>input_sequence_56810
--------------------------------------------------------------------------------
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--------------------ATGGCGCCCCTGGAGTCAGGCTCCTCACAGCTCTTCTTCGACAGCAGTGCGATCGACGGC
CCGTTCGATGTCTACGAGTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCCA---CCTGGAACCTCTTA
TGGCAAGCAGAGAAGTTCCAGGAATGCTAAAAAGGCTCGTCGTGTTC---ATGGCTCTGAGGAGGTCGAGGACTGCTGGA
ACAGGCTATTCTTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGGCGATGGCAGCCAGATCTTATCGCATTCGTGC
ATTCTTGTGAGTACAGTTTTTATGATTCTTTTCCTGTAATGGCCTCACACTC-CTAGAACAGAGGCAGGTTTTGATATTA
TGTAA-----TCTTGACCTCGTCTCCTACAGGGCATCAGATCTCCGGTTCTGAGAAGTATGTTGGAAGAAGCTAGAATTG
AACATGGTTTCAGAAACATCCTGATTTCCGGTGTCCCATCAGAAGCAGTCCGTGTCTTCATCAGATTTCTGTATTCTTCA
CGGTATGAATGTGGGCTGTG---TTCATGCCTGAATGTTTATGTTTCTTCAGAGTTTTCAGTATG--CTCTTCTTTTACT
ACAAGATATAGCTTGACAGAACCTTGTCATCTATTTTGTTC--CTCTGGTGAAGCTTTGAGCAGGGTGAGATGAAGAAGT
ATGCCCTTCATTTGCTCGTACTCTCTCATGTTTTCTCGGTACAATCGCTGAAGATCGTCTGCACCGACCAGCTCGAGAGG
TTTTTTCTTGCTCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCACCAAGGCTCTCGCTCATCTG
TACCCGTATGATCGTTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAACCCAAGCC
TGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTATCTGAAACAGAGCATCCTAATATGGCTTAAT
CACTAGTAACTCCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTCGCTACATGTTATGTCTATAATCGTCTCGCT
ATATGTTATGTCTATAATCTTCTACATGACGCACACACTTAGAATGCTTATACCTGCTGTCAGAAAATTGTATAGCTGCA
CA---ACTTACTGTCATGGTTCATACTCATCGTTCTTAAAACTGAATTTGACGCAGAGAAGGCAAGAAAGAGCTAA----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------
>chr3D_1_TraesCS3D01G394800
GGCGCGCCCTTTCCACGTGAGGACATATCTGTGAGTCGGCTCCGTCCTACTCCTTGCCCTCTCATCAGTCATCACTTCAC
AGCCGTGGCGGGCACCGCAGACGCACCTGCCTCGTGGCAGTGACATGCGGGGCCGGGCCTTCCGTGGGGGACTCGTGTCA
GGCACACGCAGCACGTGGCCCCCTCCCCCCAGCCTGCGTGGGCGTGTGGCCAAGTGCCCCAAGTATAGGAGAGGACGGTT
GCCATTTGCTGCAGGCTTCAAAAGCTCTGCGACAGTGGAGACTCAAGGGACCGTTCCCGACCTCATT-------------
---------------TTTTACAGAGACTCCGGCGACTCCAGTCCATCGCTCGTGGAAAATCTCAGGTGAGCACGCA-GCT
GTGGCTTGCTCCAAT-CCAATTTCCATCTCGCGTCTCCCTTCTTCCCCGTCGATTTCCCCTCTCTGATGGTCCCAGGGAC
AGGGGAGCCATAGCTCTT---GAGTGAGGAGCTGAAGCGTATTTGATCAGCTCG-----------------AGTTTGAGA
TACTTTCAGCAATTCTTGGTTTCTACTTTCCGGGGACTGGAATTCTCATGGGCCACCCACATAACTCAGAAATTTCCATG
TTAACATCTTCTTTTATGGACCTCATGTGATGTTCTTCTGGGCAGGAAGTTCTTACAATTTCCAGCCTCAGAGTTCAGGA
AAGAAACA-CATGGATGTAATTCTGTGCATATTTTCCTTCAACTCACTATTT--------TAGTATGAAGTAGTAACTTC
AGAAACACGGAGTTCTCATTAATTTATTTGTTTATTATGTGCTGAAGATATCGAGTAATTAGTAATGAATCACTTGCCTT
ACGTTATGCCTTTGGTTTCTTCCATCTATTTATAACAACTTCTTCCTGAACCTTGCTTCAAAGGAAGTACTACTTGCGGT
GCCATATGGGTACTACAAAAACTCGAGTAGGCTGTGTTTTCAGCTCTCTTCTCTCTTGATCATTTTGGCTTGCAGGGTCA
AAGCAGGAGGCACACCTT-GATGGCGCCCCTGGAGTCAGGCTCCTCACAGCTCTTCTTCGACAGCAGTGCGATCGACGGC
CCGTTCGATGTCTACGAGTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCCA---CCTGGAACCTCTTA
TGGCAAGCAGAGAAGTTCCAGGAATGCTAAAAAGGCTCGTCGTGTTC---ATGGCTCTGAGGAGGTCGAGGACTGCTGGA
ACAGGCTATTCTTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGGCGATGGCAGCCAGATCTTATCGCATTCGTGC
ATTCTTGTGAGTACAGTTTTTATGATTCTTTTCCTGTAATGGCCTCACACTC-CTAGAACAGAGGCAGGTTTTGATATTA
TGTAA-----TCTTGACCTCGTCTCCTACAGGGCATCAGATCTCCGGTTCTGAGAAGTATGTTGGAAGAAGCTAGAATTG
AACATGGTTTCAGAAACATCCTGATTTCCGGTGTCCCATCAGAAGCAGTCCGTGTCTTCATCAGATTTCTGTATTCTTCA
CGGTATGAATGTGGGCTGTG---TTCATGCCTGAATGTTTATGTTTCTTCAGAGTTTTCAGTATG--CTCTTCTTTTACT
ACAAGATATAGCTTGACAGAACCTTGTCATCTATTTTGTTC--CTCTGGTGAAGCTTTGAGCAGGGTGAGATGAAGAAGT
ATGCCCTTCATTTGCTCGTACTCTCTCATGTTTTCTCGGTACAATCGCTGAAGATCGTCTGCACCGACCAGCTCGAGAGG
TTTTTTCTTGCTCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCACCAAGGCTCTCGCTCATCTG
TACCCGTATGATCGTTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAACCCAAGCC
TGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTATCTGAAACAGAGCATCCTAATATGGCTTAAT
CACTAGTAACTCCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTCGCTACATGTTATGTCTATAATCGTCTCGCT
ATATGTTATGTCTATAATCTTCTACATGACGCACACACTTAGAATGCTTATACCTGCTGTCAGAAAATTGTATAGCTGCA
CA---ACTTACTGTCATGGTTCATACTCATCGTTCTTAAAACTGAATTTGACGCAGAGAAGGCAAGAAAGAGCTAAAAGG
ATGGAGGAAAAGAAGGTTTATCTTCAGTTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGTTGTAGGAC
GATTGGCCCCTGGGATCAGAAACTCAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTCG
TGCGCCATTTCTCGGCATGCAAAAAACGTGTGCCTCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTCTTGAGCTG
CATTCTCGAATGTGTTCCACACCAGACACCTGCAGGGTTCCTCTATGCAGGTGAGGTCT--TGTCTTTGTTGGTCAGGAT
CATTTCATTTAGACACACAAGTTTTCTAGGTTAATAC-------------AACAGATGTTTGCTTTCATAGCATTTCAGA
ATATATTTTTAGTACCCCTTTTCCAAAAGGGGCG-CCCCTCCTAGCTTCATCTCCATAAACTGAAGGTAGGTGGACTTAG
CGGACAGAC-------------------AAACATCACAATTAAAATTCAGAAGACTAGGGAGAAGAAGCTAACACAT---
--------CAGATTTCTAGCTGCCTTCCATCTTTTTCTCACTCACCCACCAAATCCCGCAAAAGG------------AAT
TGACCGCAATAGG-AAATTTACTGTCGTACGCATACCGTGCCACTTCTTCAGCATTTCTGTTATATTCACTTCACGGGTA
TACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATATGG-CATCGGAGCAAGAAAGAAGAAATCAAATGGAACATA
TTGGTGTGTAAGGTCCTAGAGAGCAATGCAACAAGCACATCCATCCTAAAAATGAGGAAAACATCATCCTTGATGCCGAA
TGAAACTTGGCATATAGTTCAACAGTAATAACACAAGCACAGATCTTGTTTACTGCTTCTTTTAGGGAGCTTGGCGGAGT
TGAGTAACTACAGTTGTGAATCATCTAGATGATTATGTAGCAGCTACAAATGAAATTGCAGATTTGAGTTATAGATGATG
GCGAATGCAGACGGTG
>chr3A_1
GGCGCGTCCTTTCCACGTGAGGACATATGTGTGAGTCACCTCCGTCCTACCTTTTGCCCTCTCGTCG-------CTTCAC
AGCCGTGGCGGGCACCGAAGACGCACCTGCCTCGTGGCAGTGACATGCGGGGCCGGGCCTTCTGTGGGGGACTCGTGTCA
GCCACACACAGCACGTGGCCCCCTCCCCCCAGCCTGCGTGGGCGTGTGGCCAAGCAGGAAGGTAGCCAA-----------
----------GCAGGCTTCAAAAGCTTT-CGAGAGTGGAGACTGAAGGGACGGTGGTGGTGCTGCAGCCCAGCTTCTTTC
TCTTCCCGTCGTCGCTTTTACAGAGACTCCGGCGACTCCGACCACTCGAGCACG----ATCTCAGGTGAGCACGCA-GCT
GCGATTTGCTCCAGT-CCAAGTCCCCTCTCGAGTCTCCCTTCTTCCCCGTCGGTTTCCCCTCTCTGATGGTCCAAAGGAC
CTGGGAGCCATAGCTCTTCTTCAGTGAGGAGCTGAAGAATATCTGAGCTGAGAATCATTTGATAAGCTCAAAATTTGAGA
GCCGTTTAGAAAT-------------TTGCTGGGGAGTGGAAGTCTCATGGAACGCCTCAGAGTTCAGAAA---TAGTCT
GATTCCCTGGTTTATGGCCTT----TGTGATGTTCTTCCGGGCAGCAAATTCTTACAATTTCC---CTCAGAGTTCAGGA
AAAAAACAACATGGATGTAATTATGTGCATCTTTTCCTTGAACCCACTATTACTTATTACTAGTAGTATGAAGTAACTTC
AGAAATAC--AGTACTCATTAATTTATTTATTTATTATTTGCCCAAGATATCGAGTAATTAACAGTGAATCACTTGCCTT
ACGTTATGCCTTTGGGTTCTTCCATCTATTTATTACAACTTCTTCCTGAACCTTCCTTCAAGGAAAGTACTACTTGCGCT
GCCGTATGGGTACTACAAAAACTCGAGTAGGTTGTGGTTTCAGCTCTCTTCTCTCTTGATCATTTGGACTTGCAGGGTCA
AAGCAGGAGGCACACCTT-GATGGCGCCCCTGGAGTCAAGCTCCTCACAGCTCTTCTTCGACAGCA--------------
-CGTTCGATGTCTACGACTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCCATTACCTGGAACTTCTTA
TGGCAAGCAGAGAAGTTCCAGGAATGCAAAAGAGGCTCGTTGTGTTCATGATGTCCCTGAGGAGGTCCGGGACTGCTGGA
ACAGGCTTTTCTTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGATGATGGAAGCGAGATTTTATCGCATTCCTGC
ATTCTTGTGAGTGCAGTTTTC-TGATTCCCTTCCTGTAACTGCCTCACATTCATTAGAACAGAGGCAGGTTTTAATCTTA
TGTAAGAAGATCTTGATCACGTCTTTTACAGGGCATCAGATCTCCCGTTCTAAGAAGTATGTTGGAAGAAGCTAGAGTGG
AAGATGGTTTCAGAAACATCCTGATTTCTGGTGTCCCATCTGAAGCAGCCCGTGTCTTCATCAGGTTTCTGTATTCTTCA
CGGTATGAATGTGGACTGTATTCTTCATGCCTGAATGTTTATGTTTCTTCGGAGTTTTCAGTATGGTCTTCTTTGACTCA
CACAGTCTAGCCTTG----------ACATTCGTGCCGTTTTCTCTCTGGTGAAGCTTTGAGCAGGATGAGATGAAGAAAT
ATGCCCTCCATTTGCTCGTACTCTCTCATGTTTTCTCGGTACCATCGCTGAAGATCGTCTGCACCGACCAGCTCGAGAGG
TTTTCTCTTGCTCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCGCCAAGGCTCTCGCTCATGTG
TACTCGCATGATCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTCATGAGACGGGCCAACCCAAGCC
TGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTAAAATGGCTTAAT
CACTAGTTACTCCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTATCTATAT-----------------------
---TGTTATGTGTATGATCTTCCACATGACGCACACACTTAGCATGCTTATACCCGCTGTCAGAAAATTTTATAGCTGCA
CATCTACATATTGTCATGGTTCATACTCATCATTCTCACAACTGAATTTGATGCAGAGAAGGCAAGAAAGAGCTAAAAGG
ATGGAGGAAAAGAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCAGAGACGGTTGTAGGAC
GATTGGCCCCTGGGATCAGAAACTGAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTGG
TGCGCCATTTCTCGGCATGCAAAATGCGTGTTCCGCGTGGCTGCTCCAACTGCAAGCGTATGTGGCAGCTTCTTGAGCTG
CATTCGCGAATGTGTTCTACACCGGGCACCTGCAGGGTTCCTCTATGCAGGTGAGGTCTCTTGTCTTTGTTGGCCAGGAT
CATTTCATTCAGACACACAAGTTTTTTAGGTTAATACTACTACGTAGTACAACAGATGTTTGCTTTCATAGCATCTCAGA
ATATATTTTTAGTCCCCATTTTCCAAATGGGGCACCCCCTCCTAGCTTCATCTCCATAAACTGAAGGTAGCTGGACTTAC
CAGACAGAC-------------------AAATATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACAC---
--------CAGATTTCTAGTTGCCTTCC---------TCACTCGCCCACCATATGTTCCACAAAGGAAATTGAACTCAAT
TGACCGCAATAGG-AAATTTACTGCTGTACGCATACCATGCCACTTCTTCAGCATTTCTGTTGTATTCACTTCATTGGTA
TACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATGCGG-CATCGGAGCAAGAAAGAAGAACTCAAATGGGTCCTA
TTGGTGTGTAAGGTCCTAGGGAGTAAAGGAACAATTGATTCCGTCCTAAAAGCGAGAAAAATCTCACCCCTCAAGCCAAT
TGGAGCTTGACGTGTAGTTCGACAGTAATAAC------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3B_314
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGAGGCTCCGGCGACTCCGACCACTCGAGCACG----ATCTCAGGTGAGCACGCAAGCT
TCGATTTGTTCCAATCCCAAGTCCCCTCTCGCGTCTCTCTTCTTCCCCGTCGATTTTCCCTCTCTGATGGTCCCAAGGAC
CTGGGAGCCATGGCTCTTCTTGAGTGAGGAGCTGAAGAATATCTGAGCGGAGAATCATCTGATCAGCTCAAAATTTGACA
ACATTTTAGCAATTCTCGGTTTCTTTTTTCTGGGGAGTGGAAGTCTCATGGAACGCCTCAGAGTTCAGAAATACTAGTCT
GATTCCCTGGTTTATGGCCTC----TGTGATGTTCAGTTGGACAGGAAATTCTTACAATTTCC---TTCAGGGTTCAGGA
GAGAAACA-CATGGATGTAATTCTGTGCATCTTTTCCTTCAACTCACTATTAC----------TAGTATGAAGTAACTTC
TGAAACAC--AGTACTCATTAATTAATTTATTTATTATCTGCTGAAGATATCGAGTAATTAGTAATGAATCACTTGCCTT
ACGTTATGCCTTTGGTTTCTTCTATCTATTTATAACAACTTCTTCCTGAACCTTGCTTCAAAGAAAGTACTACTTGCGCT
GCCGTATGGGCACTACAAAAACTTGAGCAGGTTGTGTTCTCAGCTGTCTTCTCTCTTGATCATTTTGGCCTGCAGGGTCA
AAGCAGGAGGCACACCTTTGATGGCGCCCCTGGAGTCAGGCTCCTCACAACCCTTCTTCGACAGCAGTGCGATCGACGGC
CCGTTCGATATCTACGAGTGCGGTACCTTGGCAGGTACCAGAGTTGTGCCAGATCCACCTCCATTACCTGGAACTTCTTA
TGGCAAGCAGAGAGCTTCCAGGAAAGCAAAAGAGACTCGTTGTGTTC---ATGTCCCTGAGGAGGTCCAGGACTGCTGGA
ACAGGCTATTCTTGGAAGGATATCAAGCCGATGTCCGCGTGTCGACGGATGATGGGAGCGAGATTTTATCGCATTCATGC
ATTCTTGTGAGTACAGTTTTC-TGCCTCTCTTCCTGAAATGGCCTCACACCCACTAGAACAGAGGCAGGTTTTGATCTTA
TGTAAGAAGATCTTGGTCTCGTCTCCTACAGGGCATCAGATCTCCCGTTCTGAGAAGTATGCTGGAAGAAGCTAGAGTGG
AAGATGGTCTCAGAAACATCCTGATTTCCGGTGTACCATCTCAAGCAGTCCGTGTCTTCATCAGATTTCTGTATTCTTCA
CGGTATAAGTGTGAACTGTATTCTTCATGCCTGAATGTTTGTGTTTCTTCAGAGTTTTCAGTATGGTCTCTTCTTTGACC
ACAAGAGATAGCATGACAGAACCTTACATTCATGTCGTTTTCTCTCTTGTGAAGCTTTGAGCAGGATGAGATGAAGAAAT
ACGCCCTTCATTTGCTCGTACTCTCTCATGTTTACTCGGTACAATCTCTGAAGATCGTCTGTACCGACCAGCTCGAGAGG
TTTTTTCTCGCTCCTGATAACGCGGTGGACGTTCTACAACTTGCACGGCTATGTGACGCACCAAGGCTCTCACTCATCTG
TACTCGTATGATCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAACCCGAGCC
TGGAGCAAGAGCTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTATTATGGCTTAAT
CACTAGTTGCTCCACCCCGCAACATCTCGGTTGTTCGAATTACTCGTCTT---------------------------GCT
ATATGTTATGTGTATGATCTTCCACATGACGCACACACCTAGAATGCTTATACCTGCTGACGGAATTTTTG-TAGCTGCA
CATCTACATACTGTCATGGTTCATAATCATTGTTCTCAAAACTGAATTTGACACAGAGAAGGCAAGAAAGAGCTAAAAGG
CTGGAGGAAAAGAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGTTGTAGGAC
AATTGGTCCCTGGGATCAGAAACTGAAGGGCAGTCAGGCTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTGG
TGCGCCATTTCTCGGCATGCAAAATGCGGGTGCCGCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTCTTGAGCTG
CATTCGCGAATGTGTTCCACACCAGGCACCTGCAGGGTTCCTCTGTGCAGGTGAGGTCTCTTGTCTTTGTTGGTCAGGAT
CATTTCATTCAGACACACAAGTTTTTTAGGTTAA---TACTACGTAGTACAACAGATGCTTGCTTTCATACCATCTCAGA
ATATATTTTTAGTCCCTCTTTTCCAAATGGGGCACCCCCTACTAGCTTCATCTCCATAAACTGAAGGTAGGTGGACTTAC
CAGACAGAC-------------------AAACATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACAT---
--------CAGATTTCTAGTTGCCTTCC---------TCACTCACACACCATATGCTCCAGAAAAGAAATTGGACTCAAT
TGACCACAATAGG-AAATTTACTGCTGTACGCATACCATGCCACTTCTTCAGCATTTCTGTTGTATTCCCTTCATTGGTA
TACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATGCGG-CATCGGAGCAAGAAAGAAGAAATCAAATGGGTCCTA
TTGGTGTGTAAGGTCCTAGGGAGTAAAGGAACAATTGATTCCGTCCTAAAAGCGAGAAAAATTTCACCCCTCAAGCCAAT
TGGAGCTTGACGTGTAGTTCGACAGTAATAAC------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3D_2289
--------------------------------------------------------------------------------
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--------------------------------------------------TGTTCATATATGCCGAGACGGATGTAGGAC
GATTGGTCCCTGGGATCAGAAACTCGAGGGCCGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTGG
TGCGTCATTTCTTGGCATGCAAAATGCGGGTGCCGCGTGGCTGCGCCGACTGCAAGCGCATGTGGCAGCTTCTTGAGCTG
CATTCGCGAATGTGTTCCATACCGGGCACCCGCAGGGTTCCTCTATGCAGGTGAGGTCT--TGCCTTTGTTACTTAAGTT
CATTTCATTCAGACACACAAGTGTTTTTTAGGT-----------TACTACAGAAGCTGTTTGCTGTCATCTCCATATGT-
----------------TCTTTTTCAAAAAGGGTG-CCCCTCCCAGCTTCATCTCCATAAGTTGAAGGTGGGGAGCACTTA
CAAACAGATTTGGAGGAACAGTCATAAAAAATATAGCAATTAAAATCCAGAAAAACAGGGAAGAAGATGCTGCACACATA
CACACAAACAGATTTCTAATTGCCTTCCAACTTTTCTTCATTCGTCCACCATATGTCCCACAAAAGAAT---------AT
TGACCACACTAGAAAAAATTACAACAGTACTCATATCATGCCACTTCTTCAACATTTCTGCTATATTCACTTCATTGGTA
TACTAC-TGTACATGTTGCAGGCATTTCAAGGATAAAATGCGGGCATCGGAACAAGCAAGAAGATATCAAATGAAAACTA
TTAGTGTGTAAGGTTCTAGAGAGCCGAGGAACAATCAGTTCAATCCTAAAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>SNPs
------S---------------------S--------SS-----------SSS----------S--SSSSSSSS------
-----------------S--------------------------------------------S-----------------
-S-----S----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS----------------S-S---S----------S-------S--SSSS-SS--SSSS-------------
---------------------------------------SSS-SS---SS-SS-SSSS----------------------
-S-SS---------------S-S--S-------------------------------------------------S----
SS-----------------------------------SS---S---S-S-SSSS------------------S-------
SS----S---------S-------SS----S-----S-----S--------SS-S--SSSSSSSSSSSS--SSS-SSSSS
SSSS-SSSSSS--S-SSSSS-SSSS-----------------------S--------------SSS--------------
------------------------------S--------------------S-------------SS-S-S---------
--------SS---S---------------S--------S-----------------------------------------
---------------------------------------------------------------S--------------S-
---S---------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---------------------------S---S--------S------------S-S-----------S------------
------------------------------------------------SS-----S---S----S-----------S---
--------------------SS-------S----------------------------------------------S---
----------------S----------------------------S------------------------------S-S-
--S-------------------------------------S---------------------------------------
--------------S----S--------------------------------------------------------S--S
------S------------------SSSS--SSS-SSS--S------------------------S------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------SS-----------------------------------------------------------------
------------------------------------------------S-------------------------------
-------S-----------------------------------------SS---S--SSSSSSSSSSSSSSSSSSSS---
-----------S---S------S----------------------------------------------S----------
-------S----------------------------S-------------------------------------------
---------------------------S----------------------------------------------------
------------------------------------------------------------------------------S-
------------------------SS--------S---------------------------------------------
-----S-------------------S------------------------------------------------------
---------S---------------S------------------------------------------------------
-------------S-----------------------------------------------------------------S
-S--------------------------------SS-------------------S---------S-SSS----------
-------------------S---------S-----SS--------------S--S--S--S--S----------------
------------------------SS-----------S------------------------------------SS----
---------------------------------------SS------------------------------------S--
--------------------------S-S-----S--SS------------SS---S----SS---S--S-S-S---S-S
--S-S----S-S-S------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_284
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTCTGCGACAGTGGAGACTC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_1256
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TCTGAGGAGGTCGAGGACTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_296
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGAGACTCAAGGGACCGTTC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_1329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GCGATGGCAGCCAGATCTTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_378
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CAGTCCATCGCTCGTGGAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_2088
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AACTCCACCTCGCAACATCT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_1924
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGCTCTCGCTCATCTG
TACC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_3258
--------------------------------------------------------------------------------
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---------------------------------------------------------TCTTTTAGGGAGCTTGGCGG---
--------------------------------------------------------------------------------
----------------
