>input_sequence_34233
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--------------------------------------------------------------------------ATGCCG
CGCCATCTGCTCCCGCTGCTGCCGCTCCTC---------CTCGTCGCCGCGGCGGGCGCCTCCGGCGGGGACACGGGAGG
GGAGAGGACGTACATCGTGCGGGTGGATGCCGACGCGAAGCCGTCGGCTTTCCCGACCCACGCGCACTGGTACGAGTCGG
CGGTGCTGGGGGCGTCCGGGGGCGGCGGGGGGTGGCCGGAGGGCGGCCCGCTGATCCACACCTACTCCGCCGCCCTCCAC
GGGTTCTCGGCGCGGATGTCGCCGTCGGCCGCGGCGGCGCTGGCCGGCGCCCACGGGGTGGCGGCCGTGCTGCCGGAGCG
CGTCCGCCACCTCGCCACCACGCGCTCGCCGCGGTTCCTCGGGATGCTCTCCTCCCCGCCCTCGGCCATCCTCGCCGACT
CCGACTTCGGCTCCGACCTCGTCATCGCCGTCATCGACACCGGCATCTCGCCCGCGCACCGCAGCTTCCGCGACCGCGGC
CTCGGCCCCGTCCCGCCCAGGTGGCGCGGGGTGTGCGCGTCCGGGCCCGGCTTCCCGCCCGGCTCCTGCAATCGGAAGCT
CGTCGGGGCGCGCTTCTTCTCCGCGGGCTACGAGGCCACCTCCGGCCGGATGAACGAGACCGCCGAGGTCAGGTCGCCGC
TCGACAACGACGGCCACGGCACCCACACGGCGTCCATCGCCGCGGGCCGCTACGTGTTCCCGGCGTCCACCCTCGGCTAC
GCGCGCGGCGTGGCATCCGGGATGGCGCCCAAGGCTCGCCTCGCCGCGTACAAGGTGTGCTGGGTGGGCGGCTGCTTCGA
CTCCGACATCCTCGCGGCCTTCGATGCCGCCGTCGCTGACGGCGTCGACGTTGTTTCTCTCAGCGTCGGCGGTGCCGTGG
TGCCGTACTATCTGGACGCCATCGCAATTGGGGCATTCGGCGCTACAGAGGCTGGCATCGTCGTGTCCGCTTCGGCCGGC
AATGGCGGCCCAGGTGGTCTCTCTGTGACCAATGTGGCGCCCTGGATGACCACCGTAGGCGCCGGGTCCATGGACCGCGC
CTTCCCGGCTAACGTGCGTCTCGGCAACGGCCAAGTGCTCGACGGCGTGAGCGTGTACGGCGGGCCGGTG---CTCCAGT
CCGGCAAAATGTACGAGCTGGTGTACGCGGGGGCAACCAGTTACTCGGCGTCGACGTGCCTCGACGGGTCGCTGGACCAG
GCGGCCGTGCGCGGGAAGATCGTGGTGTGCGACCGCGGCGTGAACTCGCGCGCCGCCAAGGGCGACGTGGTTCACCGCGC
GGGCGCCGCCGGGATGGTGCTTGCCAACGGGGCGTTCGACGGGGAGGGCCTGGTAGCCGACTGCCATGTCCTGCCAGCCA
CCGCCGTGGGTGCAGCCGCCGGCGAGAAGCTCCGTAAGTACATCGCGTCGTCCACCCCGCAGAAGCCGGCCACGGGCACC
ATCCTGTTCCAAGGCACCCACCTCGGCGTGCACCCAGCGCCGGTGGTGGCGGCGTTCTCGGCGCGCGGCCCGAACCCCCA
ATCTCCAGAGACACTGAAGCCGGACCTGATAGCCCCCGGCCTGAACATCCTCGCCGCGTGGCCCAGCGGCGTGGGCCCGG
CAGGCATCCCCTCGGACGGCCGGCGCACGGAATTCAACATCCTCTCCGGCACGTCCATGGCCTGCCCGCACGTCTCCGGC
CTCGCGGCGCTGCTCAAGGCGGCGCACCCGACGTGGAGCCCCGCGGCCATCAAGTCGGCGCTCATGACCACGGCCTACAC
AAGGGACAACAGCAACGGCACCATGACCGACGAGTCCACCGGCAAGGTGGCGGACGTGTTCGACTTCGGCGCGGGGCACG
TGGACCCGATGCGCGCCATGGACCCGGGCCTCGTCTACGACATCGCGCCCCTGGACTACCTCAACTTCCTCTGCAACCTG
AACTACACGGAGCAGAACATCCGGGCGATCACGCGGCGCCAGGCCGACTGCCGGGGCGCGCGCCGCGCCGGCCACGCCGG
CAACCTCAACTACCCGTCCCTGTCGGCCACGTTCGTGGCGGACGGCGCGAAGGCGAGGATGAGGACCCACTTCATCCGCA
CGGTGACCAACGTGGGCGGCGGCAGGTCGGCGTACCGCGCCACCGTGAGGGCGCCCGAGGGGTGCAATGTCACGGTGCGG
CCCGACCGGCTGGCGTTCCGGCGCGACGGGCAGAAGCTCAGCTTCACGGTGCACGTGGAGGCCGCGGCGCGGGCGAAGAT
GGAGCCCGGGAGCTCCCTGGTGAGGAGCGGGGCGCTGACGTGGAGCGACGGCCGGCACGCCGTCGTGAGCCCGATCGTGG
TGACACTGCAAGCGCCAGTGCAGTAG------------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G416100
CACCCATAGAGAAAGGAGAGAGCTAGCCTTACTTTCTTCCACCTCTAGCAAACAGCTCAAGGAGCACCATTGTATCACTA
GTGCCTTAGTGATCATGCGGAGACCCCGCAGAGCAGGACTAGGGGTGTTATCTCCACGGAGAGCCCCGAACCTGGGTAAA
GTTCGCCGGCATTCGTGTCTACGCCTTATCCCGCTTCCAGGCACCGGCGACGTTCTACTCGCTCCCACCATGATAAGCCA
TCCATTGGCATATGTCGCACTCAACCCCCGACAGCCCGTACGCGCGATGTCCGTTTCACCCCAAACTCGGCGCAAGTTTG
TGCCGGGAATGAGTCGAAAACGGACGAAATCCGGACATTTGTCCGCTTGGGGCCGCGCGTTGGGCCGCGTTATTCGTCCG
TTCTACCTCGAACGGACGCCGCCGGACAGGATGGAGTTGGCCTTATCTTTGTTTGCTCTATCTATTGTCTTGGTTTGTTC
CATTGTCTTTGGCGATTTCAACTGCAACATTTTTCATAGTTTCGTTTGTGAAAAAGAAGATAATTACTCTGTCGTAAGGT
ACTACTACCAGTGCAACACTTACCAAAGCGTGCCTACTCTTCGAGTACAAACTTCCAGGTT--TCAACCCGTGACAGGCA
AAAACAACACGCGTCTGGACGTACAAACAAACTTTTTCTTCGAGTGGGGGCGCGTACA----AACAACGGGGGTAACGAA
CAACCGATCAAGAGTCCAAACGAGTGCTGACCCACCCACACGGCGGGGTCGGCCCGCCAAATCCATCCAAACCCACCACA
CACCTCTGCAAGA----TGACTTCAGTCCGGTCCGGTCCGGTCCAGACCCGCGAGCCAGAGCCACACCGC--CTCT---C
TGCTCCATCGTACGCCACGGCA---------CCACCACGCTGTCTCCTTGACCTTTACCCG-----AGGCAGGCGCTGCG
CGGCTTTCCCCTTCGCCGCTCCACTC-----CACTCCCTGCTCCCCAATCTCGCTCCCGATCCGCCATTGCGCAATGCCG
CGCCATCTGCTCCCGCTGCTGCCGCTCCTC---------CTCGTCGCCGCGGCGGGCGCCTCCGGCGGGGACACGGGAGG
GGAGAGGACGTACATCGTGCGGGTGGATGCCGACGCGAAGCCGTCGGCTTTCCCGACCCACGCGCACTGGTACGAGTCGG
CGGTGCTGGGGGCGTCCGGGGGCGGCGGGGGGTGGCCGGAGGGCGGCCCGCTGATCCACACCTACTCCGCCGCCCTCCAC
GGGTTCTCGGCGCGGATGTCGCCGTCGGCCGCGGCGGCGCTGGCCGGCGCCCACGGGGTGGCGGCCGTGCTGCCGGAGCG
CGTCCGCCACCTCGCCACCACGCGCTCGCCGCGGTTCCTCGGGATGCTCTCCTCCCCGCCCTCGGCCATCCTCGCCGACT
CCGACTTCGGCTCCGACCTCGTCATCGCCGTCATCGACACCGGCATCTCGCCCGCGCACCGCAGCTTCCGCGACCGCGGC
CTCGGCCCCGTCCCGCCCAGGTGGCGCGGGGTGTGCGCGTCCGGGCCCGGCTTCCCGCCCGGCTCCTGCAATCGGAAGCT
CGTCGGGGCGCGCTTCTTCTCCGCGGGCTACGAGGCCACCTCCGGCCGGATGAACGAGACCGCCGAGGTCAGGTCGCCGC
TCGACAACGACGGCCACGGCACCCACACGGCGTCCATCGCCGCGGGCCGCTACGTGTTCCCGGCGTCCACCCTCGGCTAC
GCGCGCGGCGTGGCATCCGGGATGGCGCCCAAGGCTCGCCTCGCCGCGTACAAGGTGTGCTGGGTGGGCGGCTGCTTCGA
CTCCGACATCCTCGCGGCCTTCGATGCCGCCGTCGCTGACGGCGTCGACGTTGTTTCTCTCAGCGTCGGCGGTGCCGTGG
TGCCGTACTATCTGGACGCCATCGCAATTGGGGCATTCGGCGCTACAGAGGCTGGCATCGTCGTGTCCGCTTCGGCCGGC
AATGGCGGCCCAGGTGGTCTCTCTGTGACCAATGTGGCGCCCTGGATGACCACCGTAGGCGCCGGGTCCATGGACCGCGC
CTTCCCGGCTAACGTGCGTCTCGGCAACGGCCAAGTGCTCGACGGCGTGAGCGTGTACGGCGGGCCGGTG---CTCCAGT
CCGGCAAAATGTACGAGCTGGTGTACGCGGGGGCAACCAGTTACTCGGCGTCGACGTGCCTCGACGGGTCGCTGGACCAG
GCGGCCGTGCGCGGGAAGATCGTGGTGTGCGACCGCGGCGTGAACTCGCGCGCCGCCAAGGGCGACGTGGTTCACCGCGC
GGGCGCCGCCGGGATGGTGCTTGCCAACGGGGCGTTCGACGGGGAGGGCCTGGTAGCCGACTGCCATGTCCTGCCAGCCA
CCGCCGTGGGTGCAGCCGCCGGCGAGAAGCTCCGTAAGTACATCGCGTCGTCCACCCCGCAGAAGCCGGCCACGGGCACC
ATCCTGTTCCAAGGCACCCACCTCGGCGTGCACCCAGCGCCGGTGGTGGCGGCGTTCTCGGCGCGCGGCCCGAACCCCCA
ATCTCCAGAGACACTGAAGCCGGACCTGATAGCCCCCGGCCTGAACATCCTCGCCGCGTGGCCCAGCGGCGTGGGCCCGG
CAGGCATCCCCTCGGACGGCCGGCGCACGGAATTCAACATCCTCTCCGGCACGTCCATGGCCTGCCCGCACGTCTCCGGC
CTCGCGGCGCTGCTCAAGGCGGCGCACCCGACGTGGAGCCCCGCGGCCATCAAGTCGGCGCTCATGACCACGGCCTACAC
AAGGGACAACAGCAACGGCACCATGACCGACGAGTCCACCGGCAAGGTGGCGGACGTGTTCGACTTCGGCGCGGGGCACG
TGGACCCGATGCGCGCCATGGACCCGGGCCTCGTCTACGACATCGCGCCCCTGGACTACCTCAACTTCCTCTGCAACCTG
AACTACACGGAGCAGAACATCCGGGCGATCACGCGGCGCCAGGCCGACTGCCGGGGCGCGCGCCGCGCCGGCCACGCCGG
CAACCTCAACTACCCGTCCCTGTCGGCCACGTTCGTGGCGGACGGCGCGAAGGCGAGGATGAGGACCCACTTCATCCGCA
CGGTGACCAACGTGGGCGGCGGCAGGTCGGCGTACCGCGCCACCGTGAGGGCGCCCGAGGGGTGCAATGTCACGGTGCGG
CCCGACCGGCTGGCGTTCCGGCGCGACGGGCAGAAGCTCAGCTTCACGGTGCACGTGGAGGCCGCGGCGCGGGCGAAGAT
GGAGCCCGGGAGCTCCCTGGTGAGGAGCGGGGCGCTGACGTGGAGCGACGGCCGGCACGCCGTCGTGAGCCCGATCGTGG
TGACACTGCAAGCGCCAGTGCAGTAGGCAGGCCGGCTCGTTGAAAAGCTC---------------GATCGA---------
---GCCAAGTTAACACGATCTCCGGCGTGTAGACTAC-----GTACT-----TACTACTAGTGGTTATGATCATATATGA
TTTGGATCAAGAGCTTTTTCTTG---------GGACAGAGTTGCGTTCCATCTCGTCTCATACAACA-GTATTACTAACA
GCTACTAGTATAGCATAG-------------CATCGTATAAATAGTACATGGTTAATTAACCTGCACCC----TACAATT
AACATATGGACACACTAACAATGGCTACGAAAAT----TACACATGTTTCATCTTTCTTTTGCCGGATTAACTTGAGAGG
ATCTGTAGCTCTCGAGGCCACCGTACGCCTGGAGCCAAGTCTGGCTGTCAACTAGGGAGTAGGAGCATTCCATTCCATTC
CATCCACGATACTGCTATAGTGCTATGCCTTGGCGTTCCAGAGCTGGCTGAGCTCCCCTCTCTGCGCGCCCAGCGCAGCG
ATGGTTCCTGCAAGATCAATTTCAGACCACAAGATTAACCCATAGTACTACATGCCAAGAGCTCGAAA-TTCTCCAAGTT
GGCTCCATGACCGGACTGGGCTGCTTGGTAATGGTACCTAGCGTACAGGGGACGAGGTAGAGCAGGGCCGGCTGGCCGCT
CTTCATCAGGTACAGGCCAACATACGTGAATGACAGGCCTGCATTGTCGATTTTCAGGTAGTTATGTCAGTTAGCAACAG
CTTCTTAATGC--------------TGTTATCACGAGATTCAGGAAATTGGGCATACCAAATGCGTAGCCGATCATGACG
TAGGGGAAATAACCGTTGGCCACACCCTTGCCGTGTGTTCTGTCATATCTGCATCATGCAACCCAGCAGCAGCAGCAGCA
GCTGGTAATTATGTTGTGTCCAACAG---------AGGAAGGTGGGGATTCAGGCCCTGTGCTTCTTACCTGAAGCTGAA
GGCGACGAGGAGCCCAGGGAAGAGGATGTCCCCGAAGCCGATCATGTCGTAGCCGTTCCACACGTCGAACTCCTTGGG
>chr3B_443
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------------------------------------------TTATCTTTGTTTGTTCTATTGC----CTTGGTTTGTTC
CGATATATTTGGCCATTTCAACTGCAACACTTTCCATGGTTAGGTTTGTAAAAAAGAAGATAATTACTCTGTC--AAGGT
ACTACTACCATCGCAGGAGACACCAAAGCGTGCCTACTCCTCCAGTACAAACTTCCAGGTTTTTCAACCCGTGACAGGCA
AAAACAACACACGTCTGGACGTACAAACAAACTTTTTCTCCGAGCGGGGGCACGTACA----AACAACGGGAGTAACGAA
CAACCCATCAAGAGTCCAAACGAGTGCTGACCCACCCACACGGCGGGGTCGGCCCGCCAAATCCATCCAAACCCACCACA
CACCTCTGCAAGA----TGACTTCAGTCCGGTCCGGTCCGGTCCAGCCCAGCGAGCCAGAGCCACACCGCCTCTCT---C
TGCTCCATCGTACGCCACGGCAGCAGCACCACCACCACGCTGTCTCCTTGACCTTTACTCG-----AGGCAGGCGCTGCG
CGGCTTTCCCCTTCGCCGCTCCACTC-----CACTCCCTCTTCCCCAATCTCGCCCCCGATCCGCCATTGCGCAATGCCG
CGCCATCTGCTGCTG------CCGCTGCCGCTGCTCCTTCTCGTCGCCGCGGTGGGCGCCTCCGCCGGGGACGCCGGAGG
GGAGAGGACGTACATCGTGCGGGTGGACGCCGACGCGAAGCCGTCGGCTTTCCCGACCCACGCGCACTGGTACGAGTCGG
CGGTGCTGGCGGCGTCCGGGGGCGGCGGGGGGTGGCCGGAGGGCGGCCCGCTGATCCACACCTACTCGTCGGCGCTCCAC
GGCTTCTCGGCCCGGATGTCGCCGTCCGCCGCCGCGGCGCTGGCCGGCGCCCACGGGGTGGCGGCCGTGCTGCCGGAGCG
CGTCCGCCGCCTGGACACCACGCGCTCGCCGCGGTTCCTCGGGATGCTCTCCTCCCCGCCCTCGGCCATCCTCGCCGACT
CCGACTTCGGCTCCGACCTCGTCATCGCCGTCATCGACACCGGCATCTCGCCCGCGCACCGCAGCTTCCGCGACCGCGGG
CTCGGCCCCGTCCCGCCCAGGTGGCGCGGGGTGTGCGCGTCCGGGCCCGGCTTCCCGCCCGGCTCCTGCAACCGCAAGCT
CGTCGGGGCGCGCTTCTTCTCCGCGGGCTACGAGGCCACCTCCGGCCGGATGAACGAGACCGCCGAGGTCAGGTCGCCGC
TCGACAACGACGGCCACGGGACCCACACGGCGTCCATCGCCGCGGGCCGCTACGTGTTCCCGGCGTCCACCCTCGGCTAC
GCGCGCGGCGTGGCCTCCGGGATGGCGCCCAAGGCGCGCCTCGCCGCGTAAAAGGTGTGCTGGGTGGGCGGCTGCTTCGA
CTCCGACATCCTCGCGGCCTTCGATGCCGCCGTCGCTGACGGCGTCGACGTTGTTTCTCTCAGCGTCGGCGGTGCCGTGG
TGCCGTACTATCTCGACGCCATTGCAATTGGGGCGTTCGGCGCCACAGAGGCTGGCATCGTTGTGTCCGCTTCTGCCGGC
AACGGCGGCCCAGGTGGTCTTTCTGTGACCAATGTGGCGCCCTGGATGACCACCGTAGGCGCTGGGTCCATGGACCGCGC
CTTCCCGGCCAACGTGCGTCTCGGCAACGGCCAAGTGCTCGACGGCGTGAGCGTGTACGGCGGGCCGGTG---CTCCAGT
CCGGCAAAATGTACGAGCTGGTATACGCCGGGGCAACCAGTTACTCGGCGTCGACGTGCCTCGACGGGTCGCTGGACCAG
GCGGCCGTGCGCGGGAAGATCGTGGTGTGCGACCGCGGCGTGAACTCGCGCGCCGCCAAGGGCGACGTGGTTCACCGCGC
GGGCGCCGCCGGGATGGTGCTCGCCAACGGGGCGTTCGACGGGGAGGGCCTCGTAGCCGACTGCCACGTCCTGCCAGCCA
CCGCCGTCGGTGCAGCGGCCGGCGAGAAGCTCCGTAAGTACATCGCGTCGTCCACCCCGCAGAAGCCGGCCACGGGCACC
ATCCTGTTCGAGGGCACTCACCTCGGCGTGCACCCGGCGCCGGTGGTGGCGGCGTTCTCGGCGCGCGGCCCGAACCCCCA
ATCTCCAGAGACACTCAAGCCGGACCTCATAGCGCCCGGCCTGAACATCCTCGCCGCGTGGCCCAGCGGCGTCGGCCCGG
CCGGCATTCCCTCCGACGGCCGGCGCACGGAGTTCAACATCCTCTCCGGCACATCCATGGCGTGCCCGCACGTCTCCGGC
CTGGCGGCGCTGCTCAAGGCGGCGCACCCGACGTGGAGCCCCGCGGCCATCAAGTCGGCGCTCATGACCACGGCCTACAC
CAGGGACAACAGCAACGGCACCATGCTCGAGGAGTCGACCGGCAAGGTGGCCGACGTGTTCGACTTCGGCGCCGGGCACG
CGGACCCGATGCGCGCCATGGACCCGGGCCTCGTCTACGACATCGCGCCCGCGGACTACGTCAACTTCCTCTGCAACCTC
AACTACACGGAGCAGAACGTCCGGGCGATCACGCGGCGCCGGGCCGACTGCCGCGGCGCGCGCCGCGCCGGGCACGCCGG
CAACCTCAACTACCCGTCCCTGTCCGCCATGTTCGTCGCGGACGGCGGGAAGGCGAGGATGAGGACCCACTTCATCCGCA
CGGTGACCAATGTGGGCGGCGGCAGGTCGGCGTACCGCGCCACCGTGAGGGCGCCGGAGGGGTGCAATGTGACGGTGCGG
CCCGACCGGCTGGCGTTCCGGCGCGACGGGCAGAAGCTCAGCTTCACAGTACACGTGGAGGCCGCGGCGCGGGCGAAGAT
GGAGCCCGGGAGCTCGCAGGTGAGGAGCGGGGCGCTGACGTGGAGCGACGGCCGGCACGCCGTCGTGAGCCCGATCGTGG
TGACGTTGCAAGCGCCAGTGCAGTAGGCCGGCCGGCTCACTGAAAAGATC---------------GATCGATCGATCGAG
CAGGCCAAGTTAACACGATCTCCGGCATGTAGACCACGTACTGTACT-----TACTACTAGTGGT----------TATGA
TTTGGATCAAGAGCTTTTTCTTA---------GGACAGAGTTGCGTGCCATCTCGTCTTATACAACAAGTACTACTAACA
GCTACTGGTAATATCATAACATCGCA---------GTATAAA---TACACGGTTAATTAACCTGCACCCTACATACAATT
AACATATGGACACACTAACAATTGCTACGAAAAT----TACAGATGTTTCATCCTTCTTTTGCCGGATTAACTTGAGAGG
ATTTGTAGCTCTCGAGGCCACCGTACGCCCTGAGC------------------------------------ATTGCAATC
CATCCACGGTGATGCTCTC---CTATGCCTTGGCGTTCCAGAGCTGGCTGAGCTCCCCTCTCTGCGCGCCCAGCGCAGCG
ATGGTTCCTGCAACATCAATTTCAGACCACAAGATCAACCCATAG---TACATGCCAAGAGCTCGAGATTTCTAAAAGTC
GGCGCCATGGCCGGACTGGGCTGCTTGGTGATGGTACCTAGCGTACAGGGGACGAGGTAGAGCAGGGCTGGCTGGCCGCT
CTTCATCAGGTACAGGCCGACATACGTGCATGACAGCCCTGCATCGTCAAATTTGGGCTAGCTA--TCAGTTAGTAACAG
CTTATGGCACTTGCAAAGGTGGTTATC-TATCACGAGGTTCAGAAATTTGGACATACCAACTGCGTAGCCGATCATGACG
TAGGGGAAATAACCGTTGCCCACGCCCTTCCCGTGCGATCTGTCAAATCTGCATCATGCAACCCAGGTGAATGTCGGCAA
CATTTGGTTCAAGAGGAATGGGGTTCAGAAACTCCTTCCGTGTGTGGTGTTTTA-----------TTACCTGAAGCTGAA
GGCGACGAGGAGCCCTGGGAAGAGGATGTCGCCGAAGCCGATCATGTCGTAGCCGTTCCACACGTCGAACTCCTTGGG
>chr3A_484
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---TGTCTTTGGCGATTTCAACTGCAACACTTTTCATGGTTAGGTTTGTAAAAAAGGAGATAATTACTCTGTC--AAGGT
ACTACTACCAATGCAGCAGTTACCAAAGCGTGCCTACTCTTGGAGTACAAACTTGCATG--TTTCAACCCGTGACAGGCA
AAAACAACACACGTCTGGACGTACAAACAAGCTTTTTCTTCGAGTGGGGGCACGTACATACAAACAACGGGGCTAACCAA
CAGCCGATCAAGAGTCCAAACGAGTGCTGACCCACCCACACGGCGGGGTCGGCCCGCCAAATCCATCCAAACCCACCGCA
CCCCTCTGCAAGATGACTGACTTCAGTCCGGTCCGGTCCGGTCCAGCCCGGCGAGCCAGAGCCACACCGCCTCTCTGCTC
TGCTCCATCGTACGCCACGGCACCACCACCACCACCACGCTGTCTCCTTGACCTTTACCCGAGCAAAGGCAGGCGCTGCG
CGGCTTTCCCCTCCGCCGCTCCACTCCACTCCACTCCCTGCTCCCCAATCTCGCCCCCGATCCGCCATTGCGCAATGCCG
CGCCATCTGCTGCTC------CCGCTCCTC---------CTCGTCGCCGCGGTGGGCGCCTCCGGCGGGGACGCGGGAGG
CGAGAGGACGTACATCGTGCGGGTGGACGCCGACGCGAAGCCGTCGGCTTTCCCGACCCACGCGCACTGGTACGAGTCGG
CGGTGCTGGCGGCGTCCGGGGGCGGCGGGGGGTGGCCCGAGGGCGGCCCGCTGATCCACACCTACTCGTCGGCGCTCCAT
GGGTTCTCCGCGCGGATGTCGCCGTCGGCCGCGGCGGCGCTGGCCGGCGCCCGCGGGGTGGCGGCCGTGCTGCCGGAGCG
CGTCCGCTGCCTGGACACCACGCGCTCGCCGCGGTTCCTCGGGATGCTCTCCTCCCCGCCCTCGGCCATCCTCGCCGACT
CCGACTTCGGCTCCGACCTCGTCATCGCCGTCATCGACACCGGCATCTCGCCCGCGCACCGCAGCTTCCGCGACCGCGGC
CTCGGCCCGGTCCCGCCCAGGTGGCGCGGGGCGTGCGCGTCCGGGCCCGGCTTCCCGCCCGGCTCCTGCAACCGCAAGCT
CGTCGGGGCGCGCTTCTTCTCCGCGGGCTACGAGGCCACCTCCGGCCGGATGAACGAGACCGCCGAGGTCAGGTCGCCGC
TCGACAACGACGGCCACGGCACCCACACGGCCTCCATCGCCGCGGGCCGCTACGTGTTCCCGGCGTCCACCCTCGGCTAC
GCCCGCGGCGTCGCCTCCGGGATGGCGCCCAAGGCGCGCCTCGCCGCGTACAAGGTGTGCTGGGCGGGCGGCTGCTTCGA
CTCCGACATCCTCGCGGCCTTCGACGCCGCCGTCGCTGACGGCGTCGACGTTGTTTCTCTCAGCGTCGGCGGTGCCGTGG
TGCCGTACTATCTCGACGCCATCGCGATTGGGGCGTTCGGCGCGACAGAGGCTGGCATCGTTGTGTCTGCTTCGGCCGGC
AATGGCGGCCCAGGTGGGCTCTCGGTGACCAATGTGGCGCCCTGGATGACCACCGTAGGCGCCGGGTCCATGGACCGCGC
CTTCCCGGCCAACGTGCGCCTCGGCAACGGCCAAGTGCTCGACGGGGTGAGCGTGTACGGCGGGCCGGTG---CTCCAGT
CCGGCAAAATGTACGAGCTGGTGTACGCGGGGGCAACCAGTTACTCTGCGTCGACGTGCCTCGACGGGTCGCTGGACCAG
GCGGCCGTGCGCGGGAAGATCGTGGTGTGCGACCGCGGCGTGAACTCGCGCGCCGCCAAGGGCGACGTGGTTCACCGCGC
GGGCGCCGCCGGGATGGTGCTCGCCAACGGGGCGTTCGACGGGGAGGGCCTGGTGGCCGACTGCCACGTCCTGCCAGCCA
CCGCCGTCGGTGCAGCCGCCGGTGAGAAGCTCCGTAAGTACATCGCGTCGTCCACCCCGCAGAAGCCGGCCACGGGCACC
ATCGTGTTCGAAGGCACCCACCTCGGCGTGCACCCAGCGCCGGTGGTGGCGGCGTTCTCGGCGCGCGGCCCGAACCCCCA
ATCTCCAGAGACACTCAAGCCGGACCTGATAGCCCCCGGCCTGAACATCCTCGCCGCGTGGCCCAGCGGCGTCGGCCCGG
CAGGCATCCCCTCGGACGGCCGGCGCACGGAGTTCAACATCCTCTCCGGCACGTCCATGGCCTGCCCGCACGTCTCCGGC
CTGGCGGCGCTGCTGAAGGCGGCGCACCCGACGTGGAGCCCCGCGGCCATCAAGTCGGCGCTCATGACCACGGCCTACAC
CAGGGACAACAGTAACGGCACGATGCTCGACGAGTCCACCGGCAAGGTGGCGGACGTGTTCGACTTCGGCGCGGGGCACG
TGGACCCGATGCGCGCCATGGACCCGGGCCTCGTCTACGACATCGCGCCGGCGGACTACGTCAGCTTCCTCTGCAACCTC
AACTACACGGGGCAGAACATCCGGGCGATCACGCGGCGGCAGGCCGACTGCCGGGGCGCGCGCCGCGCCGGGCACGCCGG
CAACCTCAACTACCCGTCCCTCTCCGTCACGTTCGTGGCGGACGGCGCGAGGGCGAAGATGAGGACCCACTTCATCCGGA
CGGTGACCAACGTGGGCGGCGGCAGGTCGGCCTACCGCGCGACCGTGAGGTCGCCGGAGGGGTGCAATGTCACGGTGCGG
CCCGACCGGCTGGCGTTCCGGCGCGACGGGCAGAAGCTGAGCTTCACGGTGCACGTGGAGGCCGCGGCGCGGGCGAGGAT
GGAGCCCGGCAGCTCCCTGGTGAGGAGCGGGGCGCTGACGTGGGGCGACGGCAGGCACGCCGTGGTGAGCCCGATCGTGG
TGACACTGCAAGCGCCAGTGCAGTAGGCATGCAATGCAAGCTCGCCATGAGAAGCTTGATGGATGGATGGA---------
---GCCAAGTTGACACGATCTCCGGCATGTAGAGACTACGTAATCTACTTACTACTACTAGTGGC----------TATGA
TTTGGATCAAGAGCTTGTTCTTAGGGAAGATTGGACAGAGTTGCGTGCCATCTCGTCTTATACAACA-GTATTACTAACA
GCTACTAGTATAGTATAGTGTACTACTATAACATCGTATAAA---TACATGGGTAATTAACCTGCACCC----TACAATT
AACATATGGACACACTAACAATCGCTACGAAATTACAGTACAGATGTTTCATCTTTCTTTTGCCGGATTAACTTGAGAGG
ATCTGTAGCTCTCGAGGCCACCGTACGCCCGGAGCCAAGGCTGGGTGTCAACTACGTACTACGGAGTG---------TTC
CATCCACGGTGACGCTCTC---CTATGCCTTGGCGTTCCAGAGCTGGCTGAGCTCCCCTCGCTGCGCGCCCAGCCCAACG
ATGGTTCCTGCAAGACCAATTTCAGACCACAAGATCAACCCATAT-------------GAGCTCGAGA-TTCTGCATGTT
GGCGCCATGGCCGGACTGGGCTGGTTGGCAATGGTACCTAGCGTACAGGGGACGAGGTAGAGCAGGGCCGGCTGGCCGCT
CTTCATCAGGTACAGGCCAACATACGTGAATGACAGGCCTACATCGTCAATTTTGGGGTAGTTATATCAGTTAGCAACAG
CTTCCTAATGTTGATGGCACTAGGTTGTTGTCACGAGGTTCAGGAAATTGGGCATACCAAACGCGTAGCCGATCATGACG
TAGGGGAAATAACCGTTGGCCACACCCTTGCCGTGTGCTCTGTCATATCTGCATCATGCAGCCC---------AGCAGCA
GCCGGTAATTATGTTGTGTTGTGTCCAACAGAGGAAGGAAGGTGGGGATTCAGGCCCCGTGCTTCTTACCTGAAGCTGAA
GGCGACGAGGAGCCCAGGGAAGAGGATGTCCCCGAAGCCGATCATGTCGTAGCCGTTCCACACGTCGAACTCCTTGGG
>chr5D_1528
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--------------------------------------------------CTTCCCGCCCGGCTCCTGCAACCGCAAGCT
CGTCGGGGCACGCTTCTTCTCCGCGGGCTACGAGGTCACCTCCGGCCGGATGAACGAGACCATCGAGGTCGGGTCGCCGC
TCAACAACGACGGCCAGGGGACC-ACACGGCCTCGATCGCCGTGGGCCGCTACGTGTTCCCGGCATCCACCCTCGGCTAC
GCGCGCGGCGTGGCATCCAGGATGGCGCCTAAGGTGCGCCTCTCCGCGTACAAGGTGTTCTGGGTGGGCGGCTGCTTCGA
CTCCGACATCCTCGCAGCCTTCGATTCCGCCGTTGCTGATGGCGTTGATGTTGTTTCTCTCAGCGTTGGTGTTGCCGTGG
TGCCATAATATCTCGACGCCGTCGCAATCGGGGTGTTTGGCGCGACAAAGGCTAGCATCGTCGTGTCCGCTTCGGCCGGC
AATGGCGGTCCAGGTGGGCTCTCGGTGACCAATGTGGCGTCCTGGATGACCACCGTAGGCGCTGGGTCCATGGACCGCGC
CTTCCCGGCCAACGTGCGTCTCGGCAACGGCCAAGTGCTCGACAGCGTGAGCGTGTACAGAGGGGCCGGTGCTCTCCAAT
CCGGCAAAATGTACGAGCTGGTATACGCCGGGGC------TTACTCGGCGTCGACGTGCGTCGACGGGTCGCTGGACCAG
GCGGCCGTGCGCGGAAAGATCGTGGTGTGCGCGGGAAGAG-------------------------CGTGGTTCACCGCGC
GGGCACCGCAAGGATGGTGCTCGCCAATGGGGCGTTCGACGGGGAGGGCCCGGTGGCCGACTGCCATGTCCTGCCAGCCA
CCGCCGTCGGTGCCGCCGCCGGCAAGAAGCTCTGTAAGTACACCACGT--------------------------------
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------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----SSSSSSS------------
-SS--------------------------S-------S---SS------S-----------------------SS-----
----------S----S--S-------------------------------------------------------------
----------S----------------------------------------S----------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--S------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-----------S-S-SSSSSS-------------------------------S-------------------S-------
---------------------------S----------------------------------------------------
---------S---------------------------------------------------------SS-S--S------
--------------------------------------------------------------------------------
--------S---S-S-----------------------------------------------------------------
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-----------------------------------------------------------------------S--S-----
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---------------S--------------------------------------------------------S-------
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--S-----------------------------------------------------------------------------
S------------------------SS-----------------------------------------------------
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-----------------------------------------------------------------------S--------
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--------------------------------------------------------------------------------
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--------------------------------------SS-------S--------------------------------
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----------------------S-----------------------S-----------S---------------------
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--------S-SS----S-SSSS----------------------------------------------------------
-----------------------------------S---------SSS------------------S------S------
---S-----S----------------------------------------------------------------------
--------------------------------------------S---S-----SS---------S--------------
----------S--------------------------S------------------------------------------
-------------------------------------S----------------------------SS-S-SS-------
-------------------SSSSSSS-------------------------------S----------------------
------------------------------------------------------------------------------
>forward_233
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TCTACTCGCTCCCACCATGA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_1964
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------TACAGAGGCTGGCATCGTC------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_340
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TGCCGGGAATGAGTCGAAAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_2090
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------TAACGTGCGTCTCGGCAAC----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>forward_1268
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CGCTGATCCACACCTACTCC------------
--------------------------------------------------------------------------------
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>reverse_2672
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------ATTCAACATCCTCTCCGGCA-----------------------------
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------------------------------------------------------------------------------
>forward_1269
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GCTGATCCACACCTACTCCG-----------
--------------------------------------------------------------------------------
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>reverse_2940
--------------------------------------------------------------------------------
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-----------------------------------------------------------CTCAACTTCCTCTGCAACCTG
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_1934
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CCGTGG
TGCCGTACTATCTG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_3543
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGGACAGAGTTGCGTTCCAT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
