>input_sequence_38983
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-------------------------------------------------------------------ATGTCGACGCCGG
GCGGGGAGGAGGACAAGAAGCCGGCGAGCGCGGGCGGCGAAGGCGGCGGCGCCCACATCAACCTCAAGGTCAAGGGCCAG
GTCTGTTCCCCCGTTCCTTCCTTCTCTGCCTGCGTCCCCTGTGTTCTTATTTAGATTGCCCTAGTCGCGACGGCCGTGTG
TCCCTGGGTGTCCAAGGTGTGGCCTGTGATATAGAAGGCGGAATCGCGTCGATTTGAGTGGGATCGGCGTGTTGTGTGGT
CTTGGTTTTCCTAGAAATTCGTTCGCGGTATGATATGCGCTATCGCGCGGCCGTGGTGTCGCGGATGTACTCTTTACATG
TAGTGAATTGACAAGCCTGCGTGATGTTAAGATTGAACTCTGCAC-------------CACTAGCA-CTAGTTATTTGAT
GCTGAATTTCTGTTGGAAGTAAACAATGGGGGCAACAGTAGCAAGATGAAACACTAGAACCCAACACCTGGATCGCTTCA
GAATATTTGCAGTAAGATGTGTCTTCTGTACCGGCATTTTGTCAGTCAATTTTCAGTTAACGTTGTCCCATTTGTTCTTT
TGTCAGGTAGTTACCGTTTTGTGCAACCATTGTATGCTGGTGTCAGTGTGCTCCTTGTGCATGCTAATTTGTTCATGAAA
CTTTGTTATGCAAGGACAGTGATGTTTTTATGTTTCTTTTCTTGTTTCATATGGACAATTGTAGTGCTAGTGAACTTA--
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---------TTTTATCAAACGTAGGTGATTGGGTCCAGTTTCTGGTGGC-------------------------------
----------------------------------AAAAACTCTAAACAAAGAATTTAGTATGTTATTGGTCACTCTTGGT
AATCTACAGTTGTGAAGTGGCTGCCAGAAGGACCACTTATCCGCACC-AAATAGTTAGGCAAACGTTT-CAACTGAAGCG
TCTTTATTCTGT-------ATGTCAATAGACCGATGCTGGCACTGGTAGTGACCAGTTGGTAAAGCTTTTCAGACCAAAT
TTTTTGAGGTTGT------------------TTGACAATATGCTTGCTAATTTAAGGACAGTGTGAGGCTTTT----TTT
TTCTTGTTTAATTAGGACAACTGTAGTGTTGCTGAACATCTTTTAAAAAATGAAGGTGATTGAATCCAAACTGTCAACAG
TTAGAATTTAATATGGTATTGGTCACTGTTGGTAATGTG-----------------------------------------
-------------------------------------------CAGTTGTGAGGTGGCTACCA-GAAGGGAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATCTCTATTTCG----------------------------------
--------------------------------------------------------------------------------
-----TTACC-AGTTTGTAGACATATTTTAGTAACTTGCAGTTGGGAAAGCCATCAAAACCATATAATGGGGTGGTTTGA
TTTGAAGAA-TGTCTTAACAATATTGCCTGT-AGTGTATTTGTTTATTTTGGGGTAGTTGTGTTTAGTGACC--------
-------------------------AAAGCAGCAGATTCTTGTTTCATACTTGGTTTCATGTTAAACCTTTTTTTTACAA
TTGTTTTACTACCCTC---TATGAACATGTTCTCATAACATCTTTCAAAGTTCAGAGAAGGTAGTGCTCTAATTGCTTGA
TATTGGTTAGAAGCACCTCATGGTAAAAACAGACTACATTCAGTGACCAAACTGAAAGGATGCACTGATTTATGCTAGTA
TGACTTAAGGTTGCGGGATTTATCCTGTAGATGGTTGT-TGATTTCAGTAGTTGCAGTAGGATGATGTTGTGTTTTACTT
CT-----------CATTGTATATTTAATAAGTTGCTTACTCTGTTTCATTGGCGCCTAGTCTCACCTTTCTGACCCCTG-
GTGTGTAGGATGGCAATGAGGTGTTCTTTCGCATCAAGAGATCTACCCAGCTGAAGAAGCTGATGAATGCCTACTGCGAC
CGCCAGTCTGTGGATATGAAAGCTATCGCGTTCCTGTTTGACGGTCGCAGGCTCCGTGCCGAGCAGACCCCAGATGAGGT
ATGTGGGGTCACCTTCTCACAATTCCTCAACCAATAACCC-CCTTCAGATTTCTGAATCTTCTTTCGCCGCTGCTGTTTC
AGCTTGAGATGGAAGATGGCGACGAGATCGACGCCATGCTCCACCAGACTGGAGGCTGCCGTCTCCCTCCAAGCGCCTAG
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>chr3D_1_TraesCS3D01G419200
CAGCCAGCGACTTGCAGCTCCATTGCAGCTCCGCTGTCGGTGCCGAGCGCTTGATTGCAGCTCCGCCTCCGGCGACGAAC
GCTCCATTGCAGCTCCGCCGCCGTCGCGCGAGTACTGCATCGGAGCACGAGACTGCATCGCAGCGCAGACGAGGTTGCAG
CGCAGCGCGACGGCCATGGACGCATTGCTGCCCCGCATCCCGGCGACCGTGGATGCGTTGCAGCGTTGCAGCACCGGCGT
TCGTCAACGAGCGCCGTTTCGTATCGCCGGCAGTACCTCCTGCCTCCTGGTTCCCCGT-TGCTGTGGTGGTGCCCGCCAT
GGCTCCCCTCCATGGACGC-----------TATGCCGCCCACAAGGCCACAACAATGCAGCGGAGGAGCTCCGGCTGGTA
CTGCCAGCGGTCGCGCGTCAAACACTTCCGATTTCCAAGGTACTACAGT--------GGTGCTTGCCGTGGCTAATCTCC
TGTGGCTGTGAGATGCAAGGGGAAGAAAGAAGA-AAGAAGTGAGTGGAGGAGGAGCTTCGTTAGAGATAAGATAAGGTTG
GGGC-AAGCGGTGGGCAGTCTGAAGCG-----GGCACGTGGCGCGTGGAGAAGGAGGCTTACGAGAAAGAAAGATCAACC
GGATGATTTTTAACGTTTTCCAAACGGTAACTACTCCAGAACCCAAAAGGCGCACGGGTCGGTGGGACCCGGCATCTGTC
CCGATTCCCCGCGTGCGAATCACGCACACGCGGCCCACGAGGCGACAGACGGACGGACGGCCCGCCAATCGGACGCGCGG
AGCCACGCGGCCCACACGCGCAGGCTTGGAAGAAGGGGAAGGGATCGCGGACGCGAGGGCCCGTTATCAAATCCGGCTCT
GGGCAGCCGCCCTATAAGATCCGCCGAGTTCGCCTGCTCCCGGCGGCACACCCCGGGAAAACCTCAGCCGCGATCGCCGG
ACCTTCCTCGTTCGTTCCCGGCGACGCTGCTGCAGATCAGTCCTACGCCGCGCGAGGGGCCGAGGAGATGTCGACGCCGG
GCGGGGAGGAGGACAAGAAGCCGGCGAGCGCGGGCGGCGAAGGCGGCGGCGCCCACATCAACCTCAAGGTCAAGGGCCAG
GTCTGTTCCCCCGTTCCTTCCTTCTCTGCCTGCGTCCCCTGTGTTCTTATTTAGATTGCCCTAGTCGCGACGGCCGTGTG
TCCCTGGGTGTCCAAGGTGTGGCCTGTGATATAGAAGGCGGAATCGCGTCGATTTGAGTGGGATCGGCGTGTTGTGTGGT
CTTGGTTTTCCTAGAAATTCGTTCGCGGTATGATATGCGCTATCGCGCGGCCGTGGTGTCGCGGATGTACTCTTTACATG
TAGTGAATTGACAAGCCTGCGTGATGTTAAGATTGAACTCTGCAC-------------CACTAGCA-CTAGTTATTTGAT
GCTGAATTTCTGTTGGAAGTAAACAATGGGGGCAACAGTAGCAAGATGAAACACTAGAACCCAACACCTGGATCGCTTCA
GAATATTTGCAGTAAGATGTGTCTTCTGTACCGGCATTTTGTCAGTCAATTTTCAGTTAACGTTGTCCCATTTGTTCTTT
TGTCAGGTAGTTACCGTTTTGTGCAACCATTGTATGCTGGTGTCAGTGTGCTCCTTGTGCATGCTAATTTGTTCATGAAA
CTTTGTTATGCAAGGACAGTGATGTTTTTATGTTTCTTTTCTTGTTTCATATGGACAATTGTAGTGCTAGTGAACTTA--
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---------TTTTATCAAACGTAGGTGATTGGGTCCAGTTTCTGGTGGC-------------------------------
----------------------------------AAAAACTCTAAACAAAGAATTTAGTATGTTATTGGTCACTCTTGGT
AATCTACAGTTGTGAAGTGGCTGCCAGAAGGACCACTTATCCGCACC-AAATAGTTAGGCAAACGTTT-CAACTGAAGCG
TCTTTATTCTGT-------ATGTCAATAGACCGATGCTGGCACTGGTAGTGACCAGTTGGTAAAGCTTTTCAGACCAAAT
TTTTTGAGGTTGT------------------TTGACAATATGCTTGCTAATTTAAGGACAGTGTGAGGCTTTT----TTT
TTCTTGTTTAATTAGGACAACTGTAGTGTTGCTGAACATCTTTTAAAAAATGAAGGTGATTGAATCCAAACTGTCAACAG
TTAGAATTTAATATGGTATTGGTCACTGTTGGTAATGTG-----------------------------------------
-------------------------------------------CAGTTGTGAGGTGGCTACCA-GAAGGGAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATCTCTATTTCG----------------------------------
--------------------------------------------------------------------------------
-----TTACC-AGTTTGTAGACATATTTTAGTAACTTGCAGTTGGGAAAGCCATCAAAACCATATAATGGGGTGGTTTGA
TTTGAAGAA-TGTCTTAACAATATTGCCTGT-AGTGTATTTGTTTATTTTGGGGTAGTTGTGTTTAGTGACC--------
-------------------------AAAGCAGCAGATTCTTGTTTCATACTTGGTTTCATGTTAAACCTTTTTTTTACAA
TTGTTTTACTACCCTC---TATGAACATGTTCTCATAACATCTTTCAAAGTTCAGAGAAGGTAGTGCTCTAATTGCTTGA
TATTGGTTAGAAGCACCTCATGGTAAAAACAGACTACATTCAGTGACCAAACTGAAAGGATGCACTGATTTATGCTAGTA
TGACTTAAGGTTGCGGGATTTATCCTGTAGATGGTTGT-TGATTTCAGTAGTTGCAGTAGGATGATGTTGTGTTTTACTT
CT-----------CATTGTATATTTAATAAGTTGCTTACTCTGTTTCATTGGCGCCTAGTCTCACCTTTCTGACCCCTG-
GTGTGTAGGATGGCAATGAGGTGTTCTTTCGCATCAAGAGATCTACCCAGCTGAAGAAGCTGATGAATGCCTACTGCGAC
CGCCAGTCTGTGGATATGAAAGCTATCGCGTTCCTGTTTGACGGTCGCAGGCTCCGTGCCGAGCAGACCCCAGATGAGGT
ATGTGGGGTCACCTTCTCACAATTCCTCAACCAATAACCC-CCTTCAGATTTCTGAATCTTCTTTCGCCGCTGCTGTTTC
AGCTTGAGATGGAAGATGGCGACGAGATCGACGCCATGCTCCACCAGACTGGAGGCTGCCGTCTCCCTCCAAGCGCCTAG
AAGAAGCCGTCGAAAGTCCTGCTCGTTGTCGGTCTACAAGACTCTGATCCATCATTAGAGAGCACATGAACGAATGAAAG
TCTAAAAAGAACTTGTGAGGCTCTGGCCCCATGCCATAGCTGAAGGACATTAGGGGGGCTTTTGTTTAGTGCCGTTTGGG
TACTTTGGCCTGTCATGACTCGTTTATCCATCCCTTAATATATCCACCTATCCAGTACTGTCTTTTTAGTACTCCCAATG
ATTTGTGATTGTTTTAGTTCCTCGAAGCTTTCTGTGTGTTTGGTTTCGCTTTGCTTTGCCGACAGTCCGTTCTGTCCCGT
GTACGTTGGGCACACGGTGTTGGGGAGGATTAGTTTTGTGTTGCCGCTGCATGGGTATTCGAGCGATTACTGTTGAGATT
TCCTAACATGAGCCTGCT-GCTTTGATTGGATTATCTTATTATTATTACTCTTAGTATAAGCCTGTTGTTGTTAGACGG-
-GAACGGGCTATTGGAATATTTCGTCTTTGTCGACATGTCTTCTTGTAGCGT-------GCTGACTGAGTTCAGTCAGAA
CCGTGACTCCGTGAGCTATC------AGTGGGAGTGTTGTTGGTTTGGCTGCTGTACGGCTTAGTATTATTTTCCTCAGG
TGCATTACTTAGTTGCTAAAATGAATCACAATAATATGTTTTAGGCACTAGCAGCTCTGATAGGGTACGACAAGTTTGGC
CGGTCGTTTCGAAACGGCATCATAATATAACATCCACATGCTTCGACAGTTTGATCTCAAGAAGGACATGTTTTGTTGCT
ACTGAGTATTTTGGAAATTCACCAGAAGGAAACATTTAGGGTCATTCATTTTCTATGTATTTTTTGGGGAGAAATCACTT
TTTGTGTTTGCGATTTCGTCGGCATGACATACTCCTGGTTGTGTTCAATTTTGTTTGCAATTTTTCTAGAGATTCATTGT
ATCTATCTTTATCTCAGATTTTTCTTATTTAGCACCCGCGGTGGGCAGTAAAAAGC
>chr3B_17
----------------GCTCCATTGCAGCTCCGCGCCTGCGTCGAGCATCTCCATTGCAGCTCCGCCGTCGGCGTCGAGC
GCTCCATTGCAGCTCCCCCGCCGTCGCTCGAGTACTGCAACGGCACGCAAGGTTACATTGCATCACGGACGAGGTTGCAA
CGCACCGTGATGGCCGTGGACAAGTTGTTGTGTCGCATACTGGCGGCCATCGACGCGTTGGTGCGTTGCAGCACCGGCGT
TCGTCAACGAGCGCCGTTTCGTATCGCCGGCAGCA-------CCTCCCGGTTCCCCCGCTGCTGTGGTGGTGCTCACCAT
GGCTCCCCTCAATGGGCGCTGCTTTGCAACTATGCCGCCTCCTGCG--------ATGCAACGGAGGAGCTCCGGCTGTTG
GTGCCGACGGCCGGCGTCAAAGCTCTTCCATCTTCCTAGCTGTTGTGGTGGTGCTCGGCTGCTCGGCATGGCTAATCTCT
TGGTGATGG--GATGTAAGAGGAAGAAAGAAAAGAAGAAATGAGTGGAGGAGCTGCGTT-TTAGAGATGAGATAAGGTTG
GAGCGAAGCGGTGGGCAGCCGCAGCCTGACGCGGCACGTGGCACGTAGAGAAGGAGGCTTACAAGAGAGAAAGGTAAGTC
AGATGATTATTAATGTTTTCCA----------------------------------------------------------
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>chr3B_645
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-------------------------------TACTCCACAACCCAAAAGGCGCACGGGTCGGTGGGACCCGGCATCTGTC
CCGATTCCCCGCGTGCAAATCACGCACACGCGGCCCACGAGGCGACAGACGGACGGGCGGCCCGCCAATCGGACGCGCGG
AGCCACGCGGCCCACACACGCAGGCTTGGAGGAAGGGGAAGGGATCGCGGACGCGAGGGCCCGTTATCAAATCCGGCTCT
GAGCAGCCGCCCTATAAGATCCGCCGAGTCCGCCTGCTCCCGGCGGCACACCCCGAGCAAACCTCAGCCGCGATCGCCGG
ACTTTCCTCGTTCGTTCGCGCCGACGCTGCTGCAGATCAATCCCACGCCGCGCGAGAGGCCGAGGAGATGTCGACGCCGG
GCGGGGAGGAGGACAAGAAGCCGGCGAGCGCAGGCGGCGAAGGCGGCGGCGCCCACATCAACCTCAAGGTCAAGGGCCAG
GTCTGTTCCCCCGTTCCTTCCTTCTCTGCCTGCCTCCCCTGTGCTCTTATTCAGATTGCCCTAGTCGCGATGGCCGTGTG
CCCCTGGGTGTCCATGGTGTGGCTTGTGACATAGATGGCGGAATCGTGTCGATTTGAGTGGGATCGGCGTGTTGTGTGGC
CGCTGTTGTCCTAGAAATTCGTTGTTGGTATGATATGCGCTATCGCCCGGCCGTGGTGTCGCGGGCGTACTGTGTACATG
TAGTGGATTGACAAGCCTGCGTGATGTTAAGATTGAACTGTGGAGAAGGAGAAATCTGCACATAGCGCTAGTTGTTTGAT
GCTGAATTTCTGTTGGAAGTAAACAAT-GGGGCAACAGTAGCAAGATGAAACACTAGAACCCAACACCTGAATTGTTTTG
AATATTTTGCAATAAGATGTGTTTTCTGTGCAGGCATTTTGTCTGCTCAACAGTG--------------------TCTTT
TGTCAGGTAGTTA-CGTTTTGTGCAACCATTGTATGCTGTTGTCAGTGAGCTCCTTGTGCATGCTAAATTGTTCATACAA
TTTTGTTATGCAAGGACAGTGAATG--------TTTTTTTCTGGTTTCATATGGACAATTGTAGTGCCAGTTAACTTCTT
GTATCAGATGAAGGTGGCTGAATCCAGTTTCTGGTGGCAAAAACTCTCAACATAGAATTTAGTATGTTATTGCTCACTGT
TGATAATATGCAGTTGTGAAGTGACTGCCAGAAGGAACACTTGTCTGCACCAAATAGTTAGCCAAAATTTCATATTAAAC
TTCTTTATTCTGTTAGTATAATGTCAATAGACAGGTGTCCAAACAAAAAAAATTGAGGTTGTATGGTTTGAAAAATTGTC
TTAACAATATGGTTGCTAATTTAAGGAGGACAGTGTGAGCCTTTTTTTTCTGGTTTATTATTAGGACAACTGTAGTGTTG
CTGAACATCTTTTATCAAATAAAGGTGATTGAGTCCAGTCTCTGGTGGCAAAATTTGTAGTGCTAGTGAACTTCTTTTAT
CAAATGGAGGTGATTGAATGCAGCTTCTGGTGGCAAAAAGTCTCAACAAAGAATTTAGTATGTTAGTAGTCACTG-TGGT
AATCTACAGTTGTGAAGTGACTGCCTGAACGGACACTTATCTGCACC-AAATAGTTAGGCAAATGTTT-CATTTGAAACA
TCTTTATTCTGTTAGTATAATGTCAATAGATGGATGCTGG------TAGTGATCAGTTGGTAAAGCTTTCCAGACCAATT
TTTTTGAAGTTGTTTGGTTTGAAAATTTGTCTTGACAATATGCTTGCTAGTTTAAGGACAGTGTGAGGCTTCTGTTTTTT
T-CTTGTTAAATTAGGACAACTGTAGTGTTGCTGAACATCTTTTATCAAATGAAGGTGATTGAATCCAAATTGTCAACAG
TGAGAATT------------GGTCACTGTTGGTAATGTGTACTCCCTCCGTCCCAAATTAAGTGACTCAACTTTGTACTT
GCTTTAGTACAAACTTGAGACACTTATTTTGAGAAGGAGGGAGTAGTTGTGAAGTGGCTACCAGGAAGGGAACACTTTCA
GACCAAATAGCTAGGCAAAAGTTTTGTTTTAAGCATCTCTATTCAGTTACT-----------------------------
-------------------------------------------------------ATTTAAGTATAAT--ATCCAAGGCA
CAACATTACC-AGTTTATAGACATATTTTAGTTACTTCAAGTTGGCAAAGCCATCAAAACCAAATAATGGGGTGGTTTGA
TTTGAAGAATTGTCTTAACAATATGCT-TGT-AGTGTATTTGTTTATTTTGTGGTACTTCTGTTTAGTGAACAAAGCATC
AGATATTTATTTTGTGTGAAATACAAAAGCATCGGATTCCATTTTCATCCTTGGTTTCATCTTACAAGTTTTTTTTACAA
TTGTTGTACTGCTCTAATTTATCAACATGTTGTCATAACATCTTTCAAAATTCAGAAAAGGTAGTGCTCTAATTGCTTGA
TATTGATTAGAAGCACCTCATGGTAAAAACAGACTACATAAAGTGACTAAACTGAAAGAATGCACTGATTTATGCAAGTA
TGCCCTC-----------------------ATGGTTGT-TGATTTCAGTAGTTGTAGTAGGATGATGTTGTGTTTTACGC
AT-----------CATTGTATATTTAATAATTTCCTTACTC-----CATTGGTGCCTTGTCTCACCTTTCTGATCCCTT-
GTGTGTAGGATGGCAATGAGGTGTTCTTTCGCATCAAGAGATCTACCCAGCTGAAGAAGCTGATGAATGCCTACTGCGAC
CGCCAGTCTGTTGATATGAAAGCTATCGCGTTCCTGTTTGACGGCCGCAGGCTCCGAGCCGAGCAGACCCCTGATGAGGT
ATGTGCGGTCACCTTT--ACAATTCCTCAACCAATAACCCACCTTCTGGTTTCTGAATCTTCTTTTATTGTCACTCTTTC
AGCTCGAGATGGAAGATGGCGACGAGATCGACGCCATGCTTCACCAGACCGGAG---GCCGCCTCCCTCCAAGCGCCTAG
AAGAAGCCGTTGAAAGTCTTGCTCCTTGTTGGTCTAC------CTGATCCATCATTAGAGAGCACATGAATGAATGAAAG
TCTAAAAAGAACTTGTGAGGCTCTGGCCCCATGCCATAGCTGAAGGACATTAGGGGAGCTTTTGTTTAGTGCCGTTTGGG
TACTTTGGCCTGTCATGACTCGTTTATCCAACCCTTAATATATCCACCTATCCAGTACTGTCTTTTTAGTACTCCCAATG
ATTTGAGATTGTTTTAGTTACTCGAAGCTTTCTGTGTGTTTGGTTTCGCTTTGCTTTGCCGACAGTCCGTTCTGTCCCGT
GTACGTTGGGCACACGGTGTTGGGGAGGACTAGTTTTGTGTTGCCGCTGCATGGGTATTCGAGCGATTACTGTTGAGATT
TCCTAACATGAGCCTGCT-GCTTTGACTGGATTATC------TTATTGCTCTTAGTATAAGCCTGCTGCTGTTGTTAGGC
TGAACGGGCTATTGGAATATTTCGGCTTTGT-------------------------------------------------
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>chr3A_1306
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----------------------------------------------------GTGGTGTCGTGGGTGCACTGTGTACATG
TAGTGGATTGACAAGCCTGCGAGATGTTTAGATTGAACTGTGAAGAAGGAGCAATCTGCACTAGCA-CTAGTTGTTTGAT
GCTGAATTTCTGTTGCAAGTATACAAT-GGGGCAACAGTAGCAAGATGAAACAATAGAACCCAACACCTGGATCGCTTCA
GAATATTTGCACTAAGATGTGTCTTCTGTGCCGGCATTTTGTCTGTCAAATTTCAGTTAACGTTGTCCTATTTGTTCTTT
TGTCAGGTAGTCACCGTTTTGTGCAACCATTGTATGCTGTTGTCAGTGAGCTCCTTGTACATGCTAAATTGTTCATGCAA
CTTTGTTATGCAAGGACAATGATGTTTATATGTTTTTTTTCTGGTTTCATATGGACACTTGTGGTGCTAGTGAACT----
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----------TTTATCCAATGAAGGTGATTGGATCCAGTTTCTGGTGGC-------------------------------
----------------------------------AGAAACTCTCAACAAAGAATTTAGTATGTTATTGATCACTGTTGGT
AATCTACAGTTGTGAAATGACTGCCAGAAGGACCATTTATTGGCACCAAAATAGTTAGGCAAACGTTTTCATTTGAATCA
TCTTTATTCTGTTTGTACAATGTCAATAGGCAGATGCTGT------TAGTGACCAGTTGGTGAAGCTTTAC---------
-----------------TTTGAAAATTTGTCTTGACAGTAGGATTGCTAATTTAAGAACAGTGAGGCTT-----------
-------------------------------CTGAACATCTTTTATCAAATGAAGCTGATTGAATCCAAATTGTCAACAG
TGAGAATTTAATATGGTATTGGTTGCTGTTGGT-ATGTG-----------------------------------------
-------------------------------------------CAGTTTTGAAGTGGCTACCA-GAAGGGGACACTTTCA
GACAAAATAATTAGGAAAAAGCTTTGTTTTAAGCATCTGTATTCTGCTACTCCCTCCGTTCCAAATTACTCGTCGTGGTT
TTAGTTCAAATTTGAACTAAAACCACGACAAGTAATTTGGAACGGAGGGAGTACCAGTTTAGTATAAT--ATCCAAGGCA
CAACATTACCTAGTTTATAGACATATTTTAGGAACTAACAGTTGGCCAAGCCATCAAAACCAAATAATGCGGTGGTTTGA
TTTGAAGAATTGTCTTAACAATATGCT-TGTAAGTTTATTTGTTTATTTTGGGGTAGTTGT--TTAGTGACCAAATTATC
AGATAATTTTCTT-TGTGAAATATAAAAGCATCAGATTACATTTTCATACTTGGTTTCCTGTTAAACTTTTTTTATG--A
TTGTTATACTGCTCTC---TATGAACATGTTGTCATAACATCTTTCAAAAGT-AGAAAAGGTAGTGCTCTAATTGCTAGA
TATTGGTTAGAAGCACCTCATGGTAAAAACAGACTACATTCAGTGACCAAACTGGAAGGATGCACTAATTTATGCAAGTA
TGACTTAAGGTTGCGGGATTTTTCCTGTAGATGGTTAT-TGATTTCAGTAGTTGCAACAGGATGATGTCGTGTTTTATTT
CT-----------CATTGTATATTTAATAATTTTCTTACTCTGTTTCATTGGC-----GTCTCACCTTTCTGACCCCTGT
GTGTTTAGGATGGCAATGAGGTGTTCTTTCGCATCAAGAGATCTACCCAGCTGAAGAAGCTGATGAATGCCTACTGCGAC
CGCCAGTCTGTGGATATGAAAGCTATTGCATTCCTGTTTGACGGTCGCAGGCTCCGTGCCGAGCAGACCCCTGATGAGGT
ATGTGGGGTCACATTCTCACAATTCCTCAACCAATAGCCC-CCTTCAGATTTCTGAATCTTCTTTTGTCGCTGTGGTTTC
AGCTTGAGATGGAAGATGGCGACGAGATCGATGCCATGCTCCACCAGACCGGAG---GCCGCCTCCCTCCACGCGCCTAG
AAGAAGCCGTTGAGAGTCCTGCTTGTTGTCGGTCTACAAGACTCTGATCCATCATTAGAGAGCACATGAACGAATGAAAG
TCTAAAAAGAACTTGTGAGGCTCTGGCCCCATGCCATAGCTGAAGGACATTAGGGGAGGTTTTGTTTAGTGCCGTTTGGG
TACTTTGGCCTGTCATGACTCGTTTATCCATCCCTTAATATATCCACCTATCCAGTACTGTCTTTTTAGTACTCCCAATG
ATTTGAGATTGTTTTAGTTCCTCGAAGCTTTCTGTGTGTTTGG-----CTTTGCTTTGCGGACAGTCCGTTCTGTCGCGT
GTACGTTGGGCACACGGTGTTGGGGAGGATTAGTTTTGTGTTGCCGCTGCATGGTTATTCGTGTGATTACTGTTGAGATT
TCCTAACATGAGCATGCTTGCTTTTATTGGACTATC------TTATTGCCCTTAGTATAATCCTGATGTTGTTAGACGG-
-GTACGGGCTATTGGAATATTTCGTCTTTGTCGTCATGTCTTCTTGTAGCGTGCTGAGTGCTGACTGAGTTCAGTCAGTA
CTGTGACTCCGTGAGCTATCTGTGGGAGTGGGAGTGTTGTTGGTTTGGCTGCTGTACGGCGAAATGTT-TTTTCCTCAGG
TGCATTACTTCGTTGCTAAAATGAGTCAC---AATATGTTTTAGGCACTAGCAGCTCTGATAGGGTACGACAAGTTTGGC
CGGTCGTTTCGAAACGGCATCATAATATAACATCCACATGCATCAGACAGTTT---------------------------
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>chr3A_1964
TTGTCT--------------------------------------------------------------------------
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--------------------------------TAACAATATGCCTGCTAATTTGAGGACAGTGTGAGGCTTCTGTTCTTT
TTCTTGTTTAGTTATGACAACTGTAGTGTTGCTGAACATCTTTGATCAAATGAAGGTGATTGAATCCAACTTGTCAACAG
TGAGAATTTAATATGGTATTGGTCACTGTTTGTAATGTG-----------------------------------------
-------------------------------------------CAGTTGTGAAGTGGCTACCA-GAAGGAAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATCTTTATTCCATTACC-----------------------------
-------------------------------------------------------AGTTTAGTATAACATACCCAAGACA
CAACATTACC-AGTTTATAGTCATATTTTAGCAACTTCCCGTTGTCTAAGCCATCAAAACCAAATAATGGGGTTGTTTGA
TATGAAGAATTGTC--AATAATAGGCT-TGT-AGTGTATTTGTTTATTTTTGGGTAGTTGTGTTTAGTGAAC--------
--------------------------------------------------------------------------------
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-------------------------AAAACAGACTACATTCAGTGACCAAACTGAAAGCATGCACTGATTGTTGCAAGTA
TGTTTTCATGTTACCAGATTTTTCCGGTTGATGGTTGTGTTATTTCAGTAGTCACAGTAGGATGATGTGATGATTGACTC
ATTTTACTTCTAACATTGCATATTTCATAGTCTACTTAGTCTGCTGCATCAGTGCCTAGTATCACCTTGCTG--------
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>chr2A_1964
TTGTCT--------------------------------------------------------------------------
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--------------------------------TAACAATATGCTTGCTAATTTGAGGACAGTGTGAGGCTTCTGTTCTTT
TTCTTGTTTAGTTATGACAACTGTAGTGTTGCTGAACATCTTTGATCAAATGAAGGTGATTGAATCCAAATTGTCAACAG
TGAGAATTTAATATGGTATTGGTCACTGTTTGTAATGTG-----------------------------------------
-------------------------------------------CAGTTGTGAAGTGGCTACCA-GAAGGAAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATATTTATTCCATTACC-----------------------------
-------------------------------------------------------AGTTTAGTATAATATACCCAAGACA
CAACATTACC-AGTTTATAGTCATATTTTAGCAACTTCCCGTTGTCCAAGCCATCAAAACCAAATAATGGGGTTGTTTGA
TCTGAAGAATTGTC--AATAATAGGCT-TGT-AGTGTATTTGTTTATTTTGGAGTAGTTGTGTTTAGTGAAC--------
--------------------------------------------------------------------------------
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-------------------------AAAACAGACTACATTCAGTGACCAAACTGAAAGCATGCACTGATTGTTGCAAGTA
TGTTTTCATGTTACCAGATTTTTCCGGTTGATGGTTGTGTTATTTCAGTAGTCACAGTAGGATGATGTGATGATTGACTC
ATTTTACTTCTAACATTGCATATTTCATAGTCTACTTAGTCTGCTGCATCAGTGCCTAGTCTCACCTTGCTG--------
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>chr5A_1964
TTGTCT--------------------------------------------------------------------------
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--------------------------------TAACAATATGCTTGCTAATTTGAGGACAGTGTGAGGCTTCTGTTCTTT
TTCTTGTTTAGTTATGACAACTGTAGTGTTGCTGAACATCTTTGATCAAATGAAGGTGATTGAATCCAAATTGTCAATAG
TGAGAATTTAATATGGTATTGGTCACTGTTTGTAATGTG-----------------------------------------
-------------------------------------------CAGTTGTGAAGTGGCTACCA-GAAGGAAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATCTTTATTCCATTACT-----------------------------
-------------------------------------------------------AGTTTAGTATAATATATCCAAGGCA
CAACATTACC-AGTTTATAGTCATATTCTAGCAACTTACCATTGTCCAAGCCATCAAAACCAAATAATGGGGTTGTTTGA
TCTGAAGAATTGTC--AACAATAGGCT-TGT-AGTGTATTTGTTTATTTTGGGGTAGTTGTGTTTAGTGAAC--------
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-------------------------AAAACAGACTACATTCAGTGACCAAACTGAAAGCATGCACTGATTGTTGCAAGTA
TGTTTTCATGTTACCAGATTTTTCCGGTTGATGGTTGTGTTATTTCAGTAGTCACAGTAGGATGATGTGATGATTGACTC
ATTTTACTTCTAACATTGCATATTTCATAGTCTACTTAGTCTGCTGCATCAGTGCCTAGTCTCACCTT------------
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>chr1A_1964
TTGTCT--------------------------------------------------------------------------
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--------------------------------TAACAATATGCTTGCTAATTTGAGGACAGTGTGAGGCTTCTGTTCTTT
TTCTTGTTTAGTTATGACAACTGTAGTGTTGCTGAACATCTTTGATCAAATGAAGGTGATTGAATCCAATTTGTCAACAG
TGAGAATTTAATATGGTATTGGTCACTGTTTGTAATGTG-----------------------------------------
-------------------------------------------TAGTTGTGAAGTGGCTACCA-GAAGGAAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATCTTTATTCCATTACC-----------------------------
-------------------------------------------------------AGTTTAGTATAATATATCCAAGGCA
CAACATTACC-AGTTTATAGTCATATTTTAGCAACTTACCATTGTCCAAGCCATCAAAACCAAATAATGGGGTTGTTTGA
TCTGAAGAATTGTC--AACAATAGGCT-TGT-AGTGTATTTGTTTATTTTGGGGTAGTTGTGTTTAGTGAAC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAAACAGACTACATTCAGTGACCAAACTGAAAGCATGCACTGATTATTGCAAGTA
TGTTTTCATGTTACCAGATTTTTCCGGTTGATGGTTGTGTTATTTCAGTAGTCACAGTAGGATGATGTGATGATTCACTC
ATTTTACTTCTAACATTGAATATTTCATAGTCTACTTAGTCTGCTGCATCAGTGCCTAGTCTCACCTTGCTG--------
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>chr6A_1968
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-------------------------------TTAACAATATGCTTGCTAATTTGAGGACAGTGTGAGGCTTCTATTCTTT
TTCTTGTTTAGTTAGGACAATTGTAGTGTTGCTGAACATCTTTGATCAAATGAAGGTGATTGAATCCAAATTGTCAACAG
TGAGAATTTAATATGGTATTGGTCACTGTTTGTAATGTG-----------------------------------------
-------------------------------------------CAGTTGTGAAGTGGCTACCA-GAAGGAAACACTTTCA
GACCAAATAGTTAGGCAAAAGTTTTGTTTTAAGCATCTTTATTCCATTACC-----------------------------
-------------------------------------------------------AGTTTAGTATAATATATCCAAGGGA
CAACATTACC-AGTTTATAGTCATATTTTAGCAACTTAACATTGTCCAAGCCATCAAAACAAAATAATGGGGTTGTTTGA
TCTGACGAATTGTG--AACAATAGGCT-TCT-AGTGTATTTGTTTATTTTGGGGTAGTTGTGTTTAGTGAAC--------
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-------------------------AAAACAGACTACATTCAGTGACCAAACTGAAAGCATGCACTGATTGTTGCAAGTA
TGTTTTCATGTTACCAGATTTTTCCGGTTGATGGTTGTGTTATTTCAGTAGTCATAGTAGGATGATGTGATGATTGACTC
ATTTTACTTCTAACATTGCATATTTCATAGTCTACTTAGTCTGCTGCATCAGTGCCTAGTCTCACCTTGCTG--------
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--------------------------------------------------------
>SNPs
SS-S-SSSSSSSSSSS------------------SSSS-SSS-SSSSSS--SS--------------SS-----S---S-
----------------S----------S-----------S---SS-S-S--SS-S---S---S-S-S------------S
----S--S--S----S-----SSS---S--SSS-----S-S----S--S-S--S------SS------------------
---------------------------------S-SSSSSSS-----S--------SS---------------S-S----
----------S----S-----------------------SS-SSS-SSSSSSSS-----S-----------------S-S
S----SS---S--SSSSSS--S-S-----SSS----S--S-SS-SSS-----------S----S-S-S-----------S
--SS-S--SSS----S---S-----------S-------S------------SS--S-SS--------S-----------
-S----------------S-SS-SS-S---------------S---S---------------S---S------S-S-SS-
S-------S----S--------SSSSSSSSS-------S-----------------------------------------
----------------S---------------------------------------S-----------------------
-----------------S------------S-------------------------------------------------
-S---------------------------S-------------------------S-S----------------------
--S--------------S--S------------------S---S------------S-----------------------
-------------------------------S------------------------------------------------
---------------------------------S---------S-------S------------------S---------
S-------------S--------S-----S-----S----------S--------------------------------S
-SSS---S---------------SSS--------------------S-----------------S------S-S------
-----S---------------------------------S--S-S----------------------------S------
---------------------------S----------------------------------------------------
-----------S-----------------S-------------S-----S------------------S-----------
---------------------------------------S--------S------------------S---------S--
---------------------------S-------S------S----------------------------------S--
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-------------------S-S----------------------------------------------------------
-------------------------------------------S------------------------------S-----
-------------------S---------------------S-----------------------------SS----S-S
-------------------------------S--------SSSSSS-----------------------S--------S-
-------S---------------------------------------------------------------S--------
---------------------------------------------SS-----------------------S---------
-S------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
----------------S--------------------S-------S----------------S-----------------
------------------------SSSS----------------------------------------------------
-------------------------------S-------SSS-------------------------S------------
-----S----S-S------------------S-----------------S------S-----------------------
---------------------------------------------------------------------------S----
---------------------S----------------------------------------------------------
------------------------------S--S----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----------------------------------------------------------------S-S------------
-------------------------------------------------S----SSS----S------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SSSSSS-----S-----------------S--------------
---------------------------------S--------------------------------------------S-
-S----------------------------------------------------------SS-S-S--S-----------
----------S-------------S----SSS------------------------------------------------
-----------------------------------------S--SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_468
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------------------------------------------------TACTACAGTGGTGCTTGCCG------------
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>reverse_1468
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---------------------------GGGGGCAACAGTAGCAAGAT---------------------------------
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>forward_537
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-------------------------------------AAGTGAGTGGAGGAGGAGCT-----------------------
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>reverse_2693
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----------------------------------------------------GGTGGCTACCAGAAGGGAAC--------
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>forward_2365
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-------------------------ATAGACCGATGCTGGCACTG-----------------------------------
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>reverse_4322
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-CGTGACTCCGTGAGCTATCA-----------------------------------------------------------
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--------------------------------------------------------
