AutoCloner

Multiple sequence alignment - TraesCS3D01G397900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G397900	chr3D	100.000	2345	0	0	1	2345	512667811	512665467	0.000000e+00	4331.0
1	TraesCS3D01G397900	chr3D	79.076	368	60	4	1874	2225	591817355	591817721	1.080000e-58	237.0
2	TraesCS3D01G397900	chr3A	85.552	1765	128	46	1	1711	648242725	648241034	0.000000e+00	1729.0
3	TraesCS3D01G397900	chr3A	78.394	523	83	14	1793	2286	711657376	711657897	1.750000e-81	313.0
4	TraesCS3D01G397900	chr3B	84.701	1072	75	29	846	1851	675151661	675152709	0.000000e+00	989.0
5	TraesCS3D01G397900	chr3B	90.392	510	26	6	1837	2345	675152726	675153213	0.000000e+00	649.0
6	TraesCS3D01G397900	chr3B	88.352	352	18	5	1	334	675148391	675148737	3.630000e-108	401.0
7	TraesCS3D01G397900	chr3B	93.714	175	11	0	454	628	675151339	675151513	1.790000e-66	263.0
8	TraesCS3D01G397900	chr3B	92.737	179	5	3	646	824	675151503	675151673	3.870000e-63	252.0
9	TraesCS3D01G397900	chr5B	81.320	621	87	21	1750	2345	87141988	87141372	5.860000e-131	477.0
10	TraesCS3D01G397900	chr5B	86.486	74	8	2	1645	1718	695593876	695593805	1.930000e-11	80.5
11	TraesCS3D01G397900	chr5B	97.619	42	1	0	1792	1833	586823757	586823798	3.230000e-09	73.1
12	TraesCS3D01G397900	chr7D	83.044	519	67	8	1846	2345	167080573	167080057	3.550000e-123	451.0
13	TraesCS3D01G397900	chr5D	82.432	518	71	9	1844	2342	526037261	526037777	3.580000e-118	435.0
14	TraesCS3D01G397900	chr5D	80.303	528	92	9	1824	2343	392068839	392068316	2.830000e-104	388.0
15	TraesCS3D01G397900	chr5D	80.577	520	81	13	1845	2345	391314866	391314348	1.310000e-102	383.0
16	TraesCS3D01G397900	chr6D	80.855	585	77	16	1793	2345	421988470	421987889	5.990000e-116	427.0
17	TraesCS3D01G397900	chr6D	82.759	464	58	9	1902	2345	417992929	417992468	6.070000e-106	394.0
18	TraesCS3D01G397900	chr6D	78.652	356	48	15	1674	2014	356506698	356507040	6.570000e-51	211.0
19	TraesCS3D01G397900	chr6D	80.435	230	44	1	1793	2021	346781298	346781527	8.610000e-40	174.0
20	TraesCS3D01G397900	chr4A	81.002	579	69	15	1793	2342	503609053	503609619	2.790000e-114	422.0
21	TraesCS3D01G397900	chrUn	82.365	499	66	15	1867	2345	20702525	20702029	4.660000e-112	414.0
22	TraesCS3D01G397900	chr2D	80.952	546	83	10	1821	2345	373983207	373983752	1.680000e-111	412.0
23	TraesCS3D01G397900	chr2D	81.933	238	33	5	1793	2020	505801524	505801761	2.380000e-45	193.0
24	TraesCS3D01G397900	chr2A	81.971	477	60	10	1890	2345	431069749	431070220	4.730000e-102	381.0
25	TraesCS3D01G397900	chr2B	81.308	214	33	2	1793	2006	425213760	425213554	1.440000e-37	167.0
26	TraesCS3D01G397900	chr4D	91.379	58	5	0	1788	1845	442208799	442208742	1.930000e-11	80.5
27	TraesCS3D01G397900	chr7A	81.111	90	17	0	1630	1719	633281199	633281110	3.230000e-09	73.1
28	TraesCS3D01G397900	chr7A	84.000	75	11	1	1630	1703	632583312	632583238	1.160000e-08	71.3
29	TraesCS3D01G397900	chr7A	80.851	94	10	5	1630	1719	632867398	632867309	1.500000e-07	67.6
30	TraesCS3D01G397900	chr1A	85.333	75	4	3	1759	1828	554935407	554935335	1.160000e-08	71.3
31	TraesCS3D01G397900	chr1D	90.196	51	3	2	1783	1833	97213670	97213622	5.410000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G397900	chr3D	512665467	512667811	2344	True	4331.0	4331	100.0000	1	2345	1	chr3D.!!$R1	2344
1	TraesCS3D01G397900	chr3A	648241034	648242725	1691	True	1729.0	1729	85.5520	1	1711	1	chr3A.!!$R1	1710
2	TraesCS3D01G397900	chr3A	711657376	711657897	521	False	313.0	313	78.3940	1793	2286	1	chr3A.!!$F1	493
3	TraesCS3D01G397900	chr3B	675148391	675153213	4822	False	510.8	989	89.9792	1	2345	5	chr3B.!!$F1	2344
4	TraesCS3D01G397900	chr5B	87141372	87141988	616	True	477.0	477	81.3200	1750	2345	1	chr5B.!!$R1	595
5	TraesCS3D01G397900	chr7D	167080057	167080573	516	True	451.0	451	83.0440	1846	2345	1	chr7D.!!$R1	499
6	TraesCS3D01G397900	chr5D	526037261	526037777	516	False	435.0	435	82.4320	1844	2342	1	chr5D.!!$F1	498
7	TraesCS3D01G397900	chr5D	392068316	392068839	523	True	388.0	388	80.3030	1824	2343	1	chr5D.!!$R2	519
8	TraesCS3D01G397900	chr5D	391314348	391314866	518	True	383.0	383	80.5770	1845	2345	1	chr5D.!!$R1	500
9	TraesCS3D01G397900	chr6D	421987889	421988470	581	True	427.0	427	80.8550	1793	2345	1	chr6D.!!$R2	552
10	TraesCS3D01G397900	chr4A	503609053	503609619	566	False	422.0	422	81.0020	1793	2342	1	chr4A.!!$F1	549
11	TraesCS3D01G397900	chr2D	373983207	373983752	545	False	412.0	412	80.9520	1821	2345	1	chr2D.!!$F1	524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
617	3184	0.03309	GGAACGGGGGTACGATCATC	59.967	60.0	0.0	0.0	37.39	2.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1900	4610	1.06406	CAAATTCGGGATCGAGCAACC	59.936	52.381	1.84	0.0	46.75	3.77	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	53	4.147322	CGCTTAAGCCCGTGCGTG	62.147	66.667	21.53	1.09	44.33	5.34
53	54	4.460873	GCTTAAGCCCGTGCGTGC	62.461	66.667	17.00	0.00	44.33	5.34
82	83	0.888619	TCGTCGCTCCAATCTTCAGT	59.111	50.000	0.00	0.00	0.00	3.41
118	119	0.687354	ATCAGCACGTGTTCTTCCCT	59.313	50.000	18.38	0.07	0.00	4.20
138	157	0.250901	ACCAACACATGCTGTCTCCC	60.251	55.000	0.00	0.00	30.29	4.30
150	169	3.217626	GCTGTCTCCCCCAATTAATCAG	58.782	50.000	0.00	0.00	0.00	2.90
152	171	2.091885	TGTCTCCCCCAATTAATCAGCC	60.092	50.000	0.00	0.00	0.00	4.85
155	174	3.207321	TCTCCCCCAATTAATCAGCCAAT	59.793	43.478	0.00	0.00	0.00	3.16
158	177	5.147032	TCCCCCAATTAATCAGCCAATTAG	58.853	41.667	0.00	0.00	0.00	1.73
195	219	3.186047	CCGTGTGGGTTCGCGATC	61.186	66.667	10.88	9.61	42.80	3.69
396	426	2.029073	CTTGGTCAGGTGCGTCGT	59.971	61.111	0.00	0.00	0.00	4.34
470	3018	2.043752	CCATGCTCCCCACATGCA	60.044	61.111	0.00	0.00	42.89	3.96
607	3174	2.755469	CTTGCATGGGAACGGGGG	60.755	66.667	0.00	0.00	0.00	5.40
613	3180	1.383525	ATGGGAACGGGGGTACGAT	60.384	57.895	0.00	0.00	37.61	3.73
614	3181	1.405272	ATGGGAACGGGGGTACGATC	61.405	60.000	0.00	0.00	37.61	3.69
617	3184	0.033090	GGAACGGGGGTACGATCATC	59.967	60.000	0.00	0.00	37.39	2.92
618	3185	0.033090	GAACGGGGGTACGATCATCC	59.967	60.000	0.00	0.00	35.96	3.51
619	3186	1.741327	AACGGGGGTACGATCATCCG	61.741	60.000	0.00	0.00	42.69	4.18
620	3187	1.900016	CGGGGGTACGATCATCCGA	60.900	63.158	0.00	0.00	39.83	4.55
621	3188	1.863662	CGGGGGTACGATCATCCGAG	61.864	65.000	0.00	0.00	39.83	4.63
622	3189	1.533469	GGGGGTACGATCATCCGAGG	61.533	65.000	0.00	0.00	0.00	4.63
623	3190	0.826672	GGGGTACGATCATCCGAGGT	60.827	60.000	0.00	0.00	0.00	3.85
624	3191	1.038280	GGGTACGATCATCCGAGGTT	58.962	55.000	0.00	0.00	0.00	3.50
625	3192	1.269621	GGGTACGATCATCCGAGGTTG	60.270	57.143	0.00	0.00	0.00	3.77
626	3193	1.269621	GGTACGATCATCCGAGGTTGG	60.270	57.143	0.00	0.00	0.00	3.77
627	3194	1.037493	TACGATCATCCGAGGTTGGG	58.963	55.000	0.00	0.00	0.00	4.12
628	3195	1.595382	CGATCATCCGAGGTTGGGC	60.595	63.158	0.00	0.00	0.00	5.36
629	3196	1.595382	GATCATCCGAGGTTGGGCG	60.595	63.158	0.86	0.00	0.00	6.13
630	3197	2.311688	GATCATCCGAGGTTGGGCGT	62.312	60.000	0.86	0.00	0.00	5.68
631	3198	2.593468	ATCATCCGAGGTTGGGCGTG	62.593	60.000	0.86	0.00	0.00	5.34
632	3199	4.096003	ATCCGAGGTTGGGCGTGG	62.096	66.667	0.00	0.00	0.00	4.94
651	3218	4.675303	TGGGGGTGGAGACCAGGG	62.675	72.222	0.00	0.00	45.25	4.45
684	3260	1.610038	TCCAGTCAAAACATGCAGCAG	59.390	47.619	0.00	0.00	0.00	4.24
685	3261	1.415374	CAGTCAAAACATGCAGCAGC	58.585	50.000	0.00	0.00	42.57	5.25
826	3405	2.015227	CTCGCAGCCTCCTTCCTCTC	62.015	65.000	0.00	0.00	0.00	3.20
827	3406	2.057408	CGCAGCCTCCTTCCTCTCT	61.057	63.158	0.00	0.00	0.00	3.10
854	3433	1.147824	CAATCCATCGCAGCCTCCT	59.852	57.895	0.00	0.00	0.00	3.69
873	3452	4.521062	CCTCCTCCGCTGAAGCCG	62.521	72.222	0.00	0.00	37.91	5.52
874	3453	3.764466	CTCCTCCGCTGAAGCCGT	61.764	66.667	0.00	0.00	37.91	5.68
875	3454	3.997064	CTCCTCCGCTGAAGCCGTG	62.997	68.421	0.00	0.00	37.91	4.94
926	3505	3.203412	CCGGAGAGTCCCTCGTCG	61.203	72.222	0.00	0.00	42.89	5.12
930	3509	0.818445	GGAGAGTCCCTCGTCGCATA	60.818	60.000	0.00	0.00	42.89	3.14
937	3516	1.945394	TCCCTCGTCGCATAGTCTAAC	59.055	52.381	0.00	0.00	0.00	2.34
939	3518	1.674441	CCTCGTCGCATAGTCTAACCA	59.326	52.381	0.00	0.00	0.00	3.67
946	3525	2.351835	CGCATAGTCTAACCATCGGAGG	60.352	54.545	0.00	0.00	0.00	4.30
947	3526	2.891580	GCATAGTCTAACCATCGGAGGA	59.108	50.000	0.93	0.00	0.00	3.71
977	3575	2.319844	TCAGTTGGTCTGAGCTTCTCA	58.680	47.619	8.47	0.00	46.77	3.27
1082	3686	4.666253	GGTGGGGCAGAAGCAGCA	62.666	66.667	0.00	0.00	44.61	4.41
1083	3687	3.060615	GTGGGGCAGAAGCAGCAG	61.061	66.667	0.00	0.00	44.61	4.24
1212	3834	3.672295	CTTCCTGCCCCTCGTGCTC	62.672	68.421	0.00	0.00	0.00	4.26
1345	3967	1.068474	CGGCTCGTCTTGTTTGTAGG	58.932	55.000	0.00	0.00	0.00	3.18
1386	4009	2.126307	CCGTGTCGGTCAGAGCTG	60.126	66.667	0.00	0.00	42.73	4.24
1393	4016	0.898326	TCGGTCAGAGCTGGCTGTTA	60.898	55.000	10.42	0.00	41.99	2.41
1394	4017	0.737715	CGGTCAGAGCTGGCTGTTAC	60.738	60.000	0.00	0.00	36.84	2.50
1495	4124	9.353999	ACTTTTTGACTTTGTAATCACTTGAAC	57.646	29.630	0.00	0.00	0.00	3.18
1516	4145	2.083774	TCCGGCAATGTCAATTGAGAC	58.916	47.619	8.80	0.00	45.17	3.36
1542	4191	7.095607	CCTCACGGTATTTATGCTTATCAAGTC	60.096	40.741	0.00	0.00	0.00	3.01
1586	4235	7.562454	TGAAACAAGAAAGAAAATACTCCGT	57.438	32.000	0.00	0.00	0.00	4.69
1627	4276	9.515226	AAGACCATTTTGTAAGCTATGTTAGAA	57.485	29.630	0.00	0.00	0.00	2.10
1661	4310	0.171231	CGCATCCGTTGACAGAGAGA	59.829	55.000	0.00	0.00	0.00	3.10
1665	4314	2.516227	TCCGTTGACAGAGAGAGGAT	57.484	50.000	0.00	0.00	0.00	3.24
1679	4328	2.428890	GAGAGGATCAGTTCACGGACAT	59.571	50.000	0.00	0.00	37.82	3.06
1708	4357	0.679960	AGCCGGCCATCCAAAACTAC	60.680	55.000	26.15	0.00	0.00	2.73
1729	4378	2.715536	GAATACATCGGCCCCCAAC	58.284	57.895	0.00	0.00	0.00	3.77
1735	4384	1.203075	ACATCGGCCCCCAACTTTTTA	60.203	47.619	0.00	0.00	0.00	1.52
1736	4385	1.896465	CATCGGCCCCCAACTTTTTAA	59.104	47.619	0.00	0.00	0.00	1.52
1781	4430	5.371629	GCACGTTCAAAATAGCCGTATATC	58.628	41.667	0.00	0.00	0.00	1.63
1786	4453	7.115947	ACGTTCAAAATAGCCGTATATCTTAGC	59.884	37.037	0.00	0.00	0.00	3.09
1790	4457	9.635520	TCAAAATAGCCGTATATCTTAGCTAAC	57.364	33.333	0.86	0.00	39.33	2.34
1807	4474	8.654230	TTAGCTAACAAAATGTTCAAATGCAA	57.346	26.923	0.86	0.00	40.22	4.08
1850	4527	3.297134	ACACCTCAACAATGTTGTCCT	57.703	42.857	23.41	6.25	41.31	3.85
1911	4621	4.024556	CAGTTATTCATGGGTTGCTCGATC	60.025	45.833	0.00	0.00	0.00	3.69
2035	4765	1.522668	CATCCACGGTCATGTTGTGT	58.477	50.000	11.68	0.00	31.75	3.72

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	1.002359	CATGCATGCTGAGCTGTCATC	60.002	52.381	20.33	0.00	30.18	2.92
10	11	2.477880	CATGCATGCTGAGCTGTCA	58.522	52.632	20.33	0.54	0.00	3.58
52	53	4.122515	GCGACGACGTCAGCTTGC	62.123	66.667	26.26	17.20	41.98	4.01
53	54	2.429236	AGCGACGACGTCAGCTTG	60.429	61.111	28.82	15.49	38.47	4.01
138	157	9.696917	GTTAATCTAATTGGCTGATTAATTGGG	57.303	33.333	14.63	0.00	41.57	4.12
150	169	3.488553	GGTGGCGTGTTAATCTAATTGGC	60.489	47.826	0.00	0.00	0.00	4.52
152	171	4.955925	TGGTGGCGTGTTAATCTAATTG	57.044	40.909	0.00	0.00	0.00	2.32
155	174	3.741249	TGTTGGTGGCGTGTTAATCTAA	58.259	40.909	0.00	0.00	0.00	2.10
158	177	2.606065	GGTTGTTGGTGGCGTGTTAATC	60.606	50.000	0.00	0.00	0.00	1.75
396	426	1.052124	AGACGTGTTGGTTGAGGGGA	61.052	55.000	0.00	0.00	0.00	4.81
438	505	3.680156	TGGAATTCCAAGTGCGGC	58.320	55.556	25.13	0.00	44.35	6.53
447	514	0.033208	TGTGGGGAGCATGGAATTCC	60.033	55.000	18.17	18.17	0.00	3.01
448	515	1.684983	CATGTGGGGAGCATGGAATTC	59.315	52.381	0.00	0.00	39.82	2.17
449	516	1.784358	CATGTGGGGAGCATGGAATT	58.216	50.000	0.00	0.00	39.82	2.17
450	517	0.757935	GCATGTGGGGAGCATGGAAT	60.758	55.000	7.29	0.00	42.72	3.01
581	3146	2.429571	CCATGCAAGCACACGCAC	60.430	61.111	0.00	0.00	41.79	5.34
582	3147	3.672447	CCCATGCAAGCACACGCA	61.672	61.111	0.00	0.00	43.45	5.24
607	3174	1.269621	CCCAACCTCGGATGATCGTAC	60.270	57.143	0.00	0.00	0.00	3.67
613	3180	3.000819	ACGCCCAACCTCGGATGA	61.001	61.111	0.00	0.00	0.00	2.92
614	3181	2.819595	CACGCCCAACCTCGGATG	60.820	66.667	0.00	0.00	0.00	3.51
629	3196	4.035102	GTCTCCACCCCCAGCCAC	62.035	72.222	0.00	0.00	0.00	5.01
632	3199	3.721706	CTGGTCTCCACCCCCAGC	61.722	72.222	0.00	0.00	42.99	4.85
633	3200	3.011517	CCTGGTCTCCACCCCCAG	61.012	72.222	0.00	0.00	42.99	4.45
634	3201	4.675303	CCCTGGTCTCCACCCCCA	62.675	72.222	0.00	0.00	42.99	4.96
635	3202	4.348495	TCCCTGGTCTCCACCCCC	62.348	72.222	0.00	0.00	42.99	5.40
636	3203	2.689034	CTCCCTGGTCTCCACCCC	60.689	72.222	0.00	0.00	42.99	4.95
637	3204	2.689034	CCTCCCTGGTCTCCACCC	60.689	72.222	0.00	0.00	42.99	4.61
638	3205	2.689034	CCCTCCCTGGTCTCCACC	60.689	72.222	0.00	0.00	44.10	4.61
639	3206	1.687493	CTCCCTCCCTGGTCTCCAC	60.687	68.421	0.00	0.00	0.00	4.02
640	3207	2.780693	CTCCCTCCCTGGTCTCCA	59.219	66.667	0.00	0.00	0.00	3.86
641	3208	2.766229	GCTCCCTCCCTGGTCTCC	60.766	72.222	0.00	0.00	0.00	3.71
642	3209	2.766229	GGCTCCCTCCCTGGTCTC	60.766	72.222	0.00	0.00	0.00	3.36
643	3210	4.423209	GGGCTCCCTCCCTGGTCT	62.423	72.222	0.00	0.00	43.13	3.85
647	3214	4.787280	ACTCGGGCTCCCTCCCTG	62.787	72.222	3.11	0.00	44.30	4.45
651	3218	3.151022	CTGGACTCGGGCTCCCTC	61.151	72.222	3.11	0.00	0.00	4.30
684	3260	1.804151	TGAACAACGTGATGGCTAAGC	59.196	47.619	0.00	0.00	0.00	3.09
685	3261	3.810373	GTTGAACAACGTGATGGCTAAG	58.190	45.455	1.96	0.00	0.00	2.18
809	3388	2.015227	GAGAGAGGAAGGAGGCTGCG	62.015	65.000	0.00	0.00	0.00	5.18
826	3405	0.926155	CGATGGATTGTGCGTCTGAG	59.074	55.000	0.00	0.00	0.00	3.35
827	3406	1.083806	GCGATGGATTGTGCGTCTGA	61.084	55.000	0.00	0.00	0.00	3.27
854	3433	3.077556	GCTTCAGCGGAGGAGGGA	61.078	66.667	0.00	0.00	0.00	4.20
919	3498	1.674441	TGGTTAGACTATGCGACGAGG	59.326	52.381	0.00	0.00	0.00	4.63
926	3505	2.891580	TCCTCCGATGGTTAGACTATGC	59.108	50.000	0.00	0.00	0.00	3.14
930	3509	2.761208	CACTTCCTCCGATGGTTAGACT	59.239	50.000	0.00	0.00	0.00	3.24
937	3516	1.522569	GGACCACTTCCTCCGATGG	59.477	63.158	0.00	0.00	41.95	3.51
946	3525	0.106149	ACCAACTGACGGACCACTTC	59.894	55.000	0.00	0.00	0.00	3.01
947	3526	0.106149	GACCAACTGACGGACCACTT	59.894	55.000	0.00	0.00	0.00	3.16
970	3568	2.748605	CACAGGGATCGTATGAGAAGC	58.251	52.381	0.00	0.00	0.00	3.86
977	3575	2.082140	TGTAGGCACAGGGATCGTAT	57.918	50.000	0.00	0.00	0.00	3.06
1322	3944	3.509137	AAACAAGACGAGCCGCCGA	62.509	57.895	8.04	0.00	0.00	5.54
1393	4016	4.521536	TGTACTACAGGCTAGATCTGGT	57.478	45.455	5.18	8.61	36.62	4.00
1394	4017	5.361285	AGTTTGTACTACAGGCTAGATCTGG	59.639	44.000	5.18	2.94	36.62	3.86
1460	4089	8.658499	TTACAAAGTCAAAAAGTAGTCCTCTC	57.342	34.615	0.00	0.00	0.00	3.20
1477	4106	4.755123	CCGGAGTTCAAGTGATTACAAAGT	59.245	41.667	0.00	0.00	0.00	2.66
1495	4124	2.096496	GTCTCAATTGACATTGCCGGAG	59.904	50.000	5.05	0.00	39.90	4.63
1613	4262	5.295787	CCGGTTTGCATTCTAACATAGCTTA	59.704	40.000	0.00	0.00	31.09	3.09
1661	4310	1.208052	CCATGTCCGTGAACTGATCCT	59.792	52.381	0.00	0.00	0.00	3.24
1665	4314	1.623311	ACATCCATGTCCGTGAACTGA	59.377	47.619	0.00	0.00	35.87	3.41
1744	4393	3.067601	TGAACGTGCGGATGTATGTAGAT	59.932	43.478	0.90	0.00	29.12	1.98
1745	4394	2.424246	TGAACGTGCGGATGTATGTAGA	59.576	45.455	0.90	0.00	29.12	2.59
1746	4395	2.804647	TGAACGTGCGGATGTATGTAG	58.195	47.619	0.90	0.00	29.12	2.74
1747	4396	2.943449	TGAACGTGCGGATGTATGTA	57.057	45.000	0.90	0.00	29.12	2.29
1748	4397	2.087501	TTGAACGTGCGGATGTATGT	57.912	45.000	0.90	0.00	0.00	2.29
1781	4430	8.296799	TGCATTTGAACATTTTGTTAGCTAAG	57.703	30.769	6.38	0.00	41.28	2.18
1786	4453	7.908230	ACTGTTGCATTTGAACATTTTGTTAG	58.092	30.769	0.00	0.00	41.28	2.34
1790	4457	7.467557	ACTACTGTTGCATTTGAACATTTTG	57.532	32.000	0.00	0.00	32.96	2.44
1850	4527	2.832129	AGCATCTCTGGACGGTTAAAGA	59.168	45.455	0.00	0.00	0.00	2.52
1900	4610	1.064060	CAAATTCGGGATCGAGCAACC	59.936	52.381	1.84	0.00	46.75	3.77
1911	4621	9.579768	TTATTGAAATACATCAACAAATTCGGG	57.420	29.630	0.00	0.00	41.78	5.14
2182	4913	4.257267	CCCAATTGGTCAGAAAAAGTCC	57.743	45.455	22.91	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.