Multiple sequence alignment - TraesCS3D01G419200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G419200 chr3D 100.000 4035 0 0 1 4035 531707979 531703945 0.000000e+00 7452.0
1 TraesCS3D01G419200 chr3D 90.741 54 5 0 1049 1102 531848678 531848625 5.590000e-09 73.1
2 TraesCS3D01G419200 chr3A 92.350 1451 67 16 2358 3791 666243222 666241799 0.000000e+00 2025.0
3 TraesCS3D01G419200 chr3A 87.805 656 56 12 1306 1943 666244388 666243739 0.000000e+00 747.0
4 TraesCS3D01G419200 chr3A 90.942 276 18 5 1964 2232 17316418 17316143 8.240000e-97 364.0
5 TraesCS3D01G419200 chr3A 87.838 148 14 3 2214 2360 202001566 202001710 1.930000e-38 171.0
6 TraesCS3D01G419200 chr3A 85.526 152 17 4 2214 2364 242657566 242657419 1.940000e-33 154.0
7 TraesCS3D01G419200 chr3A 79.808 208 28 10 2515 2709 17315986 17315780 5.440000e-29 139.0
8 TraesCS3D01G419200 chr3A 90.741 54 5 0 1049 1102 666636976 666636923 5.590000e-09 73.1
9 TraesCS3D01G419200 chr3B 86.927 1461 121 33 645 2080 703333689 703332274 0.000000e+00 1576.0
10 TraesCS3D01G419200 chr3B 89.858 1193 68 21 2358 3543 703331436 703330290 0.000000e+00 1483.0
11 TraesCS3D01G419200 chr3B 77.984 645 99 26 17 635 156655901 156656528 8.240000e-97 364.0
12 TraesCS3D01G419200 chr3B 88.889 54 6 0 1049 1102 703595196 703595143 2.600000e-07 67.6
13 TraesCS3D01G419200 chr3B 100.000 34 0 0 2707 2740 744975806 744975839 3.370000e-06 63.9
14 TraesCS3D01G419200 chr6A 91.667 276 16 5 1964 2233 53217836 53218110 3.810000e-100 375.0
15 TraesCS3D01G419200 chr6A 91.882 271 16 4 1968 2233 56774842 56775111 1.370000e-99 374.0
16 TraesCS3D01G419200 chr6A 90.217 276 20 5 1964 2233 374977791 374978065 1.780000e-93 353.0
17 TraesCS3D01G419200 chr6A 86.755 151 18 2 2214 2364 57502850 57502702 2.490000e-37 167.0
18 TraesCS3D01G419200 chr6A 86.842 152 16 3 2214 2364 401453560 401453708 2.490000e-37 167.0
19 TraesCS3D01G419200 chr6A 86.184 152 17 3 2214 2364 53218126 53218274 1.160000e-35 161.0
20 TraesCS3D01G419200 chr6A 84.868 152 19 4 2214 2364 56775127 56775275 2.510000e-32 150.0
21 TraesCS3D01G419200 chr6A 79.808 208 28 10 2515 2709 56775269 56775475 5.440000e-29 139.0
22 TraesCS3D01G419200 chr6A 79.808 208 28 10 2515 2709 57502708 57502502 5.440000e-29 139.0
23 TraesCS3D01G419200 chr6A 78.846 208 30 10 2515 2709 401453702 401453908 1.180000e-25 128.0
24 TraesCS3D01G419200 chr2A 91.304 276 17 5 1964 2233 148011735 148011461 1.770000e-98 370.0
25 TraesCS3D01G419200 chr2A 80.288 208 27 10 2515 2709 148011303 148011097 1.170000e-30 145.0
26 TraesCS3D01G419200 chr5A 90.942 276 18 5 1964 2233 680370045 680370319 8.240000e-97 364.0
27 TraesCS3D01G419200 chr5A 90.182 275 21 6 1964 2233 671285088 671285361 1.780000e-93 353.0
28 TraesCS3D01G419200 chr5A 86.184 152 17 3 2214 2364 680370335 680370483 1.160000e-35 161.0
29 TraesCS3D01G419200 chr5A 80.392 204 26 10 2515 2705 680370477 680370679 4.200000e-30 143.0
30 TraesCS3D01G419200 chr1A 90.942 276 18 5 1964 2233 275109006 275109280 8.240000e-97 364.0
31 TraesCS3D01G419200 chr1A 86.842 152 16 3 2214 2364 275109296 275109444 2.490000e-37 167.0
32 TraesCS3D01G419200 chr1A 79.808 208 28 9 2515 2709 275109438 275109644 5.440000e-29 139.0
33 TraesCS3D01G419200 chr1A 78.922 204 29 10 2515 2705 411869230 411869432 4.230000e-25 126.0
34 TraesCS3D01G419200 chr7A 90.217 276 20 5 1964 2233 623708154 623708428 1.780000e-93 353.0
35 TraesCS3D01G419200 chr7A 85.811 148 17 3 2214 2360 623708444 623708588 1.940000e-33 154.0
36 TraesCS3D01G419200 chr2D 83.636 110 17 1 17 126 83175866 83175758 7.130000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G419200 chr3D 531703945 531707979 4034 True 7452.000000 7452 100.000000 1 4035 1 chr3D.!!$R1 4034
1 TraesCS3D01G419200 chr3A 666241799 666244388 2589 True 1386.000000 2025 90.077500 1306 3791 2 chr3A.!!$R4 2485
2 TraesCS3D01G419200 chr3A 17315780 17316418 638 True 251.500000 364 85.375000 1964 2709 2 chr3A.!!$R3 745
3 TraesCS3D01G419200 chr3B 703330290 703333689 3399 True 1529.500000 1576 88.392500 645 3543 2 chr3B.!!$R2 2898
4 TraesCS3D01G419200 chr3B 156655901 156656528 627 False 364.000000 364 77.984000 17 635 1 chr3B.!!$F1 618
5 TraesCS3D01G419200 chr6A 56774842 56775475 633 False 221.000000 374 85.519333 1968 2709 3 chr6A.!!$F3 741
6 TraesCS3D01G419200 chr2A 148011097 148011735 638 True 257.500000 370 85.796000 1964 2709 2 chr2A.!!$R1 745
7 TraesCS3D01G419200 chr5A 680370045 680370679 634 False 222.666667 364 85.839333 1964 2705 3 chr5A.!!$F2 741
8 TraesCS3D01G419200 chr1A 275109006 275109644 638 False 223.333333 364 85.864000 1964 2709 3 chr1A.!!$F2 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 468 0.037697 TACTACAGTGGTGCTTGCCG 60.038 55.0 0.0 0.0 0.0 5.69 F
515 537 0.116143 AAGTGAGTGGAGGAGGAGCT 59.884 55.0 0.0 0.0 0.0 4.09 F
1918 2365 0.105593 ATAGACCGATGCTGGCACTG 59.894 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1426 1468 0.034089 ATCTTGCTACTGTTGCCCCC 60.034 55.0 11.51 0.0 0.00 5.40 R
2140 2693 0.035343 GTTCCCTTCTGGTAGCCACC 60.035 60.0 0.00 0.0 46.00 4.61 R
3586 4322 0.733150 TGATAGCTCACGGAGTCACG 59.267 55.0 0.00 0.0 41.61 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.124819 CTCCATTGCAGCTCCGCT 60.125 61.111 0.00 0.00 40.77 5.52
67 68 1.748122 CTTGATTGCAGCTCCGCCT 60.748 57.895 0.00 0.00 0.00 5.52
68 69 1.712977 CTTGATTGCAGCTCCGCCTC 61.713 60.000 0.00 0.00 0.00 4.70
96 97 3.570638 CGCTCCATTGCAGCTCCG 61.571 66.667 0.00 0.00 34.45 4.63
119 120 2.579787 GTCGCGCGAGTACTGCAT 60.580 61.111 35.75 0.00 0.00 3.96
123 124 2.407616 CGCGAGTACTGCATCGGA 59.592 61.111 0.00 0.00 39.31 4.55
124 125 1.655654 CGCGAGTACTGCATCGGAG 60.656 63.158 0.00 0.00 39.31 4.63
126 127 1.433471 CGAGTACTGCATCGGAGCA 59.567 57.895 0.00 2.85 43.35 4.26
128 129 0.867753 GAGTACTGCATCGGAGCACG 60.868 60.000 0.00 0.00 40.11 5.34
138 139 4.100981 GGAGCACGAGACTGCATC 57.899 61.111 0.00 0.00 39.86 3.91
159 160 3.782244 GCGCAGACGAGGTTGCAG 61.782 66.667 0.30 0.00 43.93 4.41
164 165 3.782244 GACGAGGTTGCAGCGCAG 61.782 66.667 11.47 1.31 40.61 5.18
187 188 4.557605 CGGCCATGGACGCATTGC 62.558 66.667 30.31 1.80 40.82 3.56
190 191 2.103538 CCATGGACGCATTGCTGC 59.896 61.111 5.56 0.00 45.31 5.25
191 192 2.103538 CATGGACGCATTGCTGCC 59.896 61.111 7.12 8.25 46.07 4.85
192 193 3.142838 ATGGACGCATTGCTGCCC 61.143 61.111 7.12 5.59 46.07 5.36
198 199 4.580551 GCATTGCTGCCCCGCATC 62.581 66.667 0.16 0.00 42.88 3.91
220 221 4.147322 CGACCGTGGATGCGTTGC 62.147 66.667 0.00 0.00 0.00 4.17
221 222 3.047280 GACCGTGGATGCGTTGCA 61.047 61.111 0.00 0.00 44.86 4.08
273 274 1.808390 GTTTCGTATCGCCGGCAGT 60.808 57.895 28.98 16.78 0.00 4.40
275 276 0.526096 TTTCGTATCGCCGGCAGTAC 60.526 55.000 28.98 24.78 0.00 2.73
276 277 2.340453 TTCGTATCGCCGGCAGTACC 62.340 60.000 28.98 8.68 0.00 3.34
277 278 2.842256 CGTATCGCCGGCAGTACCT 61.842 63.158 28.98 5.94 35.61 3.08
278 279 1.007618 GTATCGCCGGCAGTACCTC 60.008 63.158 28.98 5.71 35.61 3.85
279 280 2.198287 TATCGCCGGCAGTACCTCC 61.198 63.158 28.98 0.00 35.61 4.30
280 281 2.635787 TATCGCCGGCAGTACCTCCT 62.636 60.000 28.98 1.61 35.61 3.69
281 282 4.514577 CGCCGGCAGTACCTCCTG 62.515 72.222 28.98 0.98 35.61 3.86
287 288 4.796408 CAGTACCTCCTGCCTCCT 57.204 61.111 0.00 0.00 0.00 3.69
296 297 4.101448 CTGCCTCCTGGTTCCCCG 62.101 72.222 0.00 0.00 35.27 5.73
297 298 4.974438 TGCCTCCTGGTTCCCCGT 62.974 66.667 0.00 0.00 35.27 5.28
312 314 3.964875 CGTTGCTGTGGTGGTGCC 61.965 66.667 0.00 0.00 37.90 5.01
334 336 2.378101 ATGGCTCCCCTCCATGGA 59.622 61.111 15.27 15.27 42.39 3.41
347 360 4.626081 ATGGACGCTATGCCGCCC 62.626 66.667 0.00 0.00 0.00 6.13
350 363 4.830765 GACGCTATGCCGCCCACA 62.831 66.667 0.00 0.00 0.00 4.17
351 364 4.402528 ACGCTATGCCGCCCACAA 62.403 61.111 0.00 0.00 0.00 3.33
352 365 3.576356 CGCTATGCCGCCCACAAG 61.576 66.667 0.00 0.00 0.00 3.16
367 380 0.390124 ACAAGGCCACAACAATGCAG 59.610 50.000 5.01 0.00 0.00 4.41
417 430 2.127758 GCGCGTCAAACACTTCCG 60.128 61.111 8.43 0.00 0.00 4.30
418 431 2.591311 GCGCGTCAAACACTTCCGA 61.591 57.895 8.43 0.00 0.00 4.55
419 432 1.897398 GCGCGTCAAACACTTCCGAT 61.897 55.000 8.43 0.00 0.00 4.18
424 437 2.546368 CGTCAAACACTTCCGATTTCCA 59.454 45.455 0.00 0.00 0.00 3.53
427 440 3.568007 TCAAACACTTCCGATTTCCAAGG 59.432 43.478 0.00 0.00 0.00 3.61
429 442 4.360951 AACACTTCCGATTTCCAAGGTA 57.639 40.909 0.00 0.00 0.00 3.08
430 443 3.671716 ACACTTCCGATTTCCAAGGTAC 58.328 45.455 0.00 0.00 0.00 3.34
432 445 4.529377 ACACTTCCGATTTCCAAGGTACTA 59.471 41.667 0.00 0.00 38.49 1.82
433 446 4.868734 CACTTCCGATTTCCAAGGTACTAC 59.131 45.833 0.00 0.00 38.49 2.73
434 447 4.529377 ACTTCCGATTTCCAAGGTACTACA 59.471 41.667 0.00 0.00 38.49 2.74
438 459 4.181578 CGATTTCCAAGGTACTACAGTGG 58.818 47.826 0.00 2.29 38.49 4.00
443 464 2.038557 CCAAGGTACTACAGTGGTGCTT 59.961 50.000 5.16 0.00 38.49 3.91
445 466 1.002087 AGGTACTACAGTGGTGCTTGC 59.998 52.381 5.16 0.00 36.02 4.01
447 468 0.037697 TACTACAGTGGTGCTTGCCG 60.038 55.000 0.00 0.00 0.00 5.69
459 480 1.440145 GCTTGCCGTGGCTAATCTCC 61.440 60.000 12.84 0.00 42.51 3.71
462 483 1.264749 TGCCGTGGCTAATCTCCTGT 61.265 55.000 12.84 0.00 42.51 4.00
463 484 0.811616 GCCGTGGCTAATCTCCTGTG 60.812 60.000 2.98 0.00 38.26 3.66
465 486 0.811616 CGTGGCTAATCTCCTGTGGC 60.812 60.000 0.00 0.00 0.00 5.01
468 489 0.543749 GGCTAATCTCCTGTGGCTGT 59.456 55.000 0.00 0.00 0.00 4.40
469 490 1.661341 GCTAATCTCCTGTGGCTGTG 58.339 55.000 0.00 0.00 0.00 3.66
470 491 1.208052 GCTAATCTCCTGTGGCTGTGA 59.792 52.381 0.00 0.00 0.00 3.58
475 496 0.743701 CTCCTGTGGCTGTGAGATGC 60.744 60.000 0.00 0.00 0.00 3.91
479 500 0.607217 TGTGGCTGTGAGATGCAAGG 60.607 55.000 0.00 0.00 0.00 3.61
491 512 3.693578 GAGATGCAAGGGGAAGAAAGAAG 59.306 47.826 0.00 0.00 0.00 2.85
498 520 5.278709 GCAAGGGGAAGAAAGAAGAAAGAAG 60.279 44.000 0.00 0.00 0.00 2.85
511 533 2.903135 AGAAAGAAGTGAGTGGAGGAGG 59.097 50.000 0.00 0.00 0.00 4.30
512 534 2.704190 AAGAAGTGAGTGGAGGAGGA 57.296 50.000 0.00 0.00 0.00 3.71
515 537 0.116143 AAGTGAGTGGAGGAGGAGCT 59.884 55.000 0.00 0.00 0.00 4.09
517 539 0.534873 GTGAGTGGAGGAGGAGCTTC 59.465 60.000 0.00 0.00 0.00 3.86
518 540 0.967887 TGAGTGGAGGAGGAGCTTCG 60.968 60.000 0.00 0.00 0.00 3.79
527 549 4.391155 GAGGAGGAGCTTCGTTAGAGATA 58.609 47.826 0.00 0.00 0.00 1.98
540 562 7.286215 TCGTTAGAGATAAGATAAGGTTGGG 57.714 40.000 0.00 0.00 0.00 4.12
562 585 2.743928 GCGGTGGGCAGTCTGAAG 60.744 66.667 3.32 0.00 42.87 3.02
564 587 2.743928 GGTGGGCAGTCTGAAGCG 60.744 66.667 3.32 0.00 0.00 4.68
595 623 0.179134 CGTGGAGAAGGAGGCTTACG 60.179 60.000 0.00 0.00 0.00 3.18
599 627 2.100989 GGAGAAGGAGGCTTACGAGAA 58.899 52.381 0.00 0.00 0.00 2.87
606 634 3.833070 AGGAGGCTTACGAGAAAGAAAGA 59.167 43.478 0.00 0.00 0.00 2.52
608 636 4.806775 GGAGGCTTACGAGAAAGAAAGATC 59.193 45.833 0.00 0.00 0.00 2.75
610 638 5.794894 AGGCTTACGAGAAAGAAAGATCAA 58.205 37.500 0.00 0.00 0.00 2.57
611 639 5.639931 AGGCTTACGAGAAAGAAAGATCAAC 59.360 40.000 0.00 0.00 0.00 3.18
613 641 5.444745 GCTTACGAGAAAGAAAGATCAACCG 60.445 44.000 0.00 0.00 0.00 4.44
621 649 6.660949 AGAAAGAAAGATCAACCGGATGATTT 59.339 34.615 25.97 18.84 40.08 2.17
626 654 8.244113 AGAAAGATCAACCGGATGATTTTTAAC 58.756 33.333 30.59 22.73 41.49 2.01
635 663 5.921408 CCGGATGATTTTTAACGTTTTCCAA 59.079 36.000 5.91 0.00 0.00 3.53
636 664 6.421202 CCGGATGATTTTTAACGTTTTCCAAA 59.579 34.615 5.91 0.00 0.00 3.28
637 665 7.277917 CGGATGATTTTTAACGTTTTCCAAAC 58.722 34.615 5.91 0.00 0.00 2.93
639 667 6.570690 TGATTTTTAACGTTTTCCAAACGG 57.429 33.333 21.96 7.81 46.86 4.44
640 668 6.098017 TGATTTTTAACGTTTTCCAAACGGT 58.902 32.000 21.96 19.09 46.86 4.83
641 669 7.253422 TGATTTTTAACGTTTTCCAAACGGTA 58.747 30.769 21.96 18.16 46.86 4.02
651 679 3.947910 TCCAAACGGTAACTACTCCAG 57.052 47.619 0.00 0.00 0.00 3.86
803 831 4.927782 ACACGCGCAGGCTTGGAA 62.928 61.111 5.73 0.00 42.30 3.53
854 882 1.867233 CGTTATCAAATCCGGCTCTGG 59.133 52.381 0.00 0.00 0.00 3.86
882 910 1.893801 CCCTATAAGATCCGCCGAGTT 59.106 52.381 0.00 0.00 0.00 3.01
950 978 0.389556 GGACCTTCCTCGTTCGTTCC 60.390 60.000 0.00 0.00 32.53 3.62
953 981 1.445582 CTTCCTCGTTCGTTCCCGG 60.446 63.158 0.00 0.00 33.95 5.73
972 1000 2.514871 CGACGCTGCTGCAGATCAG 61.515 63.158 32.30 17.09 45.62 2.90
976 1004 1.221293 GCTGCTGCAGATCAGTCCT 59.779 57.895 32.30 0.00 44.66 3.85
1126 1154 1.449246 CCTTCCTTCTCTGCCTGCG 60.449 63.158 0.00 0.00 0.00 5.18
1144 1172 2.224670 TGCGTCCCCTGTGTTCTTATTT 60.225 45.455 0.00 0.00 0.00 1.40
1163 1191 0.666913 TAGATTGCCCTAGTCGCGAC 59.333 55.000 31.30 31.30 0.00 5.19
1187 1215 1.694525 TGTGTCCCTGGGTGTCCAA 60.695 57.895 13.56 0.00 43.51 3.53
1208 1236 3.838244 GGTGTGGCCTGTGATATAGAA 57.162 47.619 3.32 0.00 0.00 2.10
1252 1280 1.959226 GATCGGCGTGTTGTGTGGT 60.959 57.895 6.85 0.00 0.00 4.16
1254 1282 2.377628 ATCGGCGTGTTGTGTGGTCT 62.378 55.000 6.85 0.00 0.00 3.85
1255 1283 2.177580 CGGCGTGTTGTGTGGTCTT 61.178 57.895 0.00 0.00 0.00 3.01
1256 1284 1.355210 GGCGTGTTGTGTGGTCTTG 59.645 57.895 0.00 0.00 0.00 3.02
1260 1288 1.470890 CGTGTTGTGTGGTCTTGGTTT 59.529 47.619 0.00 0.00 0.00 3.27
1276 1304 7.198306 TCTTGGTTTTCCTAGAAATTCGTTC 57.802 36.000 0.00 0.00 45.78 3.95
1277 1305 5.600908 TGGTTTTCCTAGAAATTCGTTCG 57.399 39.130 0.00 0.00 40.03 3.95
1278 1306 4.083696 TGGTTTTCCTAGAAATTCGTTCGC 60.084 41.667 0.00 0.00 40.03 4.70
1324 1352 0.801067 GTGGTGTCGCGGATGTACTC 60.801 60.000 6.13 0.00 0.00 2.59
1326 1354 0.172803 GGTGTCGCGGATGTACTCTT 59.827 55.000 6.13 0.00 0.00 2.85
1338 1366 6.679638 GCGGATGTACTCTTTACATGTAGTGA 60.680 42.308 5.56 7.54 38.18 3.41
1372 1400 5.446473 CCTGCGTGATGTTAAGATTGAACTC 60.446 44.000 0.00 0.00 0.00 3.01
1375 1403 5.554636 CGTGATGTTAAGATTGAACTCTGC 58.445 41.667 0.00 0.00 0.00 4.26
1377 1405 6.310197 GTGATGTTAAGATTGAACTCTGCAC 58.690 40.000 0.00 0.00 0.00 4.57
1392 1434 3.427573 TCTGCACCACTAGCACTAGTTA 58.572 45.455 7.61 0.00 43.35 2.24
1426 1468 8.870160 TGAATTTCTGTTGGAAGTAAACAATG 57.130 30.769 0.00 0.00 37.10 2.82
1490 1532 4.274214 TGGATCGCTTCAGAATATTTGCAG 59.726 41.667 0.00 0.00 0.00 4.41
1508 1550 5.722021 TGCAGTAAGATGTGTCTTCTGTA 57.278 39.130 13.72 9.67 43.50 2.74
1522 1564 2.552599 TCTGTACCGGCATTTTGTCA 57.447 45.000 0.00 0.00 0.00 3.58
1528 1570 2.238521 ACCGGCATTTTGTCAGTCAAT 58.761 42.857 0.00 0.00 35.84 2.57
1547 1589 5.684184 GTCAATTTTCAGTTAACGTTGTCCC 59.316 40.000 11.99 0.00 0.00 4.46
1598 1640 1.545136 TGTGCAACCATTGTATGCTGG 59.455 47.619 10.92 0.00 40.66 4.85
1607 1649 2.928801 TTGTATGCTGGTGTCAGTGT 57.071 45.000 0.00 0.00 42.78 3.55
1626 1668 1.747355 GTGCTCCTTGTGCATGCTAAT 59.253 47.619 20.33 0.00 42.69 1.73
1636 1678 5.388408 TGTGCATGCTAATTTGTTCATGA 57.612 34.783 20.33 0.00 38.77 3.07
1666 1708 5.301551 TGTTATGCAAGGACAGTGATGTTTT 59.698 36.000 0.00 0.00 0.00 2.43
1674 1716 7.096065 GCAAGGACAGTGATGTTTTTATGTTTC 60.096 37.037 0.00 0.00 0.00 2.78
1716 1758 6.872020 GGACAATTGTAGTGCTAGTGAACTTA 59.128 38.462 11.95 0.00 33.29 2.24
1729 2102 8.995220 TGCTAGTGAACTTATTTTATCAAACGT 58.005 29.630 0.00 0.00 0.00 3.99
1766 2204 4.338118 CAGTTTCTGGTGGCAAAAACTCTA 59.662 41.667 12.73 0.00 39.31 2.43
1822 2260 5.547465 TGGTAATCTACAGTTGTGAAGTGG 58.453 41.667 0.00 0.00 36.12 4.00
1844 2282 1.559682 TGCCAGAAGGACCACTTATCC 59.440 52.381 0.00 0.00 40.21 2.59
1872 2312 6.183360 ACCAAATAGTTAGGCAAACGTTTCAA 60.183 34.615 11.37 0.32 43.29 2.69
1873 2313 6.143278 CCAAATAGTTAGGCAAACGTTTCAAC 59.857 38.462 11.37 12.30 43.29 3.18
1878 2318 3.420839 AGGCAAACGTTTCAACTGAAG 57.579 42.857 11.37 0.00 35.21 3.02
1905 2352 8.969267 CGTCTTTATTCTGTATGTCAATAGACC 58.031 37.037 0.00 0.00 44.33 3.85
1914 2361 1.221414 GTCAATAGACCGATGCTGGC 58.779 55.000 0.00 0.00 38.89 4.85
1915 2362 0.829990 TCAATAGACCGATGCTGGCA 59.170 50.000 0.00 0.00 0.00 4.92
1916 2363 0.940126 CAATAGACCGATGCTGGCAC 59.060 55.000 0.00 0.00 0.00 5.01
1917 2364 0.833287 AATAGACCGATGCTGGCACT 59.167 50.000 0.00 0.00 0.00 4.40
1918 2365 0.105593 ATAGACCGATGCTGGCACTG 59.894 55.000 0.00 0.00 0.00 3.66
1919 2366 1.960040 TAGACCGATGCTGGCACTGG 61.960 60.000 11.70 11.70 0.00 4.00
1952 2399 5.420739 AGTTGGTAAAGCTTTTCAGACCAAA 59.579 36.000 31.60 19.77 45.76 3.28
2007 2472 3.857157 TTAAGGACAGTGTGAGGCTTT 57.143 42.857 0.00 0.00 0.00 3.51
2057 2526 7.282224 ACTGTAGTGTTGCTGAACATCTTTTAA 59.718 33.333 0.00 0.00 43.95 1.52
2058 2527 7.990917 TGTAGTGTTGCTGAACATCTTTTAAA 58.009 30.769 0.00 0.00 43.95 1.52
2082 2551 7.967890 AAAATGAAGGTGATTGAATCCAAAC 57.032 32.000 2.26 0.00 35.67 2.93
2140 2693 3.314913 TGTTGGTAATGTGCAGTTGTGAG 59.685 43.478 0.00 0.00 0.00 3.51
2223 2897 6.313905 AGCATCTCTATTTCGTTACCAGTTTG 59.686 38.462 0.00 0.00 0.00 2.93
2252 2926 7.826690 ACATATTTTAGTAACTTGCAGTTGGG 58.173 34.615 10.59 0.00 39.11 4.12
2269 2943 2.618794 TGGGAAAGCCATCAAAACCAT 58.381 42.857 0.00 0.00 35.15 3.55
2313 2988 9.638239 TTTGAAGAATGTCTTAACAATATTGCC 57.362 29.630 15.48 0.00 36.73 4.52
2363 3072 4.096382 AGTTGTGTTTAGTGACCAAAGCAG 59.904 41.667 0.00 0.00 0.00 4.24
2371 3080 2.157738 GTGACCAAAGCAGCAGATTCT 58.842 47.619 0.00 0.00 0.00 2.40
2372 3081 2.555757 GTGACCAAAGCAGCAGATTCTT 59.444 45.455 0.00 0.00 0.00 2.52
2373 3082 2.555325 TGACCAAAGCAGCAGATTCTTG 59.445 45.455 0.00 0.00 0.00 3.02
2440 3152 8.880750 GTTTTACTACCCTCTATGAACATGTTC 58.119 37.037 28.10 28.10 39.91 3.18
2458 3170 9.903682 AACATGTTCTCATAACATCTTTCAAAG 57.096 29.630 4.92 0.00 38.69 2.77
2465 3177 9.212641 TCTCATAACATCTTTCAAAGTTCAGAG 57.787 33.333 0.00 0.00 0.00 3.35
2564 3276 4.951715 TGAAAGGATGCACTGATTTATGCT 59.048 37.500 0.00 0.00 42.55 3.79
2590 3302 4.289238 TGACTTAAGGTTGCGGGATTTA 57.711 40.909 7.53 0.00 0.00 1.40
3004 3730 2.673523 GCCATGCTCCACCAGACT 59.326 61.111 0.00 0.00 0.00 3.24
3011 3737 2.533435 TCCACCAGACTGGAGGCT 59.467 61.111 28.10 4.83 46.30 4.58
3016 3742 3.699894 CAGACTGGAGGCTGCCGT 61.700 66.667 13.96 2.13 0.00 5.68
3045 3771 1.878975 GCGCCTAGAAGAAGCCGTC 60.879 63.158 0.00 0.00 0.00 4.79
3171 3897 1.216990 AGCTGAAGGACATTAGGGGG 58.783 55.000 0.00 0.00 0.00 5.40
3280 4006 8.793592 GTCTTTTTAGTACTCCCAATGATTTGT 58.206 33.333 0.00 0.00 0.00 2.83
3470 4197 4.583489 CCTGCTGCTTTGATTGGATTATCT 59.417 41.667 0.00 0.00 0.00 1.98
3471 4198 5.068723 CCTGCTGCTTTGATTGGATTATCTT 59.931 40.000 0.00 0.00 0.00 2.40
3472 4199 6.263842 CCTGCTGCTTTGATTGGATTATCTTA 59.736 38.462 0.00 0.00 0.00 2.10
3473 4200 7.039923 CCTGCTGCTTTGATTGGATTATCTTAT 60.040 37.037 0.00 0.00 0.00 1.73
3474 4201 8.241497 TGCTGCTTTGATTGGATTATCTTATT 57.759 30.769 0.00 0.00 0.00 1.40
3475 4202 9.353431 TGCTGCTTTGATTGGATTATCTTATTA 57.647 29.630 0.00 0.00 0.00 0.98
3545 4274 6.978343 ATTGGAATATTTCGTCTTTGTCGA 57.022 33.333 0.00 0.00 35.50 4.20
3683 4425 8.026607 GGTGCATTACTTAGTTGCTAAAATGAA 58.973 33.333 9.94 0.00 37.28 2.57
3780 4522 7.067859 GGCATCATAATATAACATCCACATGCT 59.932 37.037 0.00 0.00 33.74 3.79
3783 4525 8.255394 TCATAATATAACATCCACATGCTTCG 57.745 34.615 0.00 0.00 32.57 3.79
3784 4526 8.093927 TCATAATATAACATCCACATGCTTCGA 58.906 33.333 0.00 0.00 32.57 3.71
3785 4527 6.545504 AATATAACATCCACATGCTTCGAC 57.454 37.500 0.00 0.00 32.57 4.20
3786 4528 2.183478 AACATCCACATGCTTCGACA 57.817 45.000 0.00 0.00 32.57 4.35
3787 4529 1.730501 ACATCCACATGCTTCGACAG 58.269 50.000 0.00 0.00 32.57 3.51
3788 4530 1.002430 ACATCCACATGCTTCGACAGT 59.998 47.619 0.00 0.00 32.57 3.55
3791 4533 1.872952 TCCACATGCTTCGACAGTTTG 59.127 47.619 0.00 0.00 0.00 2.93
3792 4534 1.872952 CCACATGCTTCGACAGTTTGA 59.127 47.619 0.00 0.00 0.00 2.69
3793 4535 2.485426 CCACATGCTTCGACAGTTTGAT 59.515 45.455 0.00 0.00 0.00 2.57
3794 4536 3.425359 CCACATGCTTCGACAGTTTGATC 60.425 47.826 0.00 0.00 0.00 2.92
3795 4537 3.434641 CACATGCTTCGACAGTTTGATCT 59.565 43.478 0.00 0.00 0.00 2.75
3796 4538 3.681897 ACATGCTTCGACAGTTTGATCTC 59.318 43.478 0.00 0.00 0.00 2.75
3797 4539 3.385193 TGCTTCGACAGTTTGATCTCA 57.615 42.857 0.00 0.00 0.00 3.27
3798 4540 3.727726 TGCTTCGACAGTTTGATCTCAA 58.272 40.909 0.00 0.00 0.00 3.02
3799 4541 3.742882 TGCTTCGACAGTTTGATCTCAAG 59.257 43.478 0.00 0.00 37.15 3.02
3800 4542 3.990469 GCTTCGACAGTTTGATCTCAAGA 59.010 43.478 0.00 0.00 37.15 3.02
3801 4543 4.449068 GCTTCGACAGTTTGATCTCAAGAA 59.551 41.667 0.00 0.00 37.15 2.52
3802 4544 5.389307 GCTTCGACAGTTTGATCTCAAGAAG 60.389 44.000 10.59 10.59 37.15 2.85
3803 4545 4.560128 TCGACAGTTTGATCTCAAGAAGG 58.440 43.478 0.00 0.00 37.15 3.46
3804 4546 4.280929 TCGACAGTTTGATCTCAAGAAGGA 59.719 41.667 0.00 0.00 37.15 3.36
3805 4547 4.387256 CGACAGTTTGATCTCAAGAAGGAC 59.613 45.833 0.00 0.00 37.15 3.85
3806 4548 5.296151 ACAGTTTGATCTCAAGAAGGACA 57.704 39.130 0.00 0.00 37.15 4.02
3807 4549 5.874093 ACAGTTTGATCTCAAGAAGGACAT 58.126 37.500 0.00 0.00 37.15 3.06
3808 4550 5.704515 ACAGTTTGATCTCAAGAAGGACATG 59.295 40.000 0.00 0.00 37.15 3.21
3809 4551 5.704515 CAGTTTGATCTCAAGAAGGACATGT 59.295 40.000 0.00 0.00 37.15 3.21
3810 4552 6.206243 CAGTTTGATCTCAAGAAGGACATGTT 59.794 38.462 0.00 0.00 37.15 2.71
3811 4553 6.774656 AGTTTGATCTCAAGAAGGACATGTTT 59.225 34.615 0.00 0.00 37.15 2.83
3812 4554 7.286316 AGTTTGATCTCAAGAAGGACATGTTTT 59.714 33.333 0.00 0.00 37.15 2.43
3813 4555 6.564709 TGATCTCAAGAAGGACATGTTTTG 57.435 37.500 0.00 1.12 0.00 2.44
3814 4556 6.064060 TGATCTCAAGAAGGACATGTTTTGT 58.936 36.000 0.00 0.00 42.79 2.83
3815 4557 6.547141 TGATCTCAAGAAGGACATGTTTTGTT 59.453 34.615 0.00 0.16 39.18 2.83
3816 4558 6.135290 TCTCAAGAAGGACATGTTTTGTTG 57.865 37.500 19.31 19.31 39.18 3.33
3817 4559 4.681744 TCAAGAAGGACATGTTTTGTTGC 58.318 39.130 20.01 0.84 39.18 4.17
3818 4560 4.402155 TCAAGAAGGACATGTTTTGTTGCT 59.598 37.500 20.01 0.00 39.18 3.91
3819 4561 5.592282 TCAAGAAGGACATGTTTTGTTGCTA 59.408 36.000 20.01 8.81 39.18 3.49
3820 4562 5.438761 AGAAGGACATGTTTTGTTGCTAC 57.561 39.130 0.00 0.00 39.18 3.58
3821 4563 5.133221 AGAAGGACATGTTTTGTTGCTACT 58.867 37.500 0.00 0.00 39.18 2.57
3822 4564 4.836125 AGGACATGTTTTGTTGCTACTG 57.164 40.909 0.00 0.00 39.18 2.74
3823 4565 4.460263 AGGACATGTTTTGTTGCTACTGA 58.540 39.130 0.00 0.00 39.18 3.41
3824 4566 4.516698 AGGACATGTTTTGTTGCTACTGAG 59.483 41.667 0.00 0.00 39.18 3.35
3825 4567 4.275936 GGACATGTTTTGTTGCTACTGAGT 59.724 41.667 0.00 0.00 39.18 3.41
3826 4568 5.468746 GGACATGTTTTGTTGCTACTGAGTA 59.531 40.000 0.00 0.00 39.18 2.59
3827 4569 6.149474 GGACATGTTTTGTTGCTACTGAGTAT 59.851 38.462 0.00 0.00 39.18 2.12
3828 4570 7.308589 GGACATGTTTTGTTGCTACTGAGTATT 60.309 37.037 0.00 0.00 39.18 1.89
3829 4571 7.940850 ACATGTTTTGTTGCTACTGAGTATTT 58.059 30.769 0.00 0.00 33.74 1.40
3830 4572 8.413229 ACATGTTTTGTTGCTACTGAGTATTTT 58.587 29.630 0.00 0.00 33.74 1.82
3831 4573 8.693504 CATGTTTTGTTGCTACTGAGTATTTTG 58.306 33.333 0.00 0.00 0.00 2.44
3832 4574 7.199766 TGTTTTGTTGCTACTGAGTATTTTGG 58.800 34.615 0.00 0.00 0.00 3.28
3833 4575 7.067615 TGTTTTGTTGCTACTGAGTATTTTGGA 59.932 33.333 0.00 0.00 0.00 3.53
3834 4576 7.575414 TTTGTTGCTACTGAGTATTTTGGAA 57.425 32.000 0.00 0.00 0.00 3.53
3835 4577 7.575414 TTGTTGCTACTGAGTATTTTGGAAA 57.425 32.000 0.00 0.00 0.00 3.13
3836 4578 7.759489 TGTTGCTACTGAGTATTTTGGAAAT 57.241 32.000 0.00 0.00 0.00 2.17
3837 4579 8.177119 TGTTGCTACTGAGTATTTTGGAAATT 57.823 30.769 0.00 0.00 0.00 1.82
3838 4580 8.296713 TGTTGCTACTGAGTATTTTGGAAATTC 58.703 33.333 0.00 0.00 0.00 2.17
3839 4581 7.994425 TGCTACTGAGTATTTTGGAAATTCA 57.006 32.000 0.00 0.00 0.00 2.57
3840 4582 7.816640 TGCTACTGAGTATTTTGGAAATTCAC 58.183 34.615 0.00 0.00 0.00 3.18
3841 4583 7.094377 TGCTACTGAGTATTTTGGAAATTCACC 60.094 37.037 0.00 0.00 0.00 4.02
3842 4584 7.094377 GCTACTGAGTATTTTGGAAATTCACCA 60.094 37.037 0.00 0.94 35.47 4.17
3843 4585 7.219484 ACTGAGTATTTTGGAAATTCACCAG 57.781 36.000 0.00 0.00 38.70 4.00
3844 4586 7.004086 ACTGAGTATTTTGGAAATTCACCAGA 58.996 34.615 13.56 0.00 38.70 3.86
3845 4587 7.505585 ACTGAGTATTTTGGAAATTCACCAGAA 59.494 33.333 9.03 9.03 38.70 3.02
3846 4588 7.885297 TGAGTATTTTGGAAATTCACCAGAAG 58.115 34.615 11.25 0.00 38.70 2.85
3847 4589 7.039784 TGAGTATTTTGGAAATTCACCAGAAGG 60.040 37.037 11.25 0.00 38.70 3.46
3848 4590 7.010160 AGTATTTTGGAAATTCACCAGAAGGA 58.990 34.615 11.25 2.96 38.70 3.36
3849 4591 6.745794 ATTTTGGAAATTCACCAGAAGGAA 57.254 33.333 11.25 0.00 38.70 3.36
3850 4592 6.552445 TTTTGGAAATTCACCAGAAGGAAA 57.448 33.333 0.00 1.32 38.70 3.13
3851 4593 5.529581 TTGGAAATTCACCAGAAGGAAAC 57.470 39.130 0.00 0.00 38.70 2.78
3852 4594 4.541705 TGGAAATTCACCAGAAGGAAACA 58.458 39.130 0.00 0.00 37.14 2.83
3853 4595 5.147032 TGGAAATTCACCAGAAGGAAACAT 58.853 37.500 0.00 0.00 37.14 2.71
3854 4596 5.602145 TGGAAATTCACCAGAAGGAAACATT 59.398 36.000 0.00 0.00 37.14 2.71
3855 4597 6.099557 TGGAAATTCACCAGAAGGAAACATTT 59.900 34.615 0.00 0.00 37.14 2.32
3856 4598 7.288852 TGGAAATTCACCAGAAGGAAACATTTA 59.711 33.333 0.00 0.00 37.14 1.40
3857 4599 7.814587 GGAAATTCACCAGAAGGAAACATTTAG 59.185 37.037 0.00 0.00 37.14 1.85
3858 4600 6.840780 ATTCACCAGAAGGAAACATTTAGG 57.159 37.500 0.00 0.00 37.14 2.69
3859 4601 4.662278 TCACCAGAAGGAAACATTTAGGG 58.338 43.478 0.00 0.00 38.69 3.53
3860 4602 4.105697 TCACCAGAAGGAAACATTTAGGGT 59.894 41.667 0.00 0.00 38.69 4.34
3861 4603 4.459337 CACCAGAAGGAAACATTTAGGGTC 59.541 45.833 0.00 0.00 38.69 4.46
3862 4604 4.105697 ACCAGAAGGAAACATTTAGGGTCA 59.894 41.667 0.00 0.00 38.69 4.02
3863 4605 5.222337 ACCAGAAGGAAACATTTAGGGTCAT 60.222 40.000 0.00 0.00 38.69 3.06
3864 4606 5.716703 CCAGAAGGAAACATTTAGGGTCATT 59.283 40.000 0.00 0.00 36.89 2.57
3865 4607 6.127619 CCAGAAGGAAACATTTAGGGTCATTC 60.128 42.308 0.00 0.00 36.89 2.67
3866 4608 6.434028 CAGAAGGAAACATTTAGGGTCATTCA 59.566 38.462 0.00 0.00 32.84 2.57
3867 4609 7.123247 CAGAAGGAAACATTTAGGGTCATTCAT 59.877 37.037 0.00 0.00 32.84 2.57
3868 4610 7.675619 AGAAGGAAACATTTAGGGTCATTCATT 59.324 33.333 0.00 0.00 32.84 2.57
3869 4611 7.797121 AGGAAACATTTAGGGTCATTCATTT 57.203 32.000 0.00 0.00 0.00 2.32
3870 4612 8.206126 AGGAAACATTTAGGGTCATTCATTTT 57.794 30.769 0.00 0.00 0.00 1.82
3871 4613 8.314021 AGGAAACATTTAGGGTCATTCATTTTC 58.686 33.333 0.00 0.00 0.00 2.29
3872 4614 8.314021 GGAAACATTTAGGGTCATTCATTTTCT 58.686 33.333 0.00 0.00 0.00 2.52
3876 4618 9.479549 ACATTTAGGGTCATTCATTTTCTATGT 57.520 29.630 0.00 0.00 0.00 2.29
3903 4645 5.948742 TTTGGGGAGAAATCACTTTTTGT 57.051 34.783 0.00 0.00 0.00 2.83
3905 4647 4.285863 TGGGGAGAAATCACTTTTTGTGT 58.714 39.130 0.00 0.00 46.27 3.72
3906 4648 4.714308 TGGGGAGAAATCACTTTTTGTGTT 59.286 37.500 0.00 0.00 46.27 3.32
3907 4649 5.188751 TGGGGAGAAATCACTTTTTGTGTTT 59.811 36.000 0.00 0.00 46.27 2.83
3908 4650 5.523552 GGGGAGAAATCACTTTTTGTGTTTG 59.476 40.000 0.00 0.00 46.27 2.93
3909 4651 5.006649 GGGAGAAATCACTTTTTGTGTTTGC 59.993 40.000 0.00 0.00 46.27 3.68
3910 4652 5.276348 GGAGAAATCACTTTTTGTGTTTGCG 60.276 40.000 0.00 0.00 46.27 4.85
3911 4653 5.406649 AGAAATCACTTTTTGTGTTTGCGA 58.593 33.333 0.00 0.00 46.27 5.10
3912 4654 6.042143 AGAAATCACTTTTTGTGTTTGCGAT 58.958 32.000 0.00 0.00 46.27 4.58
3913 4655 6.534793 AGAAATCACTTTTTGTGTTTGCGATT 59.465 30.769 0.00 0.00 46.27 3.34
3914 4656 6.660887 AATCACTTTTTGTGTTTGCGATTT 57.339 29.167 0.00 0.00 46.27 2.17
3915 4657 5.694674 TCACTTTTTGTGTTTGCGATTTC 57.305 34.783 0.00 0.00 46.27 2.17
3916 4658 4.264145 TCACTTTTTGTGTTTGCGATTTCG 59.736 37.500 0.00 0.00 46.27 3.46
3917 4659 4.031201 CACTTTTTGTGTTTGCGATTTCGT 59.969 37.500 1.55 0.00 41.53 3.85
3918 4660 4.264380 ACTTTTTGTGTTTGCGATTTCGTC 59.736 37.500 1.55 0.00 42.22 4.20
3919 4661 8.827183 CACTTTTTGTGTTTGCGATTTCGTCG 62.827 42.308 1.55 0.00 45.75 5.12
3936 4678 0.752658 TCGGCATGACATACTCCTGG 59.247 55.000 0.00 0.00 0.00 4.45
3937 4679 0.465705 CGGCATGACATACTCCTGGT 59.534 55.000 0.00 0.00 0.00 4.00
3938 4680 1.134401 CGGCATGACATACTCCTGGTT 60.134 52.381 0.00 0.00 0.00 3.67
3939 4681 2.292267 GGCATGACATACTCCTGGTTG 58.708 52.381 0.00 0.00 0.00 3.77
3940 4682 2.356125 GGCATGACATACTCCTGGTTGT 60.356 50.000 0.00 0.00 0.00 3.32
3941 4683 2.679837 GCATGACATACTCCTGGTTGTG 59.320 50.000 0.00 0.00 0.00 3.33
3942 4684 3.869912 GCATGACATACTCCTGGTTGTGT 60.870 47.826 0.00 0.00 0.00 3.72
3943 4685 4.326826 CATGACATACTCCTGGTTGTGTT 58.673 43.478 0.00 0.00 0.00 3.32
3944 4686 4.002906 TGACATACTCCTGGTTGTGTTC 57.997 45.455 0.00 0.00 0.00 3.18
3945 4687 3.389656 TGACATACTCCTGGTTGTGTTCA 59.610 43.478 0.00 0.00 0.00 3.18
3946 4688 4.141597 TGACATACTCCTGGTTGTGTTCAA 60.142 41.667 0.00 0.00 0.00 2.69
3947 4689 4.985538 ACATACTCCTGGTTGTGTTCAAT 58.014 39.130 0.00 0.00 35.92 2.57
3948 4690 5.385198 ACATACTCCTGGTTGTGTTCAATT 58.615 37.500 0.00 0.00 35.92 2.32
3949 4691 5.833131 ACATACTCCTGGTTGTGTTCAATTT 59.167 36.000 0.00 0.00 35.92 1.82
3950 4692 6.323739 ACATACTCCTGGTTGTGTTCAATTTT 59.676 34.615 0.00 0.00 35.92 1.82
3951 4693 5.009854 ACTCCTGGTTGTGTTCAATTTTG 57.990 39.130 0.00 0.00 35.92 2.44
3952 4694 4.466015 ACTCCTGGTTGTGTTCAATTTTGT 59.534 37.500 0.00 0.00 35.92 2.83
3953 4695 5.046663 ACTCCTGGTTGTGTTCAATTTTGTT 60.047 36.000 0.00 0.00 35.92 2.83
3954 4696 5.799213 TCCTGGTTGTGTTCAATTTTGTTT 58.201 33.333 0.00 0.00 35.92 2.83
3955 4697 5.641209 TCCTGGTTGTGTTCAATTTTGTTTG 59.359 36.000 0.00 0.00 35.92 2.93
3956 4698 5.288543 TGGTTGTGTTCAATTTTGTTTGC 57.711 34.783 0.00 0.00 35.92 3.68
3957 4699 4.756642 TGGTTGTGTTCAATTTTGTTTGCA 59.243 33.333 0.00 0.00 35.92 4.08
3958 4700 5.239306 TGGTTGTGTTCAATTTTGTTTGCAA 59.761 32.000 0.00 0.00 35.92 4.08
3959 4701 6.072286 TGGTTGTGTTCAATTTTGTTTGCAAT 60.072 30.769 0.00 0.00 35.92 3.56
3960 4702 6.805760 GGTTGTGTTCAATTTTGTTTGCAATT 59.194 30.769 0.00 0.00 35.92 2.32
3961 4703 7.328005 GGTTGTGTTCAATTTTGTTTGCAATTT 59.672 29.630 0.00 0.00 35.92 1.82
3962 4704 8.697960 GTTGTGTTCAATTTTGTTTGCAATTTT 58.302 25.926 0.00 0.00 35.92 1.82
3963 4705 8.807667 TGTGTTCAATTTTGTTTGCAATTTTT 57.192 23.077 0.00 0.00 34.18 1.94
3964 4706 8.909671 TGTGTTCAATTTTGTTTGCAATTTTTC 58.090 25.926 0.00 0.00 34.18 2.29
3965 4707 9.127006 GTGTTCAATTTTGTTTGCAATTTTTCT 57.873 25.926 0.00 0.00 34.18 2.52
3974 4716 9.814899 TTTGTTTGCAATTTTTCTAGAGATTCA 57.185 25.926 0.00 0.00 34.18 2.57
3975 4717 9.985730 TTGTTTGCAATTTTTCTAGAGATTCAT 57.014 25.926 0.00 0.00 0.00 2.57
3976 4718 9.985730 TGTTTGCAATTTTTCTAGAGATTCATT 57.014 25.926 0.00 0.00 0.00 2.57
3978 4720 9.985730 TTTGCAATTTTTCTAGAGATTCATTGT 57.014 25.926 0.00 0.00 0.00 2.71
4015 4757 8.281212 TCTCAGATTTTTCTTATTTAGCACCC 57.719 34.615 0.00 0.00 0.00 4.61
4016 4758 7.065803 TCTCAGATTTTTCTTATTTAGCACCCG 59.934 37.037 0.00 0.00 0.00 5.28
4017 4759 5.743872 CAGATTTTTCTTATTTAGCACCCGC 59.256 40.000 0.00 0.00 38.99 6.13
4018 4760 3.750639 TTTTCTTATTTAGCACCCGCG 57.249 42.857 0.00 0.00 45.49 6.46
4019 4761 1.658994 TTCTTATTTAGCACCCGCGG 58.341 50.000 21.04 21.04 45.49 6.46
4020 4762 0.538118 TCTTATTTAGCACCCGCGGT 59.462 50.000 26.12 9.63 45.49 5.68
4031 4773 2.670251 CCGCGGTGGGCAGTAAAA 60.670 61.111 19.50 0.00 43.84 1.52
4032 4774 2.262303 CCGCGGTGGGCAGTAAAAA 61.262 57.895 19.50 0.00 43.84 1.94
4033 4775 1.209127 CGCGGTGGGCAGTAAAAAG 59.791 57.895 0.00 0.00 43.84 2.27
4034 4776 1.080772 GCGGTGGGCAGTAAAAAGC 60.081 57.895 0.00 0.00 42.87 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.099170 GCTGCAAGTCGCTGGCTG 62.099 66.667 7.57 7.89 43.06 4.85
1 2 4.326507 AGCTGCAAGTCGCTGGCT 62.327 61.111 1.02 0.00 42.48 4.75
3 4 3.123620 GGAGCTGCAAGTCGCTGG 61.124 66.667 2.49 0.00 43.06 4.85
5 6 1.002868 AATGGAGCTGCAAGTCGCT 60.003 52.632 13.45 0.00 43.06 4.93
6 7 1.136147 CAATGGAGCTGCAAGTCGC 59.864 57.895 13.45 0.00 42.89 5.19
7 8 1.136147 GCAATGGAGCTGCAAGTCG 59.864 57.895 13.45 1.96 39.69 4.18
8 9 2.260247 TGCAATGGAGCTGCAAGTC 58.740 52.632 13.45 4.50 46.47 3.01
9 10 4.506039 TGCAATGGAGCTGCAAGT 57.494 50.000 13.45 0.00 46.47 3.16
41 42 3.729906 CTGCAATCAAGCGCTCGGC 62.730 63.158 12.06 11.05 44.05 5.54
43 44 2.277120 GCTGCAATCAAGCGCTCG 60.277 61.111 12.06 0.00 37.31 5.03
44 45 1.062206 GAGCTGCAATCAAGCGCTC 59.938 57.895 12.06 6.16 45.78 5.03
45 46 2.404995 GGAGCTGCAATCAAGCGCT 61.405 57.895 2.64 2.64 43.34 5.92
46 47 2.101770 GGAGCTGCAATCAAGCGC 59.898 61.111 0.00 0.00 37.31 5.92
47 48 2.402388 CGGAGCTGCAATCAAGCG 59.598 61.111 5.91 0.00 37.31 4.68
74 75 2.680913 GCTGCAATGGAGCGTTCGT 61.681 57.895 11.65 0.00 37.31 3.85
78 79 2.437359 GGAGCTGCAATGGAGCGT 60.437 61.111 20.52 9.53 41.61 5.07
107 108 1.946650 GCTCCGATGCAGTACTCGC 60.947 63.158 1.89 9.52 33.63 5.03
119 120 2.271607 GATGCAGTCTCGTGCTCCGA 62.272 60.000 0.00 0.00 44.32 4.55
123 124 2.507992 GCGATGCAGTCTCGTGCT 60.508 61.111 9.70 0.00 44.32 4.40
124 125 2.810887 TGCGATGCAGTCTCGTGC 60.811 61.111 9.70 0.00 44.27 5.34
142 143 3.782244 CTGCAACCTCGTCTGCGC 61.782 66.667 0.00 0.00 41.63 6.09
144 145 3.782244 CGCTGCAACCTCGTCTGC 61.782 66.667 0.00 0.00 39.09 4.26
146 147 4.299547 TGCGCTGCAACCTCGTCT 62.300 61.111 9.73 0.00 34.76 4.18
170 171 4.557605 GCAATGCGTCCATGGCCG 62.558 66.667 11.62 11.62 41.66 6.13
175 176 3.142838 GGGCAGCAATGCGTCCAT 61.143 61.111 17.51 0.00 35.24 3.41
205 206 3.049674 CTGCAACGCATCCACGGT 61.050 61.111 0.00 0.00 38.13 4.83
208 209 3.254014 AACGCTGCAACGCATCCAC 62.254 57.895 9.87 0.00 38.13 4.02
210 211 2.502510 CAACGCTGCAACGCATCC 60.503 61.111 9.87 0.00 38.13 3.51
273 274 0.617820 GAACCAGGAGGCAGGAGGTA 60.618 60.000 0.00 0.00 39.06 3.08
275 276 2.674220 GGAACCAGGAGGCAGGAGG 61.674 68.421 0.00 0.00 39.06 4.30
276 277 2.993853 GGAACCAGGAGGCAGGAG 59.006 66.667 0.00 0.00 39.06 3.69
314 316 3.505773 ATGGAGGGGAGCCATGGC 61.506 66.667 30.12 30.12 44.21 4.40
329 331 3.349006 GGCGGCATAGCGTCCATG 61.349 66.667 3.07 0.00 38.18 3.66
334 336 4.402528 TTGTGGGCGGCATAGCGT 62.403 61.111 12.47 0.00 38.18 5.07
347 360 0.104487 TGCATTGTTGTGGCCTTGTG 59.896 50.000 3.32 0.00 0.00 3.33
348 361 0.390124 CTGCATTGTTGTGGCCTTGT 59.610 50.000 3.32 0.00 0.00 3.16
350 363 1.368579 GCTGCATTGTTGTGGCCTT 59.631 52.632 3.32 0.00 0.00 4.35
351 364 2.922950 CGCTGCATTGTTGTGGCCT 61.923 57.895 3.32 0.00 0.00 5.19
352 365 2.431260 CGCTGCATTGTTGTGGCC 60.431 61.111 0.00 0.00 0.00 5.36
354 367 1.210931 CTCCGCTGCATTGTTGTGG 59.789 57.895 0.00 0.00 0.00 4.17
355 368 1.210931 CCTCCGCTGCATTGTTGTG 59.789 57.895 0.00 0.00 0.00 3.33
356 369 0.957395 CTCCTCCGCTGCATTGTTGT 60.957 55.000 0.00 0.00 0.00 3.32
357 370 1.798735 CTCCTCCGCTGCATTGTTG 59.201 57.895 0.00 0.00 0.00 3.33
358 371 2.042831 GCTCCTCCGCTGCATTGTT 61.043 57.895 0.00 0.00 0.00 2.83
359 372 2.437359 GCTCCTCCGCTGCATTGT 60.437 61.111 0.00 0.00 0.00 2.71
360 373 2.124819 AGCTCCTCCGCTGCATTG 60.125 61.111 0.00 0.00 39.16 2.82
361 374 2.188994 GAGCTCCTCCGCTGCATT 59.811 61.111 0.87 0.00 41.08 3.56
398 411 2.591311 GGAAGTGTTTGACGCGCGA 61.591 57.895 39.36 13.15 33.01 5.87
401 414 0.511221 AATCGGAAGTGTTTGACGCG 59.489 50.000 3.53 3.53 33.01 6.01
402 415 2.571206 GAAATCGGAAGTGTTTGACGC 58.429 47.619 0.00 0.00 0.00 5.19
403 416 2.546368 TGGAAATCGGAAGTGTTTGACG 59.454 45.455 0.00 0.00 0.00 4.35
404 417 4.537015 CTTGGAAATCGGAAGTGTTTGAC 58.463 43.478 0.00 0.00 0.00 3.18
405 418 3.568007 CCTTGGAAATCGGAAGTGTTTGA 59.432 43.478 0.00 0.00 0.00 2.69
406 419 3.317993 ACCTTGGAAATCGGAAGTGTTTG 59.682 43.478 0.00 0.00 0.00 2.93
409 422 2.951229 ACCTTGGAAATCGGAAGTGT 57.049 45.000 0.00 0.00 0.00 3.55
411 424 4.529377 TGTAGTACCTTGGAAATCGGAAGT 59.471 41.667 0.00 0.00 0.00 3.01
417 430 4.935808 CACCACTGTAGTACCTTGGAAATC 59.064 45.833 19.43 0.00 0.00 2.17
418 431 4.806286 GCACCACTGTAGTACCTTGGAAAT 60.806 45.833 19.43 0.39 0.00 2.17
419 432 3.495453 GCACCACTGTAGTACCTTGGAAA 60.495 47.826 19.43 0.00 0.00 3.13
424 437 2.550208 GCAAGCACCACTGTAGTACCTT 60.550 50.000 0.00 0.00 0.00 3.50
427 440 1.439679 GGCAAGCACCACTGTAGTAC 58.560 55.000 0.00 0.00 0.00 2.73
429 442 1.301716 CGGCAAGCACCACTGTAGT 60.302 57.895 0.00 0.00 0.00 2.73
430 443 1.301716 ACGGCAAGCACCACTGTAG 60.302 57.895 0.00 0.00 0.00 2.74
432 445 2.901840 CACGGCAAGCACCACTGT 60.902 61.111 0.00 0.00 0.00 3.55
433 446 3.663176 CCACGGCAAGCACCACTG 61.663 66.667 0.00 0.00 0.00 3.66
438 459 1.026718 AGATTAGCCACGGCAAGCAC 61.027 55.000 11.35 0.00 44.88 4.40
443 464 1.264749 ACAGGAGATTAGCCACGGCA 61.265 55.000 11.35 0.00 44.88 5.69
445 466 0.179073 CCACAGGAGATTAGCCACGG 60.179 60.000 0.00 0.00 0.00 4.94
447 468 0.543749 AGCCACAGGAGATTAGCCAC 59.456 55.000 0.00 0.00 0.00 5.01
459 480 0.803117 CTTGCATCTCACAGCCACAG 59.197 55.000 0.00 0.00 0.00 3.66
462 483 1.001764 CCCTTGCATCTCACAGCCA 60.002 57.895 0.00 0.00 0.00 4.75
463 484 1.751927 CCCCTTGCATCTCACAGCC 60.752 63.158 0.00 0.00 0.00 4.85
465 486 1.280133 TCTTCCCCTTGCATCTCACAG 59.720 52.381 0.00 0.00 0.00 3.66
468 489 2.644299 TCTTTCTTCCCCTTGCATCTCA 59.356 45.455 0.00 0.00 0.00 3.27
469 490 3.356529 TCTTTCTTCCCCTTGCATCTC 57.643 47.619 0.00 0.00 0.00 2.75
470 491 3.331889 TCTTCTTTCTTCCCCTTGCATCT 59.668 43.478 0.00 0.00 0.00 2.90
475 496 5.830457 ACTTCTTTCTTCTTTCTTCCCCTTG 59.170 40.000 0.00 0.00 0.00 3.61
479 500 6.017523 CACTCACTTCTTTCTTCTTTCTTCCC 60.018 42.308 0.00 0.00 0.00 3.97
491 512 2.900546 TCCTCCTCCACTCACTTCTTTC 59.099 50.000 0.00 0.00 0.00 2.62
498 520 0.534873 GAAGCTCCTCCTCCACTCAC 59.465 60.000 0.00 0.00 0.00 3.51
511 533 7.878036 ACCTTATCTTATCTCTAACGAAGCTC 58.122 38.462 0.00 0.00 0.00 4.09
512 534 7.826918 ACCTTATCTTATCTCTAACGAAGCT 57.173 36.000 0.00 0.00 0.00 3.74
515 537 7.201974 CCCCAACCTTATCTTATCTCTAACGAA 60.202 40.741 0.00 0.00 0.00 3.85
517 539 6.456501 CCCCAACCTTATCTTATCTCTAACG 58.543 44.000 0.00 0.00 0.00 3.18
518 540 6.183361 TGCCCCAACCTTATCTTATCTCTAAC 60.183 42.308 0.00 0.00 0.00 2.34
527 549 1.852633 GCTTGCCCCAACCTTATCTT 58.147 50.000 0.00 0.00 0.00 2.40
556 579 4.680237 CCACGTGCCCGCTTCAGA 62.680 66.667 10.91 0.00 37.70 3.27
575 603 0.460459 GTAAGCCTCCTTCTCCACGC 60.460 60.000 0.00 0.00 32.47 5.34
579 607 1.765230 TCTCGTAAGCCTCCTTCTCC 58.235 55.000 0.00 0.00 32.47 3.71
595 623 5.178797 TCATCCGGTTGATCTTTCTTTCTC 58.821 41.667 11.25 0.00 0.00 2.87
599 627 6.840780 AAAATCATCCGGTTGATCTTTCTT 57.159 33.333 24.69 14.04 35.29 2.52
606 634 5.890424 ACGTTAAAAATCATCCGGTTGAT 57.110 34.783 20.16 20.16 37.96 2.57
608 636 6.129035 GGAAAACGTTAAAAATCATCCGGTTG 60.129 38.462 0.00 6.15 0.00 3.77
610 638 5.009811 TGGAAAACGTTAAAAATCATCCGGT 59.990 36.000 0.00 0.00 0.00 5.28
611 639 5.462405 TGGAAAACGTTAAAAATCATCCGG 58.538 37.500 0.00 0.00 0.00 5.14
613 641 7.277917 CGTTTGGAAAACGTTAAAAATCATCC 58.722 34.615 15.21 0.77 38.69 3.51
621 649 6.188400 AGTTACCGTTTGGAAAACGTTAAA 57.812 33.333 20.11 10.65 41.64 1.52
626 654 4.084380 GGAGTAGTTACCGTTTGGAAAACG 60.084 45.833 16.22 16.22 42.74 3.60
635 663 2.564504 GGGTTCTGGAGTAGTTACCGTT 59.435 50.000 0.00 0.00 34.87 4.44
636 664 2.174360 GGGTTCTGGAGTAGTTACCGT 58.826 52.381 0.00 0.00 34.87 4.83
637 665 2.173519 TGGGTTCTGGAGTAGTTACCG 58.826 52.381 0.00 0.00 34.87 4.02
638 666 4.628963 TTTGGGTTCTGGAGTAGTTACC 57.371 45.455 0.00 0.00 33.96 2.85
639 667 5.001874 CCTTTTGGGTTCTGGAGTAGTTAC 58.998 45.833 0.00 0.00 35.46 2.50
640 668 4.506095 GCCTTTTGGGTTCTGGAGTAGTTA 60.506 45.833 0.00 0.00 40.82 2.24
641 669 3.750922 GCCTTTTGGGTTCTGGAGTAGTT 60.751 47.826 0.00 0.00 40.82 2.24
642 670 2.224793 GCCTTTTGGGTTCTGGAGTAGT 60.225 50.000 0.00 0.00 40.82 2.73
643 671 2.437413 GCCTTTTGGGTTCTGGAGTAG 58.563 52.381 0.00 0.00 40.82 2.57
651 679 2.050442 CGTGCGCCTTTTGGGTTC 60.050 61.111 4.18 0.00 40.82 3.62
790 818 2.694760 CCTTCTTCCAAGCCTGCGC 61.695 63.158 0.00 0.00 0.00 6.09
803 831 2.435693 CGCGATCCCTTCCCCTTCT 61.436 63.158 0.00 0.00 0.00 2.85
908 936 1.706287 GATCGCGGCTGAGGTTTTCC 61.706 60.000 6.13 0.00 41.05 3.13
910 938 2.100631 CGATCGCGGCTGAGGTTTT 61.101 57.895 6.13 0.00 0.00 2.43
953 981 3.922893 GATCTGCAGCAGCGTCGC 61.923 66.667 18.43 9.80 46.23 5.19
989 1017 2.833582 TCGACATCTCCTCGGCCC 60.834 66.667 0.00 0.00 0.00 5.80
1126 1154 6.183360 GCAATCTAAATAAGAACACAGGGGAC 60.183 42.308 0.00 0.00 37.89 4.46
1136 1164 5.989777 GCGACTAGGGCAATCTAAATAAGAA 59.010 40.000 3.44 0.00 37.89 2.52
1144 1172 0.666913 GTCGCGACTAGGGCAATCTA 59.333 55.000 31.12 0.00 0.00 1.98
1196 1224 4.169508 CGATTCCGCCTTCTATATCACAG 58.830 47.826 0.00 0.00 0.00 3.66
1219 1247 1.200483 CGATCCCACTCAAATCGACG 58.800 55.000 0.00 0.00 43.73 5.12
1252 1280 6.073440 CGAACGAATTTCTAGGAAAACCAAGA 60.073 38.462 0.00 0.00 31.20 3.02
1254 1282 5.561339 GCGAACGAATTTCTAGGAAAACCAA 60.561 40.000 0.00 0.00 31.20 3.67
1255 1283 4.083696 GCGAACGAATTTCTAGGAAAACCA 60.084 41.667 0.00 0.00 31.20 3.67
1256 1284 4.400845 GCGAACGAATTTCTAGGAAAACC 58.599 43.478 0.00 0.00 31.20 3.27
1260 1288 2.264813 CCGCGAACGAATTTCTAGGAA 58.735 47.619 8.23 0.00 43.93 3.36
1277 1305 1.781429 CGATAGCGCATATCATACCGC 59.219 52.381 11.47 3.88 46.14 5.68
1324 1352 7.023575 GGCTTGTCAATTCACTACATGTAAAG 58.976 38.462 7.06 0.11 0.00 1.85
1326 1354 6.149308 CAGGCTTGTCAATTCACTACATGTAA 59.851 38.462 7.06 0.00 0.00 2.41
1338 1366 1.200716 CATCACGCAGGCTTGTCAATT 59.799 47.619 0.00 0.00 0.00 2.32
1372 1400 2.751166 AACTAGTGCTAGTGGTGCAG 57.249 50.000 12.07 0.00 44.96 4.41
1375 1403 6.238211 GCATCAAATAACTAGTGCTAGTGGTG 60.238 42.308 12.07 7.43 44.96 4.17
1377 1405 6.018425 CAGCATCAAATAACTAGTGCTAGTGG 60.018 42.308 12.07 2.12 44.96 4.00
1392 1434 6.349243 TCCAACAGAAATTCAGCATCAAAT 57.651 33.333 0.00 0.00 0.00 2.32
1426 1468 0.034089 ATCTTGCTACTGTTGCCCCC 60.034 55.000 11.51 0.00 0.00 5.40
1490 1532 4.421948 CCGGTACAGAAGACACATCTTAC 58.578 47.826 0.00 0.00 45.60 2.34
1508 1550 1.686355 TTGACTGACAAAATGCCGGT 58.314 45.000 1.90 0.00 35.39 5.28
1522 1564 6.459161 GGGACAACGTTAACTGAAAATTGACT 60.459 38.462 0.00 0.00 0.00 3.41
1547 1589 7.860872 GGTAACTACCTGACAAAAGAACAAATG 59.139 37.037 0.00 0.00 43.10 2.32
1598 1640 0.940126 CACAAGGAGCACACTGACAC 59.060 55.000 0.00 0.00 0.00 3.67
1626 1668 8.484641 TTGCATAACAAAGTTTCATGAACAAA 57.515 26.923 7.89 0.00 35.44 2.83
1636 1678 5.359576 TCACTGTCCTTGCATAACAAAGTTT 59.640 36.000 0.00 0.00 37.96 2.66
1674 1716 9.480053 ACAATTGTCCATATGAAACAAGAAAAG 57.520 29.630 20.84 13.84 36.44 2.27
1681 1723 6.658816 AGCACTACAATTGTCCATATGAAACA 59.341 34.615 15.85 5.57 0.00 2.83
1716 1758 6.661805 ACCCAATCACCTACGTTTGATAAAAT 59.338 34.615 0.00 0.00 31.99 1.82
1727 2100 0.902531 ACTGGACCCAATCACCTACG 59.097 55.000 0.00 0.00 0.00 3.51
1729 2102 3.009033 CAGAAACTGGACCCAATCACCTA 59.991 47.826 0.00 0.00 0.00 3.08
1797 2235 6.147821 CCACTTCACAACTGTAGATTACCAAG 59.852 42.308 0.00 0.00 0.00 3.61
1822 2260 0.324943 TAAGTGGTCCTTCTGGCAGC 59.675 55.000 10.34 0.00 34.46 5.25
1844 2282 3.498082 GTTTGCCTAACTATTTGGTGCG 58.502 45.455 0.00 0.00 33.79 5.34
1872 2312 6.398918 ACATACAGAATAAAGACGCTTCAGT 58.601 36.000 0.00 0.00 0.00 3.41
1873 2313 6.531594 TGACATACAGAATAAAGACGCTTCAG 59.468 38.462 0.00 0.00 0.00 3.02
1878 2318 8.480853 GTCTATTGACATACAGAATAAAGACGC 58.519 37.037 2.19 0.00 42.48 5.19
1880 2320 8.969267 CGGTCTATTGACATACAGAATAAAGAC 58.031 37.037 9.51 0.00 44.61 3.01
1905 2352 1.086067 CACTACCAGTGCCAGCATCG 61.086 60.000 0.00 0.00 39.62 3.84
1961 2408 4.559153 AGCAAGCATATTGTCAAACAACC 58.441 39.130 0.00 0.00 41.40 3.77
2057 2526 8.212995 AGTTTGGATTCAATCACCTTCATTTTT 58.787 29.630 0.00 0.00 32.28 1.94
2058 2527 7.658575 CAGTTTGGATTCAATCACCTTCATTTT 59.341 33.333 0.00 0.00 32.28 1.82
2140 2693 0.035343 GTTCCCTTCTGGTAGCCACC 60.035 60.000 0.00 0.00 46.00 4.61
2210 2764 8.836268 AAAATATGTCTACAAACTGGTAACGA 57.164 30.769 0.00 0.00 42.51 3.85
2252 2926 7.951530 CCATTATATGGTTTTGATGGCTTTC 57.048 36.000 0.00 0.00 45.54 2.62
2269 2943 7.185565 TCTTCAAATCAAACCACCCCATTATA 58.814 34.615 0.00 0.00 0.00 0.98
2310 2985 8.085296 CCAAAATAAACAAATACACTACAGGCA 58.915 33.333 0.00 0.00 0.00 4.75
2311 2986 7.544217 CCCAAAATAAACAAATACACTACAGGC 59.456 37.037 0.00 0.00 0.00 4.85
2312 2987 8.032451 CCCCAAAATAAACAAATACACTACAGG 58.968 37.037 0.00 0.00 0.00 4.00
2313 2988 8.581578 ACCCCAAAATAAACAAATACACTACAG 58.418 33.333 0.00 0.00 0.00 2.74
2363 3072 6.259550 ACCAAGTATGAAACAAGAATCTGC 57.740 37.500 0.00 0.00 0.00 4.26
2372 3081 9.522804 GTTTAACATGAAACCAAGTATGAAACA 57.477 29.630 0.00 0.00 33.93 2.83
2417 3126 7.618117 TGAGAACATGTTCATAGAGGGTAGTAA 59.382 37.037 33.92 5.35 41.84 2.24
2422 3131 5.965033 ATGAGAACATGTTCATAGAGGGT 57.035 39.130 33.92 15.44 41.84 4.34
2424 3133 8.899427 ATGTTATGAGAACATGTTCATAGAGG 57.101 34.615 33.92 0.00 41.84 3.69
2440 3152 9.212641 TCTCTGAACTTTGAAAGATGTTATGAG 57.787 33.333 12.53 9.08 0.00 2.90
2458 3170 5.646577 TTAGAGCACTACCTTCTCTGAAC 57.353 43.478 0.00 0.00 37.70 3.18
2465 3177 5.178797 TCAAGCAATTAGAGCACTACCTTC 58.821 41.667 0.00 0.00 0.00 3.46
2564 3276 4.025360 TCCCGCAACCTTAAGTCATACTA 58.975 43.478 0.97 0.00 0.00 1.82
2590 3302 6.484288 TGAAATCAACAACCATCTACAGGAT 58.516 36.000 0.00 0.00 34.51 3.24
2667 3391 4.229876 GCCAATGAAACAGAGTAAGCAAC 58.770 43.478 0.00 0.00 0.00 4.17
2670 3394 2.729156 GCGCCAATGAAACAGAGTAAGC 60.729 50.000 0.00 0.00 0.00 3.09
2867 3592 2.119495 GTGACCCCACATACCTCATCT 58.881 52.381 0.00 0.00 42.72 2.90
3009 3735 3.672295 CTTGGAGGGAGACGGCAGC 62.672 68.421 0.00 0.00 0.00 5.25
3010 3736 2.581354 CTTGGAGGGAGACGGCAG 59.419 66.667 0.00 0.00 0.00 4.85
3011 3737 3.706373 GCTTGGAGGGAGACGGCA 61.706 66.667 0.00 0.00 0.00 5.69
3016 3742 1.758514 CTAGGCGCTTGGAGGGAGA 60.759 63.158 7.64 0.00 0.00 3.71
3045 3771 0.784778 GACAACGAGCAGGACTTTCG 59.215 55.000 0.00 2.54 40.02 3.46
3171 3897 2.502213 AACGGCACTAAACAAAAGCC 57.498 45.000 0.00 0.00 41.86 4.35
3280 4006 5.305585 AGCTTCGAGGAACTAAAACAATCA 58.694 37.500 0.00 0.00 41.55 2.57
3481 4208 7.005709 ACAACAACAGGCTTATACTAAGAGT 57.994 36.000 0.00 0.00 0.00 3.24
3499 4226 1.540797 CCCGTTCCCGTCTAACAACAA 60.541 52.381 0.00 0.00 0.00 2.83
3545 4274 2.069273 GCACGCTACAAGAAGACATGT 58.931 47.619 0.00 0.00 0.00 3.21
3583 4319 0.892358 TAGCTCACGGAGTCACGGTT 60.892 55.000 0.00 0.00 41.61 4.44
3586 4322 0.733150 TGATAGCTCACGGAGTCACG 59.267 55.000 0.00 0.00 41.61 4.35
3640 4382 9.555727 GTAATGCACCTGAGGAAAATAATACTA 57.444 33.333 4.99 0.00 0.00 1.82
3642 4384 8.451908 AGTAATGCACCTGAGGAAAATAATAC 57.548 34.615 4.99 0.00 0.00 1.89
3644 4386 7.961326 AAGTAATGCACCTGAGGAAAATAAT 57.039 32.000 4.99 0.00 0.00 1.28
3647 4389 6.485171 ACTAAGTAATGCACCTGAGGAAAAT 58.515 36.000 4.99 0.00 0.00 1.82
3688 4430 7.721399 AGCTGCTAGTGCCTAAAACATATTATT 59.279 33.333 0.00 0.00 38.71 1.40
3689 4431 7.227156 AGCTGCTAGTGCCTAAAACATATTAT 58.773 34.615 0.00 0.00 38.71 1.28
3690 4432 6.591935 AGCTGCTAGTGCCTAAAACATATTA 58.408 36.000 0.00 0.00 38.71 0.98
3780 4522 4.991056 CCTTCTTGAGATCAAACTGTCGAA 59.009 41.667 0.00 0.00 35.15 3.71
3783 4525 5.300752 TGTCCTTCTTGAGATCAAACTGTC 58.699 41.667 0.00 0.00 35.15 3.51
3784 4526 5.296151 TGTCCTTCTTGAGATCAAACTGT 57.704 39.130 0.00 0.00 35.15 3.55
3785 4527 5.704515 ACATGTCCTTCTTGAGATCAAACTG 59.295 40.000 0.00 0.00 35.15 3.16
3786 4528 5.874093 ACATGTCCTTCTTGAGATCAAACT 58.126 37.500 0.00 0.00 35.15 2.66
3787 4529 6.566197 AACATGTCCTTCTTGAGATCAAAC 57.434 37.500 0.00 0.00 35.15 2.93
3788 4530 7.068593 ACAAAACATGTCCTTCTTGAGATCAAA 59.931 33.333 0.00 0.00 37.96 2.69
3791 4533 6.566197 ACAAAACATGTCCTTCTTGAGATC 57.434 37.500 0.00 0.00 37.96 2.75
3792 4534 6.736794 GCAACAAAACATGTCCTTCTTGAGAT 60.737 38.462 0.00 0.00 42.99 2.75
3793 4535 5.450412 GCAACAAAACATGTCCTTCTTGAGA 60.450 40.000 0.00 0.00 42.99 3.27
3794 4536 4.741676 GCAACAAAACATGTCCTTCTTGAG 59.258 41.667 0.00 0.00 42.99 3.02
3795 4537 4.402155 AGCAACAAAACATGTCCTTCTTGA 59.598 37.500 0.00 0.00 42.99 3.02
3796 4538 4.685924 AGCAACAAAACATGTCCTTCTTG 58.314 39.130 0.00 1.83 42.99 3.02
3797 4539 5.594317 AGTAGCAACAAAACATGTCCTTCTT 59.406 36.000 0.00 0.00 42.99 2.52
3798 4540 5.009010 CAGTAGCAACAAAACATGTCCTTCT 59.991 40.000 0.00 0.00 42.99 2.85
3799 4541 5.008613 TCAGTAGCAACAAAACATGTCCTTC 59.991 40.000 0.00 0.00 42.99 3.46
3800 4542 4.887071 TCAGTAGCAACAAAACATGTCCTT 59.113 37.500 0.00 0.00 42.99 3.36
3801 4543 4.460263 TCAGTAGCAACAAAACATGTCCT 58.540 39.130 0.00 0.00 42.99 3.85
3802 4544 4.275936 ACTCAGTAGCAACAAAACATGTCC 59.724 41.667 0.00 0.00 42.99 4.02
3803 4545 5.424121 ACTCAGTAGCAACAAAACATGTC 57.576 39.130 0.00 0.00 42.99 3.06
3804 4546 7.510549 AATACTCAGTAGCAACAAAACATGT 57.489 32.000 0.00 0.00 46.82 3.21
3805 4547 8.693504 CAAAATACTCAGTAGCAACAAAACATG 58.306 33.333 0.00 0.00 0.00 3.21
3806 4548 7.867403 CCAAAATACTCAGTAGCAACAAAACAT 59.133 33.333 0.00 0.00 0.00 2.71
3807 4549 7.067615 TCCAAAATACTCAGTAGCAACAAAACA 59.932 33.333 0.00 0.00 0.00 2.83
3808 4550 7.422399 TCCAAAATACTCAGTAGCAACAAAAC 58.578 34.615 0.00 0.00 0.00 2.43
3809 4551 7.575414 TCCAAAATACTCAGTAGCAACAAAA 57.425 32.000 0.00 0.00 0.00 2.44
3810 4552 7.575414 TTCCAAAATACTCAGTAGCAACAAA 57.425 32.000 0.00 0.00 0.00 2.83
3811 4553 7.575414 TTTCCAAAATACTCAGTAGCAACAA 57.425 32.000 0.00 0.00 0.00 2.83
3812 4554 7.759489 ATTTCCAAAATACTCAGTAGCAACA 57.241 32.000 0.00 0.00 0.00 3.33
3813 4555 8.296713 TGAATTTCCAAAATACTCAGTAGCAAC 58.703 33.333 0.00 0.00 0.00 4.17
3814 4556 8.296713 GTGAATTTCCAAAATACTCAGTAGCAA 58.703 33.333 0.00 0.00 0.00 3.91
3815 4557 7.094377 GGTGAATTTCCAAAATACTCAGTAGCA 60.094 37.037 0.00 0.00 0.00 3.49
3816 4558 7.094377 TGGTGAATTTCCAAAATACTCAGTAGC 60.094 37.037 0.00 0.00 31.50 3.58
3817 4559 8.335532 TGGTGAATTTCCAAAATACTCAGTAG 57.664 34.615 0.00 0.00 31.50 2.57
3818 4560 8.160765 TCTGGTGAATTTCCAAAATACTCAGTA 58.839 33.333 0.00 0.00 34.35 2.74
3819 4561 7.004086 TCTGGTGAATTTCCAAAATACTCAGT 58.996 34.615 5.14 0.00 34.35 3.41
3820 4562 7.452880 TCTGGTGAATTTCCAAAATACTCAG 57.547 36.000 5.14 0.00 34.35 3.35
3821 4563 7.039784 CCTTCTGGTGAATTTCCAAAATACTCA 60.040 37.037 5.14 0.00 34.35 3.41
3822 4564 7.176690 TCCTTCTGGTGAATTTCCAAAATACTC 59.823 37.037 5.14 0.00 34.35 2.59
3823 4565 7.010160 TCCTTCTGGTGAATTTCCAAAATACT 58.990 34.615 5.14 0.00 34.35 2.12
3824 4566 7.227049 TCCTTCTGGTGAATTTCCAAAATAC 57.773 36.000 5.14 0.00 34.35 1.89
3825 4567 7.847711 TTCCTTCTGGTGAATTTCCAAAATA 57.152 32.000 5.14 0.00 34.35 1.40
3826 4568 6.745794 TTCCTTCTGGTGAATTTCCAAAAT 57.254 33.333 5.14 0.00 34.35 1.82
3827 4569 6.070538 TGTTTCCTTCTGGTGAATTTCCAAAA 60.071 34.615 5.14 0.00 34.35 2.44
3828 4570 5.423610 TGTTTCCTTCTGGTGAATTTCCAAA 59.576 36.000 5.14 3.15 34.35 3.28
3829 4571 4.959210 TGTTTCCTTCTGGTGAATTTCCAA 59.041 37.500 5.14 0.00 34.35 3.53
3830 4572 4.541705 TGTTTCCTTCTGGTGAATTTCCA 58.458 39.130 3.83 3.83 34.23 3.53
3831 4573 5.728637 ATGTTTCCTTCTGGTGAATTTCC 57.271 39.130 0.00 0.00 34.23 3.13
3832 4574 7.814587 CCTAAATGTTTCCTTCTGGTGAATTTC 59.185 37.037 0.00 0.00 34.23 2.17
3833 4575 7.256296 CCCTAAATGTTTCCTTCTGGTGAATTT 60.256 37.037 0.00 0.00 34.23 1.82
3834 4576 6.211384 CCCTAAATGTTTCCTTCTGGTGAATT 59.789 38.462 0.00 0.00 34.23 2.17
3835 4577 5.716703 CCCTAAATGTTTCCTTCTGGTGAAT 59.283 40.000 0.00 0.00 34.23 2.57
3836 4578 5.076873 CCCTAAATGTTTCCTTCTGGTGAA 58.923 41.667 0.00 0.00 34.23 3.18
3837 4579 4.105697 ACCCTAAATGTTTCCTTCTGGTGA 59.894 41.667 0.00 0.00 34.23 4.02
3838 4580 4.407365 ACCCTAAATGTTTCCTTCTGGTG 58.593 43.478 0.00 0.00 34.23 4.17
3839 4581 4.105697 TGACCCTAAATGTTTCCTTCTGGT 59.894 41.667 0.00 0.00 34.23 4.00
3840 4582 4.662278 TGACCCTAAATGTTTCCTTCTGG 58.338 43.478 0.00 0.00 0.00 3.86
3841 4583 6.434028 TGAATGACCCTAAATGTTTCCTTCTG 59.566 38.462 0.00 0.00 0.00 3.02
3842 4584 6.552008 TGAATGACCCTAAATGTTTCCTTCT 58.448 36.000 0.00 0.00 0.00 2.85
3843 4585 6.834168 TGAATGACCCTAAATGTTTCCTTC 57.166 37.500 0.00 0.00 0.00 3.46
3844 4586 7.797121 AATGAATGACCCTAAATGTTTCCTT 57.203 32.000 0.00 0.00 0.00 3.36
3845 4587 7.797121 AAATGAATGACCCTAAATGTTTCCT 57.203 32.000 0.00 0.00 0.00 3.36
3846 4588 8.314021 AGAAAATGAATGACCCTAAATGTTTCC 58.686 33.333 0.00 0.00 0.00 3.13
3850 4592 9.479549 ACATAGAAAATGAATGACCCTAAATGT 57.520 29.630 0.00 0.00 0.00 2.71
3879 4621 6.716284 ACAAAAAGTGATTTCTCCCCAAAAA 58.284 32.000 0.00 0.00 0.00 1.94
3880 4622 6.306643 ACAAAAAGTGATTTCTCCCCAAAA 57.693 33.333 0.00 0.00 0.00 2.44
3881 4623 5.948742 ACAAAAAGTGATTTCTCCCCAAA 57.051 34.783 0.00 0.00 0.00 3.28
3891 4633 8.782066 ACGAAATCGCAAACACAAAAAGTGATT 61.782 33.333 2.15 0.00 46.86 2.57
3892 4634 7.385940 ACGAAATCGCAAACACAAAAAGTGAT 61.386 34.615 2.15 0.00 46.86 3.06
3893 4635 6.126433 ACGAAATCGCAAACACAAAAAGTGA 61.126 36.000 2.15 0.00 46.86 3.41
3895 4637 4.170256 ACGAAATCGCAAACACAAAAAGT 58.830 34.783 2.15 0.00 44.43 2.66
3896 4638 4.600801 CGACGAAATCGCAAACACAAAAAG 60.601 41.667 2.15 0.00 45.52 2.27
3897 4639 3.238570 CGACGAAATCGCAAACACAAAAA 59.761 39.130 2.15 0.00 45.52 1.94
3898 4640 2.778928 CGACGAAATCGCAAACACAAAA 59.221 40.909 2.15 0.00 45.52 2.44
3899 4641 2.367772 CGACGAAATCGCAAACACAAA 58.632 42.857 2.15 0.00 45.52 2.83
3900 4642 2.011932 CGACGAAATCGCAAACACAA 57.988 45.000 2.15 0.00 45.52 3.33
3901 4643 3.719588 CGACGAAATCGCAAACACA 57.280 47.368 2.15 0.00 45.52 3.72
3916 4658 1.539065 CCAGGAGTATGTCATGCCGAC 60.539 57.143 0.00 0.00 45.61 4.79
3917 4659 0.752658 CCAGGAGTATGTCATGCCGA 59.247 55.000 0.00 0.00 35.52 5.54
3918 4660 0.465705 ACCAGGAGTATGTCATGCCG 59.534 55.000 0.00 0.00 35.52 5.69
3919 4661 2.292267 CAACCAGGAGTATGTCATGCC 58.708 52.381 0.00 0.00 35.52 4.40
3920 4662 2.679837 CACAACCAGGAGTATGTCATGC 59.320 50.000 0.00 0.00 35.52 4.06
3921 4663 3.942829 ACACAACCAGGAGTATGTCATG 58.057 45.455 0.00 0.00 36.68 3.07
3922 4664 4.041567 TGAACACAACCAGGAGTATGTCAT 59.958 41.667 0.00 0.00 0.00 3.06
3923 4665 3.389656 TGAACACAACCAGGAGTATGTCA 59.610 43.478 0.00 0.00 0.00 3.58
3924 4666 4.002906 TGAACACAACCAGGAGTATGTC 57.997 45.455 0.00 0.00 0.00 3.06
3925 4667 4.431416 TTGAACACAACCAGGAGTATGT 57.569 40.909 0.00 0.00 0.00 2.29
3926 4668 5.964958 AATTGAACACAACCAGGAGTATG 57.035 39.130 0.00 0.00 0.00 2.39
3927 4669 6.323739 ACAAAATTGAACACAACCAGGAGTAT 59.676 34.615 0.00 0.00 0.00 2.12
3928 4670 5.654650 ACAAAATTGAACACAACCAGGAGTA 59.345 36.000 0.00 0.00 0.00 2.59
3929 4671 4.466015 ACAAAATTGAACACAACCAGGAGT 59.534 37.500 0.00 0.00 0.00 3.85
3930 4672 5.009854 ACAAAATTGAACACAACCAGGAG 57.990 39.130 0.00 0.00 0.00 3.69
3931 4673 5.413309 AACAAAATTGAACACAACCAGGA 57.587 34.783 0.00 0.00 0.00 3.86
3932 4674 5.673318 GCAAACAAAATTGAACACAACCAGG 60.673 40.000 0.00 0.00 31.84 4.45
3933 4675 5.106791 TGCAAACAAAATTGAACACAACCAG 60.107 36.000 0.00 0.00 31.84 4.00
3934 4676 4.756642 TGCAAACAAAATTGAACACAACCA 59.243 33.333 0.00 0.00 31.84 3.67
3935 4677 5.288543 TGCAAACAAAATTGAACACAACC 57.711 34.783 0.00 0.00 31.84 3.77
3936 4678 7.793907 AATTGCAAACAAAATTGAACACAAC 57.206 28.000 1.71 0.00 39.77 3.32
3937 4679 8.807667 AAAATTGCAAACAAAATTGAACACAA 57.192 23.077 1.71 0.00 39.77 3.33
3938 4680 8.807667 AAAAATTGCAAACAAAATTGAACACA 57.192 23.077 1.71 0.00 39.77 3.72
3939 4681 9.127006 AGAAAAATTGCAAACAAAATTGAACAC 57.873 25.926 1.71 0.00 39.77 3.32
3948 4690 9.814899 TGAATCTCTAGAAAAATTGCAAACAAA 57.185 25.926 1.71 0.00 39.77 2.83
3949 4691 9.985730 ATGAATCTCTAGAAAAATTGCAAACAA 57.014 25.926 1.71 0.00 40.87 2.83
3950 4692 9.985730 AATGAATCTCTAGAAAAATTGCAAACA 57.014 25.926 1.71 0.00 0.00 2.83
3952 4694 9.985730 ACAATGAATCTCTAGAAAAATTGCAAA 57.014 25.926 1.71 0.00 30.60 3.68
3989 4731 8.907885 GGGTGCTAAATAAGAAAAATCTGAGAT 58.092 33.333 0.00 0.00 0.00 2.75
3990 4732 7.065803 CGGGTGCTAAATAAGAAAAATCTGAGA 59.934 37.037 0.00 0.00 0.00 3.27
3991 4733 7.189512 CGGGTGCTAAATAAGAAAAATCTGAG 58.810 38.462 0.00 0.00 0.00 3.35
3992 4734 6.404293 GCGGGTGCTAAATAAGAAAAATCTGA 60.404 38.462 0.00 0.00 38.39 3.27
3993 4735 5.743872 GCGGGTGCTAAATAAGAAAAATCTG 59.256 40.000 0.00 0.00 38.39 2.90
3994 4736 5.448632 CGCGGGTGCTAAATAAGAAAAATCT 60.449 40.000 0.00 0.00 39.65 2.40
3995 4737 4.733405 CGCGGGTGCTAAATAAGAAAAATC 59.267 41.667 0.00 0.00 39.65 2.17
3996 4738 4.439563 CCGCGGGTGCTAAATAAGAAAAAT 60.440 41.667 20.10 0.00 39.65 1.82
3997 4739 3.119779 CCGCGGGTGCTAAATAAGAAAAA 60.120 43.478 20.10 0.00 39.65 1.94
3998 4740 2.420722 CCGCGGGTGCTAAATAAGAAAA 59.579 45.455 20.10 0.00 39.65 2.29
3999 4741 2.011222 CCGCGGGTGCTAAATAAGAAA 58.989 47.619 20.10 0.00 39.65 2.52
4000 4742 1.065998 ACCGCGGGTGCTAAATAAGAA 60.066 47.619 31.76 0.00 39.65 2.52
4001 4743 0.538118 ACCGCGGGTGCTAAATAAGA 59.462 50.000 31.76 0.00 39.65 2.10
4002 4744 3.074594 ACCGCGGGTGCTAAATAAG 57.925 52.632 31.76 0.00 39.65 1.73
4015 4757 1.209127 CTTTTTACTGCCCACCGCG 59.791 57.895 0.00 0.00 42.08 6.46
4016 4758 1.080772 GCTTTTTACTGCCCACCGC 60.081 57.895 0.00 0.00 38.31 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.