>input_sequence_83170
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---ATGGAGAGGAGAGCGGCGAGGGGCACCTCTGATCACCGTAGGCGAATGCAGATGCCGCCGGCGCCGGTGGGGCAGAA
GCAGCAGCAGC------------------CGCAGCGCCGCGGGGGGCCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGG
GCTGCTTCACCATCCAGCTGCTCATGGTGTTCCTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCCCTCGTGCTCCCGCCG
CTGCCCCCGCCGCCGCTCTCGCTGCTGCTCGTGCCCGTCTGCCTGCTCGCCGTCCTCGCCGCGCTGGCCTTCGTCCCGCT
CGACGCCCACAACAACGTCGTCGTCGGCGGCTCGTCTTGTTTGTAG----------------------------------
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>chr3D_1_TraesCS3D01G397900
GCAGACGAGATGACAGCTCAGCATGCATGCATACACGCTTAAGCCCGTGCGTGCAAGCTGACGTCGTCGCTCCAATCTTC
AGTCGAGTCGCCTACTGCAATCAGCACGTGTTCTTCCCTACCAA------------------CACATGCTGTCTCCCCCA
ATTAATCAGCCAATTAGATTAACACGCCA-----CCAACAACCGTGTGGGTTCGCGATCGATGACGACGATGCGTCGGCG
CTCATCCATGCGTCCCGAAGTAGAAAGCGGCGGCGACAGGGAAGGCACACC-GATGCCGCGCCGTACGCATGCCCCCGGA
CACTGAACCTGCACGCGGGCAAGCTGTCGGACGGCCGGCGGCGACAGATCGGGAACGGGAAAGGCGACCGCCGACTGCAC
GCA-----CTTGGTCAGGTGCGTCGTCCCCT---------CAACCAACACGTCT--------------------------
--TAATGCGCCGCTAATCCGTCCCGCCGCACTTGGAATT-----------------------------------------
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------------------------------------CCATGCTCCCCACATG----CATCCACTGGCTCCTCCACATACG
CTGCACCTGCTGCCCC-----------------GAGATCTGGACGTCAACAGCCCCGGCCGCACGCGATCTCCGACCCGA
TCTCGCCGTACGGAGCCGCGACCCGGTG--CGTGTGCTTGCATGGGAACGGGGGTACGATCATCCGAGGTTGGGCGTGGC
TGGGGGTGGAGACCAGGGAG---------GGAGCCCGAGTCCAGTCAAAACATGCAGCAGCTTAGCCATCACGTTGTTCA
ACGAACCTGCCCCGAAGCAAGCAGCCGCCCCACTTTGATCCTACTCCTACTAG---TACTAATAAAGCCGTTGAACAACC
ACCAGCTCGATCCCCCCTTCTATTGCTCGCAGCCTCCTTCCTCTCTCAGACGCACAATCCATCGCAGCCTCCTCCCTCCT
CCGCTGAAGCCGTGCCGCGGCTACGACGAGCTCGTCCGACTGGCCGGCCGGAGAGTCCCTCGTCGCATAGTCTAACCATC
GGAGGAAGTGGTCCGTCAGTT----------G---------GTCTGAGCTTCTCATACGATCCCTGTGCCTACAAG----
--GATGGAGAGGAGAGCGGCGAGGGGCACCTCTGATCACCGTAGGCGAATGCAGATGCCGCCGGCGCCGGTGGGGCAGAA
GCAGCAGCAGC------------------CGCAGCGCCGCGGGGGGCCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGG
GCTGCTTCACCATCCAGCTGCTCATGGTGTTCCTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCCCTCGTGCTCCCGCCG
CTGCCCCCGCCGCCGCTCTCGCTGCTGCTCGTGCCCGTCTGCCTGCTCGCCGTCCTCGCCGCGCTGGCCTTCGTCCCGCT
CGACGCCCACAACAACGTCGTCGTCGGCGGCTCGTCTTGTTTGTAGGGAGGCTGCATTTTTT-TTTCTTTTCCGTGTCGG
TCAGAGCTGGCTGTTACCAGATCTAGCCTGTAGTACAAACTGTGAACCTTTTTTTA------AGATTAGAATTATTAGGA
TTAATTAAGAGAGGACTACTTTTTGACTTTGTAATCACTTGAACTCCGGCAATGTCAATTGAGACCTCACGGTATTTATG
CTTATC--------------------AAGTCGAATCCATAAATCATTCGTTGAAACAAGAAAGAAAATACTCCGTGTGTC
CAATAATATAAGACCATTTTGTAAGCTATGTTAGAATGCAAACCGGACACCGCATCCGTTGACAGAGAGAGGATCAGTTC
ACGGACATGGATGTGGGAGCCGGCCATCCAAAACTACCCGAATACATCGGCCCCCAACTTTTTAAAAAAAAAATCTACAT
ACATCCGCACGTTCAAAATAGCCGTATATC------------------TTAGCTAACAAAATGTTCAAATGCAACAGTAG
TTCTAA----------TTTAAATATTACACCTCAACAATGTTGTCCTCT-------------------------------
--TTAACCGTCCAGAGATGCTTAATCAGATCTATCTTCAGTTATTCATGGGTTGCTCGATCCCGAAT-TTGTTGATGTAT
TTCAATAAATTCATCAAATGT-GGCCGGATTTTGATCTAGAAGTTCAATAGGATCATCCATGTTCTCAAATTCAAGACCT
ACGGCGGCA------------------TCCACGGTCATGTTGTGTATGATCACACAACATGTCATCACCTCCCACAAGGT
C-TTTGGATCCCATTGTTTAGCAGGTCCAAAAACAATTACAAAACGTACCTGCAGAACTCCAACTGCACTCTCAACATCC
TTTCTAGCCGCTTCTTGCTTTTGCGAAAAGTGGGACTTTTTCTGACC-AATTGGGTCAGAGATGGTCTTGACAAAGGTAG
CTCACGAAGAATAGATACTGTCAACCAGA---TAGTAGCCCATGTTGTATTCATG-CCCATTGACAGTATAGTGGCAAGG
AGGG----TCCCTTTAGTCACCCTGGCAAACAATGGTGATCGCT
>chr3A_1
GCAGACGATA--ACAGCTCAGCATCCATGCACACACGCTTAAGCCCGTGCGTAGAAGCTGACGTCGTCGCTCCAATCTTC
AGCCGAGTCGCCTGCTGCAATCAGCACGTGTTCTTCCCAGCCAAGAACTAGTACAGTACGAGCACATGCTGTCTCCTCCA
ATTAATCAACAAACTAAATTAGCACGCCACCATTCCAACAACCGT--------------GATGACGACGACGCGTCGGCG
CACGATGGT--GTCCCGAATTAGAAAGCGGCGGCGACAGGGAAGGCACACCCGATGCCGCGCCGTACGTATGCCCCGGGA
CACTGAACCTGCGCGCGGGCAAGCTGTCGGACGGCCGGCGGCGACAGATCGGGGACGGGAAAGGCGACCGCCGACTGCAC
GCA-----CTTGGTCAGGTGCGTCGCCCCCTTCCCTCAACCAACAAACACGTCC--------------------------
--TAATTGGGCTAATACGACCTGGAATT----------------------------------------------------
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-------------------------------------CATGCTCCCCACATGCGTCCGTCCACTGGCTCCTCCACATACG
CCGCACCTGCTGCCCCCCACTGCCCGAGACGCCGAGATCTCCACGTCGCCGGCCCCGGGCGCACGCGATCTCCGACCCGA
TCTCGCCGTACGGAGCCACGACCCG--G--CGTGTGCTTGCATGGGAACGGAGATGCGACTAT-----------------
-----------ACGAGGTTGGGCGTGGCTGGAGCCCGAGTCCAGTCAAAACATGCAGCAA---AGCCATCACGTTGTTCA
ACGAACCTGCCCCGAAGCAAGCAGCCGCCCCACTTTGATCCTGCTCCTACTCCTACTACTAATAAAGCCGTTGAACCACC
ACCAGCTCGATCCCCCCTTCTATTGCGTGCAGCCTCCTTCCTCTTCCAGAAGCACAATCCATCGCAGCCTCCCCCCTCCT
CCGCTGAAGCCTCATACCTCCCCCGACGAGCTCGTCCGACTGGCCGGCCGGAGAGTCTCTCGT-----------------
---------GGTCCGTCAGTTGCCTTCGCGGG---------GTCTGAACTTCACGTACGATCCCTGCGCCTACAAG----
--GATGGAGAGGAGAGCGGCGAGGGGCACCTCTGATCACCGTCGGCGAATGCAGATGCCGCCGGCGCAGGTGGAGCAGA-
--------AGC------------------CGCAGCGCCGCGGGGGGCCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGG
GCTGCTTCACCATCCAGCTGCTCATGGTGTTCCTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCGCTCGTGCTGCCGCCG
CTGCCCCCGCCGCCGCTCTCGCTGCTGCTCGTGCCCGTTTGCCTGCTCGCCGTCCTCGCCGCGCTCGCCTTCGTCCCGCT
GGACGCCCACAACAACGTCGTCGGCGGCGGCTCGTCTTGTTTGTAGAGAGGCTGCATTTTTTCTTTCTTTTCCGTGTCGG
TCAGAGCTAGCTGTTT-CAGATCTAGCCTGTAGTACAAACTGTGAACCTTTTTTTCTAGATTAGATTAGAA--ATTAGGA
TTGATTAACAGAGGACTACTTTTTGGCTTTGTAATCACTTGAATTCCGGCAATGTCAATTGAGATCTCACGGTATTTATG
CTTATC--------------------AAGTGGAATCCATAAATCATTTGTTGAATAAAGAAAGAAACTACTCCGCGTGTC
CCATAATAAAAGACCATTTTGCAAGCTATGTTAGACTGCAAACGGAACACCGCATCCGTTGACAGACAGGGACAGGTTTG
-CGGGCACGGATGTAGGAGCCGGCCATCCAAGACTAACC-----------------------------------------
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--------------------------------------------
>chr3B_1
GCAGACGATA--ACAGCTCAGCATGCATGCATACACGCTTAAGCCCGTGCGTAGAAGCTGACGTCGTCGCTCCAATCTTC
AGCCGAGTCGCCTACTGCAATCAGCACGTGTTCTTCCCAACCAAGAACTAGTACAGTACGAGCACATGCTGTCTCCTCCT
ATTAATCAACAAACTAAATTAATTCGCCG-----CCAACAACCGTGTGGGTTCGCGATTGAT---GACGATGCGTCGGCG
CTCATCCATGCGTCCCGAAGTAGAAAGCGGCGGCGACAGGGAAGGCACACC-GGTACCGCGCCGTACGCATGCCCCCGGA
CACTGAACCTGCACGCAGGCAAGCTGTCGGACGGCCGG----------------------------ACCGCCGACTACTA
CTACTCGCCTTGGCCAGGTGCGTCGCTCCCT---------CAACCAACGCGCCTTGATTAGAACGTACGGGGCGGGTCGC
AGTAATGCGCCGCTAATCCGTCCCACCACACTTTTTTTTTCGGGGAACTTCAGAGAGCTTTATTCAACAAAGACATTCGC
TGAGCAGTCAGCCAGAAGGTTGCTGATCAGGAAGCTAGGGGTAGTATCTAACCAGCTCTCAGTCACATTAAGCGTAGTAC
CACGCTTAGCACACAGATGTGCAGGACTGTTTGCCGATCTTATTACATGTTGAATATTGAAAGAAATAAAACTAAGAGCT
AGCTCTCCAATTTCAGAGAAGATAGGTGCTATCACTGACCGGTCAATGTAGCGAGAGTTCCAGAGGTTAACTGCCTCTAG
ACAGTCGGTCTCCATGATGACATGTGTGTAGCCTCGTAGTGTTGCGAATCTCACTCCTTCCTTAAGCGCCAAAGCCTCCG
CAATGAGGGGGTCCGTGACACCTGAAGACGGCTTACACCATGCACCCTTGAAGCCCGATGAGGAGCGTGCAACACCCCCT
AGCCCTGCATTCCCATCGTCGAGATGAACAGCGGCATCTGTGTTGATCTTTATGTATGGGTCCTCAGGGGGTTGCCAACC
ATACCCCAGCAGTGGTGAAGCGAGCTGCACGGATATATCCAGAATGGCTAGATCCTCTCTTATTTTCCTTACTGAAGAAG
CTGGATCCCACCCTTCTCTGTCATGCGTCAGTCGATTGTGAGACATCCATATTGCCCACATCACCGTGACGAAAATTGCC
CGATCTTTATCAGAGAACCGGGGTTCACAAAGGATATCCTTTGTCCAAGTATGAGGATGGAGACGTGGCAGGTGAACTTC
AAAGACAAGTCTGGCCTCCTCCCAGAACCGGCGCGCATGCGTACACTGCAACAACGCGTGTTCCAAATCCTCGTCCATGG
CCAAGCAAATCTTGCACGTGCTTGTTTCTCTTATGTGGCGATATCTTAGGGTGCATTCATCAGGAATGATACCCCTCAAC
ACCCGCCACCAGAACACTCTGACTTTTGGGACTACTTTGAGTTTCCATAATGCATCCCACATCTGTTTTTGATCCATTGA
AGTGTCGATAATCTGCCCCTCATCTAGAGCCAAACGCTCTTTTTGATTCACGAGAGCTCGATACGCCGATTTAACAGAGT
AAATGCCTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGATTTCTCATGTGCCCAAGCAAGGATATCTTCGCCGCCTCCCTGTCGCAATGGTATGTTAAGAATGGCAGCGGCA
TCAGGTGCAATGAAAATCCCTCGCACCAACTCCTGACGCCATGTCCAGTTAGTTGTATCAATCAGCTCGTTAACGGTCTG
AATCACCGTATTTACTGGACGCAGCAGTGGAGTCATTGAGACAGTGGAGGGAATCCACTTGTCTTCCCATACAGAGATGG
AAGTACCGGATCCGACTCGCTTCAGCAGCCCGGTTTGTAAAGCTTCCCGGCCAGCTATAATCGCTCTCCGGGTAGCTGAG
GATGATTTAGGGACTGTTGCGTGAAGGAAATCCGAGTCTGGAAAATATCTTCCTTTCATAACCTTGGCGCACAGGGAGTT
AGGGTTCATCATAAAACGCCATCCATGCTTCCCTAACAGCGCCAAGTTAAACAGCCGAAAATCACGGAATCCCATTTCGC
CTTTGCACTTTGGCATGGCAAGTTTGTCCCAAGCGATCCAATGTAAGGAGTTCCTATCAATAGAGCTTCCCCATCAAAAT
TTTGCCATGCTCGAGGTGAGACTTTTGCACACCTTTTTCGTAAACAGAAAACAACTCATGCTAAACGTCGGGATGGCTTG
AACAATGGATTTTAAAAGTGTCTCTCTGCCGGCGCAAGCAAATAGCCTCTCTGCCCAACCTTGCATGCTGCCTCGTGCCC
GATCAACTAGATATTCAAAGGTTCCACTAGTGATCTTGCCAACGGCAGTGGGTAGGCCGAGGTAGCGTTCTGAGAAAGCT
TTGACTTGTACTTCAAGAAGTTGCTTCAAAGTTTGTCTAAGGGTCGTTGGCGTGTTTGGGCTGAAGAATATAGAGCTCTT
GCTCCTGTTGACACACTGTCCAGAAGCATCCCCATATATTGCAAGAATATCATTCAGCCTAGCCGCGCTTTCCTCATTCG
CCTTGATGAAGATGAGGCTATCATCAGCGAATAGTAGGTGATTCATCCATGGTGATCTGAAGTTCACTCGGATACCCCTG
TCCACAAAGTCCCCGTAGTGCTTCAGAAGTGAGGTAAAACCTTCGGCGCAAAGCAAGAACAAATAATGGGAGATTGGACA
CCCCTGCCGAAGCCCTCTGGATGGGTCGAAATAAGGCTGCAGCTCTCCATTCACACGGACAGAGAACCGAACAGATGTGA
CACACTTCATGATCAGCCTGACCAGATTAGCATTGAACCCCAACTTCAAGAGTATGGCTTCCAGAAAGTGCCATTCGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGATCGCACCATGCTCTCCACATG----CGTCCACTGGCTCCTCCACATACG
CTGCACCTGCTGCCCC-----------------GAGATCTGGACGTCAACAGCCCCGGGCGCACGCGATCTCCGACCCGA
TCTCGGCGTACGGAGCCACGACCCG--GTGCGTGTGCTTGCATGGGAACGGGAATACGACTAT-----------------
-----------ACGAGGTAG---------GGAGCCCGAGTCCAGTCAAAACATGCAGC---TTAGCCATCACGTTGTTCA
ACGAACCTGCCCCGAAGCAAGCAGCCGCCCCACTTTGTTCCTAC----ACTAG---TACTAATAAAGCCGTTGAACAACC
ACCAGCTCGATCCCCCTTTCTATTGCTTGCAGCCTCCTCCTTCCTCCGTCCAGGCCGCGGCT------------------
-------------------------ACGAGTTCTTCCGACTGGCCGGCCGGAGAGTTTCTCATCTCATCGTCTAATCGTC
GGAGAGAGTGGTCCATCAGTT----------GCCTTCCCGCGTCTGAATTTCTCGTACAATCCCTGTGGCCTGTGCCTAC
AAGATGGAGAGGAGAGCGGCGAGGAGAAGCTCCGCCCACCACAGCCGAATGCAGATGCCGCCGGCGCCGGTGGGGCAGA-
--------AGCAGCACCAGCAGACGCAGACGCAGCGCCGCGGGGGGTCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGG
GCTGCTTCACCATCCAGCTGCTCATGGTGTTCCTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCGCTCGTGCTGCCGCCG
CTACCCCCGCCGCCGCTCTCGCTGCTGCTGCTGCCCGTGTGCCTGCTCGCCGTCCTCGCCGCGCTGGCCTTCGTCCCGCT
CGACGCCCACAGCAACGTCGTCGGCGGCGGCTCGTCTTGTTTGTAGAGAGGCTGCATTTT------CTTTTCCGTGTCGG
TCAGAGCTAGTTGTTT-CAGATCTAGCCTGTAGTACAAACTGTGAACCTTTTTTTA------AGATTAGG---ATTAGGA
TTAATTAACAGAGGACTACTTTTTGGCTTTGTAATCACTTGAATTCCGGCAATGTCAATTGAGATCTCACGGTATTTATG
CTTATCAACTGAAAAGAACTTCCAGGAAGTGGAATCCATAAATCATTCGTTGAAACAAGAAAGAAAATACGCGTGTCCAA
TAATAGTATAAGACCATTTTGCAAGCTATGTTAGACTGCAAACCGGACACCGCATCTGTCGACAGAGAAGGGACCAGTCC
ATAAACACGGATATGGGAGCCGGCCATCCAAAACTAGCCGAATACATCAACCCTCAATTTTTTTTAAAAAAATCTA--AT
GCATCTGCACGTTCAAAATAGTTCCATATATCTAGTTTTAGTTTGAGATTAGTTAAAAAAATGTTCAAATGCAGCAGTAG
TTTTAATTTAAATA----------TTACACTTCAACAATGTTGT-CCTAGTTAAAAAAAACAAACAAGCAATGTTGTCCT
TGTTAACCGTCCACGGATGCTCAATCAGATCTATCTTCAGTTATTCATGAGTTGCTCGATGCCGAAT-TTGTTGATGTAT
TTCAACAAATTCATCAAATGT-AGCCGGATTTTGATCTTGAAGTTCAATAGGATCATCCATGTTCTCAAATTCAAGACCT
ACGGCCGCA------------------TCCATGGTCATGTTGTGCATGATCACACAACATGTCATCACCTCCCACAAGGT
C-TCTAGATCCCATTGTTTAGCAGGTCTAAAAACAACTGCAAAACGTACCTGTAGAACTCCAACTGCACTCTCAACATCT
TTTCTAGCCGCTTCCTGCTTT----------------------GACC-AATTGAGTCAGAGATGGTCTTGACAAAGGTAG
CTCATGAAGAATAGATACTGACAATCAGA---TAGTAGCCCATGTTGTATGCATG-CCCATTGACAGTATAGTGGCAAGG
AGGG----TCCCTTCAGTCACCCTGGCAAACAATGGTGATCGCT
>chr5B_1750
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-----------------------------------------------------------------------------CAT
ACATCCTCACGCTCAAAATAGCCGTTATAGTTTACCT------------------AAAAGATGTTCAAATGCAGAAGTAG
TTATAATTCAAATA----------TTACACTCCAATAATGTTGT-CCCC-------------------------------
--TTAACCGCCCACATATGCTCAATCATATTTTTCTTCGGATGCTCATGAGTTGCTCGATGCCGAATTTTGTTGATGCAT
TTGAATAAAGTCATCAAATAT-GGCCGGATTCTGGTTCGAAAGTTCAATATGATCATCCATGTTCTCAAATTCAAGACCT
---ACGGCAACATCCTCACCCTCATCCTCGATAATCATATTGTGCATGATCACACAACATGTCATCACCTCTCATAAGGT
TTTTCGGATCCCACTGTTTAACGGGTCCATGAACAACAACAAAACGTGTCTGCATAACTCCAAATGCCCTCTCAATATCC
TTTCTTGCCGCTTCTTGTTTTTGGGCAAAGTGAGACTTTTTTCTCGTTAACTGGGTCAGAGATGGTCTTGACAAATGTAG
CCCACATAAGGTAGATACGACCAACCGGA---CATTAGCCCATGTTCTATTCATG-ACCATTGACAGTATAGTGGCAAGG
GGAAGCTTTCCTTTCGGTCAGTCTGGCATACAATAGTGATCACT
>chr3A_1793
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----------------------------------------------------------AAATGTTGAAATGCAGCAGTAG
TTCTAATTTAAATAAGTTTAGATATTACAATCCAACATTGTTGTCCCCT-------------------------------
--TTAACCGCCCACAAATTCTTAATTAGATATTCTTTCGGTTGCTTGTGAGTTACTCCATGTCGAAT-TTGTTGATGCAT
TTGTACAAACTCTTCAAATGT-GGCTGGAATCTGGTCAGGAAGTTTGATAGGATCATCCATGTTCTCAAATTCAAGACTT
GCGGCGGCAACATCGTCACCCTCATCCTCCATGATCATGTTGTCCATGATCACACAACACGTCATCACCTCCCACTAGCT
C-TCCAGATCCCATTGTTTAGCAGGTCCACGAAAAACTGCAAAACATGCATGCAGAACTACAAATGCCCTCTCAACATAT
TTTCTAGCCGCTTCTTGTCTTTGGGCAAAGTGAGACTTTTTTTGGCC-AACTGGGTTAGAGATGGTGTTAACAAAGGTAG
CCTACGGAGGATAGGTACCGCCAACCAGA---TACTAATCCGTGTTGTACTTATG-CCCAT-------------------
--------------------------------------------
>chr6D_1793
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----------------------------------------------------------AAATGTTCAAATGCATCAGTAG
TTCTAATTTAAAAAAATTCAAATATTACGCACCAACATTGTTGTCCCTC-------------------------------
---TTACCGCCCACAGATACTCAATCATATATTCTTTCAGTTGCTTGTGAGTTGCTCGATACCGAAT-TTGTTGATGCAT
TTGAACAAACTCTTCAAAAGT-GACCGGATTGTGGTCGGGAAGTTCGATAGGATCATCCATGTTCTCAAATTCAAGACCC
---GCGGCAGCATCCTTACCATTATCCTCCACCATCATGTCGTGCATGATCACACAACAGATCATCACCCCCCACAAGGT
C-TTCGGCTCCCATTGTTTAGCAGGTCCACAAACAACTGCAAAACGTGCCTGCAGAACTCTAAATGCTCTCTCAACATTC
TTTCTAGCTGCTTCTTGACTTTGGGCAAAGTGATACTTTTTCTGGCC-AACTGGGTTAGAGATGGTGTTGACAAAGTTAG
CCCACAGAGGATAGATACCGTCAACCAGA---TAGTAGCTCATGTTGTACTCACGCCCCATTGGCAGTATAGTGGCGAGG
ATGAGCTTTTCCTCCAGTCAGCCTAGCAAACAATGGTGATCGCT
>chr4A_1793
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----------------------------------------------------------AAATGTTCAAATGCAGCAGTAG
TTCTAATTTAAATAAGTTCAAATATTACACTCCAACATTGTTGTCCCCT-------------------------------
--TTAACCGCCCACAAATGCTCAATCAGATCCTTCTTCAGTTGCTCGATAG-----------TGAAT-TTGTTGATGCAT
TTGAACAAACTCTTCAAATGT-GGCCGGATTCTGGTGAGGAAGTTCGATAGGATCACCCATGTTCTCAAATTCAAGACAT
---GTAGCAACATCCTCACCCTCATCCTCCATGATCATGTTGTGCATGATCACACAACATGTCATCACCTCC-ACAAGGT
C-TCCGGATCCCATTGTTTAGCAGGTTCATGAACAACTGCAAAACATGCGTGCAAAACTCCAAAAGCACTCTCAACATCC
TTTCTAGTTGTTTCTTGTCTTTGGGCAAAGTGAGACTTTTTCTGAAC-AATTGGGTTAGAGATGGTGTTCACAAAGGTAG
CCCACTGAGGATAGACACCATCAACCAAA---TAGTAGCCCATGTTGTACTCATG-CCCATTGACAGTATAGTGGCAAGG
AGGAGCTTTTCCTTCAGTCAGCCTAGCAAACAATGGTGATC---
>chr2D_1821
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----------------TTCAAATATTACGTCCCAACATTGTTTTCCCGT-------------------------------
--TTAACTGCCCATTGATACTCAATCAGATCTTCCTTCAGCTGCTCTTGAGTTGGTCGATGCCGAAT-TTGTTGATGCAT
TTGAATAAACTCTTCAAATGT-GGCCGGATTCTGGTCTGGAAGTTGGATATGATCACCCATTTTCTTAAATTCTATAGTT
---GCGGCAGCATTGTCACCCTCATCCTCGACGATCATGTTGTGCATGATCACACAACATGTCATCACCTCCCACAAGGT
C-TTCAGATCCCATTGTTTAGCAGGTCCACGAACAACTGCAAAACGGGCCTGCAAAACTCCAAATGCCCTCTCGACATCC
TTTCTAGCTCCTTCTTGTCTTTGGGAAAAGTGAGCTTTTTTCTGGCC-AACTGGGTTAGAGATGGTGTTGACAAAGGTAA
CTCATGGAGAATAGATACCGTCAGCCAGATAGTAGTAGCCCATGTTGTACTCATT-TCCATTGACAGTATAGTGGCAAGT
-GGAGCTTTTCCTTCAGTCAGACTTGCAAACAATGGCGATCGCT
>chr5D_1824
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-------------------AAATGTTGCATCCCAACATTGTTGTCCCCT-------------------------------
--TTAACTGCCCACTGATTCTCAATCATATCTTCCTTCGGCTGCTCGTGAGTTGGTCGATGCTGAAT-TTTTTGATGCAT
TTGAATAAACTCTTTAAATGTTGGCCGGATTCTGGTCTGAAAGTTGGATAGGATCA---------------TCTAAAGTT
---GTGGCAGCATCGTCACCCTCATGCTTGACGATCATGTTGTGCATGATCACACAACATGTCATCACCTCCCACAAGGT
C-TTCGGATCGTATTGTTTAGCAGGTCCACGAACAACTGCAAAACGGGCCCGCAGAACTCCAAATGTCCTCTCGACATCC
TTTCTAGCTGCTTCTTGTCTTTGGGCAAAGTGAGCCTTTTTCTGACC-AACTGGGTTAGAGATGGTGCTGACAAAGGTAG
CCCATGGAGGATAGATACCGTT-ACTAGA---TAGTAGCCCATGTTGTACTCATG-TCCATTGACAGTATAGTGGCAAGG
AAGAGATTTTCCTTTAGTCAGCCTCGCAAACAACGGTGATCG--
>chr5D_1844
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---------------------------------------GTTGTCGCCT-------------------------------
--TTAACCGCACATAGATGCTCAATAAAATATTTCTTCAATTGCTCATGAGTTGCTCGATGCCGAAT-TTTTTGATCCAT
ATGAACAAACTCATCAAATGT-GGCCAAATTCTGCTCTGGAAATTCGATAGGATCACTCATATTCTTAAATTCAACAGCT
---ACGGTAGCATATTCACCCTCATCCTCCACGATCATTTTGTGCATGATCACAAAACATGTCATCACCTCCGACAAGGT
C-TTTGGGTCCCATTGTTTAGGAGGTCCACGACCAATTGCAAAACGTGCCTGCAGAACTCCAAATGCCCTCTCAACATCT
TTTCTAGCTGCTTCTTGT-TTTGGGCAAAGTGAGACTTTTTCTGACC-AAGTGGGTCAGATATGGTCTTGACAAAGGTAG
CCCACGGAGGATAGATACCATCAACCAAA---TAGTAGCCCATGTTGTATTCATG-CCCATTGACAAAATAGTTGCAAGG
AGGAGCTTTCCCTTCAGTCAGCCTATCAAACAATGGTGATC---
>chr5D_1845
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----------------------------------------TTGTCCCCT-------------------------------
--TTGACCGCCCACATATGCTCAATCAGATTTTCCTTGAGCTTCTCGTGAGTTGGTCGATGCCAAAT-TTATTGATGCAT
TTAAATAAACTATTCAAACGT-GACTAGCTTTTGGTCTAGAAGTTCGGTAAGATCA-CCATGTTTTCAAATTCTAGAGCT
---GTGACAGCATCCTCATCATCATCCTCGAAGATCATGTTGTGCATGATCACACAACATGTCATCACCTCCCACAAGGT
C-TCTGGATCCCATAGTTTAGCAGGTCCATGAACAACCGCAAAACAGGCCTGCAAAACTTCAAATGCCCTCTCGACATCC
TTTCTAGCTGCTTCTTGTATTTGGGCAAAGTGAGACTTTCTCTGGCC-AACTGGGTTTGAGATGGTGCTGACAAAGGTAG
CCCACGAAGAATAGATACTATCAACCATA---TAGTAGCTCATGTTGTACTCATG-TCCATTGACAGTATAGTGGAAAGG
AGGAGCTTTTCCTTCAGTCAACCTCTCAAACAACGGTGATCGCT
>chr7D_1846
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-----------------------------------------TGTCCCCT-------------------------------
--TTAACCACCCAGAAATGCTCAATCAAATCTTTCTTCAATTTCTCATGAGTTGCTCGATGTCAAAT-TTGTTGATGCAT
TTGAACAAACTCATCAAATAT-GGACGGATTCTGCTCTAGAAGTTTGATAGGATCA-CCATGTTCTCAAATTCAAGAGCT
---ACGGTAGCATCCCCACCCTCATCCTCCAGGATCATGTTGTGCGTGATCACACAACATGCCATCACCTCCCACCAGGT
C-TTTGGATCCCATTGTTTAGAGGGTCTATGTACAACGACAAAACGTGCTTGCAGAACTTCAAATGCCCTCCCAACATCC
TTTCTAGCTGCTTCTTGTTTTTGGGTAAAGTGAGACTTTT-TTGGCC-AAGTGGGTCAGAGATGGTCTTGACAAAGGTAA
CCCACAAAGGATAGATACCGTCAACCAAA---TAGTAGCCCATGTTTTATTCGTG-CCCATTGATAGTATAGTGGAAAGG
AGGAGCTTTCCCTTCAGGCAGCCTAGCAAACAATGTTGATCGCT
>SNPs
--------S-SS----------------------------------------SS--------------------------
--S-----------------------------------S-------------------------------------S---
--------S-S--S--S-----------------------------------------S---------------------
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-----------------------------------------------------S--------------------------
-------------------------S------------------------------------------------------
------------------------S--S-----SSSS-------------------------------------------
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---------------------------------------------------------S----------------------
----------------------------------------------------------S---------------------
-----------------S-------SS--------------------------S-----SS--SSSSSSSSSSSSSSSSS
SSSSSSSSSSS--S---S-----------------------------------------SS-------------------
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---------------------------S----------------SS--------------------------S-------
-----------SSSSSS-SS-SS----------------------------------S------S---S------S-S--
----SS-----------------------------------------S------S-------------------------
-------------------------------------------------------------------------------S
SSSSSSSS------------------------------------------------------------------------
----------------------------------------------------------------S--------S------
--------------------------------------S-----------------------------------------
-----------------------S----------------------S---------------------------------
--------S------SS------------------------------------------------------SS-------
--------S----------------S-----------------S--------------------S---------------
------------------------------S-------------------------------------------S-----
---------------------S-------------S---------------------------------S---S------
-------S----------------------------S-----------SS---S---S-----SS-------SSSSS---
-----------------------------S----------------------S---S----------------S------
----------------------------------------------S---------------------------------
-------------------------------------------------S----------S-------------------
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--------------------------------------------S-----------------------------------
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-----------------------S--------S-----------------------------------------------
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>forward_3184
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--------------------------------------------GGAACGGGGGTACGATCATC----------------
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>reverse_4610
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-------------------------------------------------GGTTGCTCGATCCCGAATTTG----------
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--------------------------------------------
