Multiple sequence alignment - TraesCS3D01G400600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G400600 chr3D 100.000 3542 0 0 1 3542 515677502 515673961 0.000000e+00 6541.0
1 TraesCS3D01G400600 chr3D 95.491 377 16 1 3166 3542 442772707 442773082 5.060000e-168 601.0
2 TraesCS3D01G400600 chr3D 95.225 377 18 0 3166 3542 576575784 576576160 6.540000e-167 597.0
3 TraesCS3D01G400600 chr3D 93.548 93 5 1 2403 2495 515668319 515668228 1.710000e-28 137.0
4 TraesCS3D01G400600 chr3D 100.000 42 0 0 2743 2784 587197741 587197782 1.050000e-10 78.7
5 TraesCS3D01G400600 chr3D 97.297 37 1 0 152 188 515677314 515677278 2.950000e-06 63.9
6 TraesCS3D01G400600 chr3D 97.297 37 1 0 189 225 515677351 515677315 2.950000e-06 63.9
7 TraesCS3D01G400600 chr3B 93.847 2763 112 18 1 2734 678172398 678169665 0.000000e+00 4108.0
8 TraesCS3D01G400600 chr3B 92.228 386 21 6 2782 3165 678169667 678169289 4.020000e-149 538.0
9 TraesCS3D01G400600 chr3B 95.484 155 7 0 1389 1543 23382152 23382306 7.590000e-62 248.0
10 TraesCS3D01G400600 chr3B 94.262 122 6 1 2403 2524 678149047 678148927 6.040000e-43 185.0
11 TraesCS3D01G400600 chr3B 92.391 92 7 0 231 322 749148527 749148618 7.980000e-27 132.0
12 TraesCS3D01G400600 chr3B 100.000 37 0 0 189 225 678172249 678172213 6.340000e-08 69.4
13 TraesCS3D01G400600 chr3B 97.297 37 1 0 152 188 678172212 678172176 2.950000e-06 63.9
14 TraesCS3D01G400600 chr3A 92.391 2037 90 35 640 2646 649939778 649937777 0.000000e+00 2843.0
15 TraesCS3D01G400600 chr3A 84.645 521 41 16 2653 3165 649937529 649937040 1.910000e-132 483.0
16 TraesCS3D01G400600 chr3A 96.000 150 6 0 1 150 649940487 649940338 9.820000e-61 244.0
17 TraesCS3D01G400600 chr3A 82.022 267 22 8 317 581 649940282 649940040 1.670000e-48 204.0
18 TraesCS3D01G400600 chr3A 94.262 122 6 1 2403 2524 649854972 649854852 6.040000e-43 185.0
19 TraesCS3D01G400600 chrUn 96.588 381 12 1 3162 3542 108805976 108805597 6.450000e-177 630.0
20 TraesCS3D01G400600 chr5D 96.774 372 11 1 3171 3542 544617554 544617184 1.400000e-173 619.0
21 TraesCS3D01G400600 chr5D 94.253 87 5 0 234 320 82181490 82181576 2.220000e-27 134.0
22 TraesCS3D01G400600 chr5D 94.253 87 5 0 235 321 104973015 104972929 2.220000e-27 134.0
23 TraesCS3D01G400600 chr5D 95.556 45 2 0 2743 2787 220694016 220693972 4.900000e-09 73.1
24 TraesCS3D01G400600 chr5D 97.059 34 1 0 1837 1870 480362379 480362346 1.370000e-04 58.4
25 TraesCS3D01G400600 chr6D 95.550 382 16 1 3162 3542 41907502 41907883 8.410000e-171 610.0
26 TraesCS3D01G400600 chr6D 95.550 382 15 2 3162 3542 430883186 430883566 8.410000e-171 610.0
27 TraesCS3D01G400600 chr6D 95.238 378 18 0 3165 3542 347437581 347437958 1.820000e-167 599.0
28 TraesCS3D01G400600 chr1D 96.237 372 14 0 3171 3542 446557900 446557529 8.410000e-171 610.0
29 TraesCS3D01G400600 chr1D 95.402 87 4 0 235 321 115990007 115989921 4.770000e-29 139.0
30 TraesCS3D01G400600 chr6A 94.805 385 17 3 3159 3542 53154209 53153827 6.540000e-167 597.0
31 TraesCS3D01G400600 chr2A 95.506 89 4 0 235 323 572446254 572446342 3.690000e-30 143.0
32 TraesCS3D01G400600 chr4D 94.318 88 5 0 235 322 497036287 497036374 6.170000e-28 135.0
33 TraesCS3D01G400600 chr4A 93.333 90 5 1 234 323 427133142 427133054 7.980000e-27 132.0
34 TraesCS3D01G400600 chr5A 91.579 95 6 2 235 328 40096850 40096757 2.870000e-26 130.0
35 TraesCS3D01G400600 chr5A 94.231 52 1 2 2743 2793 469116078 469116028 1.050000e-10 78.7
36 TraesCS3D01G400600 chr7D 95.833 48 2 0 2743 2790 535726753 535726706 1.050000e-10 78.7
37 TraesCS3D01G400600 chr7D 95.652 46 2 0 2743 2788 566448846 566448891 1.360000e-09 75.0
38 TraesCS3D01G400600 chr5B 97.778 45 1 0 2743 2787 600518775 600518819 1.050000e-10 78.7
39 TraesCS3D01G400600 chr7B 95.745 47 2 0 2743 2789 595801052 595801006 3.790000e-10 76.8
40 TraesCS3D01G400600 chr1A 100.000 40 0 0 2743 2782 560378160 560378199 1.360000e-09 75.0
41 TraesCS3D01G400600 chr1A 95.652 46 2 0 2743 2788 569903486 569903441 1.360000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G400600 chr3D 515673961 515677502 3541 True 2222.933333 6541 98.1980 1 3542 3 chr3D.!!$R2 3541
1 TraesCS3D01G400600 chr3B 678169289 678172398 3109 True 1194.825000 4108 95.8430 1 3165 4 chr3B.!!$R2 3164
2 TraesCS3D01G400600 chr3A 649937040 649940487 3447 True 943.500000 2843 88.7645 1 3165 4 chr3A.!!$R2 3164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 1126 0.241749 CAAGGCTCAAGCAATCGCAA 59.758 50.0 4.13 0.0 44.36 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2559 2805 0.458543 TCGACTTGAAGCTCATCGGC 60.459 55.0 3.62 0.0 31.81 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.616510 GGAGGAAGTTGTGGATCTGGTG 60.617 54.545 0.00 0.00 0.00 4.17
69 70 0.835941 GGATCTGGTGGCTGATGACT 59.164 55.000 0.00 0.00 0.00 3.41
142 143 5.841957 ATTGACCTTATTTGATGTGAGCC 57.158 39.130 0.00 0.00 0.00 4.70
143 144 4.299586 TGACCTTATTTGATGTGAGCCA 57.700 40.909 0.00 0.00 0.00 4.75
267 268 5.699458 CGTCCCATAATATAGGAGCGTTTTT 59.301 40.000 0.00 0.00 0.00 1.94
306 307 8.126700 GTGTCAAAAACGGTCTTATATTATGGG 58.873 37.037 0.00 0.00 0.00 4.00
368 369 5.354792 ACTCTAGAACGACCAGTTATGAGAC 59.645 44.000 0.00 0.00 44.35 3.36
738 962 0.677288 AACGGTCGACAGGATGAACA 59.323 50.000 19.84 0.00 39.69 3.18
779 1003 4.024048 AGCTGGTCGTGTACAAAAGAATTG 60.024 41.667 0.00 0.00 0.00 2.32
798 1022 0.382636 GCGTTGAATATGTACCGCGC 60.383 55.000 0.00 0.00 36.97 6.86
804 1028 3.462982 TGAATATGTACCGCGCTCAAAT 58.537 40.909 5.56 0.00 0.00 2.32
805 1029 3.247411 TGAATATGTACCGCGCTCAAATG 59.753 43.478 5.56 0.00 0.00 2.32
865 1096 2.281484 GCGAAGGGTGGCAACTCA 60.281 61.111 0.97 0.00 37.61 3.41
867 1098 2.317609 CGAAGGGTGGCAACTCACG 61.318 63.158 0.97 1.83 38.90 4.35
895 1126 0.241749 CAAGGCTCAAGCAATCGCAA 59.758 50.000 4.13 0.00 44.36 4.85
956 1202 2.983592 CGTTTCCACTGGCACCCC 60.984 66.667 0.00 0.00 0.00 4.95
960 1206 3.783362 TTCCACTGGCACCCCAACG 62.783 63.158 0.00 0.00 41.58 4.10
1041 1287 2.202690 TACAACGCGGCCATCTCG 60.203 61.111 12.47 2.53 0.00 4.04
1135 1381 1.676967 GACGAGTACACCCTCCCGT 60.677 63.158 0.00 0.00 0.00 5.28
1338 1584 1.687493 CTGGACCTCCCTCCTCACC 60.687 68.421 0.00 0.00 35.38 4.02
1382 1628 3.710722 CTCGGCCCTGCAGGTCTT 61.711 66.667 30.63 0.00 38.54 3.01
1566 1812 1.079405 CATGTACGCCAAGACCGGT 60.079 57.895 6.92 6.92 0.00 5.28
1740 1986 2.224066 GGACTACATCACCTTCATCGGG 60.224 54.545 0.00 0.00 0.00 5.14
1743 1989 0.107508 ACATCACCTTCATCGGGCTG 60.108 55.000 0.00 0.00 0.00 4.85
2139 2385 3.406595 GATCACCAAGGAGCCCGGG 62.407 68.421 19.09 19.09 0.00 5.73
2559 2805 2.183555 GTAGGTTCAGCCGGTCCG 59.816 66.667 3.60 3.60 43.70 4.79
2655 3154 4.165779 GCATTATTTACAGCACACCACAC 58.834 43.478 0.00 0.00 0.00 3.82
2660 3159 0.462937 TACAGCACACCACACCACAC 60.463 55.000 0.00 0.00 0.00 3.82
2661 3160 2.124320 AGCACACCACACCACACC 60.124 61.111 0.00 0.00 0.00 4.16
2662 3161 2.439338 GCACACCACACCACACCA 60.439 61.111 0.00 0.00 0.00 4.17
2663 3162 2.770589 GCACACCACACCACACCAC 61.771 63.158 0.00 0.00 0.00 4.16
2664 3163 1.377856 CACACCACACCACACCACA 60.378 57.895 0.00 0.00 0.00 4.17
2665 3164 1.377987 ACACCACACCACACCACAC 60.378 57.895 0.00 0.00 0.00 3.82
2666 3165 2.118404 CACCACACCACACCACACC 61.118 63.158 0.00 0.00 0.00 4.16
2667 3166 2.273776 CCACACCACACCACACCA 59.726 61.111 0.00 0.00 0.00 4.17
2668 3167 2.118404 CCACACCACACCACACCAC 61.118 63.158 0.00 0.00 0.00 4.16
2669 3168 1.377856 CACACCACACCACACCACA 60.378 57.895 0.00 0.00 0.00 4.17
2677 3179 2.483877 CACACCACACCACATACACATC 59.516 50.000 0.00 0.00 0.00 3.06
2737 3240 4.184629 CAAGTACTCCATGCTTGTACTCC 58.815 47.826 17.67 0.00 43.83 3.85
2738 3241 2.766828 AGTACTCCATGCTTGTACTCCC 59.233 50.000 13.97 0.00 41.86 4.30
2741 3244 0.824109 TCCATGCTTGTACTCCCTCG 59.176 55.000 0.00 0.00 0.00 4.63
2743 3246 0.537188 CATGCTTGTACTCCCTCGGT 59.463 55.000 0.00 0.00 0.00 4.69
2744 3247 0.537188 ATGCTTGTACTCCCTCGGTG 59.463 55.000 0.00 0.00 0.00 4.94
2747 3250 1.547372 GCTTGTACTCCCTCGGTGTTA 59.453 52.381 0.00 0.00 31.55 2.41
2748 3251 2.028748 GCTTGTACTCCCTCGGTGTTAA 60.029 50.000 0.00 0.00 31.55 2.01
2749 3252 3.555586 GCTTGTACTCCCTCGGTGTTAAA 60.556 47.826 0.00 0.00 31.55 1.52
2751 3254 4.686191 TGTACTCCCTCGGTGTTAAAAA 57.314 40.909 0.00 0.00 31.55 1.94
2755 3258 2.874086 CTCCCTCGGTGTTAAAAACGTT 59.126 45.455 2.40 0.00 0.00 3.99
2756 3259 2.871633 TCCCTCGGTGTTAAAAACGTTC 59.128 45.455 0.00 0.00 0.00 3.95
2758 3261 3.313249 CCCTCGGTGTTAAAAACGTTCTT 59.687 43.478 0.00 0.00 0.00 2.52
2759 3262 4.511082 CCCTCGGTGTTAAAAACGTTCTTA 59.489 41.667 0.00 0.00 0.00 2.10
2760 3263 5.179929 CCCTCGGTGTTAAAAACGTTCTTAT 59.820 40.000 0.00 0.00 0.00 1.73
2761 3264 6.368516 CCCTCGGTGTTAAAAACGTTCTTATA 59.631 38.462 0.00 0.00 0.00 0.98
2762 3265 7.064966 CCCTCGGTGTTAAAAACGTTCTTATAT 59.935 37.037 0.00 0.00 0.00 0.86
2764 3267 9.815936 CTCGGTGTTAAAAACGTTCTTATATTT 57.184 29.630 0.00 0.00 0.00 1.40
2775 3278 8.943909 AACGTTCTTATATTTTAGGACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
2776 3279 7.498443 ACGTTCTTATATTTTAGGACAGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
2777 3280 7.343833 ACGTTCTTATATTTTAGGACAGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
2778 3281 7.868415 CGTTCTTATATTTTAGGACAGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
2779 3282 8.706521 GTTCTTATATTTTAGGACAGAGGGAGT 58.293 37.037 0.00 0.00 0.00 3.85
2780 3283 9.947189 TTCTTATATTTTAGGACAGAGGGAGTA 57.053 33.333 0.00 0.00 0.00 2.59
2781 3284 9.589461 TCTTATATTTTAGGACAGAGGGAGTAG 57.411 37.037 0.00 0.00 0.00 2.57
2793 3296 8.852135 GGACAGAGGGAGTAGTATATATATTGC 58.148 40.741 0.00 0.00 0.00 3.56
2828 3331 0.745845 CTCCATCCTCTTGCAACCGG 60.746 60.000 0.00 0.00 0.00 5.28
2870 3373 0.321298 TCCGGTAAGGCAAGAACAGC 60.321 55.000 0.00 0.00 40.77 4.40
3119 3622 3.011517 TGCCCAGGCTTCTCCTCC 61.012 66.667 10.58 0.00 45.52 4.30
3125 3628 2.364448 GGCTTCTCCTCCCCTCGT 60.364 66.667 0.00 0.00 0.00 4.18
3141 3649 0.109919 TCGTGCAGCCGCTATATACG 60.110 55.000 0.00 2.22 39.64 3.06
3168 3676 3.121019 ACGCGAGTCTCTATGGGC 58.879 61.111 15.93 0.00 44.19 5.36
3169 3677 1.753078 ACGCGAGTCTCTATGGGCA 60.753 57.895 15.93 0.00 44.19 5.36
3170 3678 1.109920 ACGCGAGTCTCTATGGGCAT 61.110 55.000 15.93 0.00 44.19 4.40
3171 3679 0.665670 CGCGAGTCTCTATGGGCATG 60.666 60.000 0.00 0.00 0.00 4.06
3172 3680 0.390860 GCGAGTCTCTATGGGCATGT 59.609 55.000 0.00 0.00 0.00 3.21
3173 3681 1.202580 GCGAGTCTCTATGGGCATGTT 60.203 52.381 0.00 0.00 0.00 2.71
3174 3682 2.743183 GCGAGTCTCTATGGGCATGTTT 60.743 50.000 0.00 0.00 0.00 2.83
3175 3683 2.868583 CGAGTCTCTATGGGCATGTTTG 59.131 50.000 0.00 0.00 0.00 2.93
3176 3684 3.209410 GAGTCTCTATGGGCATGTTTGG 58.791 50.000 0.00 0.00 0.00 3.28
3177 3685 2.578021 AGTCTCTATGGGCATGTTTGGT 59.422 45.455 0.00 0.00 0.00 3.67
3178 3686 3.010584 AGTCTCTATGGGCATGTTTGGTT 59.989 43.478 0.00 0.00 0.00 3.67
3179 3687 4.227300 AGTCTCTATGGGCATGTTTGGTTA 59.773 41.667 0.00 0.00 0.00 2.85
3180 3688 4.335594 GTCTCTATGGGCATGTTTGGTTAC 59.664 45.833 0.00 0.00 0.00 2.50
3181 3689 4.018870 TCTCTATGGGCATGTTTGGTTACA 60.019 41.667 0.00 0.00 0.00 2.41
3182 3690 4.865905 TCTATGGGCATGTTTGGTTACAT 58.134 39.130 0.00 0.00 39.27 2.29
3183 3691 5.268387 TCTATGGGCATGTTTGGTTACATT 58.732 37.500 0.00 0.00 36.64 2.71
3184 3692 3.674528 TGGGCATGTTTGGTTACATTG 57.325 42.857 0.00 0.00 36.64 2.82
3185 3693 2.289320 TGGGCATGTTTGGTTACATTGC 60.289 45.455 0.00 0.00 36.64 3.56
3186 3694 2.345876 GGCATGTTTGGTTACATTGCC 58.654 47.619 11.53 11.53 41.20 4.52
3187 3695 1.991965 GCATGTTTGGTTACATTGCCG 59.008 47.619 0.00 0.00 36.64 5.69
3188 3696 2.352225 GCATGTTTGGTTACATTGCCGA 60.352 45.455 0.00 0.00 36.64 5.54
3189 3697 3.675775 GCATGTTTGGTTACATTGCCGAT 60.676 43.478 0.00 0.00 36.64 4.18
3190 3698 4.493547 CATGTTTGGTTACATTGCCGATT 58.506 39.130 0.00 0.00 36.64 3.34
3191 3699 4.167554 TGTTTGGTTACATTGCCGATTC 57.832 40.909 0.00 0.00 0.00 2.52
3192 3700 3.570125 TGTTTGGTTACATTGCCGATTCA 59.430 39.130 0.00 0.00 0.00 2.57
3193 3701 4.165779 GTTTGGTTACATTGCCGATTCAG 58.834 43.478 0.00 0.00 0.00 3.02
3194 3702 1.742831 TGGTTACATTGCCGATTCAGC 59.257 47.619 0.00 0.00 0.00 4.26
3195 3703 1.065551 GGTTACATTGCCGATTCAGCC 59.934 52.381 0.00 0.00 0.00 4.85
3196 3704 2.017049 GTTACATTGCCGATTCAGCCT 58.983 47.619 0.00 0.00 0.00 4.58
3197 3705 1.667236 TACATTGCCGATTCAGCCTG 58.333 50.000 0.00 0.00 0.00 4.85
3198 3706 0.035152 ACATTGCCGATTCAGCCTGA 60.035 50.000 0.00 0.00 0.00 3.86
3199 3707 0.379669 CATTGCCGATTCAGCCTGAC 59.620 55.000 0.00 0.00 0.00 3.51
3200 3708 0.749454 ATTGCCGATTCAGCCTGACC 60.749 55.000 0.00 0.00 0.00 4.02
3201 3709 2.514824 GCCGATTCAGCCTGACCC 60.515 66.667 0.00 0.00 0.00 4.46
3202 3710 2.202932 CCGATTCAGCCTGACCCG 60.203 66.667 0.00 0.61 0.00 5.28
3203 3711 2.202932 CGATTCAGCCTGACCCGG 60.203 66.667 0.00 0.00 0.00 5.73
3211 3719 4.135153 CCTGACCCGGCGAGTCTG 62.135 72.222 21.97 20.34 35.21 3.51
3212 3720 4.135153 CTGACCCGGCGAGTCTGG 62.135 72.222 21.97 10.28 41.11 3.86
3216 3724 4.394712 CCCGGCGAGTCTGGCTTT 62.395 66.667 9.30 0.00 40.05 3.51
3217 3725 2.577059 CCGGCGAGTCTGGCTTTA 59.423 61.111 9.30 0.00 33.73 1.85
3218 3726 1.144057 CCGGCGAGTCTGGCTTTAT 59.856 57.895 9.30 0.00 33.73 1.40
3219 3727 0.462047 CCGGCGAGTCTGGCTTTATT 60.462 55.000 9.30 0.00 33.73 1.40
3220 3728 0.652592 CGGCGAGTCTGGCTTTATTG 59.347 55.000 0.00 0.00 0.00 1.90
3221 3729 1.739035 CGGCGAGTCTGGCTTTATTGA 60.739 52.381 0.00 0.00 0.00 2.57
3222 3730 1.936547 GGCGAGTCTGGCTTTATTGAG 59.063 52.381 6.81 0.00 0.00 3.02
3223 3731 1.328986 GCGAGTCTGGCTTTATTGAGC 59.671 52.381 0.00 0.00 41.96 4.26
3232 3740 3.136808 GCTTTATTGAGCCGGTTTGAG 57.863 47.619 1.90 0.00 36.66 3.02
3233 3741 2.159379 GCTTTATTGAGCCGGTTTGAGG 60.159 50.000 1.90 0.00 36.66 3.86
3234 3742 2.122783 TTATTGAGCCGGTTTGAGGG 57.877 50.000 1.90 0.00 0.00 4.30
3235 3743 0.254747 TATTGAGCCGGTTTGAGGGG 59.745 55.000 1.90 0.00 0.00 4.79
3236 3744 1.497309 ATTGAGCCGGTTTGAGGGGA 61.497 55.000 1.90 0.00 0.00 4.81
3237 3745 1.497309 TTGAGCCGGTTTGAGGGGAT 61.497 55.000 1.90 0.00 0.00 3.85
3238 3746 1.452108 GAGCCGGTTTGAGGGGATG 60.452 63.158 1.90 0.00 0.00 3.51
3239 3747 3.140814 GCCGGTTTGAGGGGATGC 61.141 66.667 1.90 0.00 0.00 3.91
3240 3748 2.354729 CCGGTTTGAGGGGATGCA 59.645 61.111 0.00 0.00 0.00 3.96
3241 3749 1.750399 CCGGTTTGAGGGGATGCAG 60.750 63.158 0.00 0.00 0.00 4.41
3242 3750 1.750399 CGGTTTGAGGGGATGCAGG 60.750 63.158 0.00 0.00 0.00 4.85
3243 3751 2.054453 GGTTTGAGGGGATGCAGGC 61.054 63.158 0.00 0.00 0.00 4.85
3244 3752 2.054453 GTTTGAGGGGATGCAGGCC 61.054 63.158 0.00 0.00 0.00 5.19
3245 3753 2.546643 TTTGAGGGGATGCAGGCCA 61.547 57.895 5.01 0.00 0.00 5.36
3246 3754 2.091640 TTTGAGGGGATGCAGGCCAA 62.092 55.000 5.01 0.00 0.00 4.52
3247 3755 2.091640 TTGAGGGGATGCAGGCCAAA 62.092 55.000 5.01 0.00 0.00 3.28
3248 3756 1.305213 GAGGGGATGCAGGCCAAAA 60.305 57.895 5.01 0.00 0.00 2.44
3249 3757 0.904394 GAGGGGATGCAGGCCAAAAA 60.904 55.000 5.01 0.00 0.00 1.94
3269 3777 6.655078 AAAAACTCCAGATGCACATAGTTT 57.345 33.333 0.00 0.00 38.45 2.66
3270 3778 5.633830 AAACTCCAGATGCACATAGTTTG 57.366 39.130 11.46 0.00 36.21 2.93
3271 3779 3.614092 ACTCCAGATGCACATAGTTTGG 58.386 45.455 0.00 0.00 0.00 3.28
3272 3780 3.009473 ACTCCAGATGCACATAGTTTGGT 59.991 43.478 0.00 0.00 0.00 3.67
3273 3781 4.012374 CTCCAGATGCACATAGTTTGGTT 58.988 43.478 0.00 0.00 0.00 3.67
3274 3782 3.758023 TCCAGATGCACATAGTTTGGTTG 59.242 43.478 0.00 0.00 0.00 3.77
3275 3783 3.504863 CAGATGCACATAGTTTGGTTGC 58.495 45.455 0.00 0.00 0.00 4.17
3276 3784 2.493278 AGATGCACATAGTTTGGTTGCC 59.507 45.455 0.00 0.00 0.00 4.52
3277 3785 1.993956 TGCACATAGTTTGGTTGCCT 58.006 45.000 0.00 0.00 0.00 4.75
3278 3786 1.612950 TGCACATAGTTTGGTTGCCTG 59.387 47.619 0.00 0.00 0.00 4.85
3279 3787 1.669795 GCACATAGTTTGGTTGCCTGC 60.670 52.381 0.00 0.00 0.00 4.85
3280 3788 1.612950 CACATAGTTTGGTTGCCTGCA 59.387 47.619 0.00 0.00 0.00 4.41
3281 3789 2.231964 CACATAGTTTGGTTGCCTGCAT 59.768 45.455 0.00 0.00 0.00 3.96
3282 3790 2.231964 ACATAGTTTGGTTGCCTGCATG 59.768 45.455 0.00 0.00 0.00 4.06
3283 3791 0.602562 TAGTTTGGTTGCCTGCATGC 59.397 50.000 11.82 11.82 0.00 4.06
3284 3792 1.117142 AGTTTGGTTGCCTGCATGCT 61.117 50.000 20.33 0.00 0.00 3.79
3285 3793 0.668401 GTTTGGTTGCCTGCATGCTC 60.668 55.000 20.33 8.64 0.00 4.26
3286 3794 1.818959 TTTGGTTGCCTGCATGCTCC 61.819 55.000 20.33 16.11 0.00 4.70
3287 3795 2.362120 GGTTGCCTGCATGCTCCT 60.362 61.111 20.33 0.00 0.00 3.69
3288 3796 1.077501 GGTTGCCTGCATGCTCCTA 60.078 57.895 20.33 0.00 0.00 2.94
3289 3797 1.099879 GGTTGCCTGCATGCTCCTAG 61.100 60.000 20.33 7.55 0.00 3.02
3290 3798 0.393537 GTTGCCTGCATGCTCCTAGT 60.394 55.000 20.33 0.00 0.00 2.57
3291 3799 0.329261 TTGCCTGCATGCTCCTAGTT 59.671 50.000 20.33 0.00 0.00 2.24
3292 3800 0.393402 TGCCTGCATGCTCCTAGTTG 60.393 55.000 20.33 0.00 0.00 3.16
3293 3801 1.722636 GCCTGCATGCTCCTAGTTGC 61.723 60.000 20.33 3.90 35.67 4.17
3294 3802 0.393402 CCTGCATGCTCCTAGTTGCA 60.393 55.000 20.33 8.93 42.41 4.08
3300 3808 2.680312 TGCTCCTAGTTGCATGAGAC 57.320 50.000 0.00 0.00 33.94 3.36
3301 3809 1.901833 TGCTCCTAGTTGCATGAGACA 59.098 47.619 0.00 0.00 33.94 3.41
3302 3810 2.302733 TGCTCCTAGTTGCATGAGACAA 59.697 45.455 0.00 0.00 33.94 3.18
3303 3811 3.244526 TGCTCCTAGTTGCATGAGACAAA 60.245 43.478 0.00 0.00 33.94 2.83
3304 3812 3.126000 GCTCCTAGTTGCATGAGACAAAC 59.874 47.826 0.00 0.00 0.00 2.93
3305 3813 4.318332 CTCCTAGTTGCATGAGACAAACA 58.682 43.478 0.00 0.00 0.00 2.83
3306 3814 4.910195 TCCTAGTTGCATGAGACAAACAT 58.090 39.130 0.00 0.00 0.00 2.71
3307 3815 5.316167 TCCTAGTTGCATGAGACAAACATT 58.684 37.500 0.00 0.00 0.00 2.71
3308 3816 5.769662 TCCTAGTTGCATGAGACAAACATTT 59.230 36.000 0.00 0.00 0.00 2.32
3309 3817 6.265196 TCCTAGTTGCATGAGACAAACATTTT 59.735 34.615 0.00 0.00 0.00 1.82
3310 3818 6.925165 CCTAGTTGCATGAGACAAACATTTTT 59.075 34.615 0.00 0.00 0.00 1.94
3311 3819 6.592798 AGTTGCATGAGACAAACATTTTTG 57.407 33.333 0.00 2.77 46.61 2.44
3312 3820 6.339730 AGTTGCATGAGACAAACATTTTTGA 58.660 32.000 11.21 0.00 44.38 2.69
3313 3821 6.987992 AGTTGCATGAGACAAACATTTTTGAT 59.012 30.769 11.21 0.00 44.38 2.57
3314 3822 7.170320 AGTTGCATGAGACAAACATTTTTGATC 59.830 33.333 11.21 8.77 44.38 2.92
3315 3823 5.927689 TGCATGAGACAAACATTTTTGATCC 59.072 36.000 11.21 0.81 44.38 3.36
3316 3824 5.927689 GCATGAGACAAACATTTTTGATCCA 59.072 36.000 11.21 5.77 44.38 3.41
3317 3825 6.090358 GCATGAGACAAACATTTTTGATCCAG 59.910 38.462 11.21 5.48 44.38 3.86
3318 3826 5.531634 TGAGACAAACATTTTTGATCCAGC 58.468 37.500 11.21 0.52 44.38 4.85
3319 3827 5.068855 TGAGACAAACATTTTTGATCCAGCA 59.931 36.000 11.21 2.56 44.38 4.41
3320 3828 6.105397 AGACAAACATTTTTGATCCAGCAT 57.895 33.333 11.21 0.00 44.38 3.79
3321 3829 6.527423 AGACAAACATTTTTGATCCAGCATT 58.473 32.000 11.21 0.00 44.38 3.56
3322 3830 6.993902 AGACAAACATTTTTGATCCAGCATTT 59.006 30.769 11.21 0.00 44.38 2.32
3323 3831 6.961576 ACAAACATTTTTGATCCAGCATTTG 58.038 32.000 11.21 0.00 44.38 2.32
3324 3832 6.016943 ACAAACATTTTTGATCCAGCATTTGG 60.017 34.615 11.21 0.00 45.30 3.28
3325 3833 6.016943 CAAACATTTTTGATCCAGCATTTGGT 60.017 34.615 0.00 0.00 44.77 3.67
3326 3834 7.468906 CAAACATTTTTGATCCAGCATTTGGTT 60.469 33.333 0.00 0.00 44.77 3.67
3331 3839 2.262292 CCAGCATTTGGTTGCCCG 59.738 61.111 0.00 0.00 43.83 6.13
3332 3840 2.432972 CAGCATTTGGTTGCCCGC 60.433 61.111 0.00 0.00 43.83 6.13
3333 3841 2.916703 AGCATTTGGTTGCCCGCA 60.917 55.556 0.00 0.00 43.83 5.69
3334 3842 2.265424 GCATTTGGTTGCCCGCAT 59.735 55.556 0.00 0.00 36.60 4.73
3335 3843 1.375780 GCATTTGGTTGCCCGCATT 60.376 52.632 0.00 0.00 36.60 3.56
3336 3844 1.637478 GCATTTGGTTGCCCGCATTG 61.637 55.000 0.00 0.00 36.60 2.82
3337 3845 1.375780 ATTTGGTTGCCCGCATTGC 60.376 52.632 0.00 0.00 0.00 3.56
3338 3846 2.109517 ATTTGGTTGCCCGCATTGCA 62.110 50.000 9.69 0.00 36.84 4.08
3339 3847 2.109517 TTTGGTTGCCCGCATTGCAT 62.110 50.000 9.69 0.00 38.76 3.96
3340 3848 2.109517 TTGGTTGCCCGCATTGCATT 62.110 50.000 9.69 0.00 38.76 3.56
3341 3849 1.253593 TGGTTGCCCGCATTGCATTA 61.254 50.000 9.69 0.00 38.76 1.90
3342 3850 0.528249 GGTTGCCCGCATTGCATTAG 60.528 55.000 9.69 0.00 38.76 1.73
3343 3851 0.528249 GTTGCCCGCATTGCATTAGG 60.528 55.000 9.69 4.68 38.76 2.69
3344 3852 0.969917 TTGCCCGCATTGCATTAGGT 60.970 50.000 9.69 0.00 38.76 3.08
3345 3853 1.066257 GCCCGCATTGCATTAGGTG 59.934 57.895 9.69 0.00 0.00 4.00
3359 3867 5.366829 CATTAGGTGCACATATGACATGG 57.633 43.478 20.43 0.00 0.00 3.66
3360 3868 4.502105 TTAGGTGCACATATGACATGGT 57.498 40.909 20.43 0.00 0.00 3.55
3361 3869 2.646930 AGGTGCACATATGACATGGTG 58.353 47.619 20.43 14.40 0.00 4.17
3362 3870 2.025981 AGGTGCACATATGACATGGTGT 60.026 45.455 20.43 11.35 33.88 4.16
3363 3871 2.754552 GGTGCACATATGACATGGTGTT 59.245 45.455 20.43 0.59 33.88 3.32
3364 3872 3.193267 GGTGCACATATGACATGGTGTTT 59.807 43.478 20.43 0.00 33.88 2.83
3365 3873 4.168014 GTGCACATATGACATGGTGTTTG 58.832 43.478 13.17 0.00 33.88 2.93
3366 3874 3.193056 TGCACATATGACATGGTGTTTGG 59.807 43.478 10.38 5.92 33.88 3.28
3367 3875 3.193267 GCACATATGACATGGTGTTTGGT 59.807 43.478 10.38 0.00 33.88 3.67
3368 3876 4.321899 GCACATATGACATGGTGTTTGGTT 60.322 41.667 10.38 0.00 33.88 3.67
3369 3877 5.162794 CACATATGACATGGTGTTTGGTTG 58.837 41.667 10.38 0.00 0.00 3.77
3370 3878 2.818130 ATGACATGGTGTTTGGTTGC 57.182 45.000 0.00 0.00 0.00 4.17
3371 3879 1.478631 TGACATGGTGTTTGGTTGCA 58.521 45.000 0.00 0.00 0.00 4.08
3372 3880 1.827344 TGACATGGTGTTTGGTTGCAA 59.173 42.857 0.00 0.00 0.00 4.08
3373 3881 2.200899 GACATGGTGTTTGGTTGCAAC 58.799 47.619 21.59 21.59 0.00 4.17
3406 3914 6.026947 GTGTTGTCACCACTTCTATCTAGT 57.973 41.667 0.00 0.00 38.51 2.57
3407 3915 5.864474 GTGTTGTCACCACTTCTATCTAGTG 59.136 44.000 0.00 0.00 42.06 2.74
3415 3923 5.923733 CACTTCTATCTAGTGGTGACCTT 57.076 43.478 2.11 0.00 39.42 3.50
3417 3925 6.797454 CACTTCTATCTAGTGGTGACCTTAC 58.203 44.000 2.11 0.00 39.42 2.34
3418 3926 5.892686 ACTTCTATCTAGTGGTGACCTTACC 59.107 44.000 2.11 0.00 41.24 2.85
3425 3933 1.205055 TGGTGACCTTACCACACACA 58.795 50.000 2.11 0.00 45.46 3.72
3426 3934 1.560146 TGGTGACCTTACCACACACAA 59.440 47.619 2.11 0.00 45.46 3.33
3427 3935 2.173782 TGGTGACCTTACCACACACAAT 59.826 45.455 2.11 0.00 45.46 2.71
3428 3936 2.812011 GGTGACCTTACCACACACAATC 59.188 50.000 0.00 0.00 40.54 2.67
3429 3937 3.496160 GGTGACCTTACCACACACAATCT 60.496 47.826 0.00 0.00 40.54 2.40
3430 3938 3.498397 GTGACCTTACCACACACAATCTG 59.502 47.826 0.00 0.00 34.81 2.90
3431 3939 3.389656 TGACCTTACCACACACAATCTGA 59.610 43.478 0.00 0.00 0.00 3.27
3432 3940 4.141597 TGACCTTACCACACACAATCTGAA 60.142 41.667 0.00 0.00 0.00 3.02
3433 3941 4.134563 ACCTTACCACACACAATCTGAAC 58.865 43.478 0.00 0.00 0.00 3.18
3434 3942 4.133820 CCTTACCACACACAATCTGAACA 58.866 43.478 0.00 0.00 0.00 3.18
3435 3943 4.024048 CCTTACCACACACAATCTGAACAC 60.024 45.833 0.00 0.00 0.00 3.32
3436 3944 2.997980 ACCACACACAATCTGAACACA 58.002 42.857 0.00 0.00 0.00 3.72
3437 3945 2.945008 ACCACACACAATCTGAACACAG 59.055 45.455 0.00 0.00 0.00 3.66
3438 3946 2.945008 CCACACACAATCTGAACACAGT 59.055 45.455 0.00 0.00 33.82 3.55
3439 3947 3.242837 CCACACACAATCTGAACACAGTG 60.243 47.826 0.00 0.00 33.82 3.66
3440 3948 2.355756 ACACACAATCTGAACACAGTGC 59.644 45.455 0.00 0.00 33.82 4.40
3441 3949 1.949525 ACACAATCTGAACACAGTGCC 59.050 47.619 0.00 0.00 33.82 5.01
3442 3950 1.948834 CACAATCTGAACACAGTGCCA 59.051 47.619 0.00 0.00 33.82 4.92
3443 3951 2.031420 CACAATCTGAACACAGTGCCAG 60.031 50.000 14.40 14.40 33.82 4.85
3444 3952 1.068748 CAATCTGAACACAGTGCCAGC 60.069 52.381 15.33 0.00 33.82 4.85
3445 3953 0.399454 ATCTGAACACAGTGCCAGCT 59.601 50.000 15.33 6.43 33.82 4.24
3446 3954 1.047801 TCTGAACACAGTGCCAGCTA 58.952 50.000 15.33 1.38 33.82 3.32
3447 3955 1.001293 TCTGAACACAGTGCCAGCTAG 59.999 52.381 15.33 0.00 33.82 3.42
3448 3956 0.758734 TGAACACAGTGCCAGCTAGT 59.241 50.000 0.00 0.00 0.00 2.57
3449 3957 1.140852 TGAACACAGTGCCAGCTAGTT 59.859 47.619 0.00 0.00 0.00 2.24
3450 3958 2.367241 TGAACACAGTGCCAGCTAGTTA 59.633 45.455 0.00 0.00 0.00 2.24
3451 3959 3.181459 TGAACACAGTGCCAGCTAGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
3452 3960 3.485463 ACACAGTGCCAGCTAGTTAAA 57.515 42.857 0.00 0.00 0.00 1.52
3453 3961 3.139077 ACACAGTGCCAGCTAGTTAAAC 58.861 45.455 0.00 0.00 0.00 2.01
3454 3962 3.138304 CACAGTGCCAGCTAGTTAAACA 58.862 45.455 0.00 0.00 0.00 2.83
3455 3963 3.563808 CACAGTGCCAGCTAGTTAAACAA 59.436 43.478 0.00 0.00 0.00 2.83
3456 3964 4.036262 CACAGTGCCAGCTAGTTAAACAAA 59.964 41.667 0.00 0.00 0.00 2.83
3457 3965 4.827284 ACAGTGCCAGCTAGTTAAACAAAT 59.173 37.500 0.00 0.00 0.00 2.32
3458 3966 5.156355 CAGTGCCAGCTAGTTAAACAAATG 58.844 41.667 0.00 0.00 0.00 2.32
3459 3967 5.048782 CAGTGCCAGCTAGTTAAACAAATGA 60.049 40.000 0.00 0.00 0.00 2.57
3460 3968 5.048713 AGTGCCAGCTAGTTAAACAAATGAC 60.049 40.000 0.00 0.00 0.00 3.06
3461 3969 4.824537 TGCCAGCTAGTTAAACAAATGACA 59.175 37.500 0.00 0.00 0.00 3.58
3462 3970 5.048782 TGCCAGCTAGTTAAACAAATGACAG 60.049 40.000 0.00 0.00 0.00 3.51
3463 3971 5.048713 GCCAGCTAGTTAAACAAATGACAGT 60.049 40.000 0.00 0.00 0.00 3.55
3464 3972 6.515035 GCCAGCTAGTTAAACAAATGACAGTT 60.515 38.462 0.00 0.00 0.00 3.16
3465 3973 7.078228 CCAGCTAGTTAAACAAATGACAGTTC 58.922 38.462 0.00 0.00 0.00 3.01
3466 3974 7.255104 CCAGCTAGTTAAACAAATGACAGTTCA 60.255 37.037 0.00 0.00 35.73 3.18
3467 3975 8.292448 CAGCTAGTTAAACAAATGACAGTTCAT 58.708 33.333 0.00 0.00 44.98 2.57
3468 3976 8.507249 AGCTAGTTAAACAAATGACAGTTCATC 58.493 33.333 0.00 0.00 42.00 2.92
3469 3977 7.750903 GCTAGTTAAACAAATGACAGTTCATCC 59.249 37.037 0.00 0.00 42.00 3.51
3470 3978 7.823745 AGTTAAACAAATGACAGTTCATCCT 57.176 32.000 0.00 0.00 42.00 3.24
3471 3979 8.918202 AGTTAAACAAATGACAGTTCATCCTA 57.082 30.769 0.00 0.00 42.00 2.94
3472 3980 9.349713 AGTTAAACAAATGACAGTTCATCCTAA 57.650 29.630 0.00 0.00 42.00 2.69
3473 3981 9.394477 GTTAAACAAATGACAGTTCATCCTAAC 57.606 33.333 0.00 0.00 42.00 2.34
3474 3982 7.823745 AAACAAATGACAGTTCATCCTAACT 57.176 32.000 0.00 0.00 42.00 2.24
3475 3983 8.918202 AAACAAATGACAGTTCATCCTAACTA 57.082 30.769 0.00 0.00 42.00 2.24
3476 3984 7.907214 ACAAATGACAGTTCATCCTAACTAC 57.093 36.000 0.00 0.00 42.00 2.73
3477 3985 7.450074 ACAAATGACAGTTCATCCTAACTACA 58.550 34.615 0.00 0.00 42.00 2.74
3478 3986 7.936847 ACAAATGACAGTTCATCCTAACTACAA 59.063 33.333 0.00 0.00 42.00 2.41
3479 3987 8.950210 CAAATGACAGTTCATCCTAACTACAAT 58.050 33.333 0.00 0.00 42.00 2.71
3480 3988 8.723942 AATGACAGTTCATCCTAACTACAATC 57.276 34.615 0.00 0.00 42.00 2.67
3481 3989 7.239763 TGACAGTTCATCCTAACTACAATCA 57.760 36.000 0.00 0.00 37.61 2.57
3482 3990 7.676004 TGACAGTTCATCCTAACTACAATCAA 58.324 34.615 0.00 0.00 37.61 2.57
3483 3991 8.154203 TGACAGTTCATCCTAACTACAATCAAA 58.846 33.333 0.00 0.00 37.61 2.69
3484 3992 9.167311 GACAGTTCATCCTAACTACAATCAAAT 57.833 33.333 0.00 0.00 37.61 2.32
3485 3993 8.950210 ACAGTTCATCCTAACTACAATCAAATG 58.050 33.333 0.00 0.00 37.61 2.32
3486 3994 9.166173 CAGTTCATCCTAACTACAATCAAATGA 57.834 33.333 0.00 0.00 37.61 2.57
3487 3995 9.167311 AGTTCATCCTAACTACAATCAAATGAC 57.833 33.333 0.00 0.00 37.93 3.06
3488 3996 8.946085 GTTCATCCTAACTACAATCAAATGACA 58.054 33.333 0.00 0.00 0.00 3.58
3489 3997 8.722480 TCATCCTAACTACAATCAAATGACAG 57.278 34.615 0.00 0.00 0.00 3.51
3490 3998 8.539544 TCATCCTAACTACAATCAAATGACAGA 58.460 33.333 0.00 0.00 0.00 3.41
3491 3999 9.334947 CATCCTAACTACAATCAAATGACAGAT 57.665 33.333 0.00 0.00 0.00 2.90
3492 4000 8.948631 TCCTAACTACAATCAAATGACAGATC 57.051 34.615 0.00 0.00 0.00 2.75
3493 4001 8.539544 TCCTAACTACAATCAAATGACAGATCA 58.460 33.333 0.00 0.00 39.83 2.92
3494 4002 9.166173 CCTAACTACAATCAAATGACAGATCAA 57.834 33.333 0.00 0.00 38.69 2.57
3508 4016 8.985315 ATGACAGATCAAATTATTAAGAGCCA 57.015 30.769 0.00 0.00 38.69 4.75
3509 4017 8.985315 TGACAGATCAAATTATTAAGAGCCAT 57.015 30.769 0.00 0.00 0.00 4.40
3510 4018 9.412460 TGACAGATCAAATTATTAAGAGCCATT 57.588 29.630 0.00 0.00 0.00 3.16
3511 4019 9.674824 GACAGATCAAATTATTAAGAGCCATTG 57.325 33.333 0.00 0.00 0.00 2.82
3512 4020 8.636213 ACAGATCAAATTATTAAGAGCCATTGG 58.364 33.333 0.00 0.00 0.00 3.16
3524 4032 2.675658 GCCATTGGCTAAATAGGGGA 57.324 50.000 20.66 0.00 46.69 4.81
3525 4033 3.175438 GCCATTGGCTAAATAGGGGAT 57.825 47.619 20.66 0.00 46.69 3.85
3526 4034 4.316025 GCCATTGGCTAAATAGGGGATA 57.684 45.455 20.66 0.00 46.69 2.59
3527 4035 4.273318 GCCATTGGCTAAATAGGGGATAG 58.727 47.826 20.66 0.00 46.69 2.08
3528 4036 4.263949 GCCATTGGCTAAATAGGGGATAGT 60.264 45.833 20.66 0.00 46.69 2.12
3529 4037 5.752030 GCCATTGGCTAAATAGGGGATAGTT 60.752 44.000 20.66 0.00 46.69 2.24
3530 4038 5.946377 CCATTGGCTAAATAGGGGATAGTTC 59.054 44.000 0.00 0.00 0.00 3.01
3531 4039 6.467194 CCATTGGCTAAATAGGGGATAGTTCA 60.467 42.308 0.00 0.00 0.00 3.18
3532 4040 6.780198 TTGGCTAAATAGGGGATAGTTCAT 57.220 37.500 0.00 0.00 0.00 2.57
3533 4041 6.374417 TGGCTAAATAGGGGATAGTTCATC 57.626 41.667 0.00 0.00 0.00 2.92
3534 4042 5.046591 TGGCTAAATAGGGGATAGTTCATCG 60.047 44.000 0.00 0.00 34.12 3.84
3535 4043 5.420409 GCTAAATAGGGGATAGTTCATCGG 58.580 45.833 0.00 0.00 34.12 4.18
3536 4044 5.046520 GCTAAATAGGGGATAGTTCATCGGT 60.047 44.000 0.00 0.00 34.12 4.69
3537 4045 4.891992 AATAGGGGATAGTTCATCGGTG 57.108 45.455 0.00 0.00 34.12 4.94
3538 4046 2.176247 AGGGGATAGTTCATCGGTGT 57.824 50.000 0.00 0.00 34.12 4.16
3539 4047 2.478292 AGGGGATAGTTCATCGGTGTT 58.522 47.619 0.00 0.00 34.12 3.32
3540 4048 2.170607 AGGGGATAGTTCATCGGTGTTG 59.829 50.000 0.00 0.00 34.12 3.33
3541 4049 1.940613 GGGATAGTTCATCGGTGTTGC 59.059 52.381 0.00 0.00 34.12 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.550437 AGGACATACAAGTCATCAGCC 57.450 47.619 0.00 0.00 40.29 4.85
116 117 6.183360 GCTCACATCAAATAAGGTCAATTCGA 60.183 38.462 0.00 0.00 0.00 3.71
142 143 5.499139 TTGTCTTCTGTTTAAGCCTTGTG 57.501 39.130 0.00 0.00 0.00 3.33
143 144 5.067805 CCTTTGTCTTCTGTTTAAGCCTTGT 59.932 40.000 0.00 0.00 0.00 3.16
183 184 6.374578 GCACCTTTGTCTTCTGTTTAGAATC 58.625 40.000 0.00 0.00 41.83 2.52
279 280 7.849026 CCATAATATAAGACCGTTTTTGACACG 59.151 37.037 0.00 0.00 37.39 4.49
280 281 8.126700 CCCATAATATAAGACCGTTTTTGACAC 58.873 37.037 0.00 0.00 0.00 3.67
284 285 8.215926 TGTCCCATAATATAAGACCGTTTTTG 57.784 34.615 0.00 0.00 0.00 2.44
306 307 5.415221 CACTTCATTTCTACTCCCTCTGTC 58.585 45.833 0.00 0.00 0.00 3.51
361 362 8.768501 ACATACAAAGATAGTCCAGTCTCATA 57.231 34.615 0.00 0.00 0.00 2.15
513 514 5.129634 TGGTTGATGCTGAACTTAAGTTGA 58.870 37.500 25.17 16.19 38.56 3.18
593 594 5.895636 CCAACAAAGGCAGATACATGTTA 57.104 39.130 2.30 0.00 30.48 2.41
738 962 3.439476 CAGCTTTCTAAATCAGCAGCACT 59.561 43.478 0.00 0.00 35.88 4.40
756 980 2.902705 TCTTTTGTACACGACCAGCT 57.097 45.000 0.00 0.00 0.00 4.24
779 1003 0.382636 GCGCGGTACATATTCAACGC 60.383 55.000 8.83 5.80 43.15 4.84
798 1022 1.361668 CGGCGGGTCAGTCATTTGAG 61.362 60.000 0.00 0.00 0.00 3.02
805 1029 4.778143 AATGGCGGCGGGTCAGTC 62.778 66.667 9.78 0.00 30.81 3.51
844 1068 2.676121 TTGCCACCCTTCGCCATG 60.676 61.111 0.00 0.00 0.00 3.66
856 1087 4.980805 GGCGTCCGTGAGTTGCCA 62.981 66.667 0.00 0.00 45.06 4.92
895 1126 2.032550 GTCATGCGTGCTGCTTATGATT 59.967 45.455 0.00 0.00 46.63 2.57
1109 1355 2.669229 TGTACTCGTCGGCGTGGA 60.669 61.111 16.40 3.95 39.49 4.02
1319 1565 2.039624 TGAGGAGGGAGGTCCAGC 59.960 66.667 0.00 0.00 39.34 4.85
1376 1622 2.227089 GACCATGTCGCGGAAGACCT 62.227 60.000 6.13 0.00 40.26 3.85
2007 2253 4.131088 GTCGGGTCGAGCCTCCAC 62.131 72.222 29.53 19.20 36.23 4.02
2228 2474 1.169661 CCTCTCCGTCATCTCCTCCG 61.170 65.000 0.00 0.00 0.00 4.63
2559 2805 0.458543 TCGACTTGAAGCTCATCGGC 60.459 55.000 3.62 0.00 31.81 5.54
2565 2811 1.925847 CTCATGCTCGACTTGAAGCTC 59.074 52.381 0.00 0.00 32.50 4.09
2655 3154 1.234821 GTGTATGTGGTGTGGTGTGG 58.765 55.000 0.00 0.00 0.00 4.17
2660 3159 3.608796 TCATGATGTGTATGTGGTGTGG 58.391 45.455 0.00 0.00 0.00 4.17
2661 3160 4.877251 TCATCATGATGTGTATGTGGTGTG 59.123 41.667 30.01 6.25 39.72 3.82
2662 3161 5.101648 TCATCATGATGTGTATGTGGTGT 57.898 39.130 30.01 0.00 39.72 4.16
2663 3162 5.587443 AGTTCATCATGATGTGTATGTGGTG 59.413 40.000 30.01 6.86 39.72 4.17
2664 3163 5.748402 AGTTCATCATGATGTGTATGTGGT 58.252 37.500 30.01 7.80 39.72 4.16
2665 3164 7.519488 GCTTAGTTCATCATGATGTGTATGTGG 60.519 40.741 30.01 17.06 39.72 4.17
2666 3165 7.011669 TGCTTAGTTCATCATGATGTGTATGTG 59.988 37.037 30.01 18.18 39.72 3.21
2667 3166 7.049754 TGCTTAGTTCATCATGATGTGTATGT 58.950 34.615 30.01 15.11 39.72 2.29
2668 3167 7.486802 TGCTTAGTTCATCATGATGTGTATG 57.513 36.000 30.01 21.18 39.72 2.39
2669 3168 7.935210 TCATGCTTAGTTCATCATGATGTGTAT 59.065 33.333 30.01 18.62 39.98 2.29
2677 3179 7.642978 GCTAAGTTTCATGCTTAGTTCATCATG 59.357 37.037 15.65 0.00 44.24 3.07
2734 3237 2.486918 ACGTTTTTAACACCGAGGGAG 58.513 47.619 0.00 0.00 0.00 4.30
2735 3238 2.618442 ACGTTTTTAACACCGAGGGA 57.382 45.000 0.00 0.00 0.00 4.20
2736 3239 2.874086 AGAACGTTTTTAACACCGAGGG 59.126 45.455 0.46 0.00 0.00 4.30
2737 3240 4.541085 AAGAACGTTTTTAACACCGAGG 57.459 40.909 0.46 0.00 0.00 4.63
2738 3241 9.815936 AAATATAAGAACGTTTTTAACACCGAG 57.184 29.630 14.41 0.00 0.00 4.63
2749 3252 9.379791 CCTCTGTCCTAAAATATAAGAACGTTT 57.620 33.333 0.46 0.00 0.00 3.60
2751 3254 7.343833 TCCCTCTGTCCTAAAATATAAGAACGT 59.656 37.037 0.00 0.00 0.00 3.99
2755 3258 9.589461 CTACTCCCTCTGTCCTAAAATATAAGA 57.411 37.037 0.00 0.00 0.00 2.10
2756 3259 9.369672 ACTACTCCCTCTGTCCTAAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
2767 3270 8.852135 GCAATATATATACTACTCCCTCTGTCC 58.148 40.741 0.00 0.00 0.00 4.02
2769 3272 9.944079 ATGCAATATATATACTACTCCCTCTGT 57.056 33.333 0.00 0.00 0.00 3.41
2771 3274 8.865090 GCATGCAATATATATACTACTCCCTCT 58.135 37.037 14.21 0.00 0.00 3.69
2772 3275 8.642432 TGCATGCAATATATATACTACTCCCTC 58.358 37.037 20.30 0.00 0.00 4.30
2775 3278 9.770097 ACATGCATGCAATATATATACTACTCC 57.230 33.333 26.68 0.00 0.00 3.85
2779 3282 9.889128 ACACACATGCATGCAATATATATACTA 57.111 29.630 26.68 0.00 0.00 1.82
2780 3283 8.797350 ACACACATGCATGCAATATATATACT 57.203 30.769 26.68 0.00 0.00 2.12
2783 3286 8.843262 GGATACACACATGCATGCAATATATAT 58.157 33.333 26.68 17.18 0.00 0.86
2784 3287 8.048514 AGGATACACACATGCATGCAATATATA 58.951 33.333 26.68 13.24 41.41 0.86
2785 3288 6.888088 AGGATACACACATGCATGCAATATAT 59.112 34.615 26.68 16.59 41.41 0.86
2786 3289 6.240145 AGGATACACACATGCATGCAATATA 58.760 36.000 26.68 12.76 41.41 0.86
2787 3290 5.074804 AGGATACACACATGCATGCAATAT 58.925 37.500 26.68 17.56 41.41 1.28
2788 3291 4.463070 AGGATACACACATGCATGCAATA 58.537 39.130 26.68 13.78 41.41 1.90
2789 3292 3.293337 AGGATACACACATGCATGCAAT 58.707 40.909 26.68 13.56 41.41 3.56
2790 3293 2.684374 GAGGATACACACATGCATGCAA 59.316 45.455 26.68 6.44 41.41 4.08
2791 3294 2.291365 GAGGATACACACATGCATGCA 58.709 47.619 26.53 25.04 41.41 3.96
2792 3295 1.605710 GGAGGATACACACATGCATGC 59.394 52.381 26.53 11.82 41.41 4.06
2793 3296 2.921821 TGGAGGATACACACATGCATG 58.078 47.619 25.09 25.09 41.41 4.06
2802 3305 2.435805 TGCAAGAGGATGGAGGATACAC 59.564 50.000 0.00 0.00 41.41 2.90
2870 3373 4.742167 GTCTTGATCATGATCGGTACTGTG 59.258 45.833 26.52 12.29 40.63 3.66
3016 3519 4.278419 CCAAAAGAAATTCGTTGGGAGAGT 59.722 41.667 18.05 0.00 31.57 3.24
3119 3622 2.159819 ATATAGCGGCTGCACGAGGG 62.160 60.000 21.93 0.00 46.23 4.30
3125 3628 0.666274 GCACGTATATAGCGGCTGCA 60.666 55.000 21.93 6.18 46.23 4.41
3165 3673 2.345876 GCAATGTAACCAAACATGCCC 58.654 47.619 0.00 0.00 39.98 5.36
3166 3674 2.345876 GGCAATGTAACCAAACATGCC 58.654 47.619 11.75 11.75 41.90 4.40
3167 3675 1.991965 CGGCAATGTAACCAAACATGC 59.008 47.619 0.00 0.00 39.98 4.06
3168 3676 3.567576 TCGGCAATGTAACCAAACATG 57.432 42.857 0.00 0.00 39.98 3.21
3169 3677 4.219507 TGAATCGGCAATGTAACCAAACAT 59.780 37.500 0.00 0.00 41.87 2.71
3170 3678 3.570125 TGAATCGGCAATGTAACCAAACA 59.430 39.130 0.00 0.00 0.00 2.83
3171 3679 4.165779 CTGAATCGGCAATGTAACCAAAC 58.834 43.478 0.00 0.00 0.00 2.93
3172 3680 3.366883 GCTGAATCGGCAATGTAACCAAA 60.367 43.478 9.52 0.00 35.55 3.28
3173 3681 2.163412 GCTGAATCGGCAATGTAACCAA 59.837 45.455 9.52 0.00 35.55 3.67
3174 3682 1.742831 GCTGAATCGGCAATGTAACCA 59.257 47.619 9.52 0.00 35.55 3.67
3175 3683 1.065551 GGCTGAATCGGCAATGTAACC 59.934 52.381 16.63 0.00 37.51 2.85
3176 3684 2.017049 AGGCTGAATCGGCAATGTAAC 58.983 47.619 16.63 0.00 37.51 2.50
3177 3685 2.016318 CAGGCTGAATCGGCAATGTAA 58.984 47.619 16.63 0.00 37.51 2.41
3178 3686 1.209261 TCAGGCTGAATCGGCAATGTA 59.791 47.619 16.28 2.32 37.51 2.29
3179 3687 0.035152 TCAGGCTGAATCGGCAATGT 60.035 50.000 16.28 0.00 37.51 2.71
3180 3688 0.379669 GTCAGGCTGAATCGGCAATG 59.620 55.000 20.62 13.45 37.51 2.82
3181 3689 0.749454 GGTCAGGCTGAATCGGCAAT 60.749 55.000 20.62 0.47 37.51 3.56
3182 3690 1.377202 GGTCAGGCTGAATCGGCAA 60.377 57.895 20.62 0.00 37.51 4.52
3183 3691 2.268920 GGTCAGGCTGAATCGGCA 59.731 61.111 20.62 0.00 37.51 5.69
3184 3692 2.514824 GGGTCAGGCTGAATCGGC 60.515 66.667 20.62 5.30 34.56 5.54
3185 3693 2.202932 CGGGTCAGGCTGAATCGG 60.203 66.667 20.62 14.38 0.00 4.18
3186 3694 2.202932 CCGGGTCAGGCTGAATCG 60.203 66.667 20.62 23.16 0.00 3.34
3194 3702 4.135153 CAGACTCGCCGGGTCAGG 62.135 72.222 20.74 7.17 36.29 3.86
3195 3703 4.135153 CCAGACTCGCCGGGTCAG 62.135 72.222 20.74 11.62 36.29 3.51
3199 3707 2.311688 ATAAAGCCAGACTCGCCGGG 62.312 60.000 2.18 0.00 0.00 5.73
3200 3708 0.462047 AATAAAGCCAGACTCGCCGG 60.462 55.000 0.00 0.00 0.00 6.13
3201 3709 0.652592 CAATAAAGCCAGACTCGCCG 59.347 55.000 0.00 0.00 0.00 6.46
3202 3710 1.936547 CTCAATAAAGCCAGACTCGCC 59.063 52.381 0.00 0.00 0.00 5.54
3203 3711 1.328986 GCTCAATAAAGCCAGACTCGC 59.671 52.381 0.00 0.00 36.22 5.03
3212 3720 2.159379 CCTCAAACCGGCTCAATAAAGC 60.159 50.000 0.00 0.00 41.73 3.51
3213 3721 2.423538 CCCTCAAACCGGCTCAATAAAG 59.576 50.000 0.00 0.00 0.00 1.85
3214 3722 2.442413 CCCTCAAACCGGCTCAATAAA 58.558 47.619 0.00 0.00 0.00 1.40
3215 3723 1.340600 CCCCTCAAACCGGCTCAATAA 60.341 52.381 0.00 0.00 0.00 1.40
3216 3724 0.254747 CCCCTCAAACCGGCTCAATA 59.745 55.000 0.00 0.00 0.00 1.90
3217 3725 1.000896 CCCCTCAAACCGGCTCAAT 60.001 57.895 0.00 0.00 0.00 2.57
3218 3726 1.497309 ATCCCCTCAAACCGGCTCAA 61.497 55.000 0.00 0.00 0.00 3.02
3219 3727 1.923395 ATCCCCTCAAACCGGCTCA 60.923 57.895 0.00 0.00 0.00 4.26
3220 3728 1.452108 CATCCCCTCAAACCGGCTC 60.452 63.158 0.00 0.00 0.00 4.70
3221 3729 2.677228 CATCCCCTCAAACCGGCT 59.323 61.111 0.00 0.00 0.00 5.52
3222 3730 3.140814 GCATCCCCTCAAACCGGC 61.141 66.667 0.00 0.00 0.00 6.13
3223 3731 1.750399 CTGCATCCCCTCAAACCGG 60.750 63.158 0.00 0.00 0.00 5.28
3224 3732 1.750399 CCTGCATCCCCTCAAACCG 60.750 63.158 0.00 0.00 0.00 4.44
3225 3733 2.054453 GCCTGCATCCCCTCAAACC 61.054 63.158 0.00 0.00 0.00 3.27
3226 3734 2.054453 GGCCTGCATCCCCTCAAAC 61.054 63.158 0.00 0.00 0.00 2.93
3227 3735 2.091640 TTGGCCTGCATCCCCTCAAA 62.092 55.000 3.32 0.00 0.00 2.69
3228 3736 2.091640 TTTGGCCTGCATCCCCTCAA 62.092 55.000 3.32 0.00 0.00 3.02
3229 3737 2.091640 TTTTGGCCTGCATCCCCTCA 62.092 55.000 3.32 0.00 0.00 3.86
3230 3738 0.904394 TTTTTGGCCTGCATCCCCTC 60.904 55.000 3.32 0.00 0.00 4.30
3231 3739 1.158227 TTTTTGGCCTGCATCCCCT 59.842 52.632 3.32 0.00 0.00 4.79
3232 3740 3.804490 TTTTTGGCCTGCATCCCC 58.196 55.556 3.32 0.00 0.00 4.81
3246 3754 6.449698 CAAACTATGTGCATCTGGAGTTTTT 58.550 36.000 10.57 0.00 35.51 1.94
3247 3755 5.047802 CCAAACTATGTGCATCTGGAGTTTT 60.048 40.000 10.57 0.00 35.51 2.43
3248 3756 4.460382 CCAAACTATGTGCATCTGGAGTTT 59.540 41.667 0.00 0.00 37.55 2.66
3249 3757 4.012374 CCAAACTATGTGCATCTGGAGTT 58.988 43.478 0.00 0.00 0.00 3.01
3250 3758 3.009473 ACCAAACTATGTGCATCTGGAGT 59.991 43.478 0.00 0.00 0.00 3.85
3251 3759 3.614092 ACCAAACTATGTGCATCTGGAG 58.386 45.455 0.00 0.00 0.00 3.86
3252 3760 3.719268 ACCAAACTATGTGCATCTGGA 57.281 42.857 0.00 0.00 0.00 3.86
3253 3761 3.674138 GCAACCAAACTATGTGCATCTGG 60.674 47.826 0.00 0.00 32.71 3.86
3254 3762 3.504863 GCAACCAAACTATGTGCATCTG 58.495 45.455 0.00 0.00 32.71 2.90
3255 3763 2.493278 GGCAACCAAACTATGTGCATCT 59.507 45.455 0.00 0.00 33.79 2.90
3256 3764 2.493278 AGGCAACCAAACTATGTGCATC 59.507 45.455 0.00 0.00 33.79 3.91
3257 3765 2.231964 CAGGCAACCAAACTATGTGCAT 59.768 45.455 0.00 0.00 33.79 3.96
3258 3766 1.612950 CAGGCAACCAAACTATGTGCA 59.387 47.619 0.00 0.00 33.79 4.57
3259 3767 1.669795 GCAGGCAACCAAACTATGTGC 60.670 52.381 0.00 0.00 31.91 4.57
3260 3768 1.612950 TGCAGGCAACCAAACTATGTG 59.387 47.619 0.00 0.00 37.17 3.21
3261 3769 1.993956 TGCAGGCAACCAAACTATGT 58.006 45.000 0.00 0.00 37.17 2.29
3262 3770 2.883574 CATGCAGGCAACCAAACTATG 58.116 47.619 0.00 0.00 37.17 2.23
3263 3771 1.205417 GCATGCAGGCAACCAAACTAT 59.795 47.619 20.11 0.00 37.17 2.12
3264 3772 0.602562 GCATGCAGGCAACCAAACTA 59.397 50.000 20.11 0.00 37.17 2.24
3265 3773 1.117142 AGCATGCAGGCAACCAAACT 61.117 50.000 26.87 0.00 35.83 2.66
3266 3774 0.668401 GAGCATGCAGGCAACCAAAC 60.668 55.000 26.87 3.85 35.83 2.93
3267 3775 1.667151 GAGCATGCAGGCAACCAAA 59.333 52.632 26.87 0.00 35.83 3.28
3268 3776 2.277591 GGAGCATGCAGGCAACCAA 61.278 57.895 26.87 0.00 35.83 3.67
3269 3777 1.851065 TAGGAGCATGCAGGCAACCA 61.851 55.000 30.13 18.61 35.81 3.67
3270 3778 1.077501 TAGGAGCATGCAGGCAACC 60.078 57.895 26.87 25.55 35.83 3.77
3271 3779 0.393537 ACTAGGAGCATGCAGGCAAC 60.394 55.000 26.87 17.24 35.83 4.17
3272 3780 0.329261 AACTAGGAGCATGCAGGCAA 59.671 50.000 26.87 6.82 35.83 4.52
3273 3781 0.393402 CAACTAGGAGCATGCAGGCA 60.393 55.000 26.87 3.16 35.83 4.75
3274 3782 1.722636 GCAACTAGGAGCATGCAGGC 61.723 60.000 21.98 17.09 38.63 4.85
3275 3783 0.393402 TGCAACTAGGAGCATGCAGG 60.393 55.000 21.98 7.12 43.32 4.85
3276 3784 3.164026 TGCAACTAGGAGCATGCAG 57.836 52.632 21.98 10.97 43.32 4.41
3281 3789 1.901833 TGTCTCATGCAACTAGGAGCA 59.098 47.619 12.82 12.82 45.92 4.26
3282 3790 2.680312 TGTCTCATGCAACTAGGAGC 57.320 50.000 0.00 0.00 0.00 4.70
3283 3791 4.318332 TGTTTGTCTCATGCAACTAGGAG 58.682 43.478 0.00 0.00 0.00 3.69
3284 3792 4.350368 TGTTTGTCTCATGCAACTAGGA 57.650 40.909 0.00 0.00 0.00 2.94
3285 3793 5.633830 AATGTTTGTCTCATGCAACTAGG 57.366 39.130 0.00 0.00 0.00 3.02
3286 3794 7.648908 TCAAAAATGTTTGTCTCATGCAACTAG 59.351 33.333 8.22 0.00 43.90 2.57
3287 3795 7.487484 TCAAAAATGTTTGTCTCATGCAACTA 58.513 30.769 8.22 0.00 43.90 2.24
3288 3796 6.339730 TCAAAAATGTTTGTCTCATGCAACT 58.660 32.000 8.22 0.00 43.90 3.16
3289 3797 6.586868 TCAAAAATGTTTGTCTCATGCAAC 57.413 33.333 8.22 0.00 43.90 4.17
3290 3798 6.424509 GGATCAAAAATGTTTGTCTCATGCAA 59.575 34.615 8.22 0.00 43.90 4.08
3291 3799 5.927689 GGATCAAAAATGTTTGTCTCATGCA 59.072 36.000 8.22 0.00 43.90 3.96
3292 3800 5.927689 TGGATCAAAAATGTTTGTCTCATGC 59.072 36.000 8.22 1.04 43.90 4.06
3293 3801 6.090358 GCTGGATCAAAAATGTTTGTCTCATG 59.910 38.462 8.22 5.12 43.90 3.07
3294 3802 6.161381 GCTGGATCAAAAATGTTTGTCTCAT 58.839 36.000 8.22 0.00 43.90 2.90
3295 3803 5.068855 TGCTGGATCAAAAATGTTTGTCTCA 59.931 36.000 8.22 4.68 43.90 3.27
3296 3804 5.531634 TGCTGGATCAAAAATGTTTGTCTC 58.468 37.500 8.22 6.68 43.90 3.36
3297 3805 5.534207 TGCTGGATCAAAAATGTTTGTCT 57.466 34.783 8.22 0.00 43.90 3.41
3298 3806 6.790285 AATGCTGGATCAAAAATGTTTGTC 57.210 33.333 8.22 5.55 43.90 3.18
3299 3807 6.961576 CAAATGCTGGATCAAAAATGTTTGT 58.038 32.000 8.22 0.00 43.90 2.83
3324 3832 0.528249 CCTAATGCAATGCGGGCAAC 60.528 55.000 0.00 0.00 45.60 4.17
3325 3833 0.969917 ACCTAATGCAATGCGGGCAA 60.970 50.000 0.00 0.00 45.60 4.52
3326 3834 1.379710 ACCTAATGCAATGCGGGCA 60.380 52.632 0.00 0.00 46.66 5.36
3327 3835 1.066257 CACCTAATGCAATGCGGGC 59.934 57.895 0.00 0.00 0.00 6.13
3337 3845 4.823442 ACCATGTCATATGTGCACCTAATG 59.177 41.667 15.69 14.62 0.00 1.90
3338 3846 4.823442 CACCATGTCATATGTGCACCTAAT 59.177 41.667 15.69 3.67 0.00 1.73
3339 3847 4.198530 CACCATGTCATATGTGCACCTAA 58.801 43.478 15.69 0.00 0.00 2.69
3340 3848 3.199727 ACACCATGTCATATGTGCACCTA 59.800 43.478 15.69 9.61 0.00 3.08
3341 3849 2.025981 ACACCATGTCATATGTGCACCT 60.026 45.455 15.69 7.20 0.00 4.00
3342 3850 2.368439 ACACCATGTCATATGTGCACC 58.632 47.619 15.69 0.00 0.00 5.01
3343 3851 4.168014 CAAACACCATGTCATATGTGCAC 58.832 43.478 10.75 10.75 0.00 4.57
3344 3852 3.193056 CCAAACACCATGTCATATGTGCA 59.807 43.478 12.36 4.05 0.00 4.57
3345 3853 3.193267 ACCAAACACCATGTCATATGTGC 59.807 43.478 12.36 0.00 0.00 4.57
3346 3854 5.162794 CAACCAAACACCATGTCATATGTG 58.837 41.667 1.90 11.31 0.00 3.21
3347 3855 4.321899 GCAACCAAACACCATGTCATATGT 60.322 41.667 1.90 0.00 0.00 2.29
3348 3856 4.175516 GCAACCAAACACCATGTCATATG 58.824 43.478 0.00 0.00 0.00 1.78
3349 3857 3.831333 TGCAACCAAACACCATGTCATAT 59.169 39.130 0.00 0.00 0.00 1.78
3350 3858 3.225940 TGCAACCAAACACCATGTCATA 58.774 40.909 0.00 0.00 0.00 2.15
3351 3859 2.037901 TGCAACCAAACACCATGTCAT 58.962 42.857 0.00 0.00 0.00 3.06
3352 3860 1.478631 TGCAACCAAACACCATGTCA 58.521 45.000 0.00 0.00 0.00 3.58
3353 3861 2.200899 GTTGCAACCAAACACCATGTC 58.799 47.619 19.15 0.00 31.68 3.06
3354 3862 2.307934 GTTGCAACCAAACACCATGT 57.692 45.000 19.15 0.00 31.68 3.21
3383 3891 5.864474 CACTAGATAGAAGTGGTGACAACAC 59.136 44.000 16.11 16.11 46.06 3.32
3384 3892 6.025749 CACTAGATAGAAGTGGTGACAACA 57.974 41.667 0.00 0.00 46.06 3.33
3393 3901 5.923733 AAGGTCACCACTAGATAGAAGTG 57.076 43.478 0.00 1.56 43.26 3.16
3394 3902 5.892686 GGTAAGGTCACCACTAGATAGAAGT 59.107 44.000 0.00 0.00 38.55 3.01
3395 3903 5.892119 TGGTAAGGTCACCACTAGATAGAAG 59.108 44.000 0.00 0.00 43.76 2.85
3396 3904 5.834460 TGGTAAGGTCACCACTAGATAGAA 58.166 41.667 0.00 0.00 43.76 2.10
3397 3905 5.461516 TGGTAAGGTCACCACTAGATAGA 57.538 43.478 0.00 0.00 43.76 1.98
3406 3914 1.205055 TGTGTGTGGTAAGGTCACCA 58.795 50.000 0.00 0.00 46.46 4.17
3407 3915 2.335316 TTGTGTGTGGTAAGGTCACC 57.665 50.000 0.00 0.00 39.20 4.02
3408 3916 3.498397 CAGATTGTGTGTGGTAAGGTCAC 59.502 47.826 0.00 0.00 35.82 3.67
3409 3917 3.389656 TCAGATTGTGTGTGGTAAGGTCA 59.610 43.478 0.00 0.00 0.00 4.02
3410 3918 4.002906 TCAGATTGTGTGTGGTAAGGTC 57.997 45.455 0.00 0.00 0.00 3.85
3411 3919 4.134563 GTTCAGATTGTGTGTGGTAAGGT 58.865 43.478 0.00 0.00 0.00 3.50
3412 3920 4.024048 GTGTTCAGATTGTGTGTGGTAAGG 60.024 45.833 0.00 0.00 0.00 2.69
3413 3921 4.574421 TGTGTTCAGATTGTGTGTGGTAAG 59.426 41.667 0.00 0.00 0.00 2.34
3414 3922 4.518249 TGTGTTCAGATTGTGTGTGGTAA 58.482 39.130 0.00 0.00 0.00 2.85
3415 3923 4.126437 CTGTGTTCAGATTGTGTGTGGTA 58.874 43.478 0.00 0.00 43.76 3.25
3416 3924 2.945008 CTGTGTTCAGATTGTGTGTGGT 59.055 45.455 0.00 0.00 43.76 4.16
3417 3925 2.945008 ACTGTGTTCAGATTGTGTGTGG 59.055 45.455 2.17 0.00 43.76 4.17
3418 3926 3.789791 GCACTGTGTTCAGATTGTGTGTG 60.790 47.826 9.86 0.00 43.76 3.82
3419 3927 2.355756 GCACTGTGTTCAGATTGTGTGT 59.644 45.455 9.86 0.00 43.76 3.72
3420 3928 2.287188 GGCACTGTGTTCAGATTGTGTG 60.287 50.000 9.86 0.00 43.76 3.82
3421 3929 1.949525 GGCACTGTGTTCAGATTGTGT 59.050 47.619 9.86 0.00 43.76 3.72
3422 3930 1.948834 TGGCACTGTGTTCAGATTGTG 59.051 47.619 9.86 0.00 43.76 3.33
3423 3931 2.224606 CTGGCACTGTGTTCAGATTGT 58.775 47.619 20.55 0.00 43.76 2.71
3424 3932 1.068748 GCTGGCACTGTGTTCAGATTG 60.069 52.381 25.74 9.94 43.76 2.67
3425 3933 1.202855 AGCTGGCACTGTGTTCAGATT 60.203 47.619 25.74 15.49 43.76 2.40
3426 3934 0.399454 AGCTGGCACTGTGTTCAGAT 59.601 50.000 25.74 20.54 43.76 2.90
3427 3935 1.001293 CTAGCTGGCACTGTGTTCAGA 59.999 52.381 25.74 12.56 43.76 3.27
3428 3936 1.270518 ACTAGCTGGCACTGTGTTCAG 60.271 52.381 20.73 20.73 46.18 3.02
3429 3937 0.758734 ACTAGCTGGCACTGTGTTCA 59.241 50.000 9.86 7.60 0.00 3.18
3430 3938 1.884235 AACTAGCTGGCACTGTGTTC 58.116 50.000 9.86 3.22 0.00 3.18
3431 3939 3.485463 TTAACTAGCTGGCACTGTGTT 57.515 42.857 9.86 0.23 0.00 3.32
3432 3940 3.139077 GTTTAACTAGCTGGCACTGTGT 58.861 45.455 9.86 0.00 0.00 3.72
3433 3941 3.138304 TGTTTAACTAGCTGGCACTGTG 58.862 45.455 2.76 2.76 0.00 3.66
3434 3942 3.485463 TGTTTAACTAGCTGGCACTGT 57.515 42.857 0.00 0.00 0.00 3.55
3435 3943 4.829064 TTTGTTTAACTAGCTGGCACTG 57.171 40.909 0.00 0.00 0.00 3.66
3436 3944 5.048713 GTCATTTGTTTAACTAGCTGGCACT 60.049 40.000 0.00 0.00 0.00 4.40
3437 3945 5.154222 GTCATTTGTTTAACTAGCTGGCAC 58.846 41.667 0.00 0.00 0.00 5.01
3438 3946 4.824537 TGTCATTTGTTTAACTAGCTGGCA 59.175 37.500 0.00 0.00 0.00 4.92
3439 3947 5.048713 ACTGTCATTTGTTTAACTAGCTGGC 60.049 40.000 0.00 0.00 0.00 4.85
3440 3948 6.560253 ACTGTCATTTGTTTAACTAGCTGG 57.440 37.500 0.00 0.00 0.00 4.85
3441 3949 7.639039 TGAACTGTCATTTGTTTAACTAGCTG 58.361 34.615 0.00 0.00 0.00 4.24
3442 3950 7.801716 TGAACTGTCATTTGTTTAACTAGCT 57.198 32.000 0.00 0.00 0.00 3.32
3443 3951 7.750903 GGATGAACTGTCATTTGTTTAACTAGC 59.249 37.037 0.00 0.00 44.83 3.42
3444 3952 9.003658 AGGATGAACTGTCATTTGTTTAACTAG 57.996 33.333 0.00 0.00 44.83 2.57
3445 3953 8.918202 AGGATGAACTGTCATTTGTTTAACTA 57.082 30.769 0.00 0.00 44.83 2.24
3446 3954 7.823745 AGGATGAACTGTCATTTGTTTAACT 57.176 32.000 0.00 0.00 44.83 2.24
3447 3955 9.394477 GTTAGGATGAACTGTCATTTGTTTAAC 57.606 33.333 0.00 0.00 44.83 2.01
3448 3956 9.349713 AGTTAGGATGAACTGTCATTTGTTTAA 57.650 29.630 0.00 0.00 44.83 1.52
3449 3957 8.918202 AGTTAGGATGAACTGTCATTTGTTTA 57.082 30.769 0.00 0.00 44.83 2.01
3450 3958 7.823745 AGTTAGGATGAACTGTCATTTGTTT 57.176 32.000 0.00 0.00 44.83 2.83
3451 3959 7.936847 TGTAGTTAGGATGAACTGTCATTTGTT 59.063 33.333 0.00 0.00 44.83 2.83
3452 3960 7.450074 TGTAGTTAGGATGAACTGTCATTTGT 58.550 34.615 0.00 0.00 44.83 2.83
3453 3961 7.905604 TGTAGTTAGGATGAACTGTCATTTG 57.094 36.000 0.00 0.00 44.83 2.32
3454 3962 9.167311 GATTGTAGTTAGGATGAACTGTCATTT 57.833 33.333 0.00 0.00 44.83 2.32
3455 3963 8.321353 TGATTGTAGTTAGGATGAACTGTCATT 58.679 33.333 0.00 0.00 44.83 2.57
3457 3965 7.239763 TGATTGTAGTTAGGATGAACTGTCA 57.760 36.000 0.00 0.00 39.96 3.58
3458 3966 8.547967 TTTGATTGTAGTTAGGATGAACTGTC 57.452 34.615 0.00 0.00 39.96 3.51
3459 3967 8.950210 CATTTGATTGTAGTTAGGATGAACTGT 58.050 33.333 0.00 0.00 39.96 3.55
3460 3968 9.166173 TCATTTGATTGTAGTTAGGATGAACTG 57.834 33.333 0.00 0.00 39.96 3.16
3461 3969 9.167311 GTCATTTGATTGTAGTTAGGATGAACT 57.833 33.333 0.00 0.00 42.35 3.01
3462 3970 8.946085 TGTCATTTGATTGTAGTTAGGATGAAC 58.054 33.333 0.00 0.00 0.00 3.18
3463 3971 9.166173 CTGTCATTTGATTGTAGTTAGGATGAA 57.834 33.333 0.00 0.00 0.00 2.57
3464 3972 8.539544 TCTGTCATTTGATTGTAGTTAGGATGA 58.460 33.333 0.00 0.00 0.00 2.92
3465 3973 8.722480 TCTGTCATTTGATTGTAGTTAGGATG 57.278 34.615 0.00 0.00 0.00 3.51
3466 3974 9.553064 GATCTGTCATTTGATTGTAGTTAGGAT 57.447 33.333 0.00 0.00 0.00 3.24
3467 3975 8.539544 TGATCTGTCATTTGATTGTAGTTAGGA 58.460 33.333 0.00 0.00 0.00 2.94
3468 3976 8.722480 TGATCTGTCATTTGATTGTAGTTAGG 57.278 34.615 0.00 0.00 0.00 2.69
3482 3990 9.412460 TGGCTCTTAATAATTTGATCTGTCATT 57.588 29.630 0.00 0.00 33.56 2.57
3483 3991 8.985315 TGGCTCTTAATAATTTGATCTGTCAT 57.015 30.769 0.00 0.00 33.56 3.06
3484 3992 8.985315 ATGGCTCTTAATAATTTGATCTGTCA 57.015 30.769 0.00 0.00 0.00 3.58
3485 3993 9.674824 CAATGGCTCTTAATAATTTGATCTGTC 57.325 33.333 0.00 0.00 0.00 3.51
3486 3994 8.636213 CCAATGGCTCTTAATAATTTGATCTGT 58.364 33.333 0.00 0.00 0.00 3.41
3487 3995 7.597743 GCCAATGGCTCTTAATAATTTGATCTG 59.402 37.037 18.47 0.00 46.69 2.90
3488 3996 7.664758 GCCAATGGCTCTTAATAATTTGATCT 58.335 34.615 18.47 0.00 46.69 2.75
3489 3997 7.880059 GCCAATGGCTCTTAATAATTTGATC 57.120 36.000 18.47 0.00 46.69 2.92
3506 4014 5.520748 ACTATCCCCTATTTAGCCAATGG 57.479 43.478 0.00 0.00 0.00 3.16
3507 4015 6.542821 TGAACTATCCCCTATTTAGCCAATG 58.457 40.000 0.00 0.00 0.00 2.82
3508 4016 6.780198 TGAACTATCCCCTATTTAGCCAAT 57.220 37.500 0.00 0.00 0.00 3.16
3509 4017 6.520061 CGATGAACTATCCCCTATTTAGCCAA 60.520 42.308 0.00 0.00 31.82 4.52
3510 4018 5.046591 CGATGAACTATCCCCTATTTAGCCA 60.047 44.000 0.00 0.00 31.82 4.75
3511 4019 5.420409 CGATGAACTATCCCCTATTTAGCC 58.580 45.833 0.00 0.00 31.82 3.93
3512 4020 5.046520 ACCGATGAACTATCCCCTATTTAGC 60.047 44.000 0.00 0.00 31.82 3.09
3513 4021 6.014499 ACACCGATGAACTATCCCCTATTTAG 60.014 42.308 0.00 0.00 31.82 1.85
3514 4022 5.842328 ACACCGATGAACTATCCCCTATTTA 59.158 40.000 0.00 0.00 31.82 1.40
3515 4023 4.658901 ACACCGATGAACTATCCCCTATTT 59.341 41.667 0.00 0.00 31.82 1.40
3516 4024 4.232091 ACACCGATGAACTATCCCCTATT 58.768 43.478 0.00 0.00 31.82 1.73
3517 4025 3.858135 ACACCGATGAACTATCCCCTAT 58.142 45.455 0.00 0.00 31.82 2.57
3518 4026 3.323774 ACACCGATGAACTATCCCCTA 57.676 47.619 0.00 0.00 31.82 3.53
3519 4027 2.170607 CAACACCGATGAACTATCCCCT 59.829 50.000 0.00 0.00 31.82 4.79
3520 4028 2.561569 CAACACCGATGAACTATCCCC 58.438 52.381 0.00 0.00 31.82 4.81
3521 4029 1.940613 GCAACACCGATGAACTATCCC 59.059 52.381 0.00 0.00 31.82 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.