00 4.42
733 756 3.568181 CAGAATGCTTGCACGTACG 57.432 52.632 15.01 15.01 0.00 3.67
780 803 5.123936 GGGGATTGTGTTAGGTCTGTAATC 58.876 45.833 0.00 0.00 0.00 1.75
782 805 3.911260 TGGGGATTGTGTTAGGTCTGTAA 59.089 43.478 0.00 0.00 0.00 2.41
783 806 3.522759 TGGGGATTGTGTTAGGTCTGTA 58.477 45.455 0.00 0.00 0.00 2.74
784 807 2.344592 TGGGGATTGTGTTAGGTCTGT 58.655 47.619 0.00 0.00 0.00 3.41
791 814 1.922447 AGAGCCATGGGGATTGTGTTA 59.078 47.619 15.13 0.00 35.59 2.41
800 823 2.112718 GCTGCTAGAGCCATGGGG 59.887 66.667 15.13 0.00 42.54 4.96
840 863 7.546778 TGTTGTTTATATAGCGCAGATGAAA 57.453 32.000 11.47 0.99 0.00 2.69
843 866 7.177498 TCTTGTTGTTTATATAGCGCAGATG 57.823 36.000 11.47 0.00 0.00 2.90
846 869 5.896432 CGTTCTTGTTGTTTATATAGCGCAG 59.104 40.000 11.47 0.00 0.00 5.18
958 1042 3.500299 CGATCGATCTCTCTTCCTTGCTA 59.500 47.826 22.43 0.00 0.00 3.49
960 1044 2.292016 TCGATCGATCTCTCTTCCTTGC 59.708 50.000 22.43 0.00 0.00 4.01
961 1045 4.274705 TCTTCGATCGATCTCTCTTCCTTG 59.725 45.833 20.18 3.79 0.00 3.61
962 1046 4.456535 TCTTCGATCGATCTCTCTTCCTT 58.543 43.478 20.18 0.00 0.00 3.36
963 1047 4.065088 CTCTTCGATCGATCTCTCTTCCT 58.935 47.826 20.18 0.00 0.00 3.36
964 1048 3.188460 CCTCTTCGATCGATCTCTCTTCC 59.812 52.174 20.18 0.00 0.00 3.46
965 1049 4.062293 TCCTCTTCGATCGATCTCTCTTC 58.938 47.826 20.18 0.00 0.00 2.87
966 1050 4.079980 TCCTCTTCGATCGATCTCTCTT 57.920 45.455 20.18 0.00 0.00 2.85
967 1051 3.762407 TCCTCTTCGATCGATCTCTCT 57.238 47.619 20.18 0.00 0.00 3.10
968 1052 6.509517 CGATATTCCTCTTCGATCGATCTCTC 60.510 46.154 20.18 5.84 41.42 3.20
969 1053 5.293324 CGATATTCCTCTTCGATCGATCTCT 59.707 44.000 20.18 3.23 41.42 3.10
970 1054 5.498159 CGATATTCCTCTTCGATCGATCTC 58.502 45.833 20.18 8.09 41.42 2.75
1021 1124 1.679032 GGTGCCCAGTACCTTGACATC 60.679 57.143 0.00 0.00 35.44 3.06
1022 1125 0.328258 GGTGCCCAGTACCTTGACAT 59.672 55.000 0.00 0.00 35.44 3.06
1023 1126 1.758592 GGTGCCCAGTACCTTGACA 59.241 57.895 0.00 0.00 35.44 3.58
1359 1462 2.286523 CCTGTCTTCCTCCGTGGCT 61.287 63.158 0.00 0.00 35.26 4.75
1497 1600 1.059584 TCCAGAAGAGGTTGCACCCA 61.060 55.000 2.00 0.00 39.75 4.51
1602 1848 2.048222 TTTGCAGCCTCCGTCTCG 60.048 61.111 0.00 0.00 0.00 4.04
1716 2124 2.229792 GTGACCACTGCAAATCTCCAA 58.770 47.619 0.00 0.00 0.00 3.53
1717 2125 1.545428 GGTGACCACTGCAAATCTCCA 60.545 52.381 0.00 0.00 0.00 3.86
1718 2126 1.168714 GGTGACCACTGCAAATCTCC 58.831 55.000 0.00 0.00 0.00 3.71
1719 2127 2.191128 AGGTGACCACTGCAAATCTC 57.809 50.000 3.63 0.00 0.00 2.75
1757 2363 6.003859 TCCTTTAGGTAAACAAGTGACCAA 57.996 37.500 7.16 0.00 35.56 3.67
1785 2391 9.683069 ATCACACAACTTAGAACAATGAAATTC 57.317 29.630 0.00 0.00 31.22 2.17
1832 2438 8.783093 CACAACTTTTACAAAGATAGATGACCA 58.217 33.333 3.24 0.00 0.00 4.02
1833 2439 8.999431 TCACAACTTTTACAAAGATAGATGACC 58.001 33.333 3.24 0.00 0.00 4.02
1896 2941 6.649155 TGTGTACATGGTATAGATTGCAACT 58.351 36.000 0.00 3.93 0.00 3.16
1897 2942 6.918892 TGTGTACATGGTATAGATTGCAAC 57.081 37.500 0.00 0.00 0.00 4.17
1898 2943 8.518430 AATTGTGTACATGGTATAGATTGCAA 57.482 30.769 0.00 0.00 0.00 4.08
1900 2945 8.504005 GGTAATTGTGTACATGGTATAGATTGC 58.496 37.037 0.00 0.00 0.00 3.56
1901 2946 9.554395 TGGTAATTGTGTACATGGTATAGATTG 57.446 33.333 0.00 0.00 0.00 2.67
1917 2962 7.712264 ATTGTCAACATGTTTGGTAATTGTG 57.288 32.000 8.77 0.00 0.00 3.33
1948 2994 1.226603 CGACGTGAGGATCCGGAAC 60.227 63.158 9.01 5.41 33.95 3.62
1952 2998 1.062685 CTGTCGACGTGAGGATCCG 59.937 63.158 11.62 0.00 35.42 4.18
1971 3017 2.960129 GCGATTACGGAGGTGGCG 60.960 66.667 0.00 0.00 40.15 5.69
1981 3027 0.030908 CCTCTGTCTCCCGCGATTAC 59.969 60.000 8.23 0.15 0.00 1.89
1987 3033 3.063084 ACGACCTCTGTCTCCCGC 61.063 66.667 0.00 0.00 39.47 6.13
2004 3050 1.529744 AAAAACACCCCCTCTCTCCA 58.470 50.000 0.00 0.00 0.00 3.86
2021 3067 5.617252 ACCATTACAACCTCTCGAGAAAAA 58.383 37.500 17.36 5.10 0.00 1.94
2022 3068 5.011738 AGACCATTACAACCTCTCGAGAAAA 59.988 40.000 17.36 4.75 0.00 2.29
2023 3069 4.527038 AGACCATTACAACCTCTCGAGAAA 59.473 41.667 17.36 7.02 0.00 2.52
2024 3070 4.082190 CAGACCATTACAACCTCTCGAGAA 60.082 45.833 17.36 0.00 0.00 2.87
2025 3071 3.444034 CAGACCATTACAACCTCTCGAGA 59.556 47.826 15.70 15.70 0.00 4.04
2026 3072 3.429547 CCAGACCATTACAACCTCTCGAG 60.430 52.174 5.93 5.93 0.00 4.04
2061 3107 3.879892 GACAAAACATCTCCTCCCTATGC 59.120 47.826 0.00 0.00 0.00 3.14
2065 3111 1.636003 GGGACAAAACATCTCCTCCCT 59.364 52.381 0.00 0.00 35.37 4.20
2193 3243 9.627123 AGATCGGAGATGGATGTAATTTTTAAA 57.373 29.630 0.00 0.00 45.12 1.52
2225 3275 7.164803 TCCATATAATGCATTCGGTTACATCA 58.835 34.615 16.86 0.00 0.00 3.07
2249 3299 2.587522 GGAATTTATCCCCACCTGCTC 58.412 52.381 0.00 0.00 43.00 4.26
2273 3323 3.680620 TTGGCGGGGATTGCTCTCG 62.681 63.158 0.00 0.00 0.00 4.04
2274 3324 1.378514 TTTGGCGGGGATTGCTCTC 60.379 57.895 0.00 0.00 0.00 3.20
2277 3327 2.679996 GGTTTGGCGGGGATTGCT 60.680 61.111 0.00 0.00 0.00 3.91
2296 3483 2.482326 GATTGAGGTTCAAGCCCCG 58.518 57.895 0.00 0.00 40.05 5.73
2300 3487 1.657751 GCCGGGATTGAGGTTCAAGC 61.658 60.000 2.18 0.00 41.64 4.01
2301 3488 0.322456 TGCCGGGATTGAGGTTCAAG 60.322 55.000 2.18 0.00 40.05 3.02
2309 3496 0.535328 TGTTCGTTTGCCGGGATTGA 60.535 50.000 2.18 0.00 37.11 2.57
2312 3499 1.241315 CCTTGTTCGTTTGCCGGGAT 61.241 55.000 2.18 0.00 37.11 3.85
2313 3500 1.894756 CCTTGTTCGTTTGCCGGGA 60.895 57.895 2.18 0.00 37.11 5.14
2376 3658 5.662657 GGCTCAAATATATGGGGGCAATAAT 59.337 40.000 10.06 0.00 0.00 1.28
2412 3694 2.159435 GCGGAAATGATTGTACCACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2464 3755 2.985809 GCTGCTGTCGATGCTCTAATAG 59.014 50.000 13.16 4.14 0.00 1.73
2499 3827 0.881118 GTGACCGGTTAGTGTCCGTA 59.119 55.000 9.42 0.00 45.63 4.02
2500 3828 1.108727 TGTGACCGGTTAGTGTCCGT 61.109 55.000 9.42 0.00 45.63 4.69
2514 3842 5.105797 TGGATTGCATTATTTGAGGTGTGAC 60.106 40.000 0.00 0.00 0.00 3.67
2520 3848 5.535333 GGATGTGGATTGCATTATTTGAGG 58.465 41.667 0.00 0.00 0.00 3.86
2590 3918 1.067495 GCTCCGCCTAAAGATCGCTAT 60.067 52.381 0.00 0.00 0.00 2.97
2606 3934 2.501610 GGTGACCGGATGAGCTCC 59.498 66.667 9.46 0.00 41.07 4.70
2647 3975 3.431725 CAAAACTCCGGGGAGCGC 61.432 66.667 9.33 0.00 45.54 5.92
2656 3984 2.322830 GCGACCGGACCAAAACTCC 61.323 63.158 9.46 0.00 0.00 3.85
2673 4001 1.078143 CCCACTCTACCTTGCTGGC 60.078 63.158 0.00 0.00 40.22 4.85
2676 4004 1.729586 TTCACCCACTCTACCTTGCT 58.270 50.000 0.00 0.00 0.00 3.91
2680 4008 2.715763 TCCTTTCACCCACTCTACCT 57.284 50.000 0.00 0.00 0.00 3.08
2689 4017 1.762957 TCCATCTCGATCCTTTCACCC 59.237 52.381 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.