Multiple sequence alignment - TraesCS3D01G416100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G416100 chr3D 100.000 4340 0 0 1 4340 527552784 527557123 0.000000e+00 8015
1 TraesCS3D01G416100 chr3D 97.436 273 6 1 2 273 466912068 466912340 8.500000e-127 464
2 TraesCS3D01G416100 chr3A 92.103 3951 175 45 484 4340 661980845 661976938 0.000000e+00 5441
3 TraesCS3D01G416100 chr3B 93.987 3276 146 21 443 3681 697476815 697473554 0.000000e+00 4911
4 TraesCS3D01G416100 chr3B 83.896 652 53 29 3717 4340 697473554 697472927 3.760000e-160 575
5 TraesCS3D01G416100 chr3B 90.741 162 15 0 273 434 161794381 161794542 2.630000e-52 217
6 TraesCS3D01G416100 chr5D 88.383 878 67 12 1528 2402 545452302 545451457 0.000000e+00 1024
7 TraesCS3D01G416100 chr5D 97.436 273 7 0 1 273 552303798 552304070 2.360000e-127 466
8 TraesCS3D01G416100 chr7D 97.436 273 7 0 1 273 47778339 47778611 2.360000e-127 466
9 TraesCS3D01G416100 chr7D 91.975 162 13 0 273 434 426819452 426819613 1.210000e-55 228
10 TraesCS3D01G416100 chr7D 91.358 162 14 0 273 434 390070721 390070882 5.650000e-54 222
11 TraesCS3D01G416100 chr6D 97.436 273 7 0 1 273 90615356 90615628 2.360000e-127 466
12 TraesCS3D01G416100 chr6D 97.080 274 7 1 1 273 126093890 126093617 1.100000e-125 460
13 TraesCS3D01G416100 chr6D 96.416 279 9 1 1 278 126072627 126072349 3.960000e-125 459
14 TraesCS3D01G416100 chr6D 90.964 166 15 0 272 437 386907271 386907106 1.570000e-54 224
15 TraesCS3D01G416100 chr6D 88.957 163 18 0 272 434 343954870 343955032 7.360000e-48 202
16 TraesCS3D01G416100 chr4D 97.778 270 6 0 5 274 363840385 363840116 2.360000e-127 466
17 TraesCS3D01G416100 chr4D 87.805 164 20 0 272 435 13340324 13340161 4.430000e-45 193
18 TraesCS3D01G416100 chr2D 97.436 273 7 0 1 273 473565795 473566067 2.360000e-127 466
19 TraesCS3D01G416100 chr2D 90.303 165 16 0 273 437 571773986 571773822 2.630000e-52 217
20 TraesCS3D01G416100 chr2D 87.500 168 19 2 269 434 159343404 159343237 4.430000e-45 193
21 TraesCS3D01G416100 chr1D 97.436 273 7 0 1 273 105175148 105175420 2.360000e-127 466
22 TraesCS3D01G416100 chr1D 90.909 165 15 0 273 437 400032066 400031902 5.650000e-54 222
23 TraesCS3D01G416100 chr1D 91.358 162 14 0 273 434 426441352 426441513 5.650000e-54 222
24 TraesCS3D01G416100 chr1D 91.358 162 14 0 273 434 476088191 476088030 5.650000e-54 222
25 TraesCS3D01G416100 chr6A 90.741 162 15 0 273 434 14065740 14065901 2.630000e-52 217
26 TraesCS3D01G416100 chr5B 88.554 166 19 0 272 437 303328552 303328387 7.360000e-48 202
27 TraesCS3D01G416100 chr1B 88.554 166 18 1 270 434 644574266 644574431 2.650000e-47 200
28 TraesCS3D01G416100 chr1B 88.554 166 18 1 270 434 644576472 644576637 2.650000e-47 200
29 TraesCS3D01G416100 chr1A 88.889 162 18 0 272 433 521876286 521876447 2.650000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G416100 chr3D 527552784 527557123 4339 False 8015 8015 100.0000 1 4340 1 chr3D.!!$F2 4339
1 TraesCS3D01G416100 chr3A 661976938 661980845 3907 True 5441 5441 92.1030 484 4340 1 chr3A.!!$R1 3856
2 TraesCS3D01G416100 chr3B 697472927 697476815 3888 True 2743 4911 88.9415 443 4340 2 chr3B.!!$R1 3897
3 TraesCS3D01G416100 chr5D 545451457 545452302 845 True 1024 1024 88.3830 1528 2402 1 chr5D.!!$R1 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.033503 TCTACTCGCTCCCACCATGA 60.034 55.0 0.00 0.0 0.0 3.07 F
339 340 0.035598 TGCCGGGAATGAGTCGAAAA 59.964 50.0 2.18 0.0 0.0 2.29 F
1224 1268 0.103208 CGCTGATCCACACCTACTCC 59.897 60.0 0.00 0.0 0.0 3.85 F
1225 1269 0.103208 GCTGATCCACACCTACTCCG 59.897 60.0 0.00 0.0 0.0 4.63 F
1890 1934 0.248907 CCGTGGTGCCGTACTATCTG 60.249 60.0 0.00 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 1964 1.816537 GACGATGCCAGCCTCTGTA 59.183 57.895 0.00 0.0 0.00 2.74 R
2046 2090 2.017783 GTTGCCGAGACGCACGTTA 61.018 57.895 0.00 0.0 38.83 3.18 R
2625 2672 0.911769 TGCCGGAGAGGATGTTGAAT 59.088 50.000 5.05 0.0 45.00 2.57 R
2893 2940 2.149578 CAGGTTGCAGAGGAAGTTGAG 58.850 52.381 0.00 0.0 0.00 3.02 R
3459 3543 0.321653 ATGGAACGCAACTCTGTCCC 60.322 55.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.935352 CACCCATAGAGAAAGGAGAGAG 57.065 50.000 0.00 0.00 0.00 3.20
22 23 3.069443 CACCCATAGAGAAAGGAGAGAGC 59.931 52.174 0.00 0.00 0.00 4.09
23 24 3.052186 ACCCATAGAGAAAGGAGAGAGCT 60.052 47.826 0.00 0.00 0.00 4.09
24 25 4.169068 ACCCATAGAGAAAGGAGAGAGCTA 59.831 45.833 0.00 0.00 0.00 3.32
25 26 4.766891 CCCATAGAGAAAGGAGAGAGCTAG 59.233 50.000 0.00 0.00 0.00 3.42
26 27 4.218417 CCATAGAGAAAGGAGAGAGCTAGC 59.782 50.000 6.62 6.62 0.00 3.42
27 28 2.666317 AGAGAAAGGAGAGAGCTAGCC 58.334 52.381 12.13 2.81 0.00 3.93
28 29 2.244769 AGAGAAAGGAGAGAGCTAGCCT 59.755 50.000 12.13 8.35 0.00 4.58
29 30 3.031013 GAGAAAGGAGAGAGCTAGCCTT 58.969 50.000 12.13 3.31 42.27 4.35
30 31 4.079443 AGAGAAAGGAGAGAGCTAGCCTTA 60.079 45.833 12.13 0.00 39.71 2.69
31 32 3.958147 AGAAAGGAGAGAGCTAGCCTTAC 59.042 47.826 12.13 6.58 39.71 2.34
32 33 3.680777 AAGGAGAGAGCTAGCCTTACT 57.319 47.619 12.13 6.07 38.88 2.24
33 34 3.680777 AGGAGAGAGCTAGCCTTACTT 57.319 47.619 12.13 0.00 0.00 2.24
34 35 3.989056 AGGAGAGAGCTAGCCTTACTTT 58.011 45.455 12.13 1.45 0.00 2.66
35 36 3.958147 AGGAGAGAGCTAGCCTTACTTTC 59.042 47.826 12.13 10.27 0.00 2.62
36 37 3.958147 GGAGAGAGCTAGCCTTACTTTCT 59.042 47.826 12.13 5.53 0.00 2.52
37 38 4.404394 GGAGAGAGCTAGCCTTACTTTCTT 59.596 45.833 12.13 0.00 0.00 2.52
38 39 5.451381 GGAGAGAGCTAGCCTTACTTTCTTC 60.451 48.000 12.13 0.00 0.00 2.87
39 40 4.404394 AGAGAGCTAGCCTTACTTTCTTCC 59.596 45.833 12.13 0.00 0.00 3.46
40 41 4.097418 AGAGCTAGCCTTACTTTCTTCCA 58.903 43.478 12.13 0.00 0.00 3.53
41 42 4.081365 AGAGCTAGCCTTACTTTCTTCCAC 60.081 45.833 12.13 0.00 0.00 4.02
42 43 3.055021 AGCTAGCCTTACTTTCTTCCACC 60.055 47.826 12.13 0.00 0.00 4.61
43 44 3.055021 GCTAGCCTTACTTTCTTCCACCT 60.055 47.826 2.29 0.00 0.00 4.00
44 45 3.704800 AGCCTTACTTTCTTCCACCTC 57.295 47.619 0.00 0.00 0.00 3.85
45 46 3.252351 AGCCTTACTTTCTTCCACCTCT 58.748 45.455 0.00 0.00 0.00 3.69
46 47 4.426704 AGCCTTACTTTCTTCCACCTCTA 58.573 43.478 0.00 0.00 0.00 2.43
47 48 4.468153 AGCCTTACTTTCTTCCACCTCTAG 59.532 45.833 0.00 0.00 0.00 2.43
48 49 4.760878 CCTTACTTTCTTCCACCTCTAGC 58.239 47.826 0.00 0.00 0.00 3.42
49 50 4.223032 CCTTACTTTCTTCCACCTCTAGCA 59.777 45.833 0.00 0.00 0.00 3.49
50 51 5.280011 CCTTACTTTCTTCCACCTCTAGCAA 60.280 44.000 0.00 0.00 0.00 3.91
51 52 4.706842 ACTTTCTTCCACCTCTAGCAAA 57.293 40.909 0.00 0.00 0.00 3.68
52 53 4.390264 ACTTTCTTCCACCTCTAGCAAAC 58.610 43.478 0.00 0.00 0.00 2.93
53 54 4.141482 ACTTTCTTCCACCTCTAGCAAACA 60.141 41.667 0.00 0.00 0.00 2.83
54 55 3.685139 TCTTCCACCTCTAGCAAACAG 57.315 47.619 0.00 0.00 0.00 3.16
55 56 2.079925 CTTCCACCTCTAGCAAACAGC 58.920 52.381 0.00 0.00 46.19 4.40
76 77 3.877559 CTCAAGGAGCACCATTGTATCA 58.122 45.455 2.07 0.00 38.94 2.15
77 78 3.609853 TCAAGGAGCACCATTGTATCAC 58.390 45.455 2.07 0.00 38.94 3.06
78 79 3.264193 TCAAGGAGCACCATTGTATCACT 59.736 43.478 2.07 0.00 38.94 3.41
79 80 4.469586 TCAAGGAGCACCATTGTATCACTA 59.530 41.667 2.07 0.00 38.94 2.74
80 81 4.679373 AGGAGCACCATTGTATCACTAG 57.321 45.455 2.07 0.00 38.94 2.57
81 82 4.033709 AGGAGCACCATTGTATCACTAGT 58.966 43.478 2.07 0.00 38.94 2.57
82 83 4.122776 GGAGCACCATTGTATCACTAGTG 58.877 47.826 17.17 17.17 35.97 2.74
83 84 3.951979 GCACCATTGTATCACTAGTGC 57.048 47.619 18.45 5.03 41.86 4.40
84 85 2.614057 GCACCATTGTATCACTAGTGCC 59.386 50.000 18.45 8.79 42.44 5.01
85 86 3.682718 GCACCATTGTATCACTAGTGCCT 60.683 47.826 18.45 10.17 42.44 4.75
86 87 4.517285 CACCATTGTATCACTAGTGCCTT 58.483 43.478 18.45 7.88 0.00 4.35
87 88 5.670485 CACCATTGTATCACTAGTGCCTTA 58.330 41.667 18.45 6.92 0.00 2.69
88 89 5.755375 CACCATTGTATCACTAGTGCCTTAG 59.245 44.000 18.45 4.58 0.00 2.18
89 90 5.425539 ACCATTGTATCACTAGTGCCTTAGT 59.574 40.000 18.45 5.10 34.26 2.24
97 98 4.065321 ACTAGTGCCTTAGTGATCATGC 57.935 45.455 0.00 0.00 32.78 4.06
98 99 1.945387 AGTGCCTTAGTGATCATGCG 58.055 50.000 0.00 0.00 0.00 4.73
99 100 0.940126 GTGCCTTAGTGATCATGCGG 59.060 55.000 0.00 0.00 0.00 5.69
100 101 0.829990 TGCCTTAGTGATCATGCGGA 59.170 50.000 0.00 0.00 0.00 5.54
101 102 1.202568 TGCCTTAGTGATCATGCGGAG 60.203 52.381 0.00 0.00 0.00 4.63
102 103 1.069204 GCCTTAGTGATCATGCGGAGA 59.931 52.381 0.00 0.00 0.00 3.71
103 104 2.748605 CCTTAGTGATCATGCGGAGAC 58.251 52.381 0.00 0.00 0.00 3.36
104 105 2.546795 CCTTAGTGATCATGCGGAGACC 60.547 54.545 0.00 0.00 0.00 3.85
105 106 1.040646 TAGTGATCATGCGGAGACCC 58.959 55.000 0.00 0.00 0.00 4.46
106 107 1.227674 GTGATCATGCGGAGACCCC 60.228 63.158 0.00 0.00 0.00 4.95
115 116 4.154347 GGAGACCCCGCAGAGCAG 62.154 72.222 0.00 0.00 0.00 4.24
116 117 4.154347 GAGACCCCGCAGAGCAGG 62.154 72.222 0.00 0.00 0.00 4.85
117 118 4.704103 AGACCCCGCAGAGCAGGA 62.704 66.667 2.47 0.00 0.00 3.86
118 119 4.459089 GACCCCGCAGAGCAGGAC 62.459 72.222 2.47 0.00 0.00 3.85
120 121 2.759973 CCCCGCAGAGCAGGACTA 60.760 66.667 0.00 0.00 0.00 2.59
121 122 2.790791 CCCCGCAGAGCAGGACTAG 61.791 68.421 0.00 0.00 0.00 2.57
122 123 2.790791 CCCGCAGAGCAGGACTAGG 61.791 68.421 0.00 0.00 0.00 3.02
123 124 2.790791 CCGCAGAGCAGGACTAGGG 61.791 68.421 0.00 0.00 0.00 3.53
124 125 2.790791 CGCAGAGCAGGACTAGGGG 61.791 68.421 0.00 0.00 0.00 4.79
125 126 1.687493 GCAGAGCAGGACTAGGGGT 60.687 63.158 0.00 0.00 0.00 4.95
126 127 1.965754 GCAGAGCAGGACTAGGGGTG 61.966 65.000 0.00 0.00 0.00 4.61
127 128 0.616111 CAGAGCAGGACTAGGGGTGT 60.616 60.000 0.00 0.00 0.00 4.16
128 129 0.117340 AGAGCAGGACTAGGGGTGTT 59.883 55.000 0.00 0.00 0.00 3.32
129 130 1.361543 AGAGCAGGACTAGGGGTGTTA 59.638 52.381 0.00 0.00 0.00 2.41
130 131 2.022918 AGAGCAGGACTAGGGGTGTTAT 60.023 50.000 0.00 0.00 0.00 1.89
131 132 2.365941 GAGCAGGACTAGGGGTGTTATC 59.634 54.545 0.00 0.00 0.00 1.75
132 133 2.022918 AGCAGGACTAGGGGTGTTATCT 60.023 50.000 0.00 0.00 0.00 1.98
133 134 2.365941 GCAGGACTAGGGGTGTTATCTC 59.634 54.545 0.00 0.00 0.00 2.75
134 135 2.966516 CAGGACTAGGGGTGTTATCTCC 59.033 54.545 0.00 0.00 0.00 3.71
135 136 2.590611 AGGACTAGGGGTGTTATCTCCA 59.409 50.000 0.00 0.00 0.00 3.86
136 137 2.699321 GGACTAGGGGTGTTATCTCCAC 59.301 54.545 0.00 0.00 0.00 4.02
137 138 2.361438 GACTAGGGGTGTTATCTCCACG 59.639 54.545 0.00 0.00 35.94 4.94
138 139 1.687123 CTAGGGGTGTTATCTCCACGG 59.313 57.143 0.00 0.00 35.94 4.94
139 140 0.042131 AGGGGTGTTATCTCCACGGA 59.958 55.000 0.00 0.00 35.94 4.69
140 141 0.464452 GGGGTGTTATCTCCACGGAG 59.536 60.000 6.77 6.77 43.21 4.63
154 155 3.787001 GGAGAGCCCCGAACCTGG 61.787 72.222 0.00 0.00 0.00 4.45
163 164 1.817357 CCCGAACCTGGGTAAAGTTC 58.183 55.000 0.00 0.00 44.76 3.01
166 167 1.162698 GAACCTGGGTAAAGTTCGCC 58.837 55.000 0.00 0.00 31.45 5.54
167 168 0.604511 AACCTGGGTAAAGTTCGCCG 60.605 55.000 0.00 0.00 0.00 6.46
168 169 1.743995 CCTGGGTAAAGTTCGCCGG 60.744 63.158 0.00 0.00 0.00 6.13
169 170 2.358984 TGGGTAAAGTTCGCCGGC 60.359 61.111 19.07 19.07 0.00 6.13
170 171 2.358984 GGGTAAAGTTCGCCGGCA 60.359 61.111 28.98 11.20 0.00 5.69
171 172 1.747745 GGGTAAAGTTCGCCGGCAT 60.748 57.895 28.98 5.86 0.00 4.40
172 173 1.310216 GGGTAAAGTTCGCCGGCATT 61.310 55.000 28.98 14.70 0.00 3.56
173 174 0.098200 GGTAAAGTTCGCCGGCATTC 59.902 55.000 28.98 15.24 0.00 2.67
174 175 0.247537 GTAAAGTTCGCCGGCATTCG 60.248 55.000 28.98 10.38 38.88 3.34
175 176 0.671163 TAAAGTTCGCCGGCATTCGT 60.671 50.000 28.98 10.72 37.11 3.85
176 177 2.182614 AAAGTTCGCCGGCATTCGTG 62.183 55.000 28.98 9.08 37.11 4.35
177 178 3.419759 GTTCGCCGGCATTCGTGT 61.420 61.111 28.98 0.00 37.11 4.49
178 179 3.115892 TTCGCCGGCATTCGTGTC 61.116 61.111 28.98 0.00 37.11 3.67
179 180 3.583276 TTCGCCGGCATTCGTGTCT 62.583 57.895 28.98 0.00 37.11 3.41
180 181 2.202690 CGCCGGCATTCGTGTCTA 60.203 61.111 28.98 0.00 37.11 2.59
181 182 2.514013 CGCCGGCATTCGTGTCTAC 61.514 63.158 28.98 0.00 37.11 2.59
191 192 3.564455 CGTGTCTACGCCTTATCCC 57.436 57.895 0.00 0.00 44.11 3.85
192 193 0.317603 CGTGTCTACGCCTTATCCCG 60.318 60.000 0.00 0.00 44.11 5.14
193 194 0.596859 GTGTCTACGCCTTATCCCGC 60.597 60.000 0.00 0.00 0.00 6.13
194 195 0.754217 TGTCTACGCCTTATCCCGCT 60.754 55.000 0.00 0.00 0.00 5.52
195 196 0.388294 GTCTACGCCTTATCCCGCTT 59.612 55.000 0.00 0.00 0.00 4.68
196 197 0.672342 TCTACGCCTTATCCCGCTTC 59.328 55.000 0.00 0.00 0.00 3.86
197 198 0.319641 CTACGCCTTATCCCGCTTCC 60.320 60.000 0.00 0.00 0.00 3.46
198 199 1.044231 TACGCCTTATCCCGCTTCCA 61.044 55.000 0.00 0.00 0.00 3.53
199 200 1.595382 CGCCTTATCCCGCTTCCAG 60.595 63.158 0.00 0.00 0.00 3.86
200 201 1.227973 GCCTTATCCCGCTTCCAGG 60.228 63.158 0.00 0.00 0.00 4.45
201 202 1.227973 CCTTATCCCGCTTCCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
202 203 1.526887 CTTATCCCGCTTCCAGGCA 59.473 57.895 0.00 0.00 0.00 4.75
203 204 0.815615 CTTATCCCGCTTCCAGGCAC 60.816 60.000 0.00 0.00 0.00 5.01
204 205 2.265467 TTATCCCGCTTCCAGGCACC 62.265 60.000 0.00 0.00 0.00 5.01
224 225 4.666728 CGACGTTCTACTCGCTCC 57.333 61.111 0.00 0.00 0.00 4.70
225 226 1.062206 CGACGTTCTACTCGCTCCC 59.938 63.158 0.00 0.00 0.00 4.30
226 227 1.642037 CGACGTTCTACTCGCTCCCA 61.642 60.000 0.00 0.00 0.00 4.37
227 228 0.179169 GACGTTCTACTCGCTCCCAC 60.179 60.000 0.00 0.00 0.00 4.61
228 229 1.139095 CGTTCTACTCGCTCCCACC 59.861 63.158 0.00 0.00 0.00 4.61
229 230 1.592400 CGTTCTACTCGCTCCCACCA 61.592 60.000 0.00 0.00 0.00 4.17
230 231 0.824759 GTTCTACTCGCTCCCACCAT 59.175 55.000 0.00 0.00 0.00 3.55
231 232 0.824109 TTCTACTCGCTCCCACCATG 59.176 55.000 0.00 0.00 0.00 3.66
232 233 0.033503 TCTACTCGCTCCCACCATGA 60.034 55.000 0.00 0.00 0.00 3.07
233 234 1.043816 CTACTCGCTCCCACCATGAT 58.956 55.000 0.00 0.00 0.00 2.45
234 235 2.158519 TCTACTCGCTCCCACCATGATA 60.159 50.000 0.00 0.00 0.00 2.15
235 236 1.496060 ACTCGCTCCCACCATGATAA 58.504 50.000 0.00 0.00 0.00 1.75
236 237 1.414181 ACTCGCTCCCACCATGATAAG 59.586 52.381 0.00 0.00 0.00 1.73
237 238 0.106708 TCGCTCCCACCATGATAAGC 59.893 55.000 0.00 0.00 0.00 3.09
238 239 0.886490 CGCTCCCACCATGATAAGCC 60.886 60.000 0.00 0.00 0.00 4.35
239 240 0.183492 GCTCCCACCATGATAAGCCA 59.817 55.000 0.00 0.00 0.00 4.75
240 241 1.202976 GCTCCCACCATGATAAGCCAT 60.203 52.381 0.00 0.00 0.00 4.40
241 242 2.787994 CTCCCACCATGATAAGCCATC 58.212 52.381 0.00 0.00 0.00 3.51
242 243 1.425066 TCCCACCATGATAAGCCATCC 59.575 52.381 0.00 0.00 32.09 3.51
243 244 1.145531 CCCACCATGATAAGCCATCCA 59.854 52.381 0.00 0.00 32.09 3.41
244 245 2.225192 CCCACCATGATAAGCCATCCAT 60.225 50.000 0.00 0.00 32.09 3.41
245 246 3.503365 CCACCATGATAAGCCATCCATT 58.497 45.455 0.00 0.00 32.09 3.16
246 247 3.257375 CCACCATGATAAGCCATCCATTG 59.743 47.826 0.00 0.00 32.09 2.82
257 258 1.200716 CCATCCATTGGCATATGTCGC 59.799 52.381 2.28 0.00 39.09 5.19
258 259 1.881324 CATCCATTGGCATATGTCGCA 59.119 47.619 2.28 0.00 0.00 5.10
259 260 1.308047 TCCATTGGCATATGTCGCAC 58.692 50.000 2.28 0.00 0.00 5.34
260 261 1.134128 TCCATTGGCATATGTCGCACT 60.134 47.619 2.28 0.00 0.00 4.40
261 262 1.265095 CCATTGGCATATGTCGCACTC 59.735 52.381 2.28 0.00 0.00 3.51
262 263 1.941975 CATTGGCATATGTCGCACTCA 59.058 47.619 2.28 0.00 0.00 3.41
263 264 2.106477 TTGGCATATGTCGCACTCAA 57.894 45.000 2.28 0.00 0.00 3.02
264 265 1.368641 TGGCATATGTCGCACTCAAC 58.631 50.000 2.28 0.00 0.00 3.18
265 266 0.657840 GGCATATGTCGCACTCAACC 59.342 55.000 4.29 0.00 0.00 3.77
266 267 0.657840 GCATATGTCGCACTCAACCC 59.342 55.000 4.29 0.00 0.00 4.11
267 268 1.299541 CATATGTCGCACTCAACCCC 58.700 55.000 0.00 0.00 0.00 4.95
268 269 0.180406 ATATGTCGCACTCAACCCCC 59.820 55.000 0.00 0.00 0.00 5.40
269 270 2.233605 TATGTCGCACTCAACCCCCG 62.234 60.000 0.00 0.00 0.00 5.73
270 271 3.998672 GTCGCACTCAACCCCCGA 61.999 66.667 0.00 0.00 0.00 5.14
271 272 3.998672 TCGCACTCAACCCCCGAC 61.999 66.667 0.00 0.00 0.00 4.79
272 273 4.308458 CGCACTCAACCCCCGACA 62.308 66.667 0.00 0.00 0.00 4.35
273 274 2.358737 GCACTCAACCCCCGACAG 60.359 66.667 0.00 0.00 0.00 3.51
274 275 2.358737 CACTCAACCCCCGACAGC 60.359 66.667 0.00 0.00 0.00 4.40
275 276 3.637273 ACTCAACCCCCGACAGCC 61.637 66.667 0.00 0.00 0.00 4.85
276 277 4.410400 CTCAACCCCCGACAGCCC 62.410 72.222 0.00 0.00 0.00 5.19
294 295 2.877582 GTACGCGCGATGTCCGTT 60.878 61.111 39.36 14.32 41.15 4.44
295 296 2.126385 TACGCGCGATGTCCGTTT 60.126 55.556 39.36 13.47 41.15 3.60
296 297 2.153945 TACGCGCGATGTCCGTTTC 61.154 57.895 39.36 0.00 41.15 2.78
297 298 2.799488 TACGCGCGATGTCCGTTTCA 62.799 55.000 39.36 2.96 41.15 2.69
298 299 2.095843 GCGCGATGTCCGTTTCAC 59.904 61.111 12.10 0.00 41.15 3.18
299 300 2.776072 CGCGATGTCCGTTTCACC 59.224 61.111 0.00 0.00 41.15 4.02
300 301 2.736682 CGCGATGTCCGTTTCACCC 61.737 63.158 0.00 0.00 41.15 4.61
301 302 2.396157 GCGATGTCCGTTTCACCCC 61.396 63.158 0.00 0.00 41.15 4.95
302 303 1.004320 CGATGTCCGTTTCACCCCA 60.004 57.895 0.00 0.00 0.00 4.96
303 304 0.604243 CGATGTCCGTTTCACCCCAA 60.604 55.000 0.00 0.00 0.00 4.12
304 305 1.611519 GATGTCCGTTTCACCCCAAA 58.388 50.000 0.00 0.00 0.00 3.28
305 306 1.268625 GATGTCCGTTTCACCCCAAAC 59.731 52.381 0.00 0.00 33.57 2.93
306 307 0.256464 TGTCCGTTTCACCCCAAACT 59.744 50.000 0.00 0.00 34.59 2.66
307 308 0.949397 GTCCGTTTCACCCCAAACTC 59.051 55.000 0.00 0.00 34.59 3.01
308 309 0.533308 TCCGTTTCACCCCAAACTCG 60.533 55.000 0.00 0.00 34.59 4.18
309 310 1.512156 CCGTTTCACCCCAAACTCGG 61.512 60.000 0.00 0.00 34.59 4.63
310 311 1.658114 GTTTCACCCCAAACTCGGC 59.342 57.895 0.00 0.00 34.03 5.54
311 312 1.894756 TTTCACCCCAAACTCGGCG 60.895 57.895 0.00 0.00 0.00 6.46
314 315 4.572571 ACCCCAAACTCGGCGCAA 62.573 61.111 10.83 0.00 0.00 4.85
315 316 3.737172 CCCCAAACTCGGCGCAAG 61.737 66.667 10.83 8.81 43.44 4.01
316 317 2.978010 CCCAAACTCGGCGCAAGT 60.978 61.111 10.83 9.58 41.68 3.16
317 318 2.551912 CCCAAACTCGGCGCAAGTT 61.552 57.895 18.46 18.46 38.59 2.66
318 319 1.358759 CCAAACTCGGCGCAAGTTT 59.641 52.632 25.63 25.63 45.41 2.66
320 321 2.103410 AAACTCGGCGCAAGTTTGT 58.897 47.368 28.61 13.75 43.46 2.83
321 322 0.248458 AAACTCGGCGCAAGTTTGTG 60.248 50.000 28.61 8.72 43.46 3.33
327 328 3.283684 CGCAAGTTTGTGCCGGGA 61.284 61.111 2.18 0.00 41.73 5.14
328 329 2.840066 CGCAAGTTTGTGCCGGGAA 61.840 57.895 2.18 0.00 41.73 3.97
329 330 1.665442 GCAAGTTTGTGCCGGGAAT 59.335 52.632 2.18 0.00 38.66 3.01
330 331 0.667184 GCAAGTTTGTGCCGGGAATG 60.667 55.000 2.18 0.00 38.66 2.67
331 332 0.958091 CAAGTTTGTGCCGGGAATGA 59.042 50.000 2.18 0.00 0.00 2.57
332 333 1.068333 CAAGTTTGTGCCGGGAATGAG 60.068 52.381 2.18 0.00 0.00 2.90
333 334 0.110486 AGTTTGTGCCGGGAATGAGT 59.890 50.000 2.18 0.00 0.00 3.41
334 335 0.521735 GTTTGTGCCGGGAATGAGTC 59.478 55.000 2.18 0.00 0.00 3.36
335 336 0.953471 TTTGTGCCGGGAATGAGTCG 60.953 55.000 2.18 0.00 0.00 4.18
336 337 1.822114 TTGTGCCGGGAATGAGTCGA 61.822 55.000 2.18 0.00 0.00 4.20
337 338 1.079405 GTGCCGGGAATGAGTCGAA 60.079 57.895 2.18 0.00 0.00 3.71
338 339 0.672401 GTGCCGGGAATGAGTCGAAA 60.672 55.000 2.18 0.00 0.00 3.46
339 340 0.035598 TGCCGGGAATGAGTCGAAAA 59.964 50.000 2.18 0.00 0.00 2.29
340 341 0.446616 GCCGGGAATGAGTCGAAAAC 59.553 55.000 2.18 0.00 0.00 2.43
341 342 0.719465 CCGGGAATGAGTCGAAAACG 59.281 55.000 0.00 0.00 0.00 3.60
342 343 0.719465 CGGGAATGAGTCGAAAACGG 59.281 55.000 0.00 0.00 0.00 4.44
343 344 1.670674 CGGGAATGAGTCGAAAACGGA 60.671 52.381 0.00 0.00 0.00 4.69
344 345 1.730612 GGGAATGAGTCGAAAACGGAC 59.269 52.381 0.00 0.00 34.62 4.79
345 346 1.389106 GGAATGAGTCGAAAACGGACG 59.611 52.381 0.00 0.00 39.38 4.79
346 347 2.322161 GAATGAGTCGAAAACGGACGA 58.678 47.619 0.00 0.00 39.38 4.20
347 348 2.427232 ATGAGTCGAAAACGGACGAA 57.573 45.000 0.00 0.00 40.12 3.85
348 349 2.206815 TGAGTCGAAAACGGACGAAA 57.793 45.000 0.00 0.00 40.12 3.46
349 350 2.746269 TGAGTCGAAAACGGACGAAAT 58.254 42.857 0.00 0.00 40.12 2.17
350 351 2.727798 TGAGTCGAAAACGGACGAAATC 59.272 45.455 0.00 0.00 40.12 2.17
351 352 2.064014 AGTCGAAAACGGACGAAATCC 58.936 47.619 0.00 0.00 45.20 3.01
360 361 2.825086 GGACGAAATCCGGACATTTG 57.175 50.000 6.12 11.94 43.93 2.32
361 362 2.081462 GGACGAAATCCGGACATTTGT 58.919 47.619 19.73 19.73 43.93 2.83
362 363 2.095372 GGACGAAATCCGGACATTTGTC 59.905 50.000 28.56 28.56 43.93 3.18
371 372 1.883021 GACATTTGTCCGCTTGGGG 59.117 57.895 0.00 0.00 39.07 4.96
372 373 2.212900 GACATTTGTCCGCTTGGGGC 62.213 60.000 0.00 0.00 42.42 5.80
373 374 2.679996 ATTTGTCCGCTTGGGGCC 60.680 61.111 0.00 0.00 40.87 5.80
393 394 3.806422 GCGTTGGGCCGCGTTATT 61.806 61.111 18.89 0.00 44.69 1.40
394 395 2.401990 CGTTGGGCCGCGTTATTC 59.598 61.111 4.92 0.00 0.00 1.75
395 396 2.401990 GTTGGGCCGCGTTATTCG 59.598 61.111 4.92 0.00 43.12 3.34
396 397 2.047083 TTGGGCCGCGTTATTCGT 60.047 55.556 4.92 0.00 42.13 3.85
397 398 2.101835 TTGGGCCGCGTTATTCGTC 61.102 57.895 4.92 0.00 42.13 4.20
398 399 3.267118 GGGCCGCGTTATTCGTCC 61.267 66.667 4.92 0.00 42.13 4.79
399 400 3.623330 GGCCGCGTTATTCGTCCG 61.623 66.667 4.92 0.00 42.13 4.79
400 401 2.882301 GCCGCGTTATTCGTCCGT 60.882 61.111 4.92 0.00 42.13 4.69
401 402 2.447070 GCCGCGTTATTCGTCCGTT 61.447 57.895 4.92 0.00 42.13 4.44
402 403 1.627424 CCGCGTTATTCGTCCGTTC 59.373 57.895 4.92 0.00 42.13 3.95
403 404 0.799534 CCGCGTTATTCGTCCGTTCT 60.800 55.000 4.92 0.00 42.13 3.01
404 405 1.531677 CCGCGTTATTCGTCCGTTCTA 60.532 52.381 4.92 0.00 42.13 2.10
405 406 1.510338 CGCGTTATTCGTCCGTTCTAC 59.490 52.381 0.00 0.00 42.13 2.59
406 407 1.848608 GCGTTATTCGTCCGTTCTACC 59.151 52.381 0.00 0.00 42.13 3.18
407 408 2.478539 GCGTTATTCGTCCGTTCTACCT 60.479 50.000 0.00 0.00 42.13 3.08
408 409 3.357897 CGTTATTCGTCCGTTCTACCTC 58.642 50.000 0.00 0.00 34.52 3.85
409 410 3.357897 GTTATTCGTCCGTTCTACCTCG 58.642 50.000 0.00 0.00 0.00 4.63
410 411 1.742761 ATTCGTCCGTTCTACCTCGA 58.257 50.000 0.00 0.00 0.00 4.04
411 412 1.522668 TTCGTCCGTTCTACCTCGAA 58.477 50.000 0.00 0.00 35.51 3.71
412 413 0.798776 TCGTCCGTTCTACCTCGAAC 59.201 55.000 0.00 0.00 39.83 3.95
417 418 3.302968 GTTCTACCTCGAACGGACG 57.697 57.895 0.00 0.00 34.59 4.79
418 419 0.796113 GTTCTACCTCGAACGGACGC 60.796 60.000 0.00 0.00 34.59 5.19
419 420 1.926511 TTCTACCTCGAACGGACGCC 61.927 60.000 0.00 0.00 0.00 5.68
435 436 4.227134 CCGCCGGACAGGATGGAG 62.227 72.222 5.05 0.00 45.00 3.86
436 437 3.461773 CGCCGGACAGGATGGAGT 61.462 66.667 5.05 0.00 45.00 3.85
437 438 2.990479 GCCGGACAGGATGGAGTT 59.010 61.111 5.05 0.00 45.00 3.01
438 439 1.450312 GCCGGACAGGATGGAGTTG 60.450 63.158 5.05 0.00 45.00 3.16
439 440 1.221840 CCGGACAGGATGGAGTTGG 59.778 63.158 0.00 0.00 45.00 3.77
440 441 1.450312 CGGACAGGATGGAGTTGGC 60.450 63.158 0.00 0.00 43.62 4.52
441 442 1.077429 GGACAGGATGGAGTTGGCC 60.077 63.158 0.00 0.00 43.62 5.36
455 456 4.237724 GAGTTGGCCTTATCTTTGTTTGC 58.762 43.478 3.32 0.00 0.00 3.68
461 462 5.590259 TGGCCTTATCTTTGTTTGCTCTATC 59.410 40.000 3.32 0.00 0.00 2.08
462 463 5.825151 GGCCTTATCTTTGTTTGCTCTATCT 59.175 40.000 0.00 0.00 0.00 1.98
463 464 6.992715 GGCCTTATCTTTGTTTGCTCTATCTA 59.007 38.462 0.00 0.00 0.00 1.98
464 465 7.663493 GGCCTTATCTTTGTTTGCTCTATCTAT 59.337 37.037 0.00 0.00 0.00 1.98
465 466 9.061435 GCCTTATCTTTGTTTGCTCTATCTATT 57.939 33.333 0.00 0.00 0.00 1.73
481 482 7.685481 TCTATCTATTGTCTTGGTTTGTTCCA 58.315 34.615 0.00 0.00 35.49 3.53
482 483 8.328758 TCTATCTATTGTCTTGGTTTGTTCCAT 58.671 33.333 0.00 0.00 37.33 3.41
509 510 1.612950 TGGCGATTTCAACTGCAACAT 59.387 42.857 0.00 0.00 0.00 2.71
517 518 7.359097 GCGATTTCAACTGCAACATTTTTCATA 60.359 33.333 0.00 0.00 0.00 2.15
521 522 8.715191 TTCAACTGCAACATTTTTCATAGTTT 57.285 26.923 0.00 0.00 0.00 2.66
522 523 8.351495 TCAACTGCAACATTTTTCATAGTTTC 57.649 30.769 0.00 0.00 0.00 2.78
529 530 7.578736 GCAACATTTTTCATAGTTTCGTTTGTG 59.421 33.333 0.00 0.00 0.00 3.33
553 554 9.959775 GTGAAAAAGAAGATAATTACTCTGTCG 57.040 33.333 0.00 0.00 0.00 4.35
554 555 9.706691 TGAAAAAGAAGATAATTACTCTGTCGT 57.293 29.630 0.00 0.00 0.00 4.34
570 571 5.423015 TCTGTCGTAAGGTACTACTACCAG 58.577 45.833 1.95 0.00 44.75 4.00
575 576 4.156556 CGTAAGGTACTACTACCAGTGCAA 59.843 45.833 0.00 0.00 44.75 4.08
578 579 3.257624 AGGTACTACTACCAGTGCAACAC 59.742 47.826 0.00 0.00 44.75 3.32
648 651 1.917303 GTGACAGGCAAAAACAACACG 59.083 47.619 0.00 0.00 0.00 4.49
689 692 0.887387 TTTTTCTTCGAGTGGGGGCG 60.887 55.000 0.00 0.00 0.00 6.13
980 1015 2.739996 CCTGCTCCCCAATCTCGCT 61.740 63.158 0.00 0.00 0.00 4.93
1025 1060 4.172512 CCATCTGCTCCCGCTGCT 62.173 66.667 0.00 0.00 36.97 4.24
1026 1061 2.895865 CATCTGCTCCCGCTGCTG 60.896 66.667 0.00 0.00 36.97 4.41
1104 1148 1.143183 GTACATCGTGCGGGTGGAT 59.857 57.895 0.00 0.00 0.00 3.41
1224 1268 0.103208 CGCTGATCCACACCTACTCC 59.897 60.000 0.00 0.00 0.00 3.85
1225 1269 0.103208 GCTGATCCACACCTACTCCG 59.897 60.000 0.00 0.00 0.00 4.63
1227 1271 1.327690 TGATCCACACCTACTCCGCC 61.328 60.000 0.00 0.00 0.00 6.13
1230 1274 4.814294 CACACCTACTCCGCCGCC 62.814 72.222 0.00 0.00 0.00 6.13
1890 1934 0.248907 CCGTGGTGCCGTACTATCTG 60.249 60.000 0.00 0.00 0.00 2.90
1911 1955 3.459965 GCCATCGCAATTGGGGCA 61.460 61.111 21.01 4.59 44.01 5.36
2529 2576 1.209019 CCCCAATCTCCAGAGACACTG 59.791 57.143 0.00 0.00 45.36 3.66
2754 2801 1.188871 TCATGACCACGGCCTACACA 61.189 55.000 0.00 0.00 0.00 3.72
2779 2826 1.528076 AACAGCAACGGCACCATGA 60.528 52.632 0.00 0.00 44.61 3.07
2780 2827 1.795170 AACAGCAACGGCACCATGAC 61.795 55.000 0.00 0.00 44.61 3.06
2884 2931 3.896133 TCTACGACATCGCGCCCC 61.896 66.667 0.00 0.00 44.43 5.80
2885 2932 3.900892 CTACGACATCGCGCCCCT 61.901 66.667 0.00 0.00 44.43 4.79
2913 2960 2.149578 CTCAACTTCCTCTGCAACCTG 58.850 52.381 0.00 0.00 0.00 4.00
3018 3065 1.214589 CAACTACCCGTCCCTGTCG 59.785 63.158 0.00 0.00 0.00 4.35
3361 3408 2.126850 GCCGGCTCGTTGAAAAGC 60.127 61.111 22.15 0.00 37.80 3.51
3393 3467 0.179145 AGTTAACACGATCTCCGGCG 60.179 55.000 8.61 0.00 43.93 6.46
3401 3475 1.437772 CGATCTCCGGCGTGTAGACT 61.438 60.000 6.01 0.00 33.91 3.24
3422 3506 7.616313 AGACTACGTACTTACTACTAGTGGTT 58.384 38.462 17.69 2.18 0.00 3.67
3423 3507 8.750298 AGACTACGTACTTACTACTAGTGGTTA 58.250 37.037 17.69 7.57 0.00 2.85
3424 3508 9.535878 GACTACGTACTTACTACTAGTGGTTAT 57.464 37.037 17.69 6.13 0.00 1.89
3425 3509 9.319143 ACTACGTACTTACTACTAGTGGTTATG 57.681 37.037 17.69 11.35 0.00 1.90
3426 3510 9.534565 CTACGTACTTACTACTAGTGGTTATGA 57.465 37.037 17.69 0.00 0.00 2.15
3427 3511 8.970859 ACGTACTTACTACTAGTGGTTATGAT 57.029 34.615 17.69 2.42 0.00 2.45
3428 3512 9.050601 ACGTACTTACTACTAGTGGTTATGATC 57.949 37.037 17.69 4.13 0.00 2.92
3429 3513 9.049523 CGTACTTACTACTAGTGGTTATGATCA 57.950 37.037 17.69 0.00 0.00 2.92
3474 3567 0.468226 TCTTGGGACAGAGTTGCGTT 59.532 50.000 0.00 0.00 42.39 4.84
3486 3579 0.992802 GTTGCGTTCCATCTCGTCTC 59.007 55.000 0.00 0.00 0.00 3.36
3608 3723 7.480542 CACTAACAATGGCTACGAAAATTACAC 59.519 37.037 0.00 0.00 0.00 2.90
3685 3800 2.663196 GTACGCCTGGAGCCAAGT 59.337 61.111 0.00 0.00 38.78 3.16
3700 3815 2.693069 CCAAGTCTGGCTGTCAACTAG 58.307 52.381 0.00 0.00 35.39 2.57
3702 3817 1.270907 AGTCTGGCTGTCAACTAGGG 58.729 55.000 0.00 0.00 0.00 3.53
3704 3819 1.205893 GTCTGGCTGTCAACTAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
3707 3822 2.428890 CTGGCTGTCAACTAGGGAGTAG 59.571 54.545 0.00 0.00 33.58 2.57
3709 3824 2.623502 GGCTGTCAACTAGGGAGTAGGA 60.624 54.545 0.00 0.00 33.58 2.94
3710 3825 2.691011 GCTGTCAACTAGGGAGTAGGAG 59.309 54.545 0.00 0.00 33.58 3.69
3711 3826 2.691011 CTGTCAACTAGGGAGTAGGAGC 59.309 54.545 0.00 0.00 33.58 4.70
3712 3827 2.042569 TGTCAACTAGGGAGTAGGAGCA 59.957 50.000 0.00 0.00 33.58 4.26
3713 3828 3.301274 GTCAACTAGGGAGTAGGAGCAT 58.699 50.000 0.00 0.00 33.58 3.79
3714 3829 3.707102 GTCAACTAGGGAGTAGGAGCATT 59.293 47.826 0.00 0.00 33.58 3.56
3715 3830 3.961408 TCAACTAGGGAGTAGGAGCATTC 59.039 47.826 0.00 0.00 33.58 2.67
3716 3831 2.965562 ACTAGGGAGTAGGAGCATTCC 58.034 52.381 0.00 0.00 44.39 3.01
3720 3835 2.708325 AGGGAGTAGGAGCATTCCATTC 59.292 50.000 0.00 0.00 46.64 2.67
3734 3849 1.843206 TCCATTCCATTCCATCCACGA 59.157 47.619 0.00 0.00 0.00 4.35
3736 3851 3.650461 TCCATTCCATTCCATCCACGATA 59.350 43.478 0.00 0.00 0.00 2.92
3737 3852 3.753272 CCATTCCATTCCATCCACGATAC 59.247 47.826 0.00 0.00 0.00 2.24
3742 3857 3.006859 CCATTCCATCCACGATACTGCTA 59.993 47.826 0.00 0.00 0.00 3.49
3744 3859 5.105351 CCATTCCATCCACGATACTGCTATA 60.105 44.000 0.00 0.00 0.00 1.31
3745 3860 5.644977 TTCCATCCACGATACTGCTATAG 57.355 43.478 0.00 0.00 0.00 1.31
3746 3861 4.663334 TCCATCCACGATACTGCTATAGT 58.337 43.478 0.84 0.00 43.56 2.12
3747 3862 4.459337 TCCATCCACGATACTGCTATAGTG 59.541 45.833 0.84 0.00 40.65 2.74
3841 3956 7.600065 CAAGATCAATTTCAGACCACAAGATT 58.400 34.615 0.00 0.00 0.00 2.40
3851 3966 5.487488 TCAGACCACAAGATTAACCCATAGT 59.513 40.000 0.00 0.00 0.00 2.12
3852 3967 6.670464 TCAGACCACAAGATTAACCCATAGTA 59.330 38.462 0.00 0.00 0.00 1.82
3853 3968 6.761714 CAGACCACAAGATTAACCCATAGTAC 59.238 42.308 0.00 0.00 0.00 2.73
3872 3987 1.550524 ACTACATGCCAAGAGCTCGAA 59.449 47.619 8.37 0.00 44.23 3.71
3878 3994 2.350522 TGCCAAGAGCTCGAAATTCTC 58.649 47.619 8.37 0.00 44.23 2.87
3888 4004 3.077359 CTCGAAATTCTCCAAGTTGGCT 58.923 45.455 17.68 0.00 37.47 4.75
3894 4010 1.361204 TCTCCAAGTTGGCTCCATGA 58.639 50.000 17.68 5.44 37.47 3.07
4009 4125 1.180029 GTGAATGACAGGCCTGCATT 58.820 50.000 35.37 35.37 38.78 3.56
4013 4129 1.028330 ATGACAGGCCTGCATTGTCG 61.028 55.000 33.06 6.81 43.12 4.35
4019 4135 1.474077 AGGCCTGCATTGTCGATTTTC 59.526 47.619 3.11 0.00 0.00 2.29
4020 4136 1.202114 GGCCTGCATTGTCGATTTTCA 59.798 47.619 0.00 0.00 0.00 2.69
4030 4146 6.907212 GCATTGTCGATTTTCAGGTAGTTATG 59.093 38.462 0.00 0.00 0.00 1.90
4055 4171 5.091431 CAGTTAGCAACAGCTTCTTAATGC 58.909 41.667 0.00 0.00 39.77 3.56
4068 4198 5.520288 GCTTCTTAATGCTGTTATCACGAGA 59.480 40.000 0.00 0.00 0.00 4.04
4210 4340 4.396166 AGCAGCTGGTAATTATGTTGTGTC 59.604 41.667 18.63 0.00 0.00 3.67
4211 4341 4.438744 GCAGCTGGTAATTATGTTGTGTCC 60.439 45.833 17.12 0.00 0.00 4.02
4212 4342 4.699735 CAGCTGGTAATTATGTTGTGTCCA 59.300 41.667 5.57 0.00 0.00 4.02
4213 4343 5.182950 CAGCTGGTAATTATGTTGTGTCCAA 59.817 40.000 5.57 0.00 0.00 3.53
4239 4378 3.023735 GGTGGGGATTCAGGCCCT 61.024 66.667 0.00 0.00 45.30 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.069443 GCTCTCTCCTTTCTCTATGGGTG 59.931 52.174 0.00 0.00 0.00 4.61
1 2 3.052186 AGCTCTCTCCTTTCTCTATGGGT 60.052 47.826 0.00 0.00 0.00 4.51
2 3 3.575805 AGCTCTCTCCTTTCTCTATGGG 58.424 50.000 0.00 0.00 0.00 4.00
3 4 4.218417 GCTAGCTCTCTCCTTTCTCTATGG 59.782 50.000 7.70 0.00 0.00 2.74
4 5 4.218417 GGCTAGCTCTCTCCTTTCTCTATG 59.782 50.000 15.72 0.00 0.00 2.23
5 6 4.106341 AGGCTAGCTCTCTCCTTTCTCTAT 59.894 45.833 15.72 0.00 0.00 1.98
6 7 3.461831 AGGCTAGCTCTCTCCTTTCTCTA 59.538 47.826 15.72 0.00 0.00 2.43
7 8 2.244769 AGGCTAGCTCTCTCCTTTCTCT 59.755 50.000 15.72 0.00 0.00 3.10
8 9 2.666317 AGGCTAGCTCTCTCCTTTCTC 58.334 52.381 15.72 0.00 0.00 2.87
9 10 2.846665 AGGCTAGCTCTCTCCTTTCT 57.153 50.000 15.72 0.00 0.00 2.52
10 11 3.958147 AGTAAGGCTAGCTCTCTCCTTTC 59.042 47.826 15.72 6.21 39.45 2.62
11 12 3.989056 AGTAAGGCTAGCTCTCTCCTTT 58.011 45.455 15.72 0.00 39.45 3.11
12 13 3.680777 AGTAAGGCTAGCTCTCTCCTT 57.319 47.619 15.72 10.51 41.41 3.36
13 14 3.680777 AAGTAAGGCTAGCTCTCTCCT 57.319 47.619 15.72 0.00 0.00 3.69
14 15 3.958147 AGAAAGTAAGGCTAGCTCTCTCC 59.042 47.826 15.72 0.00 0.00 3.71
15 16 5.451381 GGAAGAAAGTAAGGCTAGCTCTCTC 60.451 48.000 15.72 5.05 0.00 3.20
16 17 4.404394 GGAAGAAAGTAAGGCTAGCTCTCT 59.596 45.833 15.72 0.00 0.00 3.10
17 18 4.160626 TGGAAGAAAGTAAGGCTAGCTCTC 59.839 45.833 15.72 0.00 0.00 3.20
18 19 4.081365 GTGGAAGAAAGTAAGGCTAGCTCT 60.081 45.833 15.72 7.30 0.00 4.09
19 20 4.185394 GTGGAAGAAAGTAAGGCTAGCTC 58.815 47.826 15.72 4.82 0.00 4.09
20 21 3.055021 GGTGGAAGAAAGTAAGGCTAGCT 60.055 47.826 15.72 0.00 0.00 3.32
21 22 3.055021 AGGTGGAAGAAAGTAAGGCTAGC 60.055 47.826 6.04 6.04 0.00 3.42
22 23 4.468153 AGAGGTGGAAGAAAGTAAGGCTAG 59.532 45.833 0.00 0.00 0.00 3.42
23 24 4.426704 AGAGGTGGAAGAAAGTAAGGCTA 58.573 43.478 0.00 0.00 0.00 3.93
24 25 3.252351 AGAGGTGGAAGAAAGTAAGGCT 58.748 45.455 0.00 0.00 0.00 4.58
25 26 3.704800 AGAGGTGGAAGAAAGTAAGGC 57.295 47.619 0.00 0.00 0.00 4.35
26 27 4.223032 TGCTAGAGGTGGAAGAAAGTAAGG 59.777 45.833 0.00 0.00 0.00 2.69
27 28 5.407407 TGCTAGAGGTGGAAGAAAGTAAG 57.593 43.478 0.00 0.00 0.00 2.34
28 29 5.818678 TTGCTAGAGGTGGAAGAAAGTAA 57.181 39.130 0.00 0.00 0.00 2.24
29 30 5.071250 TGTTTGCTAGAGGTGGAAGAAAGTA 59.929 40.000 0.00 0.00 0.00 2.24
30 31 4.141482 TGTTTGCTAGAGGTGGAAGAAAGT 60.141 41.667 0.00 0.00 0.00 2.66
31 32 4.389374 TGTTTGCTAGAGGTGGAAGAAAG 58.611 43.478 0.00 0.00 0.00 2.62
32 33 4.389374 CTGTTTGCTAGAGGTGGAAGAAA 58.611 43.478 0.00 0.00 0.00 2.52
33 34 3.807209 GCTGTTTGCTAGAGGTGGAAGAA 60.807 47.826 0.00 0.00 38.95 2.52
34 35 2.289694 GCTGTTTGCTAGAGGTGGAAGA 60.290 50.000 0.00 0.00 38.95 2.87
35 36 2.079925 GCTGTTTGCTAGAGGTGGAAG 58.920 52.381 0.00 0.00 38.95 3.46
36 37 2.185004 GCTGTTTGCTAGAGGTGGAA 57.815 50.000 0.00 0.00 38.95 3.53
37 38 3.935993 GCTGTTTGCTAGAGGTGGA 57.064 52.632 0.00 0.00 38.95 4.02
55 56 3.624861 GTGATACAATGGTGCTCCTTGAG 59.375 47.826 17.97 7.55 34.23 3.02
56 57 3.264193 AGTGATACAATGGTGCTCCTTGA 59.736 43.478 17.97 7.36 34.23 3.02
57 58 3.614092 AGTGATACAATGGTGCTCCTTG 58.386 45.455 6.34 10.18 34.23 3.61
58 59 4.471386 ACTAGTGATACAATGGTGCTCCTT 59.529 41.667 6.34 0.00 34.23 3.36
59 60 4.033709 ACTAGTGATACAATGGTGCTCCT 58.966 43.478 6.34 0.00 34.23 3.69
60 61 4.122776 CACTAGTGATACAATGGTGCTCC 58.877 47.826 18.45 0.00 34.67 4.70
64 65 4.142609 AGGCACTAGTGATACAATGGTG 57.857 45.455 27.08 10.32 42.18 4.17
65 66 4.844349 AAGGCACTAGTGATACAATGGT 57.156 40.909 27.08 0.00 38.49 3.55
66 67 5.755375 CACTAAGGCACTAGTGATACAATGG 59.245 44.000 27.08 11.94 40.16 3.16
67 68 6.573434 TCACTAAGGCACTAGTGATACAATG 58.427 40.000 27.08 15.76 40.95 2.82
68 69 6.791867 TCACTAAGGCACTAGTGATACAAT 57.208 37.500 27.08 10.59 40.95 2.71
69 70 6.791867 ATCACTAAGGCACTAGTGATACAA 57.208 37.500 27.48 11.61 46.89 2.41
74 75 4.442052 GCATGATCACTAAGGCACTAGTGA 60.442 45.833 27.08 23.46 45.49 3.41
75 76 3.806521 GCATGATCACTAAGGCACTAGTG 59.193 47.826 18.93 18.93 38.49 2.74
76 77 3.491619 CGCATGATCACTAAGGCACTAGT 60.492 47.826 0.00 0.00 38.49 2.57
77 78 3.055591 CGCATGATCACTAAGGCACTAG 58.944 50.000 0.00 0.00 38.49 2.57
78 79 2.224042 CCGCATGATCACTAAGGCACTA 60.224 50.000 0.00 0.00 38.49 2.74
80 81 0.940126 CCGCATGATCACTAAGGCAC 59.060 55.000 0.00 0.00 0.00 5.01
81 82 0.829990 TCCGCATGATCACTAAGGCA 59.170 50.000 0.00 0.00 0.00 4.75
82 83 1.069204 TCTCCGCATGATCACTAAGGC 59.931 52.381 0.00 0.00 0.00 4.35
83 84 2.546795 GGTCTCCGCATGATCACTAAGG 60.547 54.545 0.00 0.00 0.00 2.69
84 85 2.546795 GGGTCTCCGCATGATCACTAAG 60.547 54.545 0.00 0.00 0.00 2.18
85 86 1.412710 GGGTCTCCGCATGATCACTAA 59.587 52.381 0.00 0.00 0.00 2.24
86 87 1.040646 GGGTCTCCGCATGATCACTA 58.959 55.000 0.00 0.00 0.00 2.74
87 88 1.690219 GGGGTCTCCGCATGATCACT 61.690 60.000 0.00 0.00 36.42 3.41
88 89 1.227674 GGGGTCTCCGCATGATCAC 60.228 63.158 0.00 0.00 36.42 3.06
89 90 3.230284 GGGGTCTCCGCATGATCA 58.770 61.111 0.00 0.00 36.42 2.92
98 99 4.154347 CTGCTCTGCGGGGTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
105 106 2.790791 CCCTAGTCCTGCTCTGCGG 61.791 68.421 0.00 0.00 34.23 5.69
106 107 2.790791 CCCCTAGTCCTGCTCTGCG 61.791 68.421 0.00 0.00 0.00 5.18
107 108 1.687493 ACCCCTAGTCCTGCTCTGC 60.687 63.158 0.00 0.00 0.00 4.26
108 109 0.616111 ACACCCCTAGTCCTGCTCTG 60.616 60.000 0.00 0.00 0.00 3.35
109 110 0.117340 AACACCCCTAGTCCTGCTCT 59.883 55.000 0.00 0.00 0.00 4.09
110 111 1.861982 TAACACCCCTAGTCCTGCTC 58.138 55.000 0.00 0.00 0.00 4.26
111 112 2.022918 AGATAACACCCCTAGTCCTGCT 60.023 50.000 0.00 0.00 0.00 4.24
112 113 2.365941 GAGATAACACCCCTAGTCCTGC 59.634 54.545 0.00 0.00 0.00 4.85
113 114 2.966516 GGAGATAACACCCCTAGTCCTG 59.033 54.545 0.00 0.00 0.00 3.86
114 115 2.590611 TGGAGATAACACCCCTAGTCCT 59.409 50.000 0.00 0.00 0.00 3.85
115 116 2.699321 GTGGAGATAACACCCCTAGTCC 59.301 54.545 0.00 0.00 32.80 3.85
116 117 2.361438 CGTGGAGATAACACCCCTAGTC 59.639 54.545 0.00 0.00 35.46 2.59
117 118 2.385803 CGTGGAGATAACACCCCTAGT 58.614 52.381 0.00 0.00 35.46 2.57
118 119 1.687123 CCGTGGAGATAACACCCCTAG 59.313 57.143 0.00 0.00 35.46 3.02
119 120 1.288633 TCCGTGGAGATAACACCCCTA 59.711 52.381 0.00 0.00 35.46 3.53
120 121 0.042131 TCCGTGGAGATAACACCCCT 59.958 55.000 0.00 0.00 35.46 4.79
121 122 0.464452 CTCCGTGGAGATAACACCCC 59.536 60.000 10.50 0.00 44.53 4.95
122 123 1.481871 TCTCCGTGGAGATAACACCC 58.518 55.000 14.57 0.00 45.26 4.61
137 138 3.787001 CCAGGTTCGGGGCTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
138 139 3.787001 CCCAGGTTCGGGGCTCTC 61.787 72.222 0.00 0.00 43.21 3.20
147 148 1.162698 GGCGAACTTTACCCAGGTTC 58.837 55.000 0.00 0.00 36.83 3.62
148 149 0.604511 CGGCGAACTTTACCCAGGTT 60.605 55.000 0.00 0.00 0.00 3.50
149 150 1.004200 CGGCGAACTTTACCCAGGT 60.004 57.895 0.00 0.00 0.00 4.00
150 151 1.743995 CCGGCGAACTTTACCCAGG 60.744 63.158 9.30 0.00 0.00 4.45
151 152 2.396157 GCCGGCGAACTTTACCCAG 61.396 63.158 12.58 0.00 0.00 4.45
152 153 2.358984 GCCGGCGAACTTTACCCA 60.359 61.111 12.58 0.00 0.00 4.51
153 154 1.310216 AATGCCGGCGAACTTTACCC 61.310 55.000 23.90 0.00 0.00 3.69
154 155 0.098200 GAATGCCGGCGAACTTTACC 59.902 55.000 23.90 0.00 0.00 2.85
155 156 0.247537 CGAATGCCGGCGAACTTTAC 60.248 55.000 23.90 6.06 33.91 2.01
156 157 0.671163 ACGAATGCCGGCGAACTTTA 60.671 50.000 23.90 1.41 43.93 1.85
157 158 1.964373 ACGAATGCCGGCGAACTTT 60.964 52.632 23.90 10.01 43.93 2.66
158 159 2.358247 ACGAATGCCGGCGAACTT 60.358 55.556 23.90 12.55 43.93 2.66
159 160 3.118454 CACGAATGCCGGCGAACT 61.118 61.111 23.90 5.38 43.93 3.01
160 161 3.362851 GACACGAATGCCGGCGAAC 62.363 63.158 23.90 13.99 43.93 3.95
161 162 2.215465 TAGACACGAATGCCGGCGAA 62.215 55.000 23.90 5.15 43.93 4.70
162 163 2.702788 TAGACACGAATGCCGGCGA 61.703 57.895 23.90 11.80 43.93 5.54
163 164 2.202690 TAGACACGAATGCCGGCG 60.203 61.111 23.90 10.06 43.93 6.46
164 165 3.395669 GTAGACACGAATGCCGGC 58.604 61.111 22.73 22.73 43.93 6.13
174 175 0.596859 GCGGGATAAGGCGTAGACAC 60.597 60.000 0.00 0.00 39.87 3.67
175 176 0.754217 AGCGGGATAAGGCGTAGACA 60.754 55.000 0.00 0.00 39.87 3.41
176 177 0.388294 AAGCGGGATAAGGCGTAGAC 59.612 55.000 0.00 0.00 0.00 2.59
177 178 0.672342 GAAGCGGGATAAGGCGTAGA 59.328 55.000 0.00 0.00 0.00 2.59
178 179 0.319641 GGAAGCGGGATAAGGCGTAG 60.320 60.000 0.00 0.00 0.00 3.51
179 180 1.044231 TGGAAGCGGGATAAGGCGTA 61.044 55.000 0.00 0.00 0.00 4.42
180 181 2.311688 CTGGAAGCGGGATAAGGCGT 62.312 60.000 0.00 0.00 0.00 5.68
181 182 1.595382 CTGGAAGCGGGATAAGGCG 60.595 63.158 0.00 0.00 0.00 5.52
182 183 1.227973 CCTGGAAGCGGGATAAGGC 60.228 63.158 0.00 0.00 0.00 4.35
183 184 1.227973 GCCTGGAAGCGGGATAAGG 60.228 63.158 0.00 0.00 0.00 2.69
184 185 0.815615 GTGCCTGGAAGCGGGATAAG 60.816 60.000 0.00 0.00 34.65 1.73
185 186 1.223487 GTGCCTGGAAGCGGGATAA 59.777 57.895 0.00 0.00 34.65 1.75
186 187 2.742116 GGTGCCTGGAAGCGGGATA 61.742 63.158 0.00 0.00 34.65 2.59
187 188 4.115199 GGTGCCTGGAAGCGGGAT 62.115 66.667 0.00 0.00 34.65 3.85
199 200 4.424566 TAGAACGTCGCCGGTGCC 62.425 66.667 11.05 0.00 38.78 5.01
200 201 3.177249 GTAGAACGTCGCCGGTGC 61.177 66.667 11.05 4.65 38.78 5.01
201 202 1.513586 GAGTAGAACGTCGCCGGTG 60.514 63.158 9.28 9.28 38.78 4.94
202 203 2.873288 GAGTAGAACGTCGCCGGT 59.127 61.111 1.90 0.00 38.78 5.28
203 204 2.277120 CGAGTAGAACGTCGCCGG 60.277 66.667 0.00 0.00 38.78 6.13
207 208 1.062206 GGGAGCGAGTAGAACGTCG 59.938 63.158 0.00 0.00 39.25 5.12
208 209 0.179169 GTGGGAGCGAGTAGAACGTC 60.179 60.000 0.00 0.00 0.00 4.34
209 210 1.593296 GGTGGGAGCGAGTAGAACGT 61.593 60.000 0.00 0.00 0.00 3.99
210 211 1.139095 GGTGGGAGCGAGTAGAACG 59.861 63.158 0.00 0.00 0.00 3.95
211 212 0.824759 ATGGTGGGAGCGAGTAGAAC 59.175 55.000 0.00 0.00 0.00 3.01
212 213 0.824109 CATGGTGGGAGCGAGTAGAA 59.176 55.000 0.00 0.00 0.00 2.10
213 214 0.033503 TCATGGTGGGAGCGAGTAGA 60.034 55.000 0.00 0.00 0.00 2.59
214 215 1.043816 ATCATGGTGGGAGCGAGTAG 58.956 55.000 0.00 0.00 0.00 2.57
215 216 2.375014 TATCATGGTGGGAGCGAGTA 57.625 50.000 0.00 0.00 0.00 2.59
216 217 1.414181 CTTATCATGGTGGGAGCGAGT 59.586 52.381 0.00 0.00 0.00 4.18
217 218 1.875576 GCTTATCATGGTGGGAGCGAG 60.876 57.143 0.00 0.00 0.00 5.03
218 219 0.106708 GCTTATCATGGTGGGAGCGA 59.893 55.000 0.00 0.00 0.00 4.93
219 220 0.886490 GGCTTATCATGGTGGGAGCG 60.886 60.000 0.00 0.00 0.00 5.03
220 221 0.183492 TGGCTTATCATGGTGGGAGC 59.817 55.000 0.00 0.00 0.00 4.70
221 222 2.553904 GGATGGCTTATCATGGTGGGAG 60.554 54.545 0.00 0.00 37.54 4.30
222 223 1.425066 GGATGGCTTATCATGGTGGGA 59.575 52.381 0.00 0.00 37.54 4.37
223 224 1.145531 TGGATGGCTTATCATGGTGGG 59.854 52.381 0.00 0.00 37.54 4.61
224 225 2.662535 TGGATGGCTTATCATGGTGG 57.337 50.000 0.00 0.00 37.54 4.61
225 226 3.257375 CCAATGGATGGCTTATCATGGTG 59.743 47.826 0.00 0.00 43.80 4.17
226 227 3.503365 CCAATGGATGGCTTATCATGGT 58.497 45.455 0.00 0.00 43.80 3.55
238 239 1.881324 TGCGACATATGCCAATGGATG 59.119 47.619 2.05 0.00 0.00 3.51
239 240 1.881973 GTGCGACATATGCCAATGGAT 59.118 47.619 2.05 0.00 0.00 3.41
240 241 1.134128 AGTGCGACATATGCCAATGGA 60.134 47.619 2.05 0.00 0.00 3.41
241 242 1.265095 GAGTGCGACATATGCCAATGG 59.735 52.381 1.58 0.00 0.00 3.16
242 243 1.941975 TGAGTGCGACATATGCCAATG 59.058 47.619 1.58 0.00 0.00 2.82
243 244 2.330440 TGAGTGCGACATATGCCAAT 57.670 45.000 1.58 0.00 0.00 3.16
244 245 1.737236 GTTGAGTGCGACATATGCCAA 59.263 47.619 1.58 0.00 0.00 4.52
245 246 1.368641 GTTGAGTGCGACATATGCCA 58.631 50.000 1.58 0.00 0.00 4.92
246 247 0.657840 GGTTGAGTGCGACATATGCC 59.342 55.000 1.58 0.00 0.00 4.40
247 248 0.657840 GGGTTGAGTGCGACATATGC 59.342 55.000 1.58 0.00 0.00 3.14
248 249 1.299541 GGGGTTGAGTGCGACATATG 58.700 55.000 0.00 0.00 0.00 1.78
249 250 0.180406 GGGGGTTGAGTGCGACATAT 59.820 55.000 0.00 0.00 0.00 1.78
250 251 1.600107 GGGGGTTGAGTGCGACATA 59.400 57.895 0.00 0.00 0.00 2.29
251 252 2.351276 GGGGGTTGAGTGCGACAT 59.649 61.111 0.00 0.00 0.00 3.06
252 253 4.308458 CGGGGGTTGAGTGCGACA 62.308 66.667 0.00 0.00 0.00 4.35
253 254 3.998672 TCGGGGGTTGAGTGCGAC 61.999 66.667 0.00 0.00 0.00 5.19
254 255 3.998672 GTCGGGGGTTGAGTGCGA 61.999 66.667 0.00 0.00 0.00 5.10
255 256 4.308458 TGTCGGGGGTTGAGTGCG 62.308 66.667 0.00 0.00 0.00 5.34
256 257 2.358737 CTGTCGGGGGTTGAGTGC 60.359 66.667 0.00 0.00 0.00 4.40
257 258 2.358737 GCTGTCGGGGGTTGAGTG 60.359 66.667 0.00 0.00 0.00 3.51
258 259 3.637273 GGCTGTCGGGGGTTGAGT 61.637 66.667 0.00 0.00 0.00 3.41
259 260 4.410400 GGGCTGTCGGGGGTTGAG 62.410 72.222 0.00 0.00 0.00 3.02
277 278 2.325922 GAAACGGACATCGCGCGTAC 62.326 60.000 30.98 18.03 43.89 3.67
278 279 2.126385 AAACGGACATCGCGCGTA 60.126 55.556 30.98 17.05 43.89 4.42
279 280 3.475774 GAAACGGACATCGCGCGT 61.476 61.111 30.98 14.63 43.89 6.01
280 281 3.474904 TGAAACGGACATCGCGCG 61.475 61.111 26.76 26.76 43.89 6.86
281 282 2.095843 GTGAAACGGACATCGCGC 59.904 61.111 0.00 0.00 43.89 6.86
282 283 2.736682 GGGTGAAACGGACATCGCG 61.737 63.158 0.00 0.00 43.89 5.87
283 284 2.396157 GGGGTGAAACGGACATCGC 61.396 63.158 0.00 0.00 43.89 4.58
284 285 0.604243 TTGGGGTGAAACGGACATCG 60.604 55.000 0.00 0.00 45.88 3.84
285 286 1.268625 GTTTGGGGTGAAACGGACATC 59.731 52.381 0.00 0.00 38.12 3.06
286 287 1.133606 AGTTTGGGGTGAAACGGACAT 60.134 47.619 0.00 0.00 40.20 3.06
287 288 0.256464 AGTTTGGGGTGAAACGGACA 59.744 50.000 0.00 0.00 40.20 4.02
288 289 0.949397 GAGTTTGGGGTGAAACGGAC 59.051 55.000 0.00 0.00 40.20 4.79
289 290 0.533308 CGAGTTTGGGGTGAAACGGA 60.533 55.000 0.00 0.00 40.20 4.69
290 291 1.512156 CCGAGTTTGGGGTGAAACGG 61.512 60.000 0.00 0.00 40.20 4.44
291 292 1.946267 CCGAGTTTGGGGTGAAACG 59.054 57.895 0.00 0.00 40.20 3.60
292 293 1.658114 GCCGAGTTTGGGGTGAAAC 59.342 57.895 0.00 0.00 36.28 2.78
293 294 1.894756 CGCCGAGTTTGGGGTGAAA 60.895 57.895 0.00 0.00 37.20 2.69
294 295 2.281208 CGCCGAGTTTGGGGTGAA 60.281 61.111 0.00 0.00 37.20 3.18
297 298 4.572571 TTGCGCCGAGTTTGGGGT 62.573 61.111 4.18 0.00 43.50 4.95
298 299 3.737172 CTTGCGCCGAGTTTGGGG 61.737 66.667 4.18 0.00 44.36 4.96
299 300 2.070654 AAACTTGCGCCGAGTTTGGG 62.071 55.000 27.70 3.91 43.80 4.12
300 301 1.358759 AAACTTGCGCCGAGTTTGG 59.641 52.632 27.70 5.23 43.80 3.28
302 303 0.248458 CACAAACTTGCGCCGAGTTT 60.248 50.000 24.71 24.71 45.62 2.66
303 304 1.355210 CACAAACTTGCGCCGAGTT 59.645 52.632 17.47 17.47 39.51 3.01
304 305 3.022287 CACAAACTTGCGCCGAGT 58.978 55.556 4.18 6.29 0.00 4.18
305 306 2.427410 GCACAAACTTGCGCCGAG 60.427 61.111 4.18 5.52 31.51 4.63
306 307 3.959975 GGCACAAACTTGCGCCGA 61.960 61.111 4.18 0.00 45.22 5.54
309 310 4.999939 CCCGGCACAAACTTGCGC 63.000 66.667 0.00 0.00 44.00 6.09
310 311 2.141122 ATTCCCGGCACAAACTTGCG 62.141 55.000 0.00 0.00 44.00 4.85
311 312 0.667184 CATTCCCGGCACAAACTTGC 60.667 55.000 0.00 0.00 42.18 4.01
312 313 0.958091 TCATTCCCGGCACAAACTTG 59.042 50.000 0.00 0.00 0.00 3.16
313 314 1.247567 CTCATTCCCGGCACAAACTT 58.752 50.000 0.00 0.00 0.00 2.66
314 315 0.110486 ACTCATTCCCGGCACAAACT 59.890 50.000 0.00 0.00 0.00 2.66
315 316 0.521735 GACTCATTCCCGGCACAAAC 59.478 55.000 0.00 0.00 0.00 2.93
316 317 0.953471 CGACTCATTCCCGGCACAAA 60.953 55.000 0.00 0.00 0.00 2.83
317 318 1.375396 CGACTCATTCCCGGCACAA 60.375 57.895 0.00 0.00 0.00 3.33
318 319 1.822114 TTCGACTCATTCCCGGCACA 61.822 55.000 0.00 0.00 0.00 4.57
319 320 0.672401 TTTCGACTCATTCCCGGCAC 60.672 55.000 0.00 0.00 0.00 5.01
320 321 0.035598 TTTTCGACTCATTCCCGGCA 59.964 50.000 0.00 0.00 0.00 5.69
321 322 0.446616 GTTTTCGACTCATTCCCGGC 59.553 55.000 0.00 0.00 0.00 6.13
341 342 2.081462 ACAAATGTCCGGATTTCGTCC 58.919 47.619 7.81 0.00 44.10 4.79
342 343 3.385079 GACAAATGTCCGGATTTCGTC 57.615 47.619 7.81 11.43 39.07 4.20
353 354 1.883021 CCCCAAGCGGACAAATGTC 59.117 57.895 4.96 4.96 44.04 3.06
354 355 2.275380 GCCCCAAGCGGACAAATGT 61.275 57.895 0.00 0.00 0.00 2.71
355 356 2.573340 GCCCCAAGCGGACAAATG 59.427 61.111 0.00 0.00 0.00 2.32
356 357 2.679996 GGCCCCAAGCGGACAAAT 60.680 61.111 0.00 0.00 45.17 2.32
377 378 2.401990 GAATAACGCGGCCCAACG 59.598 61.111 12.47 0.60 0.00 4.10
378 379 2.300597 GACGAATAACGCGGCCCAAC 62.301 60.000 12.47 0.00 46.94 3.77
379 380 2.047083 ACGAATAACGCGGCCCAA 60.047 55.556 12.47 0.00 46.94 4.12
380 381 2.509786 GACGAATAACGCGGCCCA 60.510 61.111 12.47 0.00 46.94 5.36
383 384 2.338936 GAACGGACGAATAACGCGGC 62.339 60.000 12.47 0.00 46.94 6.53
384 385 0.799534 AGAACGGACGAATAACGCGG 60.800 55.000 12.47 0.00 46.94 6.46
385 386 1.510338 GTAGAACGGACGAATAACGCG 59.490 52.381 3.53 3.53 46.94 6.01
386 387 1.848608 GGTAGAACGGACGAATAACGC 59.151 52.381 0.00 0.00 46.94 4.84
388 389 3.063997 TCGAGGTAGAACGGACGAATAAC 59.936 47.826 0.00 0.00 0.00 1.89
389 390 3.270027 TCGAGGTAGAACGGACGAATAA 58.730 45.455 0.00 0.00 0.00 1.40
390 391 2.905075 TCGAGGTAGAACGGACGAATA 58.095 47.619 0.00 0.00 0.00 1.75
391 392 1.742761 TCGAGGTAGAACGGACGAAT 58.257 50.000 0.00 0.00 0.00 3.34
392 393 1.197721 GTTCGAGGTAGAACGGACGAA 59.802 52.381 0.00 0.00 40.68 3.85
393 394 0.798776 GTTCGAGGTAGAACGGACGA 59.201 55.000 0.00 0.00 40.68 4.20
394 395 3.302968 GTTCGAGGTAGAACGGACG 57.697 57.895 0.00 0.00 40.68 4.79
399 400 0.796113 GCGTCCGTTCGAGGTAGAAC 60.796 60.000 0.86 0.21 45.05 3.01
400 401 1.503542 GCGTCCGTTCGAGGTAGAA 59.496 57.895 0.86 0.00 0.00 2.10
401 402 2.401766 GGCGTCCGTTCGAGGTAGA 61.402 63.158 0.86 0.00 0.00 2.59
402 403 2.101770 GGCGTCCGTTCGAGGTAG 59.898 66.667 0.86 0.00 0.00 3.18
403 404 3.803082 CGGCGTCCGTTCGAGGTA 61.803 66.667 9.69 0.00 42.73 3.08
418 419 4.227134 CTCCATCCTGTCCGGCGG 62.227 72.222 22.51 22.51 0.00 6.13
419 420 3.019003 AACTCCATCCTGTCCGGCG 62.019 63.158 0.00 0.00 0.00 6.46
420 421 1.450312 CAACTCCATCCTGTCCGGC 60.450 63.158 0.00 0.00 0.00 6.13
421 422 1.221840 CCAACTCCATCCTGTCCGG 59.778 63.158 0.00 0.00 0.00 5.14
422 423 1.450312 GCCAACTCCATCCTGTCCG 60.450 63.158 0.00 0.00 0.00 4.79
423 424 1.077429 GGCCAACTCCATCCTGTCC 60.077 63.158 0.00 0.00 0.00 4.02
424 425 0.329596 AAGGCCAACTCCATCCTGTC 59.670 55.000 5.01 0.00 0.00 3.51
425 426 1.668826 TAAGGCCAACTCCATCCTGT 58.331 50.000 5.01 0.00 0.00 4.00
426 427 2.441001 AGATAAGGCCAACTCCATCCTG 59.559 50.000 5.01 0.00 0.00 3.86
427 428 2.781667 AGATAAGGCCAACTCCATCCT 58.218 47.619 5.01 0.00 0.00 3.24
428 429 3.584733 AAGATAAGGCCAACTCCATCC 57.415 47.619 5.01 0.00 0.00 3.51
429 430 4.273318 ACAAAGATAAGGCCAACTCCATC 58.727 43.478 5.01 0.00 0.00 3.51
430 431 4.322057 ACAAAGATAAGGCCAACTCCAT 57.678 40.909 5.01 0.00 0.00 3.41
431 432 3.806949 ACAAAGATAAGGCCAACTCCA 57.193 42.857 5.01 0.00 0.00 3.86
432 433 4.809673 CAAACAAAGATAAGGCCAACTCC 58.190 43.478 5.01 0.00 0.00 3.85
433 434 4.021981 AGCAAACAAAGATAAGGCCAACTC 60.022 41.667 5.01 0.00 0.00 3.01
434 435 3.897505 AGCAAACAAAGATAAGGCCAACT 59.102 39.130 5.01 0.00 0.00 3.16
435 436 4.021981 AGAGCAAACAAAGATAAGGCCAAC 60.022 41.667 5.01 0.00 0.00 3.77
436 437 4.151883 AGAGCAAACAAAGATAAGGCCAA 58.848 39.130 5.01 0.00 0.00 4.52
437 438 3.766545 AGAGCAAACAAAGATAAGGCCA 58.233 40.909 5.01 0.00 0.00 5.36
438 439 5.825151 AGATAGAGCAAACAAAGATAAGGCC 59.175 40.000 0.00 0.00 0.00 5.19
439 440 6.934048 AGATAGAGCAAACAAAGATAAGGC 57.066 37.500 0.00 0.00 0.00 4.35
455 456 7.824289 TGGAACAAACCAAGACAATAGATAGAG 59.176 37.037 0.00 0.00 36.96 2.43
481 482 4.549458 CAGTTGAAATCGCCAAAGACAAT 58.451 39.130 0.00 0.00 0.00 2.71
482 483 3.795150 GCAGTTGAAATCGCCAAAGACAA 60.795 43.478 0.00 0.00 0.00 3.18
553 554 9.134268 AGTGTTGCACTGGTAGTAGTACCTTAC 62.134 44.444 24.16 13.22 43.63 2.34
554 555 7.198589 AGTGTTGCACTGGTAGTAGTACCTTA 61.199 42.308 24.16 7.35 43.63 2.69
570 571 1.753956 CGCTTTGGTAAGTGTTGCAC 58.246 50.000 0.00 0.00 37.16 4.57
578 579 2.000447 GAGTAGGCACGCTTTGGTAAG 59.000 52.381 0.00 0.00 34.36 2.34
689 692 0.602372 TACCCCCGTTGTTTGTACGC 60.602 55.000 0.00 0.00 37.67 4.42
1024 1059 4.200283 GACGAGGAGGAGCGGCAG 62.200 72.222 1.45 0.00 35.15 4.85
1069 1113 4.444081 CGTCCTCTCCCCTCCCGT 62.444 72.222 0.00 0.00 0.00 5.28
1230 1274 4.452733 GCCGAGAACCCGTGGAGG 62.453 72.222 0.00 0.00 40.63 4.30
1890 1934 2.408835 CCAATTGCGATGGCGTCC 59.591 61.111 0.00 0.00 44.10 4.79
1911 1955 2.107141 GCCTCTGTAGCGCCGAAT 59.893 61.111 2.29 0.00 0.00 3.34
1920 1964 1.816537 GACGATGCCAGCCTCTGTA 59.183 57.895 0.00 0.00 0.00 2.74
2046 2090 2.017783 GTTGCCGAGACGCACGTTA 61.018 57.895 0.00 0.00 38.83 3.18
2529 2576 1.069935 GGCTATCAGGTCCGGCTTC 59.930 63.158 0.00 0.00 0.00 3.86
2625 2672 0.911769 TGCCGGAGAGGATGTTGAAT 59.088 50.000 5.05 0.00 45.00 2.57
2754 2801 2.193536 GCCGTTGCTGTTGTCCCTT 61.194 57.895 0.00 0.00 33.53 3.95
2884 2931 3.194542 CAGAGGAAGTTGAGGTAGTCCAG 59.805 52.174 0.00 0.00 35.89 3.86
2885 2932 3.165875 CAGAGGAAGTTGAGGTAGTCCA 58.834 50.000 0.00 0.00 35.89 4.02
2893 2940 2.149578 CAGGTTGCAGAGGAAGTTGAG 58.850 52.381 0.00 0.00 0.00 3.02
2913 2960 2.433868 TGTTCTGCTCCGTGTAGTTC 57.566 50.000 0.00 0.00 0.00 3.01
3129 3176 2.390599 CGTGACATTGCACCCCTCG 61.391 63.158 0.00 0.00 35.37 4.63
3361 3408 2.599082 GTGTTAACTTGGCTCGATCGAG 59.401 50.000 35.25 35.25 44.56 4.04
3393 3467 9.015577 CACTAGTAGTAAGTACGTAGTCTACAC 57.984 40.741 21.94 16.16 43.93 2.90
3424 3508 9.392259 GCTCTTGATCCAAATCATATATGATCA 57.608 33.333 24.96 16.76 46.22 2.92
3425 3509 9.616156 AGCTCTTGATCCAAATCATATATGATC 57.384 33.333 24.96 14.65 46.22 2.92
3427 3511 9.803507 AAAGCTCTTGATCCAAATCATATATGA 57.196 29.630 17.56 17.56 41.49 2.15
3431 3515 9.198475 AGAAAAAGCTCTTGATCCAAATCATAT 57.802 29.630 0.00 0.00 41.49 1.78
3459 3543 0.321653 ATGGAACGCAACTCTGTCCC 60.322 55.000 0.00 0.00 0.00 4.46
3474 3567 4.017126 ACTGTTGTATGAGACGAGATGGA 58.983 43.478 0.00 0.00 0.00 3.41
3520 3614 9.803315 ACCATGTACTATTTATACGATGCTATG 57.197 33.333 0.00 0.00 0.00 2.23
3592 3703 6.375377 TGAAACATGTGTAATTTTCGTAGCC 58.625 36.000 0.00 0.00 31.76 3.93
3608 3723 4.386652 CCGGCAAAAGAAAGATGAAACATG 59.613 41.667 0.00 0.00 0.00 3.21
3685 3800 1.203187 ACTCCCTAGTTGACAGCCAGA 60.203 52.381 0.00 0.00 29.00 3.86
3690 3805 2.691011 GCTCCTACTCCCTAGTTGACAG 59.309 54.545 0.00 0.00 37.15 3.51
3700 3815 2.224646 GGAATGGAATGCTCCTACTCCC 60.225 54.545 0.00 0.00 42.94 4.30
3702 3817 3.845781 TGGAATGGAATGCTCCTACTC 57.154 47.619 0.00 0.00 42.94 2.59
3704 3819 3.823304 GGAATGGAATGGAATGCTCCTAC 59.177 47.826 0.00 0.00 42.94 3.18
3707 3822 2.669781 TGGAATGGAATGGAATGCTCC 58.330 47.619 0.00 0.00 42.81 4.70
3709 3824 3.236896 GGATGGAATGGAATGGAATGCT 58.763 45.455 0.00 0.00 0.00 3.79
3710 3825 2.967201 TGGATGGAATGGAATGGAATGC 59.033 45.455 0.00 0.00 0.00 3.56
3711 3826 3.005050 CGTGGATGGAATGGAATGGAATG 59.995 47.826 0.00 0.00 0.00 2.67
3712 3827 3.117550 TCGTGGATGGAATGGAATGGAAT 60.118 43.478 0.00 0.00 0.00 3.01
3713 3828 2.240921 TCGTGGATGGAATGGAATGGAA 59.759 45.455 0.00 0.00 0.00 3.53
3714 3829 1.843206 TCGTGGATGGAATGGAATGGA 59.157 47.619 0.00 0.00 0.00 3.41
3715 3830 2.346766 TCGTGGATGGAATGGAATGG 57.653 50.000 0.00 0.00 0.00 3.16
3716 3831 4.453478 CAGTATCGTGGATGGAATGGAATG 59.547 45.833 0.00 0.00 0.00 2.67
3720 3835 2.146342 GCAGTATCGTGGATGGAATGG 58.854 52.381 0.00 0.00 0.00 3.16
3734 3849 5.337894 CCAAGGCATAGCACTATAGCAGTAT 60.338 44.000 0.00 0.00 34.98 2.12
3736 3851 3.244353 CCAAGGCATAGCACTATAGCAGT 60.244 47.826 0.00 0.00 38.32 4.40
3737 3852 3.332919 CCAAGGCATAGCACTATAGCAG 58.667 50.000 0.00 0.00 36.85 4.24
3742 3857 0.469917 ACGCCAAGGCATAGCACTAT 59.530 50.000 12.19 0.00 42.06 2.12
3744 3859 1.002134 AACGCCAAGGCATAGCACT 60.002 52.632 12.19 0.00 42.06 4.40
3745 3860 1.429423 GAACGCCAAGGCATAGCAC 59.571 57.895 12.19 0.00 42.06 4.40
3746 3861 1.748879 GGAACGCCAAGGCATAGCA 60.749 57.895 12.19 0.00 42.06 3.49
3747 3862 1.718757 CTGGAACGCCAAGGCATAGC 61.719 60.000 12.19 0.00 45.41 2.97
3841 3956 5.900699 TCTTGGCATGTAGTACTATGGGTTA 59.099 40.000 5.75 0.00 0.00 2.85
3851 3966 2.375146 TCGAGCTCTTGGCATGTAGTA 58.625 47.619 12.85 0.00 44.79 1.82
3852 3967 1.186200 TCGAGCTCTTGGCATGTAGT 58.814 50.000 12.85 0.00 44.79 2.73
3853 3968 2.299993 TTCGAGCTCTTGGCATGTAG 57.700 50.000 12.85 0.00 44.79 2.74
3872 3987 2.978156 TGGAGCCAACTTGGAGAATT 57.022 45.000 12.37 0.00 40.96 2.17
3878 3994 1.308069 CGGTCATGGAGCCAACTTGG 61.308 60.000 3.10 3.10 41.55 3.61
3888 4004 3.399181 GCCCAGTCCGGTCATGGA 61.399 66.667 19.58 0.00 36.09 3.41
3894 4010 4.335647 CAAGCAGCCCAGTCCGGT 62.336 66.667 0.00 0.00 0.00 5.28
4009 4125 6.693466 TGACATAACTACCTGAAAATCGACA 58.307 36.000 0.00 0.00 0.00 4.35
4013 4129 8.604890 GCTAACTGACATAACTACCTGAAAATC 58.395 37.037 0.00 0.00 0.00 2.17
4019 4135 6.163476 TGTTGCTAACTGACATAACTACCTG 58.837 40.000 0.00 0.00 0.00 4.00
4020 4136 6.354794 TGTTGCTAACTGACATAACTACCT 57.645 37.500 0.00 0.00 0.00 3.08
4055 4171 7.404985 CAATTTCCTGAATCTCGTGATAACAG 58.595 38.462 18.88 18.88 37.18 3.16
4068 4198 3.992999 TGGTATGCCCAATTTCCTGAAT 58.007 40.909 0.00 0.00 41.50 2.57
4210 4340 1.133809 TCCCCACCTTCCTCTGTTGG 61.134 60.000 0.00 0.00 0.00 3.77
4211 4341 0.995024 ATCCCCACCTTCCTCTGTTG 59.005 55.000 0.00 0.00 0.00 3.33
4212 4342 1.636003 GAATCCCCACCTTCCTCTGTT 59.364 52.381 0.00 0.00 0.00 3.16
4213 4343 1.290134 GAATCCCCACCTTCCTCTGT 58.710 55.000 0.00 0.00 0.00 3.41
4214 4344 1.211457 CTGAATCCCCACCTTCCTCTG 59.789 57.143 0.00 0.00 0.00 3.35
4215 4345 1.589414 CTGAATCCCCACCTTCCTCT 58.411 55.000 0.00 0.00 0.00 3.69
4216 4346 0.548510 CCTGAATCCCCACCTTCCTC 59.451 60.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.