Multiple sequence alignment - TraesCS3D01G394800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G394800 chr3D 100.000 3234 0 0 1 3234 510287638 510284405 0.000000e+00 5973
1 TraesCS3D01G394800 chr3D 80.463 778 97 28 2289 3029 510266109 510265350 7.890000e-151 544
2 TraesCS3D01G394800 chr3B 86.767 2849 242 65 314 3090 672384650 672381865 0.000000e+00 3048
3 TraesCS3D01G394800 chr3A 86.306 2848 244 70 308 3090 647147685 647144919 0.000000e+00 2964
4 TraesCS3D01G394800 chr3A 91.121 214 12 5 1 214 647147991 647147785 1.900000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G394800 chr3D 510284405 510287638 3233 True 5973.0 5973 100.0000 1 3234 1 chr3D.!!$R2 3233
1 TraesCS3D01G394800 chr3D 510265350 510266109 759 True 544.0 544 80.4630 2289 3029 1 chr3D.!!$R1 740
2 TraesCS3D01G394800 chr3B 672381865 672384650 2785 True 3048.0 3048 86.7670 314 3090 1 chr3B.!!$R1 2776
3 TraesCS3D01G394800 chr3A 647144919 647147991 3072 True 1623.5 2964 88.7135 1 3090 2 chr3A.!!$R1 3089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.170116 CTCTGCGACAGTGGAGACTC 59.830 60.0 0.00 0.0 32.52 3.36 F
295 296 0.246910 GGAGACTCAAGGGACCGTTC 59.753 60.0 4.53 0.0 0.00 3.95 F
349 378 0.389817 CAGTCCATCGCTCGTGGAAA 60.390 55.0 12.59 0.0 46.67 3.13 F
1844 1924 0.031449 GGCTCTCGCTCATCTGTACC 59.969 60.0 0.00 0.0 36.09 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1256 0.034960 CAGTCCTCGACCTCCTCAGA 60.035 60.0 0.00 0.00 32.18 3.27 R
1262 1329 0.250038 TAAGATCTGGCTGCCATCGC 60.250 55.0 23.64 13.73 30.82 4.58 R
2008 2088 0.687354 AGATGTTGCGAGGTGGAGTT 59.313 50.0 0.00 0.00 0.00 3.01 R
3115 3258 0.035439 CCGCCAAGCTCCCTAAAAGA 60.035 55.0 0.00 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.458189 CCTTTCCACGTGAGGACATATC 58.542 50.000 19.30 0.00 37.42 1.63
37 38 3.547014 CGTGAGGACATATCTGTGAGTCG 60.547 52.174 0.00 0.00 35.14 4.18
38 39 2.952310 TGAGGACATATCTGTGAGTCGG 59.048 50.000 0.00 0.00 35.14 4.79
50 51 1.451747 GAGTCGGCTCCGTCCTACT 60.452 63.158 5.50 4.25 40.74 2.57
51 52 1.438562 GAGTCGGCTCCGTCCTACTC 61.439 65.000 5.50 9.68 40.31 2.59
52 53 2.124403 TCGGCTCCGTCCTACTCC 60.124 66.667 8.28 0.00 40.74 3.85
63 64 0.710588 TCCTACTCCTTGCCCTCTCA 59.289 55.000 0.00 0.00 0.00 3.27
66 67 2.392662 CTACTCCTTGCCCTCTCATCA 58.607 52.381 0.00 0.00 0.00 3.07
67 68 1.202330 ACTCCTTGCCCTCTCATCAG 58.798 55.000 0.00 0.00 0.00 2.90
68 69 1.202330 CTCCTTGCCCTCTCATCAGT 58.798 55.000 0.00 0.00 0.00 3.41
69 70 1.138661 CTCCTTGCCCTCTCATCAGTC 59.861 57.143 0.00 0.00 0.00 3.51
70 71 0.907486 CCTTGCCCTCTCATCAGTCA 59.093 55.000 0.00 0.00 0.00 3.41
71 72 1.489649 CCTTGCCCTCTCATCAGTCAT 59.510 52.381 0.00 0.00 0.00 3.06
72 73 2.485124 CCTTGCCCTCTCATCAGTCATC 60.485 54.545 0.00 0.00 0.00 2.92
73 74 1.870064 TGCCCTCTCATCAGTCATCA 58.130 50.000 0.00 0.00 0.00 3.07
161 162 2.603473 TGGGGGACTCGTGTCAGG 60.603 66.667 18.45 0.00 44.61 3.86
225 226 4.764143 GCCAAGTGCCCCAAGTAT 57.236 55.556 0.00 0.00 0.00 2.12
226 227 3.894742 GCCAAGTGCCCCAAGTATA 57.105 52.632 0.00 0.00 0.00 1.47
227 228 1.680338 GCCAAGTGCCCCAAGTATAG 58.320 55.000 0.00 0.00 0.00 1.31
228 229 1.750682 GCCAAGTGCCCCAAGTATAGG 60.751 57.143 0.00 0.00 0.00 2.57
229 230 1.843851 CCAAGTGCCCCAAGTATAGGA 59.156 52.381 0.00 0.00 0.00 2.94
230 231 2.158755 CCAAGTGCCCCAAGTATAGGAG 60.159 54.545 0.00 0.00 0.00 3.69
231 232 2.771943 CAAGTGCCCCAAGTATAGGAGA 59.228 50.000 0.00 0.00 0.00 3.71
232 233 2.683768 AGTGCCCCAAGTATAGGAGAG 58.316 52.381 0.00 0.00 0.00 3.20
233 234 1.694696 GTGCCCCAAGTATAGGAGAGG 59.305 57.143 0.00 0.00 0.00 3.69
234 235 1.578703 TGCCCCAAGTATAGGAGAGGA 59.421 52.381 0.00 0.00 0.00 3.71
235 236 1.972075 GCCCCAAGTATAGGAGAGGAC 59.028 57.143 0.00 0.00 0.00 3.85
236 237 2.240279 CCCCAAGTATAGGAGAGGACG 58.760 57.143 0.00 0.00 0.00 4.79
237 238 2.240279 CCCAAGTATAGGAGAGGACGG 58.760 57.143 0.00 0.00 0.00 4.79
238 239 2.424523 CCCAAGTATAGGAGAGGACGGT 60.425 54.545 0.00 0.00 0.00 4.83
239 240 3.297736 CCAAGTATAGGAGAGGACGGTT 58.702 50.000 0.00 0.00 0.00 4.44
240 241 3.068307 CCAAGTATAGGAGAGGACGGTTG 59.932 52.174 0.00 0.00 0.00 3.77
241 242 2.308690 AGTATAGGAGAGGACGGTTGC 58.691 52.381 0.00 0.00 0.00 4.17
242 243 1.340568 GTATAGGAGAGGACGGTTGCC 59.659 57.143 0.00 0.00 0.00 4.52
243 244 0.325296 ATAGGAGAGGACGGTTGCCA 60.325 55.000 0.00 0.00 0.00 4.92
244 245 0.325296 TAGGAGAGGACGGTTGCCAT 60.325 55.000 0.00 0.00 0.00 4.40
245 246 1.201429 AGGAGAGGACGGTTGCCATT 61.201 55.000 0.00 0.00 0.00 3.16
246 247 0.322546 GGAGAGGACGGTTGCCATTT 60.323 55.000 0.00 0.00 0.00 2.32
247 248 0.804989 GAGAGGACGGTTGCCATTTG 59.195 55.000 0.00 0.00 0.00 2.32
248 249 1.212751 GAGGACGGTTGCCATTTGC 59.787 57.895 0.00 0.00 41.77 3.68
249 250 1.228552 AGGACGGTTGCCATTTGCT 60.229 52.632 0.00 0.00 42.00 3.91
283 284 0.170116 CTCTGCGACAGTGGAGACTC 59.830 60.000 0.00 0.00 32.52 3.36
291 292 0.610687 CAGTGGAGACTCAAGGGACC 59.389 60.000 4.53 0.00 0.00 4.46
294 295 0.471211 TGGAGACTCAAGGGACCGTT 60.471 55.000 4.53 0.00 0.00 4.44
295 296 0.246910 GGAGACTCAAGGGACCGTTC 59.753 60.000 4.53 0.00 0.00 3.95
296 297 0.246910 GAGACTCAAGGGACCGTTCC 59.753 60.000 0.00 0.00 41.95 3.62
304 305 2.993264 GGACCGTTCCCGACCTCA 60.993 66.667 0.00 0.00 35.57 3.86
305 306 2.356780 GGACCGTTCCCGACCTCAT 61.357 63.158 0.00 0.00 35.57 2.90
306 307 1.595357 GACCGTTCCCGACCTCATT 59.405 57.895 0.00 0.00 35.63 2.57
331 360 2.750637 GAGACTCCGGCGACTCCA 60.751 66.667 9.30 0.00 34.01 3.86
332 361 2.752238 AGACTCCGGCGACTCCAG 60.752 66.667 9.30 0.00 34.01 3.86
333 362 3.063084 GACTCCGGCGACTCCAGT 61.063 66.667 9.30 1.43 34.01 4.00
335 364 3.827898 CTCCGGCGACTCCAGTCC 61.828 72.222 9.30 0.00 41.86 3.85
336 365 4.671590 TCCGGCGACTCCAGTCCA 62.672 66.667 9.30 0.00 41.86 4.02
341 370 3.201494 CGACTCCAGTCCATCGCT 58.799 61.111 1.01 0.00 41.86 4.93
343 372 1.064946 GACTCCAGTCCATCGCTCG 59.935 63.158 0.00 0.00 39.07 5.03
344 373 1.658686 GACTCCAGTCCATCGCTCGT 61.659 60.000 0.00 0.00 39.07 4.18
346 375 2.202797 CCAGTCCATCGCTCGTGG 60.203 66.667 5.09 5.09 38.11 4.94
347 376 2.710902 CCAGTCCATCGCTCGTGGA 61.711 63.158 8.68 8.68 43.26 4.02
348 377 1.215382 CAGTCCATCGCTCGTGGAA 59.785 57.895 12.59 0.09 46.67 3.53
349 378 0.389817 CAGTCCATCGCTCGTGGAAA 60.390 55.000 12.59 0.00 46.67 3.13
390 421 1.188863 GTGGCTTGCTCCAATCCAAT 58.811 50.000 2.45 0.00 40.57 3.16
392 423 2.027837 GTGGCTTGCTCCAATCCAATTT 60.028 45.455 2.45 0.00 40.57 1.82
395 426 2.234414 GCTTGCTCCAATCCAATTTCCA 59.766 45.455 0.00 0.00 0.00 3.53
445 476 1.053264 CCCCTCTCTGATGGTCCCAG 61.053 65.000 0.00 0.00 0.00 4.45
484 518 1.274728 TCTTGAGTGAGGAGCTGAAGC 59.725 52.381 0.00 0.00 42.49 3.86
499 533 4.449870 CTGAAGCGTATTTGATCAGCTC 57.550 45.455 6.84 2.78 37.15 4.09
500 534 2.860136 TGAAGCGTATTTGATCAGCTCG 59.140 45.455 6.84 6.99 37.15 5.03
502 553 2.736978 AGCGTATTTGATCAGCTCGAG 58.263 47.619 8.45 8.45 31.94 4.04
510 561 4.462508 TTGATCAGCTCGAGTTTGAGAT 57.537 40.909 20.89 12.32 38.28 2.75
511 562 5.582689 TTGATCAGCTCGAGTTTGAGATA 57.417 39.130 20.89 10.94 38.28 1.98
516 567 5.403246 TCAGCTCGAGTTTGAGATACTTTC 58.597 41.667 15.13 0.00 38.28 2.62
526 577 8.401490 AGTTTGAGATACTTTCAGCAATTCTT 57.599 30.769 0.00 0.00 0.00 2.52
534 585 6.959639 ACTTTCAGCAATTCTTGGTTTCTA 57.040 33.333 0.00 0.00 39.79 2.10
535 586 6.739112 ACTTTCAGCAATTCTTGGTTTCTAC 58.261 36.000 0.00 0.00 39.79 2.59
540 591 6.016276 TCAGCAATTCTTGGTTTCTACTTTCC 60.016 38.462 0.00 0.00 39.79 3.13
546 597 1.348696 TGGTTTCTACTTTCCGGGGAC 59.651 52.381 0.00 0.00 0.00 4.46
561 612 1.133668 GGGGACTGGAATTCTCATGGG 60.134 57.143 5.23 0.00 0.00 4.00
562 613 1.685148 GGACTGGAATTCTCATGGGC 58.315 55.000 5.23 0.00 0.00 5.36
564 615 1.002069 ACTGGAATTCTCATGGGCCA 58.998 50.000 9.61 9.61 0.00 5.36
567 618 0.756815 GGAATTCTCATGGGCCACCC 60.757 60.000 9.28 0.00 45.71 4.61
576 627 4.657952 GGGCCACCCACATAACTC 57.342 61.111 4.39 0.00 44.65 3.01
577 628 1.688811 GGGCCACCCACATAACTCA 59.311 57.895 4.39 0.00 44.65 3.41
578 629 0.394352 GGGCCACCCACATAACTCAG 60.394 60.000 4.39 0.00 44.65 3.35
581 632 2.554344 GGCCACCCACATAACTCAGAAA 60.554 50.000 0.00 0.00 0.00 2.52
582 633 3.356290 GCCACCCACATAACTCAGAAAT 58.644 45.455 0.00 0.00 0.00 2.17
583 634 3.763897 GCCACCCACATAACTCAGAAATT 59.236 43.478 0.00 0.00 0.00 1.82
585 636 5.622233 GCCACCCACATAACTCAGAAATTTC 60.622 44.000 10.33 10.33 0.00 2.17
586 637 5.105756 CCACCCACATAACTCAGAAATTTCC 60.106 44.000 14.61 0.00 0.00 3.13
587 638 5.476599 CACCCACATAACTCAGAAATTTCCA 59.523 40.000 14.61 1.08 0.00 3.53
588 639 6.153340 CACCCACATAACTCAGAAATTTCCAT 59.847 38.462 14.61 0.00 0.00 3.41
589 640 6.153340 ACCCACATAACTCAGAAATTTCCATG 59.847 38.462 14.61 7.74 0.00 3.66
590 641 6.153340 CCCACATAACTCAGAAATTTCCATGT 59.847 38.462 14.61 11.04 0.00 3.21
591 642 7.309990 CCCACATAACTCAGAAATTTCCATGTT 60.310 37.037 14.61 16.70 0.00 2.71
592 643 8.739039 CCACATAACTCAGAAATTTCCATGTTA 58.261 33.333 14.61 18.02 0.00 2.41
598 649 8.641498 ACTCAGAAATTTCCATGTTAACATCT 57.359 30.769 18.25 8.08 33.61 2.90
599 650 9.082313 ACTCAGAAATTTCCATGTTAACATCTT 57.918 29.630 18.25 5.42 33.61 2.40
600 651 9.565213 CTCAGAAATTTCCATGTTAACATCTTC 57.435 33.333 18.25 12.82 33.61 2.87
609 660 9.527157 TTCCATGTTAACATCTTCTTTTATGGA 57.473 29.630 18.25 15.53 38.72 3.41
611 662 8.190784 CCATGTTAACATCTTCTTTTATGGACC 58.809 37.037 18.25 0.00 34.70 4.46
612 663 8.960591 CATGTTAACATCTTCTTTTATGGACCT 58.039 33.333 18.25 0.00 33.61 3.85
613 664 8.561738 TGTTAACATCTTCTTTTATGGACCTC 57.438 34.615 3.59 0.00 0.00 3.85
614 665 8.160765 TGTTAACATCTTCTTTTATGGACCTCA 58.839 33.333 3.59 0.00 0.00 3.86
638 689 2.290514 TGATGTTCTTCTGGGCAGGAAG 60.291 50.000 10.96 10.96 40.85 3.46
653 704 4.522789 GGCAGGAAGTTCTTACAATTTCCA 59.477 41.667 10.27 0.00 39.76 3.53
654 705 5.335976 GGCAGGAAGTTCTTACAATTTCCAG 60.336 44.000 10.27 4.61 39.76 3.86
655 706 5.703876 CAGGAAGTTCTTACAATTTCCAGC 58.296 41.667 10.27 0.00 39.76 4.85
699 751 6.121590 ACACATGGATGTAATTCTGTGCATA 58.878 36.000 0.00 0.00 39.39 3.14
720 772 9.023962 TGCATATTTTCCTTCAACTCACTATTT 57.976 29.630 0.00 0.00 0.00 1.40
754 814 5.019785 AGTAACTTCAGAAACACGGAGTT 57.980 39.130 0.00 0.00 41.61 3.01
770 830 9.840427 AACACGGAGTTCTCATTAATTTATTTG 57.160 29.630 2.24 0.00 41.61 2.32
904 964 0.682852 AAGTACTACTTGCGGTGCCA 59.317 50.000 0.00 0.00 37.00 4.92
932 992 4.861462 GGTACTACAAAAACTCGAGTAGGC 59.139 45.833 20.39 8.48 38.54 3.93
1131 1195 1.208165 ATCCACCTCCACCTGGAACC 61.208 60.000 0.00 0.00 44.91 3.62
1164 1228 2.617532 GCAGAGAAGTTCCAGGAATGCT 60.618 50.000 13.80 8.14 0.00 3.79
1168 1232 5.707298 CAGAGAAGTTCCAGGAATGCTAAAA 59.293 40.000 4.80 0.00 0.00 1.52
1177 1241 3.010420 AGGAATGCTAAAAAGGCTCGTC 58.990 45.455 0.00 0.00 0.00 4.20
1187 1254 0.670546 AAGGCTCGTCGTGTTCATGG 60.671 55.000 0.00 0.00 0.00 3.66
1189 1256 1.738099 GCTCGTCGTGTTCATGGCT 60.738 57.895 0.00 0.00 0.00 4.75
1201 1268 1.039785 TCATGGCTCTGAGGAGGTCG 61.040 60.000 6.83 0.00 39.80 4.79
1290 1357 2.411069 CAGCCAGATCTTATCGCATTCG 59.589 50.000 0.00 0.00 0.00 3.34
1314 1381 6.265577 GTGCATTCTTGTGAGTACAGTTTTT 58.734 36.000 0.00 0.00 38.23 1.94
1315 1382 7.414436 GTGCATTCTTGTGAGTACAGTTTTTA 58.586 34.615 0.00 0.00 38.23 1.52
1369 1437 4.640771 AGAACAGAGGCAGGTTTTGATA 57.359 40.909 0.00 0.00 0.00 2.15
1413 1486 1.271934 CTACAGGGCATCAGATCTCCG 59.728 57.143 0.00 0.00 0.00 4.63
1444 1517 7.039011 TGAGAAGTATGTTGGAAGAAGCTAGAA 60.039 37.037 0.00 0.00 0.00 2.10
1446 1519 8.325046 AGAAGTATGTTGGAAGAAGCTAGAATT 58.675 33.333 0.00 0.00 0.00 2.17
1450 1523 6.560253 TGTTGGAAGAAGCTAGAATTGAAC 57.440 37.500 0.00 0.00 0.00 3.18
1488 1561 0.988063 TGATTTCCGGTGTCCCATCA 59.012 50.000 0.00 0.00 0.00 3.07
1542 1615 3.260475 TCTTCACGGTATGAATGTGGG 57.740 47.619 0.00 0.00 46.37 4.61
1547 1620 1.016627 CGGTATGAATGTGGGCTGTG 58.983 55.000 0.00 0.00 0.00 3.66
1599 1677 7.716998 TCAGAGTTTTCAGTATGCTCTTCTTTT 59.283 33.333 0.00 0.00 34.68 2.27
1602 1680 8.910351 AGTTTTCAGTATGCTCTTCTTTTACT 57.090 30.769 0.00 0.00 34.76 2.24
1609 1687 9.593134 CAGTATGCTCTTCTTTTACTACAAGAT 57.407 33.333 0.00 0.00 30.26 2.40
1628 1706 6.820656 ACAAGATATAGCTTGACAGAACCTTG 59.179 38.462 31.72 7.00 46.31 3.61
1629 1707 6.552445 AGATATAGCTTGACAGAACCTTGT 57.448 37.500 0.00 0.00 0.00 3.16
1630 1708 6.578023 AGATATAGCTTGACAGAACCTTGTC 58.422 40.000 0.00 0.00 46.02 3.18
1643 1721 7.875971 ACAGAACCTTGTCATCTATTTTGTTC 58.124 34.615 0.00 0.00 0.00 3.18
1666 1746 0.538057 TGGTGAAGCTTTGAGCAGGG 60.538 55.000 0.00 0.00 45.56 4.45
1679 1759 2.235650 TGAGCAGGGTGAGATGAAGAAG 59.764 50.000 0.00 0.00 0.00 2.85
1844 1924 0.031449 GGCTCTCGCTCATCTGTACC 59.969 60.000 0.00 0.00 36.09 3.34
1854 1934 3.670895 GCTCATCTGTACCCGTATGATCG 60.671 52.174 0.00 0.00 0.00 3.69
1855 1935 3.483421 TCATCTGTACCCGTATGATCGT 58.517 45.455 0.00 0.00 0.00 3.73
1969 2049 4.081365 TGTTGAAGTGGACACAGTGAGTTA 60.081 41.667 7.81 0.00 0.00 2.24
2058 2138 3.659899 CGAATTACTCGTCTCGCTACATG 59.340 47.826 0.00 0.00 42.89 3.21
2059 2139 4.599047 GAATTACTCGTCTCGCTACATGT 58.401 43.478 2.69 2.69 0.00 3.21
2060 2140 4.634184 ATTACTCGTCTCGCTACATGTT 57.366 40.909 2.30 0.00 0.00 2.71
2061 2141 5.746307 ATTACTCGTCTCGCTACATGTTA 57.254 39.130 2.30 0.00 0.00 2.41
2062 2142 5.746307 TTACTCGTCTCGCTACATGTTAT 57.254 39.130 2.30 0.00 0.00 1.89
2063 2143 3.953766 ACTCGTCTCGCTACATGTTATG 58.046 45.455 2.30 0.00 0.00 1.90
2064 2144 3.377485 ACTCGTCTCGCTACATGTTATGT 59.623 43.478 2.30 0.00 46.92 2.29
2065 2145 3.948851 TCGTCTCGCTACATGTTATGTC 58.051 45.455 2.30 0.00 43.67 3.06
2066 2146 3.626217 TCGTCTCGCTACATGTTATGTCT 59.374 43.478 2.30 0.00 43.67 3.41
2067 2147 4.812626 TCGTCTCGCTACATGTTATGTCTA 59.187 41.667 2.30 0.00 43.67 2.59
2068 2148 5.469084 TCGTCTCGCTACATGTTATGTCTAT 59.531 40.000 2.30 0.00 43.67 1.98
2069 2149 6.647895 TCGTCTCGCTACATGTTATGTCTATA 59.352 38.462 2.30 0.00 43.67 1.31
2070 2150 7.172019 TCGTCTCGCTACATGTTATGTCTATAA 59.828 37.037 2.30 0.00 43.67 0.98
2071 2151 7.963465 CGTCTCGCTACATGTTATGTCTATAAT 59.037 37.037 2.30 0.00 43.67 1.28
2072 2152 9.279904 GTCTCGCTACATGTTATGTCTATAATC 57.720 37.037 2.30 0.00 43.67 1.75
2073 2153 8.175716 TCTCGCTACATGTTATGTCTATAATCG 58.824 37.037 2.30 0.00 43.67 3.34
2074 2154 7.813645 TCGCTACATGTTATGTCTATAATCGT 58.186 34.615 2.30 0.00 43.67 3.73
2075 2155 7.961283 TCGCTACATGTTATGTCTATAATCGTC 59.039 37.037 2.30 0.00 43.67 4.20
2076 2156 7.963465 CGCTACATGTTATGTCTATAATCGTCT 59.037 37.037 2.30 0.00 43.67 4.18
2077 2157 9.279904 GCTACATGTTATGTCTATAATCGTCTC 57.720 37.037 2.30 0.00 43.67 3.36
2096 2176 8.937634 TCGTCTCGCTATATGTTATGTCTATA 57.062 34.615 0.00 0.00 0.00 1.31
2150 2230 6.127925 TGCTTATACCTGCTGTCAGAAAATTG 60.128 38.462 3.32 0.00 42.95 2.32
2165 2248 6.430925 TCAGAAAATTGTATAGCTGCACAACT 59.569 34.615 14.86 4.18 37.47 3.16
2194 2277 5.812642 GTCATGGTTCATACTCATCGTTCTT 59.187 40.000 0.00 0.00 0.00 2.52
2265 2348 6.943146 GGAGGAAAAGAAGGTTTATCTTCAGT 59.057 38.462 5.61 0.00 44.01 3.41
2396 2479 1.986575 GCAAGGGCATCGAGTTGCTC 61.987 60.000 10.61 6.86 43.74 4.26
2422 2505 2.686235 CCATTTCTCGGCATGCAAAAA 58.314 42.857 21.36 13.36 0.00 1.94
2565 2650 6.669125 TTGTTGGTCAGGATCATTTCATTT 57.331 33.333 0.00 0.00 0.00 2.32
2581 2666 9.515020 TCATTTCATTTAGACACACAAGTTTTC 57.485 29.630 0.00 0.00 0.00 2.29
2701 2800 5.485209 AAACTGAAGGTAGGTGGACTTAG 57.515 43.478 0.00 0.00 0.00 2.18
2703 2802 1.822990 TGAAGGTAGGTGGACTTAGCG 59.177 52.381 0.00 0.00 32.20 4.26
2717 2835 3.326747 ACTTAGCGGACAGACAAACATC 58.673 45.455 0.00 0.00 0.00 3.06
2718 2836 3.244078 ACTTAGCGGACAGACAAACATCA 60.244 43.478 0.00 0.00 0.00 3.07
2748 2866 7.560796 AAAATTCAGAAGACTAGGGAGAAGA 57.439 36.000 0.00 0.00 0.00 2.87
2750 2868 6.790232 ATTCAGAAGACTAGGGAGAAGAAG 57.210 41.667 0.00 0.00 0.00 2.85
2751 2869 4.020543 TCAGAAGACTAGGGAGAAGAAGC 58.979 47.826 0.00 0.00 0.00 3.86
2752 2870 4.023291 CAGAAGACTAGGGAGAAGAAGCT 58.977 47.826 0.00 0.00 0.00 3.74
2771 2900 6.760770 AGAAGCTAACACATCAGATTTCTAGC 59.239 38.462 0.00 0.00 0.00 3.42
2781 2910 3.457380 TCAGATTTCTAGCTGCCTTCCAT 59.543 43.478 0.00 0.00 37.70 3.41
2787 2916 4.307032 TCTAGCTGCCTTCCATCTTTTT 57.693 40.909 0.00 0.00 0.00 1.94
2788 2917 4.265073 TCTAGCTGCCTTCCATCTTTTTC 58.735 43.478 0.00 0.00 0.00 2.29
2803 2932 3.053991 TCTTTTTCTCACTCACCCACCAA 60.054 43.478 0.00 0.00 0.00 3.67
2806 2935 2.859165 TCTCACTCACCCACCAAATC 57.141 50.000 0.00 0.00 0.00 2.17
2809 2938 0.960364 CACTCACCCACCAAATCCCG 60.960 60.000 0.00 0.00 0.00 5.14
2812 2941 1.905843 CACCCACCAAATCCCGCAA 60.906 57.895 0.00 0.00 0.00 4.85
2815 2944 0.037419 CCCACCAAATCCCGCAAAAG 60.037 55.000 0.00 0.00 0.00 2.27
2843 2985 5.250200 TGACCGCAATAGGAAATTTACTGT 58.750 37.500 13.51 3.16 34.73 3.55
2844 2986 5.353123 TGACCGCAATAGGAAATTTACTGTC 59.647 40.000 13.51 10.65 34.73 3.51
2856 2998 2.456942 TTACTGTCGTACGCATACCG 57.543 50.000 11.24 2.90 44.21 4.02
2893 3035 8.668353 TCAGCATTTCTGTTATATTCACTTCAC 58.332 33.333 0.00 0.00 43.32 3.18
2894 3036 7.637519 CAGCATTTCTGTTATATTCACTTCACG 59.362 37.037 0.00 0.00 38.02 4.35
2938 3080 8.535335 TGTTGCAGGCATTTTAAGGATAAAATA 58.465 29.630 6.31 0.00 45.50 1.40
2939 3081 9.546428 GTTGCAGGCATTTTAAGGATAAAATAT 57.454 29.630 6.31 0.00 45.50 1.28
3004 3147 4.160626 GTGTGTAAGGTCCTAGAGAGCAAT 59.839 45.833 11.39 4.52 45.87 3.56
3006 3149 2.998316 AAGGTCCTAGAGAGCAATGC 57.002 50.000 0.00 0.00 45.87 3.56
3012 3155 3.373439 GTCCTAGAGAGCAATGCAACAAG 59.627 47.826 8.35 0.00 0.00 3.16
3029 3172 5.782047 CAACAAGCACATCCATCCTAAAAA 58.218 37.500 0.00 0.00 0.00 1.94
3030 3173 6.400568 CAACAAGCACATCCATCCTAAAAAT 58.599 36.000 0.00 0.00 0.00 1.82
3034 3177 4.891756 AGCACATCCATCCTAAAAATGAGG 59.108 41.667 0.00 0.00 35.17 3.86
3039 3182 7.761249 CACATCCATCCTAAAAATGAGGAAAAC 59.239 37.037 0.00 0.00 46.19 2.43
3040 3183 7.454380 ACATCCATCCTAAAAATGAGGAAAACA 59.546 33.333 0.00 0.00 46.19 2.83
3044 3187 8.480501 CCATCCTAAAAATGAGGAAAACATCAT 58.519 33.333 0.00 0.00 46.19 2.45
3049 3192 9.362539 CTAAAAATGAGGAAAACATCATCCTTG 57.637 33.333 0.00 0.00 46.04 3.61
3051 3194 7.729124 AAATGAGGAAAACATCATCCTTGAT 57.271 32.000 0.00 0.00 46.04 2.57
3060 3203 3.497103 ATCATCCTTGATGCCGAATGA 57.503 42.857 0.00 0.00 41.12 2.57
3062 3205 3.619419 TCATCCTTGATGCCGAATGAAA 58.381 40.909 0.00 0.00 39.63 2.69
3067 3210 3.504863 CTTGATGCCGAATGAAACTTGG 58.495 45.455 0.00 0.00 0.00 3.61
3078 3221 6.038161 CCGAATGAAACTTGGCATATAGTTCA 59.962 38.462 3.69 4.87 33.66 3.18
3090 3233 9.674068 TTGGCATATAGTTCAACAGTAATAACA 57.326 29.630 0.00 0.00 0.00 2.41
3091 3234 9.104965 TGGCATATAGTTCAACAGTAATAACAC 57.895 33.333 0.00 0.00 0.00 3.32
3092 3235 9.104965 GGCATATAGTTCAACAGTAATAACACA 57.895 33.333 0.00 0.00 0.00 3.72
3096 3239 6.935741 AGTTCAACAGTAATAACACAAGCA 57.064 33.333 0.00 0.00 0.00 3.91
3097 3240 6.725246 AGTTCAACAGTAATAACACAAGCAC 58.275 36.000 0.00 0.00 0.00 4.40
3098 3241 6.317642 AGTTCAACAGTAATAACACAAGCACA 59.682 34.615 0.00 0.00 0.00 4.57
3099 3242 6.299023 TCAACAGTAATAACACAAGCACAG 57.701 37.500 0.00 0.00 0.00 3.66
3100 3243 6.052360 TCAACAGTAATAACACAAGCACAGA 58.948 36.000 0.00 0.00 0.00 3.41
3101 3244 6.710295 TCAACAGTAATAACACAAGCACAGAT 59.290 34.615 0.00 0.00 0.00 2.90
3102 3245 6.727824 ACAGTAATAACACAAGCACAGATC 57.272 37.500 0.00 0.00 0.00 2.75
3103 3246 6.467677 ACAGTAATAACACAAGCACAGATCT 58.532 36.000 0.00 0.00 0.00 2.75
3104 3247 6.936900 ACAGTAATAACACAAGCACAGATCTT 59.063 34.615 0.00 0.00 0.00 2.40
3105 3248 7.095060 ACAGTAATAACACAAGCACAGATCTTG 60.095 37.037 0.00 0.00 44.71 3.02
3113 3256 4.470462 CAAGCACAGATCTTGTTTACTGC 58.530 43.478 0.00 0.00 38.16 4.40
3114 3257 4.013267 AGCACAGATCTTGTTTACTGCT 57.987 40.909 0.00 0.00 38.16 4.24
3115 3258 4.392940 AGCACAGATCTTGTTTACTGCTT 58.607 39.130 0.00 0.00 38.16 3.91
3116 3259 4.453819 AGCACAGATCTTGTTTACTGCTTC 59.546 41.667 0.00 0.00 38.16 3.86
3117 3260 4.453819 GCACAGATCTTGTTTACTGCTTCT 59.546 41.667 0.00 0.00 38.16 2.85
3118 3261 5.049129 GCACAGATCTTGTTTACTGCTTCTT 60.049 40.000 0.00 0.00 38.16 2.52
3119 3262 6.514048 GCACAGATCTTGTTTACTGCTTCTTT 60.514 38.462 0.00 0.00 38.16 2.52
3120 3263 7.420800 CACAGATCTTGTTTACTGCTTCTTTT 58.579 34.615 0.00 0.00 38.16 2.27
3121 3264 8.559536 CACAGATCTTGTTTACTGCTTCTTTTA 58.440 33.333 0.00 0.00 38.16 1.52
3122 3265 8.778358 ACAGATCTTGTTTACTGCTTCTTTTAG 58.222 33.333 0.00 0.00 36.31 1.85
3123 3266 8.233190 CAGATCTTGTTTACTGCTTCTTTTAGG 58.767 37.037 0.00 0.00 0.00 2.69
3124 3267 6.877611 TCTTGTTTACTGCTTCTTTTAGGG 57.122 37.500 0.00 0.00 0.00 3.53
3125 3268 6.597562 TCTTGTTTACTGCTTCTTTTAGGGA 58.402 36.000 0.00 0.00 0.00 4.20
3126 3269 6.710744 TCTTGTTTACTGCTTCTTTTAGGGAG 59.289 38.462 0.00 0.00 0.00 4.30
3127 3270 4.760204 TGTTTACTGCTTCTTTTAGGGAGC 59.240 41.667 0.00 0.00 0.00 4.70
3128 3271 4.910458 TTACTGCTTCTTTTAGGGAGCT 57.090 40.909 0.00 0.00 0.00 4.09
3129 3272 3.797559 ACTGCTTCTTTTAGGGAGCTT 57.202 42.857 0.00 0.00 0.00 3.74
3130 3273 3.416156 ACTGCTTCTTTTAGGGAGCTTG 58.584 45.455 0.00 0.00 0.00 4.01
3131 3274 2.751806 CTGCTTCTTTTAGGGAGCTTGG 59.248 50.000 0.00 0.00 0.00 3.61
3132 3275 1.474478 GCTTCTTTTAGGGAGCTTGGC 59.526 52.381 0.00 0.00 0.00 4.52
3133 3276 1.740025 CTTCTTTTAGGGAGCTTGGCG 59.260 52.381 0.00 0.00 0.00 5.69
3134 3277 0.035439 TCTTTTAGGGAGCTTGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
3135 3278 0.035439 CTTTTAGGGAGCTTGGCGGA 60.035 55.000 0.00 0.00 0.00 5.54
3136 3279 0.035439 TTTTAGGGAGCTTGGCGGAG 60.035 55.000 0.00 0.00 0.00 4.63
3137 3280 1.198759 TTTAGGGAGCTTGGCGGAGT 61.199 55.000 0.00 0.00 0.00 3.85
3138 3281 1.198759 TTAGGGAGCTTGGCGGAGTT 61.199 55.000 0.00 0.00 0.00 3.01
3139 3282 1.899437 TAGGGAGCTTGGCGGAGTTG 61.899 60.000 0.00 0.00 0.00 3.16
3140 3283 2.347490 GGAGCTTGGCGGAGTTGA 59.653 61.111 0.00 0.00 0.00 3.18
3141 3284 1.743252 GGAGCTTGGCGGAGTTGAG 60.743 63.158 0.00 0.00 0.00 3.02
3142 3285 1.004440 GAGCTTGGCGGAGTTGAGT 60.004 57.895 0.00 0.00 0.00 3.41
3143 3286 0.246635 GAGCTTGGCGGAGTTGAGTA 59.753 55.000 0.00 0.00 0.00 2.59
3144 3287 0.685097 AGCTTGGCGGAGTTGAGTAA 59.315 50.000 0.00 0.00 0.00 2.24
3145 3288 0.796927 GCTTGGCGGAGTTGAGTAAC 59.203 55.000 0.00 0.00 37.06 2.50
3147 3290 2.353406 GCTTGGCGGAGTTGAGTAACTA 60.353 50.000 0.00 0.00 46.79 2.24
3148 3291 3.251571 CTTGGCGGAGTTGAGTAACTAC 58.748 50.000 0.00 0.00 46.79 2.73
3149 3292 2.241160 TGGCGGAGTTGAGTAACTACA 58.759 47.619 3.57 0.00 46.27 2.74
3150 3293 2.230508 TGGCGGAGTTGAGTAACTACAG 59.769 50.000 3.57 0.00 46.27 2.74
3151 3294 2.230750 GGCGGAGTTGAGTAACTACAGT 59.769 50.000 3.57 0.00 46.27 3.55
3152 3295 3.305881 GGCGGAGTTGAGTAACTACAGTT 60.306 47.826 3.57 0.00 46.27 3.16
3153 3296 3.673809 GCGGAGTTGAGTAACTACAGTTG 59.326 47.826 4.86 0.00 46.27 3.16
3154 3297 4.795308 GCGGAGTTGAGTAACTACAGTTGT 60.795 45.833 4.86 0.00 46.27 3.32
3155 3298 4.680110 CGGAGTTGAGTAACTACAGTTGTG 59.320 45.833 4.86 0.00 46.27 3.33
3156 3299 5.506815 CGGAGTTGAGTAACTACAGTTGTGA 60.507 44.000 4.86 0.00 46.27 3.58
3157 3300 6.278363 GGAGTTGAGTAACTACAGTTGTGAA 58.722 40.000 4.86 0.00 46.79 3.18
3158 3301 6.929606 GGAGTTGAGTAACTACAGTTGTGAAT 59.070 38.462 4.86 0.00 46.79 2.57
3159 3302 7.116519 GGAGTTGAGTAACTACAGTTGTGAATC 59.883 40.741 4.86 0.00 46.79 2.52
3160 3303 7.497595 AGTTGAGTAACTACAGTTGTGAATCA 58.502 34.615 4.86 0.00 45.07 2.57
3161 3304 8.150945 AGTTGAGTAACTACAGTTGTGAATCAT 58.849 33.333 3.83 0.00 45.07 2.45
3162 3305 8.436200 GTTGAGTAACTACAGTTGTGAATCATC 58.564 37.037 3.83 0.64 38.90 2.92
3163 3306 7.896811 TGAGTAACTACAGTTGTGAATCATCT 58.103 34.615 4.86 0.00 38.90 2.90
3164 3307 9.020731 TGAGTAACTACAGTTGTGAATCATCTA 57.979 33.333 4.86 0.00 38.90 1.98
3165 3308 9.509855 GAGTAACTACAGTTGTGAATCATCTAG 57.490 37.037 4.86 0.00 38.90 2.43
3166 3309 9.244292 AGTAACTACAGTTGTGAATCATCTAGA 57.756 33.333 4.86 0.00 38.90 2.43
3168 3311 8.939201 AACTACAGTTGTGAATCATCTAGATG 57.061 34.615 24.32 24.32 35.34 2.90
3169 3312 8.753133 AACTACAGTTGTGAATCATCTAGATGA 58.247 33.333 32.16 32.16 43.08 2.92
3182 3325 7.715266 TCATCTAGATGATTATGTAGCAGCT 57.285 36.000 27.93 0.00 42.42 4.24
3183 3326 8.814038 TCATCTAGATGATTATGTAGCAGCTA 57.186 34.615 27.93 0.00 42.42 3.32
3184 3327 8.681806 TCATCTAGATGATTATGTAGCAGCTAC 58.318 37.037 27.93 23.74 42.42 3.58
3185 3328 8.465201 CATCTAGATGATTATGTAGCAGCTACA 58.535 37.037 32.60 32.60 44.14 2.74
3186 3329 9.029368 ATCTAGATGATTATGTAGCAGCTACAA 57.971 33.333 33.75 21.60 40.07 2.41
3196 3339 5.401550 TGTAGCAGCTACAAATGAAATTGC 58.598 37.500 29.54 2.13 42.94 3.56
3197 3340 4.524316 AGCAGCTACAAATGAAATTGCA 57.476 36.364 0.00 0.00 36.10 4.08
3198 3341 4.491676 AGCAGCTACAAATGAAATTGCAG 58.508 39.130 0.00 0.00 36.10 4.41
3199 3342 4.219070 AGCAGCTACAAATGAAATTGCAGA 59.781 37.500 0.00 0.00 36.10 4.26
3200 3343 5.105473 AGCAGCTACAAATGAAATTGCAGAT 60.105 36.000 0.00 0.00 36.10 2.90
3201 3344 5.579511 GCAGCTACAAATGAAATTGCAGATT 59.420 36.000 0.00 0.00 36.10 2.40
3202 3345 6.091713 GCAGCTACAAATGAAATTGCAGATTT 59.908 34.615 6.57 6.57 36.10 2.17
3203 3346 7.453034 CAGCTACAAATGAAATTGCAGATTTG 58.547 34.615 9.93 9.93 40.24 2.32
3204 3347 7.329962 CAGCTACAAATGAAATTGCAGATTTGA 59.670 33.333 16.22 8.94 37.80 2.69
3205 3348 7.544566 AGCTACAAATGAAATTGCAGATTTGAG 59.455 33.333 16.22 11.07 37.80 3.02
3206 3349 7.330208 GCTACAAATGAAATTGCAGATTTGAGT 59.670 33.333 16.22 1.74 37.80 3.41
3207 3350 9.199982 CTACAAATGAAATTGCAGATTTGAGTT 57.800 29.630 16.22 10.31 37.80 3.01
3209 3352 9.715121 ACAAATGAAATTGCAGATTTGAGTTAT 57.285 25.926 16.22 3.22 37.80 1.89
3218 3361 7.974482 TGCAGATTTGAGTTATAGATGATGG 57.026 36.000 0.00 0.00 0.00 3.51
3219 3362 6.429078 TGCAGATTTGAGTTATAGATGATGGC 59.571 38.462 0.00 0.00 0.00 4.40
3220 3363 6.401903 GCAGATTTGAGTTATAGATGATGGCG 60.402 42.308 0.00 0.00 0.00 5.69
3221 3364 6.870439 CAGATTTGAGTTATAGATGATGGCGA 59.130 38.462 0.00 0.00 0.00 5.54
3222 3365 7.386025 CAGATTTGAGTTATAGATGATGGCGAA 59.614 37.037 0.00 0.00 0.00 4.70
3223 3366 8.099537 AGATTTGAGTTATAGATGATGGCGAAT 58.900 33.333 0.00 0.00 0.00 3.34
3224 3367 7.425577 TTTGAGTTATAGATGATGGCGAATG 57.574 36.000 0.00 0.00 0.00 2.67
3225 3368 4.931601 TGAGTTATAGATGATGGCGAATGC 59.068 41.667 0.00 0.00 41.71 3.56
3226 3369 4.898320 AGTTATAGATGATGGCGAATGCA 58.102 39.130 0.00 0.00 45.35 3.96
3227 3370 4.934001 AGTTATAGATGATGGCGAATGCAG 59.066 41.667 0.00 0.00 45.35 4.41
3228 3371 3.690475 ATAGATGATGGCGAATGCAGA 57.310 42.857 0.00 0.00 45.35 4.26
3229 3372 1.590932 AGATGATGGCGAATGCAGAC 58.409 50.000 0.00 0.00 45.35 3.51
3230 3373 0.234106 GATGATGGCGAATGCAGACG 59.766 55.000 10.29 10.29 45.35 4.18
3231 3374 1.162181 ATGATGGCGAATGCAGACGG 61.162 55.000 15.11 0.00 45.35 4.79
3232 3375 1.815421 GATGGCGAATGCAGACGGT 60.815 57.895 15.11 0.00 45.35 4.83
3233 3376 2.040213 GATGGCGAATGCAGACGGTG 62.040 60.000 15.11 0.00 45.35 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.324943 ATGTCCTCACGTGGAAAGGG 59.675 55.000 17.00 10.37 37.93 3.95
28 29 2.179517 GACGGAGCCGACTCACAG 59.820 66.667 16.83 0.00 45.42 3.66
37 38 1.817209 CAAGGAGTAGGACGGAGCC 59.183 63.158 0.00 0.00 0.00 4.70
38 39 1.142097 GCAAGGAGTAGGACGGAGC 59.858 63.158 0.00 0.00 0.00 4.70
50 51 1.198713 GACTGATGAGAGGGCAAGGA 58.801 55.000 0.00 0.00 0.00 3.36
51 52 0.907486 TGACTGATGAGAGGGCAAGG 59.093 55.000 0.00 0.00 0.00 3.61
52 53 2.169978 TGATGACTGATGAGAGGGCAAG 59.830 50.000 0.00 0.00 0.00 4.01
63 64 2.676176 CGGCTGTGAAGTGATGACTGAT 60.676 50.000 0.00 0.00 30.61 2.90
66 67 0.681733 ACGGCTGTGAAGTGATGACT 59.318 50.000 0.00 0.00 0.00 3.41
67 68 3.217242 ACGGCTGTGAAGTGATGAC 57.783 52.632 0.00 0.00 0.00 3.06
142 143 3.282745 CTGACACGAGTCCCCCACG 62.283 68.421 10.58 0.00 44.33 4.94
214 215 1.578703 TCCTCTCCTATACTTGGGGCA 59.421 52.381 0.00 0.00 0.00 5.36
215 216 1.972075 GTCCTCTCCTATACTTGGGGC 59.028 57.143 0.00 0.00 0.00 5.80
216 217 2.240279 CGTCCTCTCCTATACTTGGGG 58.760 57.143 0.00 0.00 0.00 4.96
217 218 2.240279 CCGTCCTCTCCTATACTTGGG 58.760 57.143 0.00 0.00 0.00 4.12
218 219 2.946785 ACCGTCCTCTCCTATACTTGG 58.053 52.381 0.00 0.00 0.00 3.61
219 220 3.491104 GCAACCGTCCTCTCCTATACTTG 60.491 52.174 0.00 0.00 0.00 3.16
220 221 2.694109 GCAACCGTCCTCTCCTATACTT 59.306 50.000 0.00 0.00 0.00 2.24
221 222 2.308690 GCAACCGTCCTCTCCTATACT 58.691 52.381 0.00 0.00 0.00 2.12
222 223 1.340568 GGCAACCGTCCTCTCCTATAC 59.659 57.143 0.00 0.00 0.00 1.47
223 224 1.063492 TGGCAACCGTCCTCTCCTATA 60.063 52.381 0.00 0.00 0.00 1.31
224 225 0.325296 TGGCAACCGTCCTCTCCTAT 60.325 55.000 0.00 0.00 0.00 2.57
225 226 0.325296 ATGGCAACCGTCCTCTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
226 227 1.201429 AATGGCAACCGTCCTCTCCT 61.201 55.000 0.00 0.00 0.00 3.69
227 228 0.322546 AAATGGCAACCGTCCTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
228 229 0.804989 CAAATGGCAACCGTCCTCTC 59.195 55.000 0.00 0.00 0.00 3.20
229 230 1.244019 GCAAATGGCAACCGTCCTCT 61.244 55.000 0.00 0.00 43.97 3.69
230 231 1.212751 GCAAATGGCAACCGTCCTC 59.787 57.895 0.00 0.00 43.97 3.71
231 232 3.365535 GCAAATGGCAACCGTCCT 58.634 55.556 0.00 0.00 43.97 3.85
266 267 0.315251 TTGAGTCTCCACTGTCGCAG 59.685 55.000 0.00 5.47 37.52 5.18
268 269 0.389166 CCTTGAGTCTCCACTGTCGC 60.389 60.000 0.00 0.00 30.63 5.19
272 273 0.610687 GGTCCCTTGAGTCTCCACTG 59.389 60.000 0.00 0.00 30.63 3.66
306 307 1.614903 TCGCCGGAGTCTCTGTAAAAA 59.385 47.619 5.05 0.00 0.00 1.94
331 360 0.320374 TTTTCCACGAGCGATGGACT 59.680 50.000 11.72 0.00 46.09 3.85
332 361 1.327764 GATTTTCCACGAGCGATGGAC 59.672 52.381 11.72 1.19 46.09 4.02
333 362 1.207089 AGATTTTCCACGAGCGATGGA 59.793 47.619 9.15 9.15 44.74 3.41
335 364 2.270923 TGAGATTTTCCACGAGCGATG 58.729 47.619 0.00 0.00 0.00 3.84
336 365 2.544685 CTGAGATTTTCCACGAGCGAT 58.455 47.619 0.00 0.00 0.00 4.58
340 369 3.257393 CTCACCTGAGATTTTCCACGAG 58.743 50.000 0.00 0.00 44.74 4.18
341 370 2.612972 GCTCACCTGAGATTTTCCACGA 60.613 50.000 6.49 0.00 44.74 4.35
343 372 2.485814 GTGCTCACCTGAGATTTTCCAC 59.514 50.000 6.49 0.43 44.74 4.02
344 373 2.783135 GTGCTCACCTGAGATTTTCCA 58.217 47.619 6.49 0.00 44.74 3.53
346 375 1.129437 GCGTGCTCACCTGAGATTTTC 59.871 52.381 6.49 0.00 44.74 2.29
347 376 1.160137 GCGTGCTCACCTGAGATTTT 58.840 50.000 6.49 0.00 44.74 1.82
348 377 0.035317 TGCGTGCTCACCTGAGATTT 59.965 50.000 6.49 0.00 44.74 2.17
349 378 0.390866 CTGCGTGCTCACCTGAGATT 60.391 55.000 6.49 0.00 44.74 2.40
374 404 2.234414 TGGAAATTGGATTGGAGCAAGC 59.766 45.455 0.00 0.00 0.00 4.01
375 405 4.404715 AGATGGAAATTGGATTGGAGCAAG 59.595 41.667 0.00 0.00 0.00 4.01
390 421 0.970937 AGGGAGACGCGAGATGGAAA 60.971 55.000 15.93 0.00 0.00 3.13
392 423 1.379977 AAGGGAGACGCGAGATGGA 60.380 57.895 15.93 0.00 0.00 3.41
395 426 0.741915 GAAGAAGGGAGACGCGAGAT 59.258 55.000 15.93 0.00 0.00 2.75
445 476 2.823758 GCTATGGCTCCCCTGTCCC 61.824 68.421 0.00 0.00 35.22 4.46
484 518 4.562789 TCAAACTCGAGCTGATCAAATACG 59.437 41.667 13.61 1.08 0.00 3.06
485 519 5.807520 TCTCAAACTCGAGCTGATCAAATAC 59.192 40.000 13.61 0.00 32.75 1.89
489 523 3.942130 TCTCAAACTCGAGCTGATCAA 57.058 42.857 13.61 2.18 32.75 2.57
493 527 5.048013 TGAAAGTATCTCAAACTCGAGCTGA 60.048 40.000 13.61 14.48 32.75 4.26
495 529 5.392767 TGAAAGTATCTCAAACTCGAGCT 57.607 39.130 13.61 0.00 32.75 4.09
497 531 5.164233 TGCTGAAAGTATCTCAAACTCGAG 58.836 41.667 11.84 11.84 35.30 4.04
498 532 5.134202 TGCTGAAAGTATCTCAAACTCGA 57.866 39.130 0.00 0.00 35.30 4.04
499 533 5.845985 TTGCTGAAAGTATCTCAAACTCG 57.154 39.130 0.00 0.00 35.30 4.18
500 534 8.038492 AGAATTGCTGAAAGTATCTCAAACTC 57.962 34.615 0.00 0.00 35.30 3.01
502 553 8.445193 CAAGAATTGCTGAAAGTATCTCAAAC 57.555 34.615 0.00 0.00 40.39 2.93
526 577 1.348696 GTCCCCGGAAAGTAGAAACCA 59.651 52.381 0.73 0.00 0.00 3.67
534 585 1.004394 GAATTCCAGTCCCCGGAAAGT 59.996 52.381 0.73 0.00 45.42 2.66
535 586 1.282157 AGAATTCCAGTCCCCGGAAAG 59.718 52.381 0.73 0.00 45.42 2.62
540 591 1.475751 CCATGAGAATTCCAGTCCCCG 60.476 57.143 0.65 0.00 0.00 5.73
546 597 1.396653 GTGGCCCATGAGAATTCCAG 58.603 55.000 0.00 0.00 0.00 3.86
561 612 2.489938 TTCTGAGTTATGTGGGTGGC 57.510 50.000 0.00 0.00 0.00 5.01
562 613 5.105756 GGAAATTTCTGAGTTATGTGGGTGG 60.106 44.000 17.42 0.00 0.00 4.61
564 615 5.640147 TGGAAATTTCTGAGTTATGTGGGT 58.360 37.500 17.42 0.00 0.00 4.51
572 623 9.082313 AGATGTTAACATGGAAATTTCTGAGTT 57.918 29.630 25.42 18.38 36.57 3.01
573 624 8.641498 AGATGTTAACATGGAAATTTCTGAGT 57.359 30.769 25.42 10.34 36.57 3.41
574 625 9.565213 GAAGATGTTAACATGGAAATTTCTGAG 57.435 33.333 25.42 9.76 36.57 3.35
575 626 9.300681 AGAAGATGTTAACATGGAAATTTCTGA 57.699 29.630 25.42 5.63 36.57 3.27
576 627 9.918630 AAGAAGATGTTAACATGGAAATTTCTG 57.081 29.630 25.42 11.34 36.57 3.02
583 634 9.527157 TCCATAAAAGAAGATGTTAACATGGAA 57.473 29.630 25.42 5.89 36.25 3.53
585 636 8.190784 GGTCCATAAAAGAAGATGTTAACATGG 58.809 37.037 25.42 16.74 36.57 3.66
586 637 8.960591 AGGTCCATAAAAGAAGATGTTAACATG 58.039 33.333 25.42 8.50 36.57 3.21
587 638 9.178758 GAGGTCCATAAAAGAAGATGTTAACAT 57.821 33.333 20.93 20.93 39.70 2.71
588 639 8.160765 TGAGGTCCATAAAAGAAGATGTTAACA 58.839 33.333 11.41 11.41 0.00 2.41
589 640 8.561738 TGAGGTCCATAAAAGAAGATGTTAAC 57.438 34.615 0.00 0.00 0.00 2.01
590 641 9.177608 CATGAGGTCCATAAAAGAAGATGTTAA 57.822 33.333 0.00 0.00 33.31 2.01
591 642 8.328758 ACATGAGGTCCATAAAAGAAGATGTTA 58.671 33.333 0.00 0.00 33.31 2.41
592 643 7.121759 CACATGAGGTCCATAAAAGAAGATGTT 59.878 37.037 0.00 0.00 33.31 2.71
593 644 6.600822 CACATGAGGTCCATAAAAGAAGATGT 59.399 38.462 0.00 0.00 33.31 3.06
595 646 6.962182 TCACATGAGGTCCATAAAAGAAGAT 58.038 36.000 0.00 0.00 33.31 2.40
596 647 6.373005 TCACATGAGGTCCATAAAAGAAGA 57.627 37.500 0.00 0.00 33.31 2.87
597 648 6.600822 ACATCACATGAGGTCCATAAAAGAAG 59.399 38.462 0.00 0.00 33.31 2.85
598 649 6.484288 ACATCACATGAGGTCCATAAAAGAA 58.516 36.000 0.00 0.00 33.31 2.52
599 650 6.065976 ACATCACATGAGGTCCATAAAAGA 57.934 37.500 0.00 0.00 33.31 2.52
600 651 6.600822 AGAACATCACATGAGGTCCATAAAAG 59.399 38.462 0.00 0.00 38.19 2.27
603 654 5.698741 AGAACATCACATGAGGTCCATAA 57.301 39.130 0.00 0.00 38.19 1.90
605 656 4.226846 AGAAGAACATCACATGAGGTCCAT 59.773 41.667 0.00 0.00 38.19 3.41
606 657 3.584406 AGAAGAACATCACATGAGGTCCA 59.416 43.478 0.00 0.00 38.19 4.02
607 658 3.937706 CAGAAGAACATCACATGAGGTCC 59.062 47.826 0.00 0.00 38.19 4.46
608 659 3.937706 CCAGAAGAACATCACATGAGGTC 59.062 47.826 0.00 0.00 38.19 3.85
609 660 3.307975 CCCAGAAGAACATCACATGAGGT 60.308 47.826 0.00 0.00 41.21 3.85
611 662 2.681848 GCCCAGAAGAACATCACATGAG 59.318 50.000 0.00 0.00 0.00 2.90
612 663 2.040145 TGCCCAGAAGAACATCACATGA 59.960 45.455 0.00 0.00 0.00 3.07
613 664 2.422479 CTGCCCAGAAGAACATCACATG 59.578 50.000 0.00 0.00 0.00 3.21
614 665 2.619849 CCTGCCCAGAAGAACATCACAT 60.620 50.000 0.00 0.00 0.00 3.21
638 689 5.003804 TCTGAGGCTGGAAATTGTAAGAAC 58.996 41.667 0.00 0.00 0.00 3.01
653 704 2.614259 TCTTTCCTGAACTCTGAGGCT 58.386 47.619 9.85 0.00 0.00 4.58
654 705 3.409026 TTCTTTCCTGAACTCTGAGGC 57.591 47.619 9.85 1.32 0.00 4.70
655 706 4.513318 GTGTTTCTTTCCTGAACTCTGAGG 59.487 45.833 9.85 0.00 0.00 3.86
729 789 5.301298 ACTCCGTGTTTCTGAAGTTACTACT 59.699 40.000 0.00 0.00 35.68 2.57
731 791 5.779529 ACTCCGTGTTTCTGAAGTTACTA 57.220 39.130 0.00 0.00 0.00 1.82
770 830 9.197694 ACTCGATATCTTCAGCACATAATAAAC 57.802 33.333 0.34 0.00 0.00 2.01
779 839 9.894783 TTACTAATTACTCGATATCTTCAGCAC 57.105 33.333 0.34 0.00 0.00 4.40
884 944 1.337447 TGGCACCGCAAGTAGTACTTC 60.337 52.381 12.75 7.35 36.03 3.01
899 959 5.650703 AGTTTTTGTAGTACCCATATGGCAC 59.349 40.000 16.97 15.25 37.83 5.01
904 964 7.179076 ACTCGAGTTTTTGTAGTACCCATAT 57.821 36.000 13.58 0.00 0.00 1.78
932 992 4.630111 AGAGAAGAGAGCTGAAAACACAG 58.370 43.478 0.00 0.00 40.43 3.66
1131 1195 3.871485 ACTTCTCTGCTTGCCATAAGAG 58.129 45.455 2.48 2.48 37.99 2.85
1164 1228 2.823984 TGAACACGACGAGCCTTTTTA 58.176 42.857 0.00 0.00 0.00 1.52
1168 1232 0.670546 CCATGAACACGACGAGCCTT 60.671 55.000 0.00 0.00 0.00 4.35
1177 1241 0.247460 TCCTCAGAGCCATGAACACG 59.753 55.000 0.00 0.00 0.00 4.49
1187 1254 1.077357 TCCTCGACCTCCTCAGAGC 60.077 63.158 0.00 0.00 38.96 4.09
1189 1256 0.034960 CAGTCCTCGACCTCCTCAGA 60.035 60.000 0.00 0.00 32.18 3.27
1201 1268 1.376553 GCCTGTTCCAGCAGTCCTC 60.377 63.158 0.00 0.00 34.84 3.71
1262 1329 0.250038 TAAGATCTGGCTGCCATCGC 60.250 55.000 23.64 13.73 30.82 4.58
1263 1330 2.344950 GATAAGATCTGGCTGCCATCG 58.655 52.381 23.64 11.95 30.82 3.84
1269 1336 2.411069 CGAATGCGATAAGATCTGGCTG 59.589 50.000 0.00 0.00 40.82 4.85
1273 1340 3.430609 GCACGAATGCGATAAGATCTG 57.569 47.619 0.00 0.00 43.33 2.90
1290 1357 5.424121 AAACTGTACTCACAAGAATGCAC 57.576 39.130 0.00 0.00 33.22 4.57
1314 1381 6.672593 AGGCCATTACAGGAAAAGAATCATA 58.327 36.000 5.01 0.00 0.00 2.15
1315 1382 5.522641 AGGCCATTACAGGAAAAGAATCAT 58.477 37.500 5.01 0.00 0.00 2.45
1323 1390 2.375174 AGTGTGAGGCCATTACAGGAAA 59.625 45.455 5.01 0.00 0.00 3.13
1369 1437 6.551601 AGGAGACGAGGTCAAGATTACATAAT 59.448 38.462 0.00 0.00 34.60 1.28
1384 1457 0.757188 ATGCCCTGTAGGAGACGAGG 60.757 60.000 0.00 0.00 38.24 4.63
1413 1486 5.794894 TCTTCCAACATACTTCTCAGAACC 58.205 41.667 0.00 0.00 0.00 3.62
1444 1517 6.268387 AGGATGTTTCTGAAACCATGTTCAAT 59.732 34.615 25.66 12.80 40.67 2.57
1446 1519 5.009911 CAGGATGTTTCTGAAACCATGTTCA 59.990 40.000 25.66 9.67 40.67 3.18
1450 1523 5.909621 ATCAGGATGTTTCTGAAACCATG 57.090 39.130 25.66 19.35 43.43 3.66
1488 1561 1.040646 TGAAGACACGGACTGCTTCT 58.959 50.000 0.00 0.00 35.61 2.85
1599 1677 8.630917 GGTTCTGTCAAGCTATATCTTGTAGTA 58.369 37.037 14.33 7.16 42.90 1.82
1602 1680 7.661536 AGGTTCTGTCAAGCTATATCTTGTA 57.338 36.000 14.33 6.19 42.90 2.41
1628 1706 6.173339 TCACCAGAGGAACAAAATAGATGAC 58.827 40.000 0.00 0.00 0.00 3.06
1629 1707 6.373005 TCACCAGAGGAACAAAATAGATGA 57.627 37.500 0.00 0.00 0.00 2.92
1630 1708 6.404074 GCTTCACCAGAGGAACAAAATAGATG 60.404 42.308 0.00 0.00 0.00 2.90
1631 1709 5.649831 GCTTCACCAGAGGAACAAAATAGAT 59.350 40.000 0.00 0.00 0.00 1.98
1634 1712 4.985538 AGCTTCACCAGAGGAACAAAATA 58.014 39.130 0.00 0.00 0.00 1.40
1635 1713 3.837355 AGCTTCACCAGAGGAACAAAAT 58.163 40.909 0.00 0.00 0.00 1.82
1636 1714 3.297134 AGCTTCACCAGAGGAACAAAA 57.703 42.857 0.00 0.00 0.00 2.44
1638 1716 2.951642 CAAAGCTTCACCAGAGGAACAA 59.048 45.455 0.00 0.00 0.00 2.83
1639 1717 2.172505 TCAAAGCTTCACCAGAGGAACA 59.827 45.455 0.00 0.00 0.00 3.18
1640 1718 2.810852 CTCAAAGCTTCACCAGAGGAAC 59.189 50.000 0.00 0.00 0.00 3.62
1643 1721 1.163554 GCTCAAAGCTTCACCAGAGG 58.836 55.000 0.00 0.00 38.45 3.69
1666 1746 4.414337 AGGGCATACTTCTTCATCTCAC 57.586 45.455 0.00 0.00 0.00 3.51
1679 1759 2.017049 ACGAGCAAATGAAGGGCATAC 58.983 47.619 0.00 0.00 35.78 2.39
1844 1924 4.368315 TGAAATCTCCAACGATCATACGG 58.632 43.478 0.00 0.00 37.61 4.02
1854 1934 5.495640 AGAGATGGTCTTGAAATCTCCAAC 58.504 41.667 15.30 0.00 44.90 3.77
1855 1935 5.486775 AGAGAGATGGTCTTGAAATCTCCAA 59.513 40.000 15.30 0.00 44.90 3.53
1969 2049 7.166851 CCATATTAGGATGCTCTGTTTCAGAT 58.833 38.462 0.00 0.00 39.92 2.90
2008 2088 0.687354 AGATGTTGCGAGGTGGAGTT 59.313 50.000 0.00 0.00 0.00 3.01
2050 2130 7.963465 AGACGATTATAGACATAACATGTAGCG 59.037 37.037 0.00 0.00 45.03 4.26
2051 2131 9.279904 GAGACGATTATAGACATAACATGTAGC 57.720 37.037 0.00 0.00 45.03 3.58
2055 2135 7.024171 AGCGAGACGATTATAGACATAACATG 58.976 38.462 0.00 0.00 29.44 3.21
2060 2140 9.543783 ACATATAGCGAGACGATTATAGACATA 57.456 33.333 0.00 0.00 0.00 2.29
2061 2141 8.439993 ACATATAGCGAGACGATTATAGACAT 57.560 34.615 0.00 0.00 0.00 3.06
2062 2142 7.845066 ACATATAGCGAGACGATTATAGACA 57.155 36.000 0.00 0.00 0.00 3.41
2067 2147 8.894731 AGACATAACATATAGCGAGACGATTAT 58.105 33.333 0.00 0.00 0.00 1.28
2068 2148 8.265165 AGACATAACATATAGCGAGACGATTA 57.735 34.615 0.00 0.00 0.00 1.75
2069 2149 7.147143 AGACATAACATATAGCGAGACGATT 57.853 36.000 0.00 0.00 0.00 3.34
2070 2150 6.745159 AGACATAACATATAGCGAGACGAT 57.255 37.500 0.00 0.00 0.00 3.73
2071 2151 7.845066 ATAGACATAACATATAGCGAGACGA 57.155 36.000 0.00 0.00 0.00 4.20
2092 2172 6.918022 TGTGTGCGTCATGTAGAAGATTATAG 59.082 38.462 0.00 0.00 0.00 1.31
2096 2176 3.679980 GTGTGTGCGTCATGTAGAAGATT 59.320 43.478 0.00 0.00 0.00 2.40
2103 2183 3.926821 TCTAAGTGTGTGCGTCATGTA 57.073 42.857 0.00 0.00 0.00 2.29
2150 2230 5.168569 TGACAGTAAGTTGTGCAGCTATAC 58.831 41.667 0.00 0.00 0.00 1.47
2165 2248 6.127451 ACGATGAGTATGAACCATGACAGTAA 60.127 38.462 0.00 0.00 0.00 2.24
2194 2277 6.293407 CCTTCTCTGCGTCAAATTCAGTTTTA 60.293 38.462 0.00 0.00 0.00 1.52
2396 2479 4.520846 GCCGAGAAATGGCGCACG 62.521 66.667 10.83 2.74 43.70 5.34
2581 2666 8.268850 AGCAAACATCTGTTGTATTAACCTAG 57.731 34.615 0.00 0.00 37.68 3.02
2701 2800 1.225855 TGTGATGTTTGTCTGTCCGC 58.774 50.000 0.00 0.00 0.00 5.54
2703 2802 8.816640 ATTTTAATTGTGATGTTTGTCTGTCC 57.183 30.769 0.00 0.00 0.00 4.02
2717 2835 9.231297 TCCCTAGTCTTCTGAATTTTAATTGTG 57.769 33.333 0.00 0.00 0.00 3.33
2718 2836 9.454859 CTCCCTAGTCTTCTGAATTTTAATTGT 57.545 33.333 0.00 0.00 0.00 2.71
2738 2856 5.023452 TGATGTGTTAGCTTCTTCTCCCTA 58.977 41.667 0.00 0.00 0.00 3.53
2748 2866 6.538021 CAGCTAGAAATCTGATGTGTTAGCTT 59.462 38.462 15.63 4.93 40.23 3.74
2750 2868 5.277250 GCAGCTAGAAATCTGATGTGTTAGC 60.277 44.000 10.72 10.72 34.11 3.09
2751 2869 5.236047 GGCAGCTAGAAATCTGATGTGTTAG 59.764 44.000 0.00 0.00 32.26 2.34
2752 2870 5.104776 AGGCAGCTAGAAATCTGATGTGTTA 60.105 40.000 0.00 0.00 32.26 2.41
2771 2900 4.077822 AGTGAGAAAAAGATGGAAGGCAG 58.922 43.478 0.00 0.00 0.00 4.85
2781 2910 2.507886 TGGTGGGTGAGTGAGAAAAAGA 59.492 45.455 0.00 0.00 0.00 2.52
2787 2916 1.351017 GGATTTGGTGGGTGAGTGAGA 59.649 52.381 0.00 0.00 0.00 3.27
2788 2917 1.614317 GGGATTTGGTGGGTGAGTGAG 60.614 57.143 0.00 0.00 0.00 3.51
2803 2932 2.233676 GGTCAATTCCTTTTGCGGGATT 59.766 45.455 0.00 0.00 32.41 3.01
2806 2935 0.109319 CGGTCAATTCCTTTTGCGGG 60.109 55.000 0.00 0.00 0.00 6.13
2809 2938 2.147436 TTGCGGTCAATTCCTTTTGC 57.853 45.000 0.00 0.00 0.00 3.68
2812 2941 3.963129 TCCTATTGCGGTCAATTCCTTT 58.037 40.909 3.63 0.00 42.51 3.11
2815 2944 4.918810 ATTTCCTATTGCGGTCAATTCC 57.081 40.909 3.63 0.00 42.51 3.01
2856 2998 2.555757 AGAAATGCTGAAGAAGTGGCAC 59.444 45.455 10.29 10.29 37.52 5.01
2893 3035 6.480651 TGCAACATGTACAAATAGTATACCCG 59.519 38.462 0.00 0.00 34.67 5.28
2894 3036 7.041372 CCTGCAACATGTACAAATAGTATACCC 60.041 40.741 0.00 0.00 34.67 3.69
2938 3080 1.065199 TCTTTCTTGCTCCGATGCCAT 60.065 47.619 0.00 0.00 0.00 4.40
2939 3081 0.324614 TCTTTCTTGCTCCGATGCCA 59.675 50.000 0.00 0.00 0.00 4.92
2975 3118 6.441222 TCTCTAGGACCTTACACACCAATAT 58.559 40.000 0.00 0.00 0.00 1.28
3006 3149 5.389859 TTTTAGGATGGATGTGCTTGTTG 57.610 39.130 0.00 0.00 0.00 3.33
3012 3155 4.889409 TCCTCATTTTTAGGATGGATGTGC 59.111 41.667 0.00 0.00 38.24 4.57
3015 3158 7.839907 TGTTTTCCTCATTTTTAGGATGGATG 58.160 34.615 0.00 0.00 42.69 3.51
3016 3159 8.613922 ATGTTTTCCTCATTTTTAGGATGGAT 57.386 30.769 0.00 0.00 42.69 3.41
3044 3187 3.071874 AGTTTCATTCGGCATCAAGGA 57.928 42.857 0.00 0.00 0.00 3.36
3047 3190 2.352617 GCCAAGTTTCATTCGGCATCAA 60.353 45.455 0.00 0.00 42.50 2.57
3049 3192 1.913317 GCCAAGTTTCATTCGGCATC 58.087 50.000 0.00 0.00 42.50 3.91
3055 3198 8.243426 TGTTGAACTATATGCCAAGTTTCATTC 58.757 33.333 0.00 0.00 36.10 2.67
3057 3200 7.394359 ACTGTTGAACTATATGCCAAGTTTCAT 59.606 33.333 0.00 0.00 36.10 2.57
3060 3203 8.630054 TTACTGTTGAACTATATGCCAAGTTT 57.370 30.769 0.00 0.00 36.10 2.66
3062 3205 9.899661 TTATTACTGTTGAACTATATGCCAAGT 57.100 29.630 0.00 0.00 0.00 3.16
3071 3214 8.504005 GTGCTTGTGTTATTACTGTTGAACTAT 58.496 33.333 0.00 0.00 0.00 2.12
3078 3221 6.936900 AGATCTGTGCTTGTGTTATTACTGTT 59.063 34.615 0.00 0.00 0.00 3.16
3091 3234 4.214971 AGCAGTAAACAAGATCTGTGCTTG 59.785 41.667 0.00 0.00 46.20 4.01
3092 3235 4.392940 AGCAGTAAACAAGATCTGTGCTT 58.607 39.130 0.00 0.00 38.67 3.91
3093 3236 4.013267 AGCAGTAAACAAGATCTGTGCT 57.987 40.909 0.00 0.00 38.67 4.40
3094 3237 4.453819 AGAAGCAGTAAACAAGATCTGTGC 59.546 41.667 0.00 0.00 38.67 4.57
3095 3238 6.551385 AAGAAGCAGTAAACAAGATCTGTG 57.449 37.500 0.00 0.00 38.67 3.66
3096 3239 7.573968 AAAAGAAGCAGTAAACAAGATCTGT 57.426 32.000 0.00 0.00 41.27 3.41
3097 3240 8.233190 CCTAAAAGAAGCAGTAAACAAGATCTG 58.767 37.037 0.00 0.00 0.00 2.90
3098 3241 7.391833 CCCTAAAAGAAGCAGTAAACAAGATCT 59.608 37.037 0.00 0.00 0.00 2.75
3099 3242 7.390718 TCCCTAAAAGAAGCAGTAAACAAGATC 59.609 37.037 0.00 0.00 0.00 2.75
3100 3243 7.231467 TCCCTAAAAGAAGCAGTAAACAAGAT 58.769 34.615 0.00 0.00 0.00 2.40
3101 3244 6.597562 TCCCTAAAAGAAGCAGTAAACAAGA 58.402 36.000 0.00 0.00 0.00 3.02
3102 3245 6.568653 GCTCCCTAAAAGAAGCAGTAAACAAG 60.569 42.308 0.00 0.00 0.00 3.16
3103 3246 5.240844 GCTCCCTAAAAGAAGCAGTAAACAA 59.759 40.000 0.00 0.00 0.00 2.83
3104 3247 4.760204 GCTCCCTAAAAGAAGCAGTAAACA 59.240 41.667 0.00 0.00 0.00 2.83
3105 3248 5.004448 AGCTCCCTAAAAGAAGCAGTAAAC 58.996 41.667 0.00 0.00 0.00 2.01
3106 3249 5.242795 AGCTCCCTAAAAGAAGCAGTAAA 57.757 39.130 0.00 0.00 0.00 2.01
3107 3250 4.910458 AGCTCCCTAAAAGAAGCAGTAA 57.090 40.909 0.00 0.00 0.00 2.24
3108 3251 4.565652 CCAAGCTCCCTAAAAGAAGCAGTA 60.566 45.833 0.00 0.00 0.00 2.74
3109 3252 3.416156 CAAGCTCCCTAAAAGAAGCAGT 58.584 45.455 0.00 0.00 0.00 4.40
3110 3253 2.751806 CCAAGCTCCCTAAAAGAAGCAG 59.248 50.000 0.00 0.00 0.00 4.24
3111 3254 2.795329 CCAAGCTCCCTAAAAGAAGCA 58.205 47.619 0.00 0.00 0.00 3.91
3112 3255 1.474478 GCCAAGCTCCCTAAAAGAAGC 59.526 52.381 0.00 0.00 0.00 3.86
3113 3256 1.740025 CGCCAAGCTCCCTAAAAGAAG 59.260 52.381 0.00 0.00 0.00 2.85
3114 3257 1.613255 CCGCCAAGCTCCCTAAAAGAA 60.613 52.381 0.00 0.00 0.00 2.52
3115 3258 0.035439 CCGCCAAGCTCCCTAAAAGA 60.035 55.000 0.00 0.00 0.00 2.52
3116 3259 0.035439 TCCGCCAAGCTCCCTAAAAG 60.035 55.000 0.00 0.00 0.00 2.27
3117 3260 0.035439 CTCCGCCAAGCTCCCTAAAA 60.035 55.000 0.00 0.00 0.00 1.52
3118 3261 1.198759 ACTCCGCCAAGCTCCCTAAA 61.199 55.000 0.00 0.00 0.00 1.85
3119 3262 1.198759 AACTCCGCCAAGCTCCCTAA 61.199 55.000 0.00 0.00 0.00 2.69
3120 3263 1.612442 AACTCCGCCAAGCTCCCTA 60.612 57.895 0.00 0.00 0.00 3.53
3121 3264 2.930562 AACTCCGCCAAGCTCCCT 60.931 61.111 0.00 0.00 0.00 4.20
3122 3265 2.747855 CAACTCCGCCAAGCTCCC 60.748 66.667 0.00 0.00 0.00 4.30
3123 3266 1.743252 CTCAACTCCGCCAAGCTCC 60.743 63.158 0.00 0.00 0.00 4.70
3124 3267 0.246635 TACTCAACTCCGCCAAGCTC 59.753 55.000 0.00 0.00 0.00 4.09
3125 3268 0.685097 TTACTCAACTCCGCCAAGCT 59.315 50.000 0.00 0.00 0.00 3.74
3126 3269 0.796927 GTTACTCAACTCCGCCAAGC 59.203 55.000 0.00 0.00 0.00 4.01
3127 3270 2.457366 AGTTACTCAACTCCGCCAAG 57.543 50.000 0.00 0.00 41.25 3.61
3128 3271 2.629137 TGTAGTTACTCAACTCCGCCAA 59.371 45.455 0.00 0.00 44.04 4.52
3129 3272 2.230508 CTGTAGTTACTCAACTCCGCCA 59.769 50.000 0.00 0.00 44.04 5.69
3130 3273 2.230750 ACTGTAGTTACTCAACTCCGCC 59.769 50.000 0.00 0.00 44.04 6.13
3131 3274 3.572604 ACTGTAGTTACTCAACTCCGC 57.427 47.619 0.00 0.00 44.04 5.54
3132 3275 4.680110 CACAACTGTAGTTACTCAACTCCG 59.320 45.833 0.00 0.00 44.04 4.63
3133 3276 5.839621 TCACAACTGTAGTTACTCAACTCC 58.160 41.667 0.00 0.00 44.04 3.85
3134 3277 7.652105 TGATTCACAACTGTAGTTACTCAACTC 59.348 37.037 0.00 0.00 44.04 3.01
3135 3278 7.497595 TGATTCACAACTGTAGTTACTCAACT 58.502 34.615 0.00 0.00 46.77 3.16
3136 3279 7.709269 TGATTCACAACTGTAGTTACTCAAC 57.291 36.000 0.00 0.00 36.32 3.18
3137 3280 8.367911 AGATGATTCACAACTGTAGTTACTCAA 58.632 33.333 0.00 0.00 36.32 3.02
3138 3281 7.896811 AGATGATTCACAACTGTAGTTACTCA 58.103 34.615 0.00 0.00 36.32 3.41
3139 3282 9.509855 CTAGATGATTCACAACTGTAGTTACTC 57.490 37.037 0.00 0.00 36.32 2.59
3140 3283 9.244292 TCTAGATGATTCACAACTGTAGTTACT 57.756 33.333 0.00 0.00 36.32 2.24
3143 3286 8.753133 TCATCTAGATGATTCACAACTGTAGTT 58.247 33.333 27.93 0.00 42.42 2.24
3144 3287 8.298729 TCATCTAGATGATTCACAACTGTAGT 57.701 34.615 27.93 0.00 42.42 2.73
3158 3301 8.681806 GTAGCTGCTACATAATCATCTAGATGA 58.318 37.037 32.16 32.16 42.36 2.92
3159 3302 8.465201 TGTAGCTGCTACATAATCATCTAGATG 58.535 37.037 32.44 24.32 41.33 2.90
3160 3303 8.586879 TGTAGCTGCTACATAATCATCTAGAT 57.413 34.615 32.44 0.00 41.33 1.98
3161 3304 8.409358 TTGTAGCTGCTACATAATCATCTAGA 57.591 34.615 35.17 17.86 44.85 2.43
3162 3305 9.650539 ATTTGTAGCTGCTACATAATCATCTAG 57.349 33.333 35.17 0.00 44.85 2.43
3163 3306 9.428097 CATTTGTAGCTGCTACATAATCATCTA 57.572 33.333 35.17 18.95 44.85 1.98
3164 3307 8.152898 TCATTTGTAGCTGCTACATAATCATCT 58.847 33.333 35.17 16.60 44.85 2.90
3165 3308 8.315391 TCATTTGTAGCTGCTACATAATCATC 57.685 34.615 35.17 11.41 44.85 2.92
3166 3309 8.681486 TTCATTTGTAGCTGCTACATAATCAT 57.319 30.769 35.17 21.42 44.85 2.45
3167 3310 8.504812 TTTCATTTGTAGCTGCTACATAATCA 57.495 30.769 35.17 22.81 44.85 2.57
3168 3311 9.956720 AATTTCATTTGTAGCTGCTACATAATC 57.043 29.630 35.17 13.39 44.85 1.75
3169 3312 9.740239 CAATTTCATTTGTAGCTGCTACATAAT 57.260 29.630 35.17 29.95 44.85 1.28
3170 3313 7.701924 GCAATTTCATTTGTAGCTGCTACATAA 59.298 33.333 35.17 29.35 44.85 1.90
3171 3314 7.148103 TGCAATTTCATTTGTAGCTGCTACATA 60.148 33.333 35.17 30.96 44.85 2.29
3172 3315 6.038356 GCAATTTCATTTGTAGCTGCTACAT 58.962 36.000 35.17 22.79 44.85 2.29
3173 3316 5.048154 TGCAATTTCATTTGTAGCTGCTACA 60.048 36.000 32.44 32.44 44.00 2.74
3174 3317 5.401550 TGCAATTTCATTTGTAGCTGCTAC 58.598 37.500 28.34 28.34 37.46 3.58
3175 3318 5.415389 TCTGCAATTTCATTTGTAGCTGCTA 59.585 36.000 5.02 5.02 38.67 3.49
3176 3319 4.219070 TCTGCAATTTCATTTGTAGCTGCT 59.781 37.500 7.57 7.57 38.67 4.24
3177 3320 4.487948 TCTGCAATTTCATTTGTAGCTGC 58.512 39.130 0.00 0.00 38.67 5.25
3178 3321 7.329962 TCAAATCTGCAATTTCATTTGTAGCTG 59.670 33.333 0.00 0.00 38.67 4.24
3179 3322 7.380536 TCAAATCTGCAATTTCATTTGTAGCT 58.619 30.769 0.00 0.00 38.67 3.32
3180 3323 7.330208 ACTCAAATCTGCAATTTCATTTGTAGC 59.670 33.333 11.46 0.00 38.67 3.58
3181 3324 8.752766 ACTCAAATCTGCAATTTCATTTGTAG 57.247 30.769 11.46 0.00 39.72 2.74
3183 3326 9.715121 ATAACTCAAATCTGCAATTTCATTTGT 57.285 25.926 11.46 0.00 37.46 2.83
3192 3335 9.011095 CCATCATCTATAACTCAAATCTGCAAT 57.989 33.333 0.00 0.00 0.00 3.56
3193 3336 7.040892 GCCATCATCTATAACTCAAATCTGCAA 60.041 37.037 0.00 0.00 0.00 4.08
3194 3337 6.429078 GCCATCATCTATAACTCAAATCTGCA 59.571 38.462 0.00 0.00 0.00 4.41
3195 3338 6.401903 CGCCATCATCTATAACTCAAATCTGC 60.402 42.308 0.00 0.00 0.00 4.26
3196 3339 6.870439 TCGCCATCATCTATAACTCAAATCTG 59.130 38.462 0.00 0.00 0.00 2.90
3197 3340 6.997655 TCGCCATCATCTATAACTCAAATCT 58.002 36.000 0.00 0.00 0.00 2.40
3198 3341 7.658179 TTCGCCATCATCTATAACTCAAATC 57.342 36.000 0.00 0.00 0.00 2.17
3199 3342 7.361542 GCATTCGCCATCATCTATAACTCAAAT 60.362 37.037 0.00 0.00 0.00 2.32
3200 3343 6.073058 GCATTCGCCATCATCTATAACTCAAA 60.073 38.462 0.00 0.00 0.00 2.69
3201 3344 5.409520 GCATTCGCCATCATCTATAACTCAA 59.590 40.000 0.00 0.00 0.00 3.02
3202 3345 4.931601 GCATTCGCCATCATCTATAACTCA 59.068 41.667 0.00 0.00 0.00 3.41
3203 3346 4.931601 TGCATTCGCCATCATCTATAACTC 59.068 41.667 0.00 0.00 37.32 3.01
3204 3347 4.898320 TGCATTCGCCATCATCTATAACT 58.102 39.130 0.00 0.00 37.32 2.24
3205 3348 4.931601 TCTGCATTCGCCATCATCTATAAC 59.068 41.667 0.00 0.00 37.32 1.89
3206 3349 4.931601 GTCTGCATTCGCCATCATCTATAA 59.068 41.667 0.00 0.00 37.32 0.98
3207 3350 4.498241 GTCTGCATTCGCCATCATCTATA 58.502 43.478 0.00 0.00 37.32 1.31
3208 3351 3.332919 GTCTGCATTCGCCATCATCTAT 58.667 45.455 0.00 0.00 37.32 1.98
3209 3352 2.759191 GTCTGCATTCGCCATCATCTA 58.241 47.619 0.00 0.00 37.32 1.98
3210 3353 1.590932 GTCTGCATTCGCCATCATCT 58.409 50.000 0.00 0.00 37.32 2.90
3211 3354 0.234106 CGTCTGCATTCGCCATCATC 59.766 55.000 0.00 0.00 37.32 2.92
3212 3355 1.162181 CCGTCTGCATTCGCCATCAT 61.162 55.000 5.36 0.00 37.32 2.45
3213 3356 1.815003 CCGTCTGCATTCGCCATCA 60.815 57.895 5.36 0.00 37.32 3.07
3214 3357 1.815421 ACCGTCTGCATTCGCCATC 60.815 57.895 5.36 0.00 37.32 3.51
3215 3358 2.108514 CACCGTCTGCATTCGCCAT 61.109 57.895 5.36 0.00 37.32 4.40
3216 3359 2.741985 CACCGTCTGCATTCGCCA 60.742 61.111 5.36 0.00 37.32 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.