>input_sequence_71020
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-------------------------------------------A-------------TGGCCGGCCAAGGA------GAT
GACGATGTCAAGGTACTGGGCACCGCGGCGAGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAATGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGGCCGTCCCGG
TGCTCATCCACGCCGGCAGGCCCGTCTGCGAGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCCGCC
TCGCTCCTCCCGGCGGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACATCGATGACAAGGCTGTCCCCAC
GTGGATAGGCATCATGAGGGCAGCCACGGAGGAAGACAGGGCGGAGAGCCTGGCCGGTGCGCTCGCGGCGGTCGCGCCCT
TGGAGGACGCCTTCGCCCAGTGCTCTAGCGGGAAGGCCTTCTTTGCCGGCGACTCCATCGGTTACCTCGACCTCGTGCTT
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GATCGAGGCGCTGCGCCACATGTTCGG
CATCACGGTCATCGACGCCGGCAGGACTCCGCG--CCTGGCCGCCTGGGCT-------------------------GAAA
GGTTCGTCGAGACGGAGGCTGCAAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCGCCGCCCATGGAAAGCATGTTGGAGGAGGCCGGGAAGCTGCGGG
CTATGTGGGCTGCTGCTGCCGCCCCGGCTGCCAAGTAA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>chr3D_1_TraesCS3D01G429900
CATGTCCGACCTTGCAACATCGGCATGTTGGCTTTTCAGCGTTACCCTTTCGGCTTTGCGGTAGCGGCAAACACCGCCTT
GCAACATTCACATCTCGGCCAGTACCATCGTCACCCGGCCTCGCAGCATTGCGATTCTGGCTTGAAGGAGCAAGGTTTTG
GTTACCGGTCAAAATTTTGAGATTTCCCATGGTTACCACGTATTTCCGTGCCCTTC-GTAAGTCCCCATACCGAGCAAAA
AATACCAATATTT---------TGAATTTAAAAGCTCGATTTATAGTAAAGTACGTAGGATCTACATAATGTCACGAGAG
TTGGTTCTGACGTATTGGTA------------CTGTTTTGAGAGGTCTCTAGTTCGAATGTTCGTTCATTCATTTATTTG
AATTCAAAATTTAACTATAAAATTCGTTCGAAATATTCTCGGTAACCGTGATAACCATGTTTATCAGTTCCCCTCAGTAA
AATTTCCTCATTGGGTAACCAAAACCTTGCCAAGGAGTAGTGGTAGCAGCAGCAATGCGCTACTGCTCCCCGGATGAGTG
GACCGAGTCTCATCGCCGCAGAAAAACGACACTCCAAGCGCGTGGAAAGATCATCTGACACTGAAGCGTCACGTGTGACG
CCAAGCCAGTCAACCTTACTTTGTGGTGCCCCGCAAAGAAAAAAACCTTACTTTATGGTGCCCCGCGAAGAAAAAAACCT
TACTTTGTGGTGACTAATAGATCCTGAAATGCTCGCGTACGTGCAAGCATTCTGCGTACGTATGGGGTGATGCACATATA
CAGATTACAGACCTAACACAATCCCCATGGCTCTAGCAGCTTCTCCAGCAGCAGCTGCTCAGTTTCATCTG-----CGCT
ATATAAACAACAAGAACGAAGCTA-TATACG----------TACACTTGCAAATTGAGCAAAACT---------------
--TAAGCGCACATACGT-ACACAGCAGAGCAAATAG------TTTA----CG--------------AGCACC---AAATA
GTAGCAAGGAAGAGAGATCGATCGAAGAGGAATATCGGAAACGA-------------TGGCCGGCCAAGGA------GAT
GACGATGTCAAGGTACTGGGCACCGCGGCGAGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAATGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGGCCGTCCCGG
TGCTCATCCACGCCGGCAGGCCCGTCTGCGAGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCCGCC
TCGCTCCTCCCGGCGGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCCTACATCGATGACAAGGCTGTCCCCAC
GTGGATAGGCATCATGAGGGCAGCCACGGAGGAAGACAGGGCGGAGAGCCTGGCCGGTGCGCTCGCGGCGGTCGCGCCCT
TGGAGGACGCCTTCGCCCAGTGCTCTAGCGGGAAGGCCTTCTTTGCCGGCGACTCCATCGGTTACCTCGACCTCGTGCTT
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GATCGAGGCGCTGCGCCACATGTTCGG
CATCACGGTCATCGACGCCGGCAGGACTCCGCG--CCTGGCCGCCTGGGCT-------------------------GAAA
GGTTCGTCGAGACGGAGGCTGCAAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCGCCGCCCATGGAAAGCATGTTGGAGGAGGCCGGGAAGCTGCGGG
CTATGTGGGCTGCTGCTGCCGCCCCGGCTGCCAAGTAATTAGTTTGGAGA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTTGCAGTGGTCACC--------TTTTTTTACATCAGCGTCATTGGTCACTTGTTTACCTAAAGGATTATGAATTTCATT
GTTCTAAGTTGTGTGATTGATTTCATTGCATAATAAATGGTCATCTATCTTTGTAAAAGTTGTGATTATGCTCCAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TC
TTATAAG-------------------------------------------------------------------------
--------------------------------------------TGTGTTAAACTTGCAAAGTTGCAATCTATACCATGT
ACACAATTACCAAACATGTTGACAAT-TTTGCCGTTCCGGATCCTCACGTCGACAGCGCCACCTCCGTAATCGCGGGAGA
CAGAGGTCGTGGAGAGAGGGGGTGTTTTTTTCTCGAGAGGTTGTAATGGTCTGGGATTAATTCCACGCATAGGGAGGAGA
TGTTTTGTCCCCGGCAAAAAAAACACAGGGCTGGGACAGAATTGGATGGGG----TTTTTTGCGGGAAAAACTTTCAATT
TATTCATCAAATATCAAGAGAGTAAAAAGAACATAAGAAGCATTTAAAAATTACATCCATCTCCGATCTATTCATGATGT
AACCGAATGCATTATATGGAGCAGGTGGGGATAAATTCCCGGCGAGAGCAATCCCCGCCA--------------------
--------------------------------------------------------------------------------
-------------------------------------AACCGCGGGGCTTGAACCTCAATCCCGGCAAACGAACAAGGCC
TTAGCGTGATG---------------------------------------------------------------------
-------------------------CTTTCAGAG-AAAAAAAAACATCCCACCTAAAATTATTGCCCCCATATATTTGAG
CCTTTTGTTGCTCGTGGTGGTACAATCATTTCCGCACTCACAATGTACGT---------GCAGCATATTTGTTGCTATTA
GAGCATCGACAGCA-------------------------------------GCGCCCGGACGCGTCTACGGACACTAACC
GGTCACACCTCAAATAATGCAATCCACATCCGGATATCTCAATTTAGAAGCCTCAAATCTATATTATTACATGCAACATA
GCGATCTTTAGGCGGAGCTCATCCGGTCACCGTGGCCATGTCCGGCGACCGGCTGCGCTCCCCGGAGTTTTGGTCCGGTC
GCCAGCAAGGTAGAGTGGGTGAAAGGATCGAGATGGAC
>chrUn_151
--------------------------------------------------------------------------------
----------------------------------------------------------------------CAAGGTTTTG
GTTACCGGTCGAAATTTTAAGATTTCCCATGGTTACCGCGTATTTCCGTGCCCTTGGGTAAATCACCATACCGAGCAAAA
AATACCATTTTTTATAAATTTTTGAATTTAAACACTGGATTTACAGTAAAGTACATAGGATCTAATTAATTTCACGAGAG
TTGGTTCTGACGTATTGGTAGCAACCTAGTTCCTATTTTGAGAGGTCTCTAGTTCGTATATTCGTTCATTCACTAATTTA
AACTCAAAATTCAACTATAAAATTCGCTTGAAATATTTTTGGTATTTCTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGTAACCGTGGTAACCACGTTTACTA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GTCTCATTCGGTAACCAAGACCTTGCCCAC
GGCCGCCGGTTAGCTAGTAAAGCTCGTTGGAGACCCAGGGCATATCGAACCACCCGACCTCCGCGATAAACACGCGCGGC
GTCTCCCACATATCCTCCCCCGTGCGATTCCAGCCGAACCATCTGAAGCGCACGTTCAAGTTGGTGTGCATCAAGAAGGG
GATGTCCGTTTGGCAGCAGGCCATGCCGGAACAAACCTTGCCGCCGGGGCCTCTCCTCTCATATGGGGAATAGTAGGTGG
AGTCGCTGCAGAAGAAGGCACATGCGCTCTTGGTGCTATTGGTGTGTTCCTCCTCTACCGTCGCCACCATGTTGCAGCCG
ACCACCACGAGCTCGTTGTGCCAGGGGGACATCCTGTAGGGCCCATCTTTCCTGAGCCAGCTGCCAATTGTGCCGGTGCC
GGTGCCGCCAGCCTCTTCATGTATTTTGATGCTGCCCCTGCGTATGACGCGCACCGTGGAGTTGTGCAACGAGATGTGTG
AAAGATGGCGTTAAGCGTA-----------------------TGCCTAGCAGGGACGCGTTGCATGTTTATATAGGCCAC
AATGTGGCTAGGGTTTACAAGGATCTAGTTGGTTAGGTTGTGGTTTGGTCTCCAAGTTAGCTAAACAAGATAGAGATCCT
CCAACAACCTACCAACAGGATTACATCAAGGAAAAGCTACCGCACCTGGACCTACCGCACTCACCAATGTTGATGTTGAC
TTTGTGACTTTCAAACCTATACTCA-------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAGTACCTGTCAGATATCTCAAGATCCTCTTTACTGTTGTCCAGTGTGCA
AGAGTAGGGGTATGCAAGAACCGACATACTTTATTGATGGGAAAAGATATATCAGGTCTTGTAAGTGTTAGATATTGCAA
GGCACCTACCACACTTCTATAGTTTGTAGATGCTTCAGCACTCAAGGGCTCACCTTCTTCCTCAGATAATTTTTCAGAAG
TTG------------AGAGAGGCATATTTGAAATCTTGCAATTCATCATACCTGCTCGTTTTAACACATCTGACACATAT
TTTTCTTGACTCAAGACTATGCCATCTTTTACCTTCTTTACTTCTATTCCCAAGTAGTGCAAGTCACCAAGATCTTTTAG
AGCAAAGTCTCTTCTTAGATCTAAGCAATGCCTTAGTTGCATCCTGTGATGAACTTGCAACAATAATATCATCAAAATTA
CTAACATGAAAATGATGATTTTTTCCTTTTCTGT----------------------------------------------
--------------------------------------------------------------------------------
------------------AAAAGAACAGTGATGTGTGAGCTTTGGATGGCTGAAAACCAAGCCTTTGGAGTTTTTTACTC
AGCCTAGAGTACTCTACAAAGAGCAGGGTAGCAGATCGGCCAATATCGCCTCCTGCCACCTAGGTTGGGGGGCAGGAGCG
GAAAGAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGCACACGCTGTTACTGCTCTTGCAGATGGCGTGGGTTACGTTCGAGG
GGCATTTATAATCTTCATGGCCACGGAAAATAGCTGCACCCGACGGCTTGACACCCCAC-GCCAGTCGAAGGGGAACCTG
CATGACTTTTTTCGACGGAGACCCACGGCCAAGGTTTTGGTTACCGGTCGAAATTTTAAGATTTCCCATGGTTACCGCGT
ATTTCCGTGCCCTTGGGTAAATCACCATACCGAGCAAAAAATACCATTTTTTATAAATTTTTGAATTTAAACACTGGATT
TACAGTAAAGTACATAGGATCTAATTAATTTCACGAGAGTTGGTTCTGACGTATTGGTAGCAACCTAGTTCCTATTTTGA
GAGGTCTCTAGTTCGTATATTCGTTCATTCACTAATTT------------------------------------------
------------------------------------------------AAACTCAAAATTCAACTATAAAATTCGCTTGA
AATATTTTTGGTA-------------------------------------------------------------------
--------------------------------------
>chr3A_596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACACTGAAGCGTCACGTGTGACG
CCAAGCGAGTCAACCTTCTTCCGGCGAGTGAGAGCCGACACTTGCAACGAGTCGGCTCTTC-------------------
---------------------------------------CGTGCAAGCATGCCGCGCACGCCAATGGCGACGCACATAAT
CACAGA-----------------CCCGTGGCTCTAGCAGCTTCTCTACCACCAACTGGTCAGCCTAATTTCTGCCTCTAT
AAATTAACAAGAAGGACGACGAAGATACTCGTATTATCATACCCACTTGCAAATTCAG------T---------------
--TCAGAGCACCGTGGTCCTCT-----GGCAAATAG------TTTAATCGCG----AG----------------------
---AG------------------GAAGAGATCGGTCGAAAACGA-------------TGGCCGGCGAAGGA------GAC
GGC---GTGAAGCTGCTGGGCACGGTGGTGAGCCCGTTCGCGGTCCGCGTGCGCATGGCGCTGCACCTCAAGGGCGTGAG
CTACGAGGACCTGGAGCAGGACGTGTTCGACAAGGGCGACCTCCTCCTCGCCTCCAACCCAGTGCGCAAGAAGGTCCCCG
TGCTCCTCCACGCCGGCAGGCCCGTCTGCGAGTCGCTAGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCGGCC
CCGCTCCTCCCCGCCGACCCCCACGGCCGCGCCGTCGCGCGCTTCTGGGCCGCCTACGTCGACGACAGGTTGGTCACCGC
GATGTTAGGCATCCTGCGCGCGACCACCGATGAGGAGCGGGCGGAGAGGCTCGACGCCGCGCTCGCGGCGGTCAGGCCCT
TGGAGGACGCCTTTGCCGAGTGCTCTGGCGGCAAGGCCTTCTTCGCGGGCGACTCCGTCGGGTACCTCGACCTCGCGCTC
GGGTGCCACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GTTCGAGGCGCTGCGCGAGATGTTCGG
CGTGATGATCATCGACGCCGGCAGGACTCCGCG--CCTGGCCGCCTGGGCT-------------------------GGAA
GGTTCGCGGAGACGGAGACGGCCGA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCGTCGCCCATCAAGAGCCTAGTGGACTACGCCGGGAAGTTGCGGG
CTATCTGGGCTGCTATTGCCGCG---GCTGCCAACTAATT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>chr3A_739
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------GTGCAAGCATTCTGCGTACGTATGGGGTGATGCACATATA
-------CAGACCCAACACAATTCCCATGGCTCTAGCAGCTTCTCCACCAACAGCTGCCCCGCTTGATTTG-----CGCT
ATATAAACAACAAGAACCAAGCTA-TGTACG----------TACACTTGCAAATTGAGCAAAACT---------------
--TAAGCGCACATACGT-ACACAGCAGAGCAAATAG------TTTA----CA--------------AGCCAAGGAAA---
--------------AGATCGATCGAAGAGGAAGATCGGAAACGA-------------TGGCCGGCCAAGGA------GAT
GAT---GTCAAGGTACTGGGCACGGCGGCGAGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGGCGGTCCCCG
TGCTCATCCACGCCGGCAGGCCCATCTGCGAGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCCGCC
TCGCTCCTCCCCGCGGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCGGCCTACATCGATGACAAGGCTGTCCCCAC
GTGGATAGGCATCATGAGGGCGGCCACGGAGGAGGACAGGGCGGAGGGGCTGGCCGCTGCGCTCGCGGCGGTCGCGCCCT
TGGAGGACGCCTTCGCCCAGTGCTCTGGCGGGAAGGCCTTCTTCGCCGGCGACTCCATCGGGTACCTCGACCTTGCGCTC
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GATCGAGGCGCTGCGCCACATGTTCGG
CGTCACGGTCATCGACGCTGGCAGGACTCCACG--CCTGGCCGCCTGGGCT-------------------------GAGA
GGTTCGAGCAGACGGAGGCTGCAAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCGCCGCCCATGGAAAGCATGTTGGAGGAGGCCGAGAAGCTGCGGG
CCATGTGGGCTGCTGCTGCTGCCCCGGCTGCCAAGTAATTAGTGGCTAGCTGGGAGAAGCTTCTTAATTCAGTTTT----
--------------------------------------------------------------------------------
---------------------------------------------------------CAGTCGCCACTTTTGTTGGAGGT
TTTGCAGTCGTCAATCGTCACCTTTTTTTTACATCAGCGTCAGTGGTCATTG--TTACCTAAAGGATTATAAATTTCATT
GTTCTAAGTTGTGTGATTGGTTTCATTGCATAATAAAATGGTCTTTATCTTTGTAAAAGTTGTGATTATGCTCCACACTT
AGACTAGCCACAGTGGATAGTAACATACACTAGTAACATACACATATCCCTAGACTATGT--------------------
--------------------------TACTATCTTCATAGTGGGTGGTAACTTAAGTGTGGTAACATGCAAAGATTCATT
TATTAGGTTATAGACTCATATTGCATTGGGATATGTGATGTTACAGTAACTACCTAAGTTACTACAACTATCTCTCTCTT
CATTAACTCATTGCCACATAAGCAAATTTGCTGAGTTGGACTTGATGTTACTGCTGAAGTTACTCCCACTGTGGCTAGTC
TTATAAT-------------------------------------------------------------------------
--------------------------------------------TGTGTTAAACTTGCAATT--------TATACCATGT
ATACAATTACCAAACATGTTGACAATCTTTGCCCTTCTGGATCCTCACATCGACAGTGCCGCCTCCATAATCACGGGAGA
CAGAGGTCGCGTAGAGAGGGG-----------TCGAGAGGTTGTAATGGTCTGGGATTAATTCCACACATTGGGAGGAGA
TGTTTTGTCCCCGGCA--AAAAACACAGGGCTGGGAGAGAATTGGATGGGTTTTTTTTTTTGCAGGAAAAACTTTCAATT
TGTTCATCAAACATCAAGAGAGTAAAAAGAACGTAAGAAGCAATTAAAAATTACATCCATCTCCGATCTATTCGAGATGT
AACCGAATGCATTATATGAAGCAGATGAGGATAAATTCCCGGGCAGGGCTATCCCCGCCA--------------------
--------------------------------------------------------------------------------
-------------------------------------AACCGTGGGCTTTGAACCCCAC-CCCGGCAAACGAACAAGGCC
TCAGCGTGATG---------------------------------------------------------------------
-------------------------CTTTCAGAGAAAAAAGAAACATCCCACCTAAGTTTATTGCCCCCATATATTTGAG
CCTTTTGTTGCTCATGGTGGTACAATCATTTCCGCACTCACAATGTACGT---------GCAGCATATTTGTTGTTATTA
GAGCATCTACAGCCACGATGTGCAAATCTGGCCCTCCAAACGCCCGCAAACGCGTCCGGACGCGTCCGCGGACACTAACC
GATCACATCTCAAATAATGCAATCCACATCCGGATACCTTGAATTAGAAACCTCAAATTTATATTATTACATGCAACGTA
GCGATCTTTAGGCAGAGCTCGTCCGGTTGCCGTGGCCATGCCCAATGACCGGCTACGCTCCCTAGAGTTTTGGTCCGGTC
ACCGGCAGGGTAGAGTAGGG------------------
>chr3B_739
GTGCATGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TGCTGCGTACGTCAAGGGTGATGCGCATAGC
CGTGGACCC-ACCCAACACAATTCCCATGGCTCTAGTAGCTTCTCTTCCAACAACTGCTCAGCTTGATTTG-----CAAT
ATATAAACAACGAGAACGAAGCTA-TGTACG----------CACACTTGCAAATTGAG------TATCAAGAGCTTGAAG
CTTAAGAGAACACACACGACACAGCAGAGCAAACAGGAGTAGTTTA----CA--------------AGCGGC---AAAT-
---AG------------------GAAGAGATCGATCCAAGACGA-------------TGGCCGGCGAAGGA------GAC
GAC---GTCAAGCTGCTGGGCTCGGTGGTGAGCCCGTTCGCGGTCCGCGTGCGAATGGCGCTGCACCTCAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGTGAGCTCCTCCTCGCCGCCAACCCGGTGCTCAAGAAGGTTCCCG
TGCTCATCCACGCCGGCAGGCCCGTCTGCGAGTCGCTCGCCATCGTGGAGTACGTCGACGATGTCTGGGCCGACGGCGCC
TCGCTCCTCCCTGCCGACTCTTACGGCCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGTTGTTCCCCGC
GTGGATAGGCATCCTGCGCGCGTCCACGGAGGAGGACAGAGCCGAGAGGCTCGACGCCACTCTCGCGGTGGTCGGGCTCA
TGGAGGACGCCCTCGCCCAGTGCTCCGGTGGGAAGGACTTCTTCGCCGGCGACTCCGTCGGGTACCTCGACCTTGCGCTC
GGGTGCAACCTGTCCTG---------------------------------------------------------------
-----------------------------------------------------GTTCAAGGCGCTGCGCGAGATGTTCGG
CGTGACGGTCATCGACGCCAGCAGGACTCCGCG--CATGGCCGCCTGGGCT-------------------------GAGA
AGTTCGAGCAGACGGAGGCGGCGAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GGAGGCGGCCCCGCCCATGAAGAGTATGGTGGAGCACGCCGGGAAGCTGCGGG
CTATGTGGGCTGCTGCTGCCGCG---GCTGCCAAGTAAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3D_810
TCTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGCTACTCTTCCAGCCACTGTTCAGCTTGATTTG-----CGCT
ATATAAACAACCAGAACGAACCTAATAGACG----------TACACTTCCAAACTCAG------T---------------
--TAAGAGCACATACGT-ACACAGCAGAGCAAACAG------TTTA----CGATCGAGCACCAAATAGCAAATAGTAGTA
GCAAG------------------GAAGAGATCGATCCAAGACGA-------------TGGCCGGCGAAGGA------GAT
------GTGAAGCTGCTGGGCACGGTGGTGAGCCCGTTCGCGATCCGCGTGCGCATGGCCCTGCATCTCAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCGACAAGGGCGAGCTCCTCCTCGACTCCAACCCGGTGCACAAGAAGGTCCCCG
TGCTCATCCATGTCGGCAGGCCCATCTGCGAGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGACGGCGCC
TCGCTCCTCCCTGCCGACCCCTACGGCCGCGCTGTCGCCCGTTTCTGGGCCGCCTACATCGACGACAAGCTATTCCCCGC
GTGGATAGGCATCCTGCGCGCCGCCACGGAGGAAGACAGAGCCGAGAAGCTCGACGCAGCGCTCGCGGTGGTCGGGCCCT
TGGAGGACGCCCTCGCCCAGTGCTCTGGTGGGAAAGACTACTTCGCCGGCGACTCCGTCGGGTACCTTGACATCGCGCTC
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GTTCGAGGCGCTCCATGAGATGTTCGG
CGTGACGGTCATCGACGCAGGCAGGACTCCGCG--CTTGGCCGCCTGGGCT-------------------------GAGA
GGTTCGTGGAGACGGAGGCGGCCAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCTGCCCCGCTCATGAAGAGCATGGTGGACTATGCCGGGAAGCTGCGGA
GTATGTGGGCTGCTGCCGCCGCC---GCTGCCAAGTAATTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3D_810
TCTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGCTACTCTTCCGGCAACTGTTCAGCTTGATTTG-----TGCT
AGAGAAACAGCCAGAACGATGCTAATATACG----------TACACTTCCAAACTGAG------T---------------
--TAAGAGCACATACGT-ACACAGCAGGGCAAACAG------TTTA----CG--------------AGCACC---AAATA
GCAAG------------------GAAGAGATCGATCCAAGACGA-------------TGGCCGGCCAAGGA------GAC
------GTGAAGCTGCTGGGCACGGGGGTGAGCTCCTTCGCGGTCCGCGTGCGCATGGCCCTGCATCTCAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCGACAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGAAGGTCCCCG
TGCTCATCCACGCCGGCAGGCCCGTCTGCGAGTCGCTCGCCATCGTTGAGTACGTCGACGAGGTCTGGGCCAACGGCGTC
TCGCTCCTCCCCGCAGACCCCTACGCCCGCGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGCTGTCCCCCGC
GTGGATAGGCATCCTGCGCGCCGCCTCGGAGGAGGACAGAGCCGAGAAGCTTGACACGGCGCTCGCGGTGGTCGGGCCCA
TGGAGGACGCCCTCGCCCACTGCTCTGGTGGGAAAGACTACTTCGCCGGCGACTCCGTCGGGTACCTTGACATCGCGCTC
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GTTTGAGGCGCTCCGCGAGATGTTCGG
CGTGACGGTCATCGACGCAGGCAGAACTCCGCG--CTTGGCAGCCTGGGCT-------------------------GAGA
GGTTCGTGCAGACGGAGGCGGCCAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCCCCGTCCATGACGAGCATGGTGGACTGCGCCGGGAAGCTGCAGA
GCATGTGGGCCGCCGC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3B_810
TCTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGCTACTCTTCCAGCAACTGTTCAGCTTGATTTG-----CACT
ATATAAACAACCAGAACGAACCTAATAGACG----------TACACTTCCAAACTCAG------T---------------
--TAAGAGCACATACGT-ACACAGCAGAGCAAACAG------TTTACGATCG--------------AGCACC---AAATA
GCAAA------------------AAAGAGGTCGATCCAAGACGA-------------TGGCCAGCGAAGGA------GAT
------GTGAAGCTGCTGGGCACGGTGGTGAGCCCGTTCGCGGTCCGCGTGCGCATGGCCCTGCATCTTAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCGACAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGGTCCCCG
TGCTCATCCACGCCGACAGGCCCGTCTGCGAGTCGCTCGCCATCGTCGAGTACGTCGACCAGGTCTGGACTGATGCAGCC
TCGATCCTCCCCGCGGACCCCTACGGCCGTGCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGCTGTTCCCCGC
GTGGATAGGCATCCTGCGCGCCGCCACGGAGGAGGACAGAGCCGAGAAGCTCGACGCCGCGCTCGCGGTGGTCGGGCCCA
TGGAGGAGGCCCTCGCCCAGTGCTCAGGTGGGAAAGACTACTTCGCCGGCGACTCCGTCGGGTACCTTGACATCGCGCTC
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GTTCGAGGCGCTCCGCGAGATGTTTGG
CGTGACGATCATCGCCGCCGGCAGCACTCCTCT--TTTGGCCGCCTGGGCT-------------------------GAGA
GGTTCGTGCAGAGGGAGGCGGCCAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCCCCGCCCATGAAGAGCATGGTGGACTACGCCGGGAAGCTGCGGA
GTATCTGGGCTGCTGCTGCCACC---GCTGCCAAGTAATTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3A_814
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCAGCTACTCTTCCAGCAGCTGTTCAGCTTGATTTG-----CGCT
ATATAAACAACCAGAGCAAAGCTA-TATACG----------TACACTTTCAAACTGAG------T---------------
--TAAGAGCACATACAT-ACACAGCAGAGCAAACTG------TTTACGGTCG----AGCACCAAGTAGCAAA---TAGTA
GCAAG------------------GAAGAGATCGATCCAAGACGA-------------TGGCCGGTGAAGGA------GAT
------GTGAAGCTGCTGGGCACGGTGGTGAGCCCGTTCGCGGTCCGCGTGTGCATGGCCCTGCACCTCAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTCTTCAACAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGGTCCCCG
TGCTCATCCACGCCGGCAGGCCCGTCTGCGAATCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCAGCC
TCGCTCCTCCCCGCGGACCCCTATGGCCGTGCCGTCGCCCGCTTCTGGGCCGCCTACCTCGACGATAAGCTGTTCCCCGC
GTGGATAGGCATCCTACGCGCCGTCACGGAGGAGGACAGAGCCGAGAAGCTCCACGCCGCGCTCGCGGTGGTCGGGCCCA
TGGAGGACGCCCTCGTGCAGTGCTCTGGTGGGAAAGACTACTTCGCCGGCGACTCCGTCGGGTACCTTGACATCGCGCTC
GGGTGCAACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GTTCGAGGCGCTCCATGAGATGTTCGG
CGTGACGGTCATCGACGCAGGCAGGACTCCGCG--CTTGGCCGCCTGGGCT-------------------------GAGA
GGTTCGTGGAGACGGATGCGGCCAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCTGCCCCGCCCATGAAGAGCATGGTGGACTACGCCGGGAAGCTGCGGA
GTATGTGGGCTGCCGCTGCCGCC---GCTGCCAAGTAATTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3B_852
CTAGTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TAAACAACAA-AACAAAGCTA-TGTACG----------TACACTTGCAAATTGAGCAAAACT---------------
--TAAGAGCACATACGT-ACACAGCAGAGCAAATAG------TATACG------------------AGCAAC---AAATA
GCAAG------------------GAAGAGATAGATCCAAGACGAAGATCGGAAACGATGGCCGGCCAAGGAAATGATGAT
------GTCAAGGTACTGGGCACGGCGGCGAGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAAGGGCGTGAG
CTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGCGACCTCCTTCTCACCTCCAACCCGGTGCGCAAGGCCGTCCCCG
TGCTCATCCACGCCGGCAGGCCCGTCTGCGAGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGCCGAT----GCC
TCGCTCCTCCCTGCCGACCCCTACGACCGCGCCGTCGCCCGCTTCTGGGCCGCATATGTCGACGACAAGGCTGTCCCCAC
GTGGATAGGCATCATGAGGGCGGCCACGGAGGAGGACAGGGCGGAGAGCCTGGCAGCTGCGCTCGAGGCGGTCGCGCCCT
TGGAGGACGCCTTCGCCCATTGCTCTAGCGGGAAGGCCTTCTTCGCCGGAGACTCTATCGGGTACC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_995
GAAAT---------------------------------------------------------------------------
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------------------------------------------------------CGATGGCCGGCGAAGGA---GACGAC
------GTCAAGCTGCTGGGCACGGTGGTGAGCCCGTTCGCGGTCCGCGTACGCATGGCGCTGCACCTCAAGGGCGTGAG
CTACGAGGACCTGGAGCAGGACGTGTTCGACAAGGGCGACCTCCTCCTCGCCTCCAACCCGGTGCGCAAGAAGGTCCCCG
TGCTCCTCCACGCCGGCAGGCCCGTCTCCGAGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCGGCC
TCGCTCCTCCCCGCCGACCCCCACGGCCGCGCCGTCGCGCGCTTCTGGGCAGCCTACGTCGACGACAAGGTGGTCACCGC
GATGTTAGGCATCCTGCGCGCGACCACCGAGGAGGAGCGGGCGGAGAGGCTCGACGCCGCGCTCGCGGCGGTCAGGCCCA
TGGAGGACGCCTTTGCCGAGTGCTCTGGCGGCAAGGCCTTCTTCGCGGGCGACTCCGTCGGGTACCTCGACCTCGCGCTC
GGGTGCCACCTCTTCTG---------------------------------------------------------------
-----------------------------------------------------GTTCGAGGCGCTGCGCGAGATGTTCGG
CGTGATGATCATCGATGCCGGCAGGACTCCGCG--CCTGGCCGCCTGGGCT-------------------------GGAA
GGTTCGCGGAGACGGAGACGGCCAA-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAGGCGGCGTCGCCCATTAAGAGCATAGTGGAATACGCCGGGAAGCTGCGGG
CTATCTGGGCTGCTATTGCCGCG---GCTGCCAAGTAATTA---------------------------------------
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>SNPs
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
----------S-------S------------------S-----------------S-----S--S---------------
-------S-S----------------------SS--S------S----------S---------SS----S---------
----------------------------------S---------------------S--S------------S-S----S
--S--------S--------------S-S--------S-S----SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
------S----------SS-SS-SS-S-SSSSSSSSSSS-SSSSSSSSS-S-SSSSSS-S-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
--S-SSS------S--------S------------------------S--------------S--S--S-----------
--------------------------------------------------------------------------------
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-S-SSSSSSSSSSS------------------S-----------------------------------------------
---SSS-----------------------------------------------------------------S--------
------------------------------------------------------------------------------S-
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-----------S--------------------------------------------------------------------
---------------------S----------------------------------S-----------------------
-------------------------------------------S-------------------------------S---S
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-------S------------------------------------------------------------------------
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-------------------------------------------SSSS--S------------------------------
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--------S----SS---------------------------S------S-SSS----------------S---------
-------------------S-----------------SS-SSS-S-----------------------------------
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------S-------------------------------------------------------------------------
------------------------------------------------------------SSS-SSS-------------
-S-------------------------------S---S----------S-------S---S-----S-----S-------
---------S-S---------SSSSSSSSSSS----------------------------------S---S---------
----------------SS------------------S-------------S------------S----------------
-S---------S------------------------------S-------------------------------S-----
------------------S-----S--S--------------SS--S--S------------------------------
--------------------------------------------------------------------------------
------------------------------------------S---SS-------S--SS--------------------
-S------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-------------S------------------------------------------------------------S-----
-------S-----S----------------------------------------S-----------SS------------
-S-----S----------------------------S--SS-S------S--------S------------------S--
-------------S------S------SS-----------S--SSS--------S-------SS----------------
S--S---S--------S--SSSSSSSSSSSSSSSSSSS
>forward_601
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---------------------AAAAACGACACTCCAAGCGC---------------------------------------
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>reverse_3027
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------------------------------------------------------------------GTAATCGCGGGAGA
CAGAGG--------------------------------------------------------------------------
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