Multiple sequence alignment - TraesCS3D01G372900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G372900 chr3D 100.000 4418 0 0 1 4418 486053480 486049063 0.000000e+00 8159.0
1 TraesCS3D01G372900 chr3B 89.895 2276 99 50 1643 3851 648748112 648745901 0.000000e+00 2808.0
2 TraesCS3D01G372900 chr3B 86.594 1641 74 54 1 1569 648750076 648748510 0.000000e+00 1677.0
3 TraesCS3D01G372900 chr3A 85.305 2096 124 65 1715 3723 629229088 629227090 0.000000e+00 1995.0
4 TraesCS3D01G372900 chr3A 93.443 305 15 3 1414 1715 629229722 629229420 8.720000e-122 448.0
5 TraesCS3D01G372900 chr3A 78.909 275 38 16 3877 4136 729164477 729164208 7.600000e-38 169.0
6 TraesCS3D01G372900 chr1A 82.090 268 29 13 3884 4136 472211864 472211601 1.240000e-50 211.0
7 TraesCS3D01G372900 chr1A 94.118 51 3 0 1136 1186 465495883 465495933 1.320000e-10 78.7
8 TraesCS3D01G372900 chr5B 79.730 296 41 15 3871 4153 253366345 253366056 3.490000e-46 196.0
9 TraesCS3D01G372900 chr5B 78.767 292 37 19 3869 4140 704110618 704110904 5.870000e-39 172.0
10 TraesCS3D01G372900 chr5B 78.521 284 32 16 3874 4145 665738355 665738621 4.570000e-35 159.0
11 TraesCS3D01G372900 chr6D 79.655 290 38 17 3871 4144 143496131 143495847 5.830000e-44 189.0
12 TraesCS3D01G372900 chr6B 80.843 261 33 15 3888 4136 41928251 41927996 5.830000e-44 189.0
13 TraesCS3D01G372900 chr2A 80.843 261 32 14 3891 4140 590815543 590815796 5.830000e-44 189.0
14 TraesCS3D01G372900 chr2D 83.673 147 17 5 3885 4028 59169057 59169199 9.970000e-27 132.0
15 TraesCS3D01G372900 chr2D 77.586 232 32 15 3907 4136 467239010 467238797 6.000000e-24 122.0
16 TraesCS3D01G372900 chr2D 80.000 170 22 8 3978 4136 648701989 648702157 1.000000e-21 115.0
17 TraesCS3D01G372900 chr7A 80.447 179 21 10 3973 4138 110890073 110889896 1.670000e-24 124.0
18 TraesCS3D01G372900 chr1D 86.667 75 5 4 1136 1206 366476847 366476774 1.320000e-10 78.7
19 TraesCS3D01G372900 chr1B 83.908 87 9 4 1127 1210 491231287 491231371 1.320000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G372900 chr3D 486049063 486053480 4417 True 8159.0 8159 100.0000 1 4418 1 chr3D.!!$R1 4417
1 TraesCS3D01G372900 chr3B 648745901 648750076 4175 True 2242.5 2808 88.2445 1 3851 2 chr3B.!!$R1 3850
2 TraesCS3D01G372900 chr3A 629227090 629229722 2632 True 1221.5 1995 89.3740 1414 3723 2 chr3A.!!$R2 2309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 148 0.032403 TCGCGACGGGAAAAAGAAGA 59.968 50.0 12.67 0.0 0.00 2.87 F
326 341 0.035056 AAATCTGACCCAAGCCTCGG 60.035 55.0 0.00 0.0 0.00 4.63 F
408 445 0.036765 AACGCTGCCGACCTATGAAA 60.037 50.0 0.00 0.0 38.29 2.69 F
2004 2727 0.249657 GCCTGGATTCCTCGTAGCTG 60.250 60.0 3.95 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 2673 0.861837 AGCGTTTCGACTTTGAGCTG 59.138 50.000 0.00 0.00 31.76 4.24 R
2324 3085 2.159599 GCACCAGCTCAAGAATTCGAAG 60.160 50.000 3.35 0.41 37.91 3.79 R
2526 3298 1.530293 CAGATAGGATGCAAAGCGAGC 59.470 52.381 0.00 0.00 0.00 5.03 R
3835 4720 0.038526 GCTGCTAATCCATGCCATGC 60.039 55.000 0.00 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 129 7.797121 AACTACCCAAGGAAATGATCAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
122 132 4.114794 CCCAAGGAAATGATCAAAATCGC 58.885 43.478 0.00 0.00 34.39 4.58
134 144 1.976045 CAAAATCGCGACGGGAAAAAG 59.024 47.619 18.98 6.11 0.00 2.27
135 145 1.515081 AAATCGCGACGGGAAAAAGA 58.485 45.000 18.98 0.00 0.00 2.52
136 146 1.515081 AATCGCGACGGGAAAAAGAA 58.485 45.000 18.98 0.00 0.00 2.52
137 147 1.076332 ATCGCGACGGGAAAAAGAAG 58.924 50.000 18.98 0.00 0.00 2.85
138 148 0.032403 TCGCGACGGGAAAAAGAAGA 59.968 50.000 12.67 0.00 0.00 2.87
148 163 5.421056 ACGGGAAAAAGAAGAAAAGAAAGGT 59.579 36.000 0.00 0.00 0.00 3.50
157 172 6.903419 AGAAGAAAAGAAAGGTAGCGAAATG 58.097 36.000 0.00 0.00 0.00 2.32
181 196 0.037697 AAGCACGCTCCACATAACGA 60.038 50.000 0.00 0.00 0.00 3.85
195 210 0.809385 TAACGAACTGCTCCTCCTCG 59.191 55.000 0.00 0.00 35.68 4.63
196 211 1.179814 AACGAACTGCTCCTCCTCGT 61.180 55.000 0.00 0.00 44.08 4.18
250 265 3.621892 AACCACGTACGCGCTCCTC 62.622 63.158 16.72 0.00 42.83 3.71
312 327 7.324178 CAAGTAGTGGAGCAGTAAGTAAATCT 58.676 38.462 0.00 0.00 0.00 2.40
318 333 4.081087 GGAGCAGTAAGTAAATCTGACCCA 60.081 45.833 0.00 0.00 0.00 4.51
319 334 5.488341 GAGCAGTAAGTAAATCTGACCCAA 58.512 41.667 0.00 0.00 0.00 4.12
321 336 4.095036 GCAGTAAGTAAATCTGACCCAAGC 59.905 45.833 0.00 0.00 0.00 4.01
322 337 4.636206 CAGTAAGTAAATCTGACCCAAGCC 59.364 45.833 0.00 0.00 0.00 4.35
323 338 4.536489 AGTAAGTAAATCTGACCCAAGCCT 59.464 41.667 0.00 0.00 0.00 4.58
324 339 3.636153 AGTAAATCTGACCCAAGCCTC 57.364 47.619 0.00 0.00 0.00 4.70
325 340 2.093447 AGTAAATCTGACCCAAGCCTCG 60.093 50.000 0.00 0.00 0.00 4.63
326 341 0.035056 AAATCTGACCCAAGCCTCGG 60.035 55.000 0.00 0.00 0.00 4.63
327 342 2.543067 AATCTGACCCAAGCCTCGGC 62.543 60.000 0.00 0.00 42.33 5.54
353 390 3.246226 CAGATAATACAACACGAGGCTGC 59.754 47.826 0.00 0.00 0.00 5.25
376 413 4.709982 CGAGCGACATCGAATGGA 57.290 55.556 5.26 0.00 45.56 3.41
377 414 3.185651 CGAGCGACATCGAATGGAT 57.814 52.632 5.26 0.00 45.56 3.41
403 440 2.292794 GATCCAACGCTGCCGACCTA 62.293 60.000 0.00 0.00 38.29 3.08
404 441 1.686325 ATCCAACGCTGCCGACCTAT 61.686 55.000 0.00 0.00 38.29 2.57
408 445 0.036765 AACGCTGCCGACCTATGAAA 60.037 50.000 0.00 0.00 38.29 2.69
409 446 0.739813 ACGCTGCCGACCTATGAAAC 60.740 55.000 0.00 0.00 38.29 2.78
410 447 0.460284 CGCTGCCGACCTATGAAACT 60.460 55.000 0.00 0.00 36.29 2.66
411 448 1.009829 GCTGCCGACCTATGAAACTG 58.990 55.000 0.00 0.00 0.00 3.16
412 449 1.676014 GCTGCCGACCTATGAAACTGT 60.676 52.381 0.00 0.00 0.00 3.55
413 450 2.002586 CTGCCGACCTATGAAACTGTG 58.997 52.381 0.00 0.00 0.00 3.66
414 451 1.346395 TGCCGACCTATGAAACTGTGT 59.654 47.619 0.00 0.00 0.00 3.72
415 452 1.732259 GCCGACCTATGAAACTGTGTG 59.268 52.381 0.00 0.00 0.00 3.82
444 484 3.560278 GCATTGGCGACCGTACGG 61.560 66.667 32.22 32.22 42.03 4.02
469 511 3.948719 TTCACACCGGGGACTGCC 61.949 66.667 12.96 0.00 0.00 4.85
480 522 0.912486 GGGACTGCCTGGAATGTACT 59.088 55.000 0.00 0.00 0.00 2.73
485 527 4.038162 GGACTGCCTGGAATGTACTAGTAG 59.962 50.000 1.87 0.00 0.00 2.57
487 529 5.763355 ACTGCCTGGAATGTACTAGTAGTA 58.237 41.667 5.90 5.90 0.00 1.82
489 531 5.138276 TGCCTGGAATGTACTAGTAGTAGG 58.862 45.833 10.38 9.14 30.12 3.18
490 532 4.022155 GCCTGGAATGTACTAGTAGTAGGC 60.022 50.000 17.90 17.90 30.12 3.93
491 533 5.386924 CCTGGAATGTACTAGTAGTAGGCT 58.613 45.833 10.38 0.00 30.12 4.58
492 534 6.540995 CCTGGAATGTACTAGTAGTAGGCTA 58.459 44.000 10.38 0.00 30.12 3.93
495 537 8.267620 TGGAATGTACTAGTAGTAGGCTAGTA 57.732 38.462 10.38 4.95 44.98 1.82
501 543 2.496111 AGTAGTAGGCTAGTAGCAGCG 58.504 52.381 23.24 0.00 44.75 5.18
512 554 1.204941 AGTAGCAGCGTAAGTGGAAGG 59.795 52.381 0.00 0.00 41.68 3.46
542 584 6.647895 TGAATTACCAAGAGACCTTCGTTAAC 59.352 38.462 0.00 0.00 0.00 2.01
544 586 6.899393 TTACCAAGAGACCTTCGTTAACTA 57.101 37.500 3.71 0.00 0.00 2.24
579 621 1.402325 GGGGTAAAACTCGCACATTGC 60.402 52.381 0.00 0.00 40.69 3.56
582 624 2.979813 GGTAAAACTCGCACATTGCTTG 59.020 45.455 0.00 0.00 42.25 4.01
649 691 7.121974 TCTTCAGAAAAATAAACGAGAGCAG 57.878 36.000 0.00 0.00 0.00 4.24
650 692 6.929049 TCTTCAGAAAAATAAACGAGAGCAGA 59.071 34.615 0.00 0.00 0.00 4.26
651 693 6.712241 TCAGAAAAATAAACGAGAGCAGAG 57.288 37.500 0.00 0.00 0.00 3.35
652 694 5.639506 TCAGAAAAATAAACGAGAGCAGAGG 59.360 40.000 0.00 0.00 0.00 3.69
653 695 5.639506 CAGAAAAATAAACGAGAGCAGAGGA 59.360 40.000 0.00 0.00 0.00 3.71
654 696 5.872070 AGAAAAATAAACGAGAGCAGAGGAG 59.128 40.000 0.00 0.00 0.00 3.69
655 697 3.810310 AATAAACGAGAGCAGAGGAGG 57.190 47.619 0.00 0.00 0.00 4.30
656 698 1.475403 TAAACGAGAGCAGAGGAGGG 58.525 55.000 0.00 0.00 0.00 4.30
657 699 0.251832 AAACGAGAGCAGAGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
658 700 0.968393 AACGAGAGCAGAGGAGGGAC 60.968 60.000 0.00 0.00 0.00 4.46
659 701 2.477176 CGAGAGCAGAGGAGGGACG 61.477 68.421 0.00 0.00 0.00 4.79
660 702 1.077357 GAGAGCAGAGGAGGGACGA 60.077 63.158 0.00 0.00 0.00 4.20
661 703 1.077068 AGAGCAGAGGAGGGACGAG 60.077 63.158 0.00 0.00 0.00 4.18
662 704 2.043450 AGCAGAGGAGGGACGAGG 60.043 66.667 0.00 0.00 0.00 4.63
663 705 3.844090 GCAGAGGAGGGACGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
666 708 1.104577 CAGAGGAGGGACGAGGCTAC 61.105 65.000 0.00 0.00 0.00 3.58
724 766 4.084849 CGAACATCTCATGACGGCTATTTC 60.085 45.833 0.00 0.00 33.23 2.17
762 811 7.500559 TCTTTCTTTCTCTTTCTCCCTTTCTTG 59.499 37.037 0.00 0.00 0.00 3.02
770 819 1.421268 TCTCCCTTTCTTGCTTGCTGA 59.579 47.619 0.00 0.00 0.00 4.26
771 820 2.040813 TCTCCCTTTCTTGCTTGCTGAT 59.959 45.455 0.00 0.00 0.00 2.90
772 821 2.824341 CTCCCTTTCTTGCTTGCTGATT 59.176 45.455 0.00 0.00 0.00 2.57
804 853 4.183686 GTACGTGCTCCGCCGCTA 62.184 66.667 0.00 0.00 41.42 4.26
848 899 2.477880 CCCCCGGAAATGTTCGAAG 58.522 57.895 0.73 0.00 0.00 3.79
877 928 6.802348 TGAACGAAATTAAACGAGAGAGAGAG 59.198 38.462 0.00 0.00 0.00 3.20
878 929 6.497785 ACGAAATTAAACGAGAGAGAGAGA 57.502 37.500 0.00 0.00 0.00 3.10
879 930 6.548171 ACGAAATTAAACGAGAGAGAGAGAG 58.452 40.000 0.00 0.00 0.00 3.20
880 931 6.149807 ACGAAATTAAACGAGAGAGAGAGAGT 59.850 38.462 0.00 0.00 0.00 3.24
881 932 6.467682 CGAAATTAAACGAGAGAGAGAGAGTG 59.532 42.308 0.00 0.00 0.00 3.51
882 933 7.455641 AAATTAAACGAGAGAGAGAGAGTGA 57.544 36.000 0.00 0.00 0.00 3.41
883 934 6.677781 ATTAAACGAGAGAGAGAGAGTGAG 57.322 41.667 0.00 0.00 0.00 3.51
884 935 3.973206 AACGAGAGAGAGAGAGTGAGA 57.027 47.619 0.00 0.00 0.00 3.27
885 936 3.526931 ACGAGAGAGAGAGAGTGAGAG 57.473 52.381 0.00 0.00 0.00 3.20
894 945 5.010112 AGAGAGAGAGTGAGAGAGATCGTAG 59.990 48.000 0.00 0.00 0.00 3.51
919 970 2.179517 CAGCCTCACGACGACTCC 59.820 66.667 0.00 0.00 0.00 3.85
948 999 4.502087 GCTCTGCCATTTGAAAAGAAAGGT 60.502 41.667 0.00 0.00 0.00 3.50
949 1000 5.604565 CTCTGCCATTTGAAAAGAAAGGTT 58.395 37.500 0.00 0.00 0.00 3.50
950 1001 5.600696 TCTGCCATTTGAAAAGAAAGGTTC 58.399 37.500 0.00 0.00 0.00 3.62
951 1002 4.367450 TGCCATTTGAAAAGAAAGGTTCG 58.633 39.130 0.00 0.00 34.02 3.95
956 1007 2.858745 TGAAAAGAAAGGTTCGGAGGG 58.141 47.619 0.00 0.00 34.02 4.30
957 1008 2.440253 TGAAAAGAAAGGTTCGGAGGGA 59.560 45.455 0.00 0.00 34.02 4.20
958 1009 2.861147 AAAGAAAGGTTCGGAGGGAG 57.139 50.000 0.00 0.00 34.02 4.30
959 1010 0.984995 AAGAAAGGTTCGGAGGGAGG 59.015 55.000 0.00 0.00 34.02 4.30
960 1011 1.078356 GAAAGGTTCGGAGGGAGGC 60.078 63.158 0.00 0.00 0.00 4.70
961 1012 2.854187 GAAAGGTTCGGAGGGAGGCG 62.854 65.000 0.00 0.00 0.00 5.52
964 1015 4.821589 GTTCGGAGGGAGGCGCTG 62.822 72.222 7.64 0.00 0.00 5.18
1070 1121 4.047059 GACGGTGAAGGGCGACGA 62.047 66.667 0.00 0.00 0.00 4.20
1071 1122 4.353437 ACGGTGAAGGGCGACGAC 62.353 66.667 0.00 0.00 0.00 4.34
1385 1449 2.923121 CTATTGAAGCTAGCTTGGCCA 58.077 47.619 33.91 22.08 36.26 5.36
1402 1466 2.614229 GGCCAGGAAGAGTTTCTGAGTC 60.614 54.545 0.00 0.00 33.68 3.36
1459 1523 4.116328 CCGAGCTTCTCCGCACGA 62.116 66.667 4.31 0.00 44.79 4.35
1633 1751 5.050091 GTCTATATCCATCGGTGCAAAACAG 60.050 44.000 0.00 0.00 0.00 3.16
1791 2511 5.669477 AGCTCTGATCAGGTCATAAAGAAC 58.331 41.667 22.42 0.00 35.97 3.01
1809 2529 1.317613 ACCGGTGAACACGTGTACTA 58.682 50.000 23.69 8.52 0.00 1.82
1969 2692 0.861837 CAGCTCAAAGTCGAAACGCT 59.138 50.000 0.00 0.00 0.00 5.07
1999 2722 4.162690 GGCGCCTGGATTCCTCGT 62.163 66.667 22.15 0.00 0.00 4.18
2000 2723 2.792947 GGCGCCTGGATTCCTCGTA 61.793 63.158 22.15 0.00 0.00 3.43
2001 2724 1.300233 GCGCCTGGATTCCTCGTAG 60.300 63.158 3.95 0.00 0.00 3.51
2002 2725 1.300233 CGCCTGGATTCCTCGTAGC 60.300 63.158 3.95 0.00 0.00 3.58
2003 2726 1.739338 CGCCTGGATTCCTCGTAGCT 61.739 60.000 3.95 0.00 0.00 3.32
2004 2727 0.249657 GCCTGGATTCCTCGTAGCTG 60.250 60.000 3.95 0.00 0.00 4.24
2005 2728 1.115467 CCTGGATTCCTCGTAGCTGT 58.885 55.000 3.95 0.00 0.00 4.40
2006 2729 1.067821 CCTGGATTCCTCGTAGCTGTC 59.932 57.143 3.95 0.00 0.00 3.51
2187 2931 2.238942 ACAGTGCATCTTCGTGTCAA 57.761 45.000 0.00 0.00 0.00 3.18
2191 2935 3.366121 CAGTGCATCTTCGTGTCAAGTAG 59.634 47.826 0.00 0.00 0.00 2.57
2193 2937 2.560981 TGCATCTTCGTGTCAAGTAGGA 59.439 45.455 0.00 0.00 0.00 2.94
2411 3179 8.462016 CCTTCCAGTTCACATTCCTAAATTTAG 58.538 37.037 16.90 16.90 0.00 1.85
2465 3233 0.729140 CACCTTGCAAATCGCGTTCC 60.729 55.000 5.77 0.00 46.97 3.62
2526 3298 4.389576 GGAACACGCTTGCGCTGG 62.390 66.667 15.21 7.56 0.00 4.85
2539 3311 2.101770 GCTGGCTCGCTTTGCATC 59.898 61.111 0.00 0.00 0.00 3.91
2542 3314 0.462581 CTGGCTCGCTTTGCATCCTA 60.463 55.000 0.00 0.00 0.00 2.94
2551 3323 3.547613 CGCTTTGCATCCTATCTGCTTTC 60.548 47.826 0.00 0.00 40.34 2.62
2556 3334 2.615912 GCATCCTATCTGCTTTCGCTTT 59.384 45.455 0.00 0.00 36.68 3.51
2687 3504 4.955774 GGCGTCGTCCAACGTGGT 62.956 66.667 0.00 0.00 44.38 4.16
3135 3964 1.815196 CGGAGTCATGAGCAGCTCT 59.185 57.895 23.15 6.28 0.00 4.09
3147 3976 3.470888 AGCTCTTATGGCGGCGGT 61.471 61.111 9.78 0.00 34.52 5.68
3148 3977 3.272334 GCTCTTATGGCGGCGGTG 61.272 66.667 9.78 0.00 0.00 4.94
3149 3978 3.272334 CTCTTATGGCGGCGGTGC 61.272 66.667 9.78 0.00 0.00 5.01
3210 4048 2.678934 TTCCCGTCCTCCTCCGTG 60.679 66.667 0.00 0.00 0.00 4.94
3240 4078 3.827898 GTGCCGTCCTCCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
3493 4340 7.333672 GGAAGAAAGAATAAGTTGTGTACGGAT 59.666 37.037 0.00 0.00 0.00 4.18
3534 4381 2.759783 GCAGCAAGCAGAAGATCGA 58.240 52.632 0.00 0.00 44.79 3.59
3535 4382 0.651551 GCAGCAAGCAGAAGATCGAG 59.348 55.000 0.00 0.00 44.79 4.04
3536 4383 1.738365 GCAGCAAGCAGAAGATCGAGA 60.738 52.381 0.00 0.00 44.79 4.04
3537 4384 2.614779 CAGCAAGCAGAAGATCGAGAA 58.385 47.619 0.00 0.00 0.00 2.87
3538 4385 2.998670 CAGCAAGCAGAAGATCGAGAAA 59.001 45.455 0.00 0.00 0.00 2.52
3539 4386 3.434641 CAGCAAGCAGAAGATCGAGAAAA 59.565 43.478 0.00 0.00 0.00 2.29
3540 4387 4.067896 AGCAAGCAGAAGATCGAGAAAAA 58.932 39.130 0.00 0.00 0.00 1.94
3610 4469 4.284829 TGTGTTGATTGACAGCTATGGA 57.715 40.909 0.00 0.00 0.00 3.41
3650 4509 5.933463 TCGTTCGTTGATTATTAGTTTGGGT 59.067 36.000 0.00 0.00 0.00 4.51
3656 4515 4.605183 TGATTATTAGTTTGGGTGGTGGG 58.395 43.478 0.00 0.00 0.00 4.61
3711 4573 8.983724 TGTTTTGGTTATTACTGCAAATTAAGC 58.016 29.630 0.00 0.00 0.00 3.09
3712 4574 7.804614 TTTGGTTATTACTGCAAATTAAGCG 57.195 32.000 0.00 0.00 33.85 4.68
3715 4577 7.247728 TGGTTATTACTGCAAATTAAGCGAAG 58.752 34.615 0.00 0.00 33.85 3.79
3716 4578 7.119992 TGGTTATTACTGCAAATTAAGCGAAGA 59.880 33.333 0.00 0.00 33.85 2.87
3720 4582 7.795431 TTACTGCAAATTAAGCGAAGAAATG 57.205 32.000 0.00 0.00 33.85 2.32
3724 4586 4.800471 GCAAATTAAGCGAAGAAATGGAGG 59.200 41.667 0.00 0.00 0.00 4.30
3725 4587 5.622233 GCAAATTAAGCGAAGAAATGGAGGT 60.622 40.000 0.00 0.00 0.00 3.85
3736 4621 6.183360 CGAAGAAATGGAGGTTTGGATACTTC 60.183 42.308 0.00 0.00 37.61 3.01
3737 4622 6.139679 AGAAATGGAGGTTTGGATACTTCA 57.860 37.500 0.00 0.00 37.61 3.02
3747 4632 3.788116 TGGATACTTCAGGGGAGGTTA 57.212 47.619 0.00 0.00 34.80 2.85
3754 4639 3.916989 ACTTCAGGGGAGGTTAAATCAGT 59.083 43.478 0.00 0.00 27.15 3.41
3758 4643 3.264450 CAGGGGAGGTTAAATCAGTGTCT 59.736 47.826 0.00 0.00 0.00 3.41
3767 4652 6.265422 AGGTTAAATCAGTGTCTTTTGGGAAG 59.735 38.462 0.00 0.00 0.00 3.46
3768 4653 4.590850 AAATCAGTGTCTTTTGGGAAGC 57.409 40.909 0.00 0.00 0.00 3.86
3769 4654 3.515602 ATCAGTGTCTTTTGGGAAGCT 57.484 42.857 0.00 0.00 0.00 3.74
3771 4656 3.631250 TCAGTGTCTTTTGGGAAGCTTT 58.369 40.909 0.00 0.00 0.00 3.51
3773 4658 5.197451 TCAGTGTCTTTTGGGAAGCTTTAA 58.803 37.500 0.00 0.00 0.00 1.52
3774 4659 5.833131 TCAGTGTCTTTTGGGAAGCTTTAAT 59.167 36.000 0.00 0.00 0.00 1.40
3775 4660 6.016276 TCAGTGTCTTTTGGGAAGCTTTAATC 60.016 38.462 0.00 0.00 0.00 1.75
3776 4661 5.048713 AGTGTCTTTTGGGAAGCTTTAATCG 60.049 40.000 0.00 0.00 0.00 3.34
3780 4665 4.759516 TTTGGGAAGCTTTAATCGTGTC 57.240 40.909 0.00 0.00 0.00 3.67
3781 4666 2.343101 TGGGAAGCTTTAATCGTGTCG 58.657 47.619 0.00 0.00 0.00 4.35
3782 4667 2.289195 TGGGAAGCTTTAATCGTGTCGT 60.289 45.455 0.00 0.00 0.00 4.34
3783 4668 2.740447 GGGAAGCTTTAATCGTGTCGTT 59.260 45.455 0.00 0.00 0.00 3.85
3784 4669 3.187842 GGGAAGCTTTAATCGTGTCGTTT 59.812 43.478 0.00 0.00 0.00 3.60
3785 4670 4.148891 GGAAGCTTTAATCGTGTCGTTTG 58.851 43.478 0.00 0.00 0.00 2.93
3786 4671 3.806316 AGCTTTAATCGTGTCGTTTGG 57.194 42.857 0.00 0.00 0.00 3.28
3787 4672 2.482721 AGCTTTAATCGTGTCGTTTGGG 59.517 45.455 0.00 0.00 0.00 4.12
3788 4673 2.481185 GCTTTAATCGTGTCGTTTGGGA 59.519 45.455 0.00 0.00 0.00 4.37
3789 4674 3.058777 GCTTTAATCGTGTCGTTTGGGAA 60.059 43.478 0.00 0.00 0.00 3.97
3790 4675 4.555116 GCTTTAATCGTGTCGTTTGGGAAA 60.555 41.667 0.00 0.00 0.00 3.13
3791 4676 5.496133 TTTAATCGTGTCGTTTGGGAAAA 57.504 34.783 0.00 0.00 0.00 2.29
3792 4677 5.496133 TTAATCGTGTCGTTTGGGAAAAA 57.504 34.783 0.00 0.00 0.00 1.94
3793 4678 4.577834 AATCGTGTCGTTTGGGAAAAAT 57.422 36.364 0.00 0.00 0.00 1.82
3794 4679 5.692613 AATCGTGTCGTTTGGGAAAAATA 57.307 34.783 0.00 0.00 0.00 1.40
3795 4680 5.692613 ATCGTGTCGTTTGGGAAAAATAA 57.307 34.783 0.00 0.00 0.00 1.40
3796 4681 5.692613 TCGTGTCGTTTGGGAAAAATAAT 57.307 34.783 0.00 0.00 0.00 1.28
3797 4682 5.453648 TCGTGTCGTTTGGGAAAAATAATG 58.546 37.500 0.00 0.00 0.00 1.90
3798 4683 5.008811 TCGTGTCGTTTGGGAAAAATAATGT 59.991 36.000 0.00 0.00 0.00 2.71
3803 4688 5.694006 TCGTTTGGGAAAAATAATGTTGCTG 59.306 36.000 0.00 0.00 0.00 4.41
3805 4690 3.583806 TGGGAAAAATAATGTTGCTGCG 58.416 40.909 0.00 0.00 0.00 5.18
3807 4692 4.218635 TGGGAAAAATAATGTTGCTGCGTA 59.781 37.500 0.00 0.00 0.00 4.42
3810 4695 6.265577 GGAAAAATAATGTTGCTGCGTAGAT 58.734 36.000 4.08 0.00 0.00 1.98
3821 4706 2.348666 GCTGCGTAGATTTGTAGTGTGG 59.651 50.000 4.08 0.00 0.00 4.17
3825 4710 3.858238 GCGTAGATTTGTAGTGTGGTCTC 59.142 47.826 0.00 0.00 0.00 3.36
3826 4711 4.380655 GCGTAGATTTGTAGTGTGGTCTCT 60.381 45.833 0.00 0.00 0.00 3.10
3827 4712 5.163683 GCGTAGATTTGTAGTGTGGTCTCTA 60.164 44.000 0.00 0.00 0.00 2.43
3835 4720 3.393089 AGTGTGGTCTCTACTGCAAAG 57.607 47.619 0.00 0.00 0.00 2.77
3851 4736 2.750948 CAAAGCATGGCATGGATTAGC 58.249 47.619 27.48 12.94 0.00 3.09
3852 4737 2.076207 AAGCATGGCATGGATTAGCA 57.924 45.000 27.48 0.00 0.00 3.49
3853 4738 1.617322 AGCATGGCATGGATTAGCAG 58.383 50.000 27.48 0.36 0.00 4.24
3854 4739 0.038526 GCATGGCATGGATTAGCAGC 60.039 55.000 27.48 7.23 0.00 5.25
3855 4740 1.617322 CATGGCATGGATTAGCAGCT 58.383 50.000 19.80 0.00 0.00 4.24
3856 4741 1.540267 CATGGCATGGATTAGCAGCTC 59.460 52.381 19.80 0.00 0.00 4.09
3857 4742 0.179009 TGGCATGGATTAGCAGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
3858 4743 1.233285 GGCATGGATTAGCAGCTCCG 61.233 60.000 0.00 0.00 34.05 4.63
3859 4744 0.250038 GCATGGATTAGCAGCTCCGA 60.250 55.000 0.00 0.00 34.05 4.55
3860 4745 1.610102 GCATGGATTAGCAGCTCCGAT 60.610 52.381 0.00 0.00 34.05 4.18
3861 4746 2.344950 CATGGATTAGCAGCTCCGATC 58.655 52.381 0.00 1.31 34.05 3.69
3862 4747 0.315251 TGGATTAGCAGCTCCGATCG 59.685 55.000 8.51 8.51 34.05 3.69
3863 4748 0.598562 GGATTAGCAGCTCCGATCGA 59.401 55.000 18.66 1.60 0.00 3.59
3864 4749 1.203523 GGATTAGCAGCTCCGATCGAT 59.796 52.381 18.66 0.00 0.00 3.59
3865 4750 2.353208 GGATTAGCAGCTCCGATCGATT 60.353 50.000 18.66 0.00 0.00 3.34
3866 4751 2.890808 TTAGCAGCTCCGATCGATTT 57.109 45.000 18.66 0.00 0.00 2.17
3867 4752 2.890808 TAGCAGCTCCGATCGATTTT 57.109 45.000 18.66 0.00 0.00 1.82
3868 4753 2.029838 AGCAGCTCCGATCGATTTTT 57.970 45.000 18.66 0.00 0.00 1.94
3869 4754 3.179443 AGCAGCTCCGATCGATTTTTA 57.821 42.857 18.66 0.00 0.00 1.52
3870 4755 3.733337 AGCAGCTCCGATCGATTTTTAT 58.267 40.909 18.66 0.00 0.00 1.40
3871 4756 4.130118 AGCAGCTCCGATCGATTTTTATT 58.870 39.130 18.66 0.00 0.00 1.40
3872 4757 5.297547 AGCAGCTCCGATCGATTTTTATTA 58.702 37.500 18.66 0.00 0.00 0.98
3873 4758 5.406780 AGCAGCTCCGATCGATTTTTATTAG 59.593 40.000 18.66 0.00 0.00 1.73
3874 4759 5.389935 GCAGCTCCGATCGATTTTTATTAGG 60.390 44.000 18.66 0.00 0.00 2.69
3875 4760 5.926542 CAGCTCCGATCGATTTTTATTAGGA 59.073 40.000 18.66 0.00 0.00 2.94
3876 4761 6.423905 CAGCTCCGATCGATTTTTATTAGGAA 59.576 38.462 18.66 0.00 0.00 3.36
3877 4762 7.118390 CAGCTCCGATCGATTTTTATTAGGAAT 59.882 37.037 18.66 0.00 0.00 3.01
3878 4763 7.118390 AGCTCCGATCGATTTTTATTAGGAATG 59.882 37.037 18.66 0.00 0.00 2.67
3879 4764 7.095187 GCTCCGATCGATTTTTATTAGGAATGT 60.095 37.037 18.66 0.00 0.00 2.71
3880 4765 9.419297 CTCCGATCGATTTTTATTAGGAATGTA 57.581 33.333 18.66 0.00 0.00 2.29
3881 4766 9.938280 TCCGATCGATTTTTATTAGGAATGTAT 57.062 29.630 18.66 0.00 0.00 2.29
3882 4767 9.973246 CCGATCGATTTTTATTAGGAATGTATG 57.027 33.333 18.66 0.00 0.00 2.39
3898 4783 9.264653 AGGAATGTATGATGATGCTATCTTAGA 57.735 33.333 0.00 0.00 0.00 2.10
3899 4784 9.881649 GGAATGTATGATGATGCTATCTTAGAA 57.118 33.333 0.00 0.00 0.00 2.10
3902 4787 9.872721 ATGTATGATGATGCTATCTTAGAAGTG 57.127 33.333 0.00 0.00 0.00 3.16
3903 4788 8.864087 TGTATGATGATGCTATCTTAGAAGTGT 58.136 33.333 0.00 0.00 0.00 3.55
3904 4789 9.352784 GTATGATGATGCTATCTTAGAAGTGTC 57.647 37.037 0.00 0.00 0.00 3.67
3905 4790 7.352079 TGATGATGCTATCTTAGAAGTGTCA 57.648 36.000 0.00 0.00 0.00 3.58
3906 4791 7.960262 TGATGATGCTATCTTAGAAGTGTCAT 58.040 34.615 0.00 1.06 0.00 3.06
3907 4792 7.871463 TGATGATGCTATCTTAGAAGTGTCATG 59.129 37.037 12.72 0.00 0.00 3.07
3908 4793 7.117285 TGATGCTATCTTAGAAGTGTCATGT 57.883 36.000 0.00 0.00 0.00 3.21
3909 4794 8.237811 TGATGCTATCTTAGAAGTGTCATGTA 57.762 34.615 0.00 0.00 0.00 2.29
3910 4795 8.355913 TGATGCTATCTTAGAAGTGTCATGTAG 58.644 37.037 0.00 0.00 0.00 2.74
3911 4796 7.043961 TGCTATCTTAGAAGTGTCATGTAGG 57.956 40.000 0.00 0.00 0.00 3.18
3912 4797 6.833933 TGCTATCTTAGAAGTGTCATGTAGGA 59.166 38.462 0.00 0.00 0.00 2.94
3913 4798 7.507277 TGCTATCTTAGAAGTGTCATGTAGGAT 59.493 37.037 0.00 0.00 0.00 3.24
3914 4799 9.015367 GCTATCTTAGAAGTGTCATGTAGGATA 57.985 37.037 0.00 0.00 0.00 2.59
3930 4815 6.219417 GTAGGATACATGATGAGATGGAGG 57.781 45.833 0.00 0.00 42.43 4.30
3931 4816 5.020941 AGGATACATGATGAGATGGAGGA 57.979 43.478 0.00 0.00 41.41 3.71
3932 4817 5.024785 AGGATACATGATGAGATGGAGGAG 58.975 45.833 0.00 0.00 41.41 3.69
3933 4818 4.161942 GGATACATGATGAGATGGAGGAGG 59.838 50.000 0.00 0.00 0.00 4.30
3934 4819 3.341318 ACATGATGAGATGGAGGAGGA 57.659 47.619 0.00 0.00 0.00 3.71
3935 4820 3.662078 ACATGATGAGATGGAGGAGGAA 58.338 45.455 0.00 0.00 0.00 3.36
3936 4821 3.647113 ACATGATGAGATGGAGGAGGAAG 59.353 47.826 0.00 0.00 0.00 3.46
3937 4822 3.695357 TGATGAGATGGAGGAGGAAGA 57.305 47.619 0.00 0.00 0.00 2.87
3938 4823 3.999603 TGATGAGATGGAGGAGGAAGAA 58.000 45.455 0.00 0.00 0.00 2.52
3939 4824 3.708631 TGATGAGATGGAGGAGGAAGAAC 59.291 47.826 0.00 0.00 0.00 3.01
3940 4825 3.481559 TGAGATGGAGGAGGAAGAACT 57.518 47.619 0.00 0.00 0.00 3.01
3941 4826 3.370104 TGAGATGGAGGAGGAAGAACTC 58.630 50.000 0.00 0.00 36.76 3.01
3942 4827 3.245766 TGAGATGGAGGAGGAAGAACTCA 60.246 47.826 0.00 0.00 39.27 3.41
3943 4828 3.966665 GAGATGGAGGAGGAAGAACTCAT 59.033 47.826 0.00 0.00 39.27 2.90
3944 4829 5.144100 GAGATGGAGGAGGAAGAACTCATA 58.856 45.833 0.00 0.00 39.27 2.15
3945 4830 4.898861 AGATGGAGGAGGAAGAACTCATAC 59.101 45.833 0.00 0.00 39.27 2.39
3946 4831 4.338795 TGGAGGAGGAAGAACTCATACT 57.661 45.455 0.00 0.00 39.27 2.12
3947 4832 5.467668 TGGAGGAGGAAGAACTCATACTA 57.532 43.478 0.00 0.00 39.27 1.82
3948 4833 5.838955 TGGAGGAGGAAGAACTCATACTAA 58.161 41.667 0.00 0.00 39.27 2.24
3949 4834 5.894393 TGGAGGAGGAAGAACTCATACTAAG 59.106 44.000 0.00 0.00 39.27 2.18
3950 4835 6.130569 GGAGGAGGAAGAACTCATACTAAGA 58.869 44.000 0.00 0.00 39.27 2.10
3951 4836 6.040054 GGAGGAGGAAGAACTCATACTAAGAC 59.960 46.154 0.00 0.00 39.27 3.01
3952 4837 6.494952 AGGAGGAAGAACTCATACTAAGACA 58.505 40.000 0.00 0.00 39.27 3.41
3953 4838 6.605594 AGGAGGAAGAACTCATACTAAGACAG 59.394 42.308 0.00 0.00 39.27 3.51
3954 4839 6.603997 GGAGGAAGAACTCATACTAAGACAGA 59.396 42.308 0.00 0.00 39.27 3.41
3955 4840 7.399245 AGGAAGAACTCATACTAAGACAGAC 57.601 40.000 0.00 0.00 0.00 3.51
3956 4841 7.179269 AGGAAGAACTCATACTAAGACAGACT 58.821 38.462 0.00 0.00 0.00 3.24
3957 4842 7.672239 AGGAAGAACTCATACTAAGACAGACTT 59.328 37.037 0.00 0.00 42.04 3.01
3958 4843 7.757624 GGAAGAACTCATACTAAGACAGACTTG 59.242 40.741 0.00 0.00 39.38 3.16
3959 4844 7.768807 AGAACTCATACTAAGACAGACTTGT 57.231 36.000 0.00 0.00 41.18 3.16
4001 4886 9.905171 AAAGAAAACAAGAGATGATCTTTTAGC 57.095 29.630 0.00 0.00 46.49 3.09
4002 4887 8.627208 AGAAAACAAGAGATGATCTTTTAGCA 57.373 30.769 0.00 0.00 46.49 3.49
4003 4888 9.240734 AGAAAACAAGAGATGATCTTTTAGCAT 57.759 29.630 0.00 0.00 46.49 3.79
4008 4893 9.624373 ACAAGAGATGATCTTTTAGCATAATGT 57.376 29.630 0.00 0.00 46.49 2.71
4011 4896 9.709495 AGAGATGATCTTTTAGCATAATGTCTC 57.291 33.333 0.00 0.00 33.33 3.36
4012 4897 9.486497 GAGATGATCTTTTAGCATAATGTCTCA 57.514 33.333 0.00 0.00 33.33 3.27
4015 4900 9.788889 ATGATCTTTTAGCATAATGTCTCATCA 57.211 29.630 0.00 0.00 30.71 3.07
4016 4901 9.788889 TGATCTTTTAGCATAATGTCTCATCAT 57.211 29.630 0.00 0.00 0.00 2.45
4018 4903 8.969260 TCTTTTAGCATAATGTCTCATCATGT 57.031 30.769 0.00 0.00 0.00 3.21
4019 4904 9.399797 TCTTTTAGCATAATGTCTCATCATGTT 57.600 29.630 0.00 0.00 0.00 2.71
4025 4910 9.399797 AGCATAATGTCTCATCATGTTTTTAGA 57.600 29.630 0.00 0.00 0.00 2.10
4148 5033 9.249053 TCATTGTATATGCCTTTAAAGAAACCA 57.751 29.630 16.98 8.23 0.00 3.67
4149 5034 9.301153 CATTGTATATGCCTTTAAAGAAACCAC 57.699 33.333 16.98 7.60 0.00 4.16
4150 5035 8.644374 TTGTATATGCCTTTAAAGAAACCACT 57.356 30.769 16.98 3.17 0.00 4.00
4151 5036 8.050778 TGTATATGCCTTTAAAGAAACCACTG 57.949 34.615 16.98 0.00 0.00 3.66
4152 5037 7.885922 TGTATATGCCTTTAAAGAAACCACTGA 59.114 33.333 16.98 0.00 0.00 3.41
4153 5038 7.775053 ATATGCCTTTAAAGAAACCACTGAA 57.225 32.000 16.98 0.00 0.00 3.02
4154 5039 6.670695 ATGCCTTTAAAGAAACCACTGAAT 57.329 33.333 16.98 0.00 0.00 2.57
4155 5040 6.478512 TGCCTTTAAAGAAACCACTGAATT 57.521 33.333 16.98 0.00 0.00 2.17
4156 5041 6.512297 TGCCTTTAAAGAAACCACTGAATTC 58.488 36.000 16.98 0.00 0.00 2.17
4157 5042 6.323739 TGCCTTTAAAGAAACCACTGAATTCT 59.676 34.615 16.98 0.00 35.00 2.40
4158 5043 7.504238 TGCCTTTAAAGAAACCACTGAATTCTA 59.496 33.333 16.98 0.00 33.26 2.10
4159 5044 8.023706 GCCTTTAAAGAAACCACTGAATTCTAG 58.976 37.037 16.98 5.30 33.26 2.43
4160 5045 9.067986 CCTTTAAAGAAACCACTGAATTCTAGT 57.932 33.333 16.98 5.93 33.26 2.57
4164 5049 8.974060 AAAGAAACCACTGAATTCTAGTACAA 57.026 30.769 7.05 0.00 33.26 2.41
4165 5050 9.574516 AAAGAAACCACTGAATTCTAGTACAAT 57.425 29.630 7.05 0.00 33.26 2.71
4166 5051 8.553459 AGAAACCACTGAATTCTAGTACAATG 57.447 34.615 7.05 0.00 31.88 2.82
4167 5052 8.157476 AGAAACCACTGAATTCTAGTACAATGT 58.843 33.333 7.05 0.00 31.88 2.71
4168 5053 8.691661 AAACCACTGAATTCTAGTACAATGTT 57.308 30.769 7.05 5.57 0.00 2.71
4169 5054 8.691661 AACCACTGAATTCTAGTACAATGTTT 57.308 30.769 7.05 0.00 0.00 2.83
4170 5055 8.099364 ACCACTGAATTCTAGTACAATGTTTG 57.901 34.615 7.05 0.00 0.00 2.93
4171 5056 7.936847 ACCACTGAATTCTAGTACAATGTTTGA 59.063 33.333 7.05 0.00 0.00 2.69
4172 5057 8.783093 CCACTGAATTCTAGTACAATGTTTGAA 58.217 33.333 7.05 0.00 0.00 2.69
4173 5058 9.599322 CACTGAATTCTAGTACAATGTTTGAAC 57.401 33.333 7.05 0.00 0.00 3.18
4174 5059 9.337396 ACTGAATTCTAGTACAATGTTTGAACA 57.663 29.630 7.05 0.00 44.06 3.18
4180 5065 9.607988 TTCTAGTACAATGTTTGAACAAGAAGA 57.392 29.630 0.10 0.00 43.03 2.87
4181 5066 9.261180 TCTAGTACAATGTTTGAACAAGAAGAG 57.739 33.333 0.10 0.00 43.03 2.85
4182 5067 9.261180 CTAGTACAATGTTTGAACAAGAAGAGA 57.739 33.333 0.10 0.00 43.03 3.10
4183 5068 8.682936 AGTACAATGTTTGAACAAGAAGAGAT 57.317 30.769 0.10 0.00 43.03 2.75
4184 5069 8.778358 AGTACAATGTTTGAACAAGAAGAGATC 58.222 33.333 0.10 0.00 43.03 2.75
4185 5070 6.662616 ACAATGTTTGAACAAGAAGAGATCG 58.337 36.000 0.10 0.00 43.03 3.69
4186 5071 6.260936 ACAATGTTTGAACAAGAAGAGATCGT 59.739 34.615 0.10 0.00 43.03 3.73
4187 5072 7.441157 ACAATGTTTGAACAAGAAGAGATCGTA 59.559 33.333 0.10 0.00 43.03 3.43
4188 5073 6.764877 TGTTTGAACAAGAAGAGATCGTAC 57.235 37.500 0.00 0.00 35.67 3.67
4189 5074 6.513180 TGTTTGAACAAGAAGAGATCGTACT 58.487 36.000 0.00 0.00 35.67 2.73
4190 5075 7.654568 TGTTTGAACAAGAAGAGATCGTACTA 58.345 34.615 0.00 0.00 35.67 1.82
4191 5076 7.594015 TGTTTGAACAAGAAGAGATCGTACTAC 59.406 37.037 0.00 0.00 35.67 2.73
4192 5077 5.866075 TGAACAAGAAGAGATCGTACTACG 58.134 41.667 1.93 1.93 44.19 3.51
4203 5088 2.692939 TCGTACTACGATACAAACGCG 58.307 47.619 3.53 3.53 46.73 6.01
4204 5089 2.347150 TCGTACTACGATACAAACGCGA 59.653 45.455 15.93 0.00 46.73 5.87
4205 5090 3.001228 TCGTACTACGATACAAACGCGAT 59.999 43.478 15.93 0.00 46.73 4.58
4206 5091 3.353193 CGTACTACGATACAAACGCGATC 59.647 47.826 15.93 3.46 46.05 3.69
4207 5092 2.724349 ACTACGATACAAACGCGATCC 58.276 47.619 15.93 0.00 0.00 3.36
4208 5093 2.097954 ACTACGATACAAACGCGATCCA 59.902 45.455 15.93 0.00 0.00 3.41
4209 5094 2.218953 ACGATACAAACGCGATCCAT 57.781 45.000 15.93 0.00 0.00 3.41
4210 5095 2.546778 ACGATACAAACGCGATCCATT 58.453 42.857 15.93 0.00 0.00 3.16
4211 5096 2.538449 ACGATACAAACGCGATCCATTC 59.462 45.455 15.93 1.70 0.00 2.67
4212 5097 2.096909 CGATACAAACGCGATCCATTCC 60.097 50.000 15.93 0.00 0.00 3.01
4213 5098 2.388310 TACAAACGCGATCCATTCCA 57.612 45.000 15.93 0.00 0.00 3.53
4214 5099 0.802494 ACAAACGCGATCCATTCCAC 59.198 50.000 15.93 0.00 0.00 4.02
4215 5100 0.247655 CAAACGCGATCCATTCCACG 60.248 55.000 15.93 0.00 0.00 4.94
4216 5101 1.366111 AAACGCGATCCATTCCACGG 61.366 55.000 15.93 0.00 0.00 4.94
4217 5102 3.640000 CGCGATCCATTCCACGGC 61.640 66.667 0.00 0.00 0.00 5.68
4218 5103 3.279875 GCGATCCATTCCACGGCC 61.280 66.667 0.00 0.00 0.00 6.13
4219 5104 2.967076 CGATCCATTCCACGGCCG 60.967 66.667 26.86 26.86 0.00 6.13
4220 5105 2.591715 GATCCATTCCACGGCCGG 60.592 66.667 31.76 18.27 0.00 6.13
4221 5106 4.875713 ATCCATTCCACGGCCGGC 62.876 66.667 31.76 21.18 0.00 6.13
4232 5117 3.065567 GGCCGGCCGATGGAAAAA 61.066 61.111 33.60 0.00 0.00 1.94
4249 5134 3.837213 AAAAAGATGGTGTCATGCTCG 57.163 42.857 0.00 0.00 32.98 5.03
4250 5135 1.742761 AAAGATGGTGTCATGCTCGG 58.257 50.000 0.00 0.00 32.98 4.63
4251 5136 0.745845 AAGATGGTGTCATGCTCGGC 60.746 55.000 0.00 0.00 32.98 5.54
4252 5137 2.124570 ATGGTGTCATGCTCGGCC 60.125 61.111 0.00 0.00 31.34 6.13
4253 5138 2.599645 GATGGTGTCATGCTCGGCCT 62.600 60.000 0.00 0.00 32.98 5.19
4254 5139 2.045926 GGTGTCATGCTCGGCCTT 60.046 61.111 0.00 0.00 0.00 4.35
4255 5140 2.109126 GGTGTCATGCTCGGCCTTC 61.109 63.158 0.00 0.00 0.00 3.46
4256 5141 1.375908 GTGTCATGCTCGGCCTTCA 60.376 57.895 0.00 0.00 0.00 3.02
4257 5142 0.745845 GTGTCATGCTCGGCCTTCAT 60.746 55.000 0.00 0.00 0.00 2.57
4258 5143 0.745486 TGTCATGCTCGGCCTTCATG 60.745 55.000 17.48 17.48 39.02 3.07
4259 5144 1.820906 TCATGCTCGGCCTTCATGC 60.821 57.895 18.31 8.87 37.93 4.06
4292 5177 4.533225 TTTTTGCATTTGTGTGTGATGC 57.467 36.364 0.00 0.88 44.81 3.91
4293 5178 2.151881 TTGCATTTGTGTGTGATGCC 57.848 45.000 5.24 0.00 44.15 4.40
4294 5179 1.038280 TGCATTTGTGTGTGATGCCA 58.962 45.000 5.24 0.00 44.15 4.92
4295 5180 1.619332 TGCATTTGTGTGTGATGCCAT 59.381 42.857 5.24 0.00 44.15 4.40
4296 5181 2.037381 TGCATTTGTGTGTGATGCCATT 59.963 40.909 5.24 0.00 44.15 3.16
4297 5182 3.257624 TGCATTTGTGTGTGATGCCATTA 59.742 39.130 5.24 0.00 44.15 1.90
4298 5183 4.081586 TGCATTTGTGTGTGATGCCATTAT 60.082 37.500 5.24 0.00 44.15 1.28
4299 5184 4.871557 GCATTTGTGTGTGATGCCATTATT 59.128 37.500 0.00 0.00 40.10 1.40
4300 5185 5.352016 GCATTTGTGTGTGATGCCATTATTT 59.648 36.000 0.00 0.00 40.10 1.40
4301 5186 6.128227 GCATTTGTGTGTGATGCCATTATTTT 60.128 34.615 0.00 0.00 40.10 1.82
4302 5187 7.457868 CATTTGTGTGTGATGCCATTATTTTC 58.542 34.615 0.00 0.00 0.00 2.29
4303 5188 5.070770 TGTGTGTGATGCCATTATTTTCC 57.929 39.130 0.00 0.00 0.00 3.13
4304 5189 4.771577 TGTGTGTGATGCCATTATTTTCCT 59.228 37.500 0.00 0.00 0.00 3.36
4305 5190 5.245751 TGTGTGTGATGCCATTATTTTCCTT 59.754 36.000 0.00 0.00 0.00 3.36
4306 5191 5.807011 GTGTGTGATGCCATTATTTTCCTTC 59.193 40.000 0.00 0.00 0.00 3.46
4307 5192 5.105392 TGTGTGATGCCATTATTTTCCTTCC 60.105 40.000 0.00 0.00 0.00 3.46
4308 5193 5.022122 TGTGATGCCATTATTTTCCTTCCA 58.978 37.500 0.00 0.00 0.00 3.53
4309 5194 5.105392 TGTGATGCCATTATTTTCCTTCCAC 60.105 40.000 0.00 0.00 0.00 4.02
4310 5195 5.127682 GTGATGCCATTATTTTCCTTCCACT 59.872 40.000 0.00 0.00 0.00 4.00
4311 5196 5.127519 TGATGCCATTATTTTCCTTCCACTG 59.872 40.000 0.00 0.00 0.00 3.66
4312 5197 4.671831 TGCCATTATTTTCCTTCCACTGA 58.328 39.130 0.00 0.00 0.00 3.41
4313 5198 4.462483 TGCCATTATTTTCCTTCCACTGAC 59.538 41.667 0.00 0.00 0.00 3.51
4314 5199 4.142160 GCCATTATTTTCCTTCCACTGACC 60.142 45.833 0.00 0.00 0.00 4.02
4315 5200 5.264395 CCATTATTTTCCTTCCACTGACCT 58.736 41.667 0.00 0.00 0.00 3.85
4316 5201 5.358160 CCATTATTTTCCTTCCACTGACCTC 59.642 44.000 0.00 0.00 0.00 3.85
4317 5202 5.843019 TTATTTTCCTTCCACTGACCTCT 57.157 39.130 0.00 0.00 0.00 3.69
4318 5203 4.731313 ATTTTCCTTCCACTGACCTCTT 57.269 40.909 0.00 0.00 0.00 2.85
4319 5204 4.519906 TTTTCCTTCCACTGACCTCTTT 57.480 40.909 0.00 0.00 0.00 2.52
4320 5205 3.492102 TTCCTTCCACTGACCTCTTTG 57.508 47.619 0.00 0.00 0.00 2.77
4321 5206 2.408565 TCCTTCCACTGACCTCTTTGT 58.591 47.619 0.00 0.00 0.00 2.83
4322 5207 3.583228 TCCTTCCACTGACCTCTTTGTA 58.417 45.455 0.00 0.00 0.00 2.41
4323 5208 3.323979 TCCTTCCACTGACCTCTTTGTAC 59.676 47.826 0.00 0.00 0.00 2.90
4324 5209 3.071023 CCTTCCACTGACCTCTTTGTACA 59.929 47.826 0.00 0.00 0.00 2.90
4325 5210 4.444306 CCTTCCACTGACCTCTTTGTACAA 60.444 45.833 3.59 3.59 0.00 2.41
4326 5211 4.974645 TCCACTGACCTCTTTGTACAAT 57.025 40.909 9.56 0.00 0.00 2.71
4327 5212 4.641396 TCCACTGACCTCTTTGTACAATG 58.359 43.478 9.56 12.04 0.00 2.82
4328 5213 4.102524 TCCACTGACCTCTTTGTACAATGT 59.897 41.667 18.04 9.91 0.00 2.71
4329 5214 4.821805 CCACTGACCTCTTTGTACAATGTT 59.178 41.667 18.04 6.94 0.00 2.71
4330 5215 5.299279 CCACTGACCTCTTTGTACAATGTTT 59.701 40.000 18.04 6.65 0.00 2.83
4331 5216 6.485313 CCACTGACCTCTTTGTACAATGTTTA 59.515 38.462 18.04 0.00 0.00 2.01
4332 5217 7.012894 CCACTGACCTCTTTGTACAATGTTTAA 59.987 37.037 18.04 0.00 0.00 1.52
4333 5218 8.567948 CACTGACCTCTTTGTACAATGTTTAAT 58.432 33.333 18.04 4.52 0.00 1.40
4334 5219 9.131791 ACTGACCTCTTTGTACAATGTTTAATT 57.868 29.630 18.04 2.40 0.00 1.40
4335 5220 9.965824 CTGACCTCTTTGTACAATGTTTAATTT 57.034 29.630 18.04 1.56 0.00 1.82
4357 5242 2.041251 TTTACGGGAAATTAGGGCGG 57.959 50.000 0.00 0.00 0.00 6.13
4358 5243 0.464193 TTACGGGAAATTAGGGCGGC 60.464 55.000 0.00 0.00 0.00 6.53
4359 5244 2.328155 TACGGGAAATTAGGGCGGCC 62.328 60.000 22.67 22.67 0.00 6.13
4360 5245 2.601299 GGGAAATTAGGGCGGCCT 59.399 61.111 34.70 34.70 0.00 5.19
4361 5246 1.828224 GGGAAATTAGGGCGGCCTG 60.828 63.158 38.60 0.00 0.00 4.85
4362 5247 1.076995 GGAAATTAGGGCGGCCTGT 60.077 57.895 38.60 24.51 0.00 4.00
4363 5248 1.384222 GGAAATTAGGGCGGCCTGTG 61.384 60.000 38.60 0.00 0.00 3.66
4364 5249 2.004808 GAAATTAGGGCGGCCTGTGC 62.005 60.000 38.60 19.37 0.00 4.57
4374 5259 3.368571 GCCTGTGCCAGCCTGAAC 61.369 66.667 0.00 0.00 0.00 3.18
4375 5260 2.433446 CCTGTGCCAGCCTGAACT 59.567 61.111 0.00 0.00 0.00 3.01
4376 5261 1.228367 CCTGTGCCAGCCTGAACTT 60.228 57.895 0.00 0.00 0.00 2.66
4377 5262 0.036732 CCTGTGCCAGCCTGAACTTA 59.963 55.000 0.00 0.00 0.00 2.24
4378 5263 1.340405 CCTGTGCCAGCCTGAACTTAT 60.340 52.381 0.00 0.00 0.00 1.73
4379 5264 2.092968 CCTGTGCCAGCCTGAACTTATA 60.093 50.000 0.00 0.00 0.00 0.98
4380 5265 3.434167 CCTGTGCCAGCCTGAACTTATAT 60.434 47.826 0.00 0.00 0.00 0.86
4381 5266 4.202441 CTGTGCCAGCCTGAACTTATATT 58.798 43.478 0.00 0.00 0.00 1.28
4382 5267 4.599041 TGTGCCAGCCTGAACTTATATTT 58.401 39.130 0.00 0.00 0.00 1.40
4383 5268 4.398988 TGTGCCAGCCTGAACTTATATTTG 59.601 41.667 0.00 0.00 0.00 2.32
4384 5269 3.381272 TGCCAGCCTGAACTTATATTTGC 59.619 43.478 0.00 0.00 0.00 3.68
4385 5270 3.633986 GCCAGCCTGAACTTATATTTGCT 59.366 43.478 0.00 0.00 0.00 3.91
4386 5271 4.498682 GCCAGCCTGAACTTATATTTGCTG 60.499 45.833 0.00 0.00 43.37 4.41
4387 5272 5.179045 CAGCCTGAACTTATATTTGCTGG 57.821 43.478 0.00 0.00 40.84 4.85
4388 5273 4.037208 CAGCCTGAACTTATATTTGCTGGG 59.963 45.833 0.00 0.00 40.84 4.45
4389 5274 3.319122 GCCTGAACTTATATTTGCTGGGG 59.681 47.826 0.00 0.00 0.00 4.96
4390 5275 4.792068 CCTGAACTTATATTTGCTGGGGA 58.208 43.478 0.00 0.00 0.00 4.81
4391 5276 4.823989 CCTGAACTTATATTTGCTGGGGAG 59.176 45.833 0.00 0.00 0.00 4.30
4392 5277 5.397899 CCTGAACTTATATTTGCTGGGGAGA 60.398 44.000 0.00 0.00 0.00 3.71
4393 5278 5.684704 TGAACTTATATTTGCTGGGGAGAG 58.315 41.667 0.00 0.00 0.00 3.20
4394 5279 5.428457 TGAACTTATATTTGCTGGGGAGAGA 59.572 40.000 0.00 0.00 0.00 3.10
4395 5280 6.101734 TGAACTTATATTTGCTGGGGAGAGAT 59.898 38.462 0.00 0.00 0.00 2.75
4396 5281 5.874093 ACTTATATTTGCTGGGGAGAGATG 58.126 41.667 0.00 0.00 0.00 2.90
4397 5282 5.608437 ACTTATATTTGCTGGGGAGAGATGA 59.392 40.000 0.00 0.00 0.00 2.92
4398 5283 2.725221 ATTTGCTGGGGAGAGATGAC 57.275 50.000 0.00 0.00 0.00 3.06
4399 5284 0.250234 TTTGCTGGGGAGAGATGACG 59.750 55.000 0.00 0.00 0.00 4.35
4400 5285 0.614697 TTGCTGGGGAGAGATGACGA 60.615 55.000 0.00 0.00 0.00 4.20
4401 5286 1.323271 TGCTGGGGAGAGATGACGAC 61.323 60.000 0.00 0.00 0.00 4.34
4402 5287 1.323271 GCTGGGGAGAGATGACGACA 61.323 60.000 0.00 0.00 0.00 4.35
4403 5288 1.407936 CTGGGGAGAGATGACGACAT 58.592 55.000 0.00 0.00 39.67 3.06
4404 5289 1.759445 CTGGGGAGAGATGACGACATT 59.241 52.381 1.10 0.00 36.82 2.71
4405 5290 1.757118 TGGGGAGAGATGACGACATTC 59.243 52.381 1.10 2.49 36.82 2.67
4406 5291 1.757118 GGGGAGAGATGACGACATTCA 59.243 52.381 1.10 0.00 36.82 2.57
4407 5292 2.366916 GGGGAGAGATGACGACATTCAT 59.633 50.000 1.10 0.00 39.02 2.57
4408 5293 3.388308 GGGAGAGATGACGACATTCATG 58.612 50.000 1.10 0.00 36.30 3.07
4409 5294 3.181471 GGGAGAGATGACGACATTCATGT 60.181 47.826 1.10 0.00 45.16 3.21
4410 5295 4.038042 GGGAGAGATGACGACATTCATGTA 59.962 45.833 1.10 0.00 41.95 2.29
4411 5296 5.218885 GGAGAGATGACGACATTCATGTAG 58.781 45.833 1.10 0.00 41.95 2.74
4412 5297 5.221145 GGAGAGATGACGACATTCATGTAGT 60.221 44.000 5.48 5.48 46.80 2.73
4413 5298 6.214191 AGAGATGACGACATTCATGTAGTT 57.786 37.500 7.07 0.00 44.72 2.24
4414 5299 7.334844 AGAGATGACGACATTCATGTAGTTA 57.665 36.000 7.07 4.05 44.72 2.24
4415 5300 7.197017 AGAGATGACGACATTCATGTAGTTAC 58.803 38.462 7.07 3.33 44.72 2.50
4416 5301 6.863275 AGATGACGACATTCATGTAGTTACA 58.137 36.000 7.07 2.98 44.72 2.41
4417 5302 6.752351 AGATGACGACATTCATGTAGTTACAC 59.248 38.462 7.07 2.88 44.72 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.317827 AGTAGTGGTATAACTTTCTTCAGGTAA 57.682 33.333 0.00 0.00 0.00 2.85
43 44 8.890410 AGTAGTGGTATAACTTTCTTCAGGTA 57.110 34.615 0.00 0.00 0.00 3.08
119 129 0.032403 TCTTCTTTTTCCCGTCGCGA 59.968 50.000 3.71 3.71 0.00 5.87
122 132 4.806342 TCTTTTCTTCTTTTTCCCGTCG 57.194 40.909 0.00 0.00 0.00 5.12
134 144 6.899114 TCATTTCGCTACCTTTCTTTTCTTC 58.101 36.000 0.00 0.00 0.00 2.87
135 145 6.710744 TCTCATTTCGCTACCTTTCTTTTCTT 59.289 34.615 0.00 0.00 0.00 2.52
136 146 6.231211 TCTCATTTCGCTACCTTTCTTTTCT 58.769 36.000 0.00 0.00 0.00 2.52
137 147 6.481954 TCTCATTTCGCTACCTTTCTTTTC 57.518 37.500 0.00 0.00 0.00 2.29
138 148 8.561738 TTATCTCATTTCGCTACCTTTCTTTT 57.438 30.769 0.00 0.00 0.00 2.27
148 163 2.794910 GCGTGCTTATCTCATTTCGCTA 59.205 45.455 0.00 0.00 39.43 4.26
157 172 2.231215 ATGTGGAGCGTGCTTATCTC 57.769 50.000 0.00 0.00 0.00 2.75
181 196 2.995872 GCGACGAGGAGGAGCAGTT 61.996 63.158 0.00 0.00 0.00 3.16
250 265 4.227134 CGCCGACATGAGGGAGGG 62.227 72.222 0.00 0.00 0.00 4.30
318 333 0.691078 TTATCTGAGGGCCGAGGCTT 60.691 55.000 14.33 2.73 41.60 4.35
319 334 0.472734 ATTATCTGAGGGCCGAGGCT 60.473 55.000 14.33 0.00 41.60 4.58
321 336 2.248248 TGTATTATCTGAGGGCCGAGG 58.752 52.381 0.00 0.00 0.00 4.63
322 337 3.069586 TGTTGTATTATCTGAGGGCCGAG 59.930 47.826 0.00 0.00 0.00 4.63
323 338 3.035363 TGTTGTATTATCTGAGGGCCGA 58.965 45.455 0.00 0.00 0.00 5.54
324 339 3.131396 GTGTTGTATTATCTGAGGGCCG 58.869 50.000 0.00 0.00 0.00 6.13
325 340 3.131396 CGTGTTGTATTATCTGAGGGCC 58.869 50.000 0.00 0.00 0.00 5.80
326 341 4.051922 CTCGTGTTGTATTATCTGAGGGC 58.948 47.826 0.00 0.00 0.00 5.19
327 342 4.621991 CCTCGTGTTGTATTATCTGAGGG 58.378 47.826 0.00 0.00 38.44 4.30
353 390 3.432759 TCGATGTCGCTCGAATACG 57.567 52.632 0.00 0.83 44.14 3.06
379 416 2.247437 GGCAGCGTTGGATCCGATC 61.247 63.158 4.57 0.00 0.00 3.69
380 417 2.203070 GGCAGCGTTGGATCCGAT 60.203 61.111 4.57 0.00 0.00 4.18
381 418 4.812476 CGGCAGCGTTGGATCCGA 62.812 66.667 10.46 1.27 42.43 4.55
383 420 3.195698 GTCGGCAGCGTTGGATCC 61.196 66.667 4.20 4.20 0.00 3.36
391 428 0.460284 AGTTTCATAGGTCGGCAGCG 60.460 55.000 0.00 0.00 0.00 5.18
393 430 2.002586 CACAGTTTCATAGGTCGGCAG 58.997 52.381 0.00 0.00 0.00 4.85
403 440 4.378770 GCATGATCGAACACACAGTTTCAT 60.379 41.667 0.00 0.00 41.51 2.57
404 441 3.058983 GCATGATCGAACACACAGTTTCA 60.059 43.478 0.00 0.00 41.51 2.69
408 445 1.070821 CGCATGATCGAACACACAGT 58.929 50.000 0.00 0.00 0.00 3.55
409 446 0.247419 GCGCATGATCGAACACACAG 60.247 55.000 0.30 0.00 0.00 3.66
410 447 0.948141 TGCGCATGATCGAACACACA 60.948 50.000 5.66 0.00 0.00 3.72
411 448 0.374758 ATGCGCATGATCGAACACAC 59.625 50.000 24.69 0.00 0.00 3.82
412 449 1.085893 AATGCGCATGATCGAACACA 58.914 45.000 26.09 0.00 0.00 3.72
413 450 1.459756 CAATGCGCATGATCGAACAC 58.540 50.000 26.09 0.00 0.00 3.32
414 451 0.377905 CCAATGCGCATGATCGAACA 59.622 50.000 26.09 0.00 0.00 3.18
415 452 0.931662 GCCAATGCGCATGATCGAAC 60.932 55.000 26.09 5.87 0.00 3.95
443 483 4.692475 CGGTGTGAACGGGGGTCC 62.692 72.222 0.00 0.00 0.00 4.46
469 511 7.225725 ACTAGCCTACTACTAGTACATTCCAG 58.774 42.308 0.00 0.00 46.57 3.86
480 522 3.070734 ACGCTGCTACTAGCCTACTACTA 59.929 47.826 5.58 0.00 41.51 1.82
485 527 2.617774 ACTTACGCTGCTACTAGCCTAC 59.382 50.000 5.58 0.00 41.51 3.18
487 529 1.405821 CACTTACGCTGCTACTAGCCT 59.594 52.381 5.58 0.00 41.51 4.58
489 531 1.404391 TCCACTTACGCTGCTACTAGC 59.596 52.381 0.61 0.61 42.82 3.42
490 532 3.489398 CCTTCCACTTACGCTGCTACTAG 60.489 52.174 0.00 0.00 0.00 2.57
491 533 2.426024 CCTTCCACTTACGCTGCTACTA 59.574 50.000 0.00 0.00 0.00 1.82
492 534 1.204941 CCTTCCACTTACGCTGCTACT 59.795 52.381 0.00 0.00 0.00 2.57
495 537 1.067071 GTACCTTCCACTTACGCTGCT 60.067 52.381 0.00 0.00 0.00 4.24
497 539 1.068055 ACGTACCTTCCACTTACGCTG 60.068 52.381 0.00 0.00 41.83 5.18
498 540 1.068055 CACGTACCTTCCACTTACGCT 60.068 52.381 0.00 0.00 41.83 5.07
499 541 1.068333 TCACGTACCTTCCACTTACGC 60.068 52.381 0.00 0.00 41.83 4.42
500 542 2.995466 TCACGTACCTTCCACTTACG 57.005 50.000 0.00 0.00 43.34 3.18
501 543 5.578336 GGTAATTCACGTACCTTCCACTTAC 59.422 44.000 0.00 0.00 38.41 2.34
512 554 5.069501 AGGTCTCTTGGTAATTCACGTAC 57.930 43.478 0.00 0.00 0.00 3.67
544 586 9.128404 GAGTTTTACCCCTCGGATTATAAATTT 57.872 33.333 0.00 0.00 0.00 1.82
623 665 7.925993 TGCTCTCGTTTATTTTTCTGAAGAAA 58.074 30.769 1.31 1.31 41.77 2.52
649 691 1.076923 TGTAGCCTCGTCCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
650 692 1.076632 CTGTAGCCTCGTCCCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
651 693 2.787567 GCTGTAGCCTCGTCCCTCC 61.788 68.421 0.00 0.00 34.31 4.30
652 694 1.755008 AGCTGTAGCCTCGTCCCTC 60.755 63.158 0.00 0.00 43.38 4.30
653 695 2.055042 CAGCTGTAGCCTCGTCCCT 61.055 63.158 5.25 0.00 43.38 4.20
654 696 1.605058 TTCAGCTGTAGCCTCGTCCC 61.605 60.000 14.67 0.00 43.38 4.46
655 697 0.458716 GTTCAGCTGTAGCCTCGTCC 60.459 60.000 14.67 0.00 43.38 4.79
656 698 0.528470 AGTTCAGCTGTAGCCTCGTC 59.472 55.000 14.67 0.00 43.38 4.20
657 699 0.244994 CAGTTCAGCTGTAGCCTCGT 59.755 55.000 14.67 0.00 43.38 4.18
658 700 0.459237 CCAGTTCAGCTGTAGCCTCG 60.459 60.000 14.67 0.00 43.55 4.63
659 701 0.742635 GCCAGTTCAGCTGTAGCCTC 60.743 60.000 14.67 0.00 43.55 4.70
660 702 1.298014 GCCAGTTCAGCTGTAGCCT 59.702 57.895 14.67 2.58 43.55 4.58
661 703 1.746991 GGCCAGTTCAGCTGTAGCC 60.747 63.158 14.67 15.22 42.43 3.93
662 704 0.742635 GAGGCCAGTTCAGCTGTAGC 60.743 60.000 14.67 10.22 43.55 3.58
663 705 0.901124 AGAGGCCAGTTCAGCTGTAG 59.099 55.000 14.67 2.16 43.55 2.74
666 708 0.391395 CAGAGAGGCCAGTTCAGCTG 60.391 60.000 7.63 7.63 44.63 4.24
679 721 1.078848 CAAACGGGGAGGCAGAGAG 60.079 63.158 0.00 0.00 0.00 3.20
680 722 1.125093 TTCAAACGGGGAGGCAGAGA 61.125 55.000 0.00 0.00 0.00 3.10
706 748 2.408050 GCGAAATAGCCGTCATGAGAT 58.592 47.619 0.00 0.00 0.00 2.75
737 779 7.647228 CAAGAAAGGGAGAAAGAGAAAGAAAG 58.353 38.462 0.00 0.00 0.00 2.62
738 780 6.039829 GCAAGAAAGGGAGAAAGAGAAAGAAA 59.960 38.462 0.00 0.00 0.00 2.52
739 781 5.532779 GCAAGAAAGGGAGAAAGAGAAAGAA 59.467 40.000 0.00 0.00 0.00 2.52
740 782 5.066593 GCAAGAAAGGGAGAAAGAGAAAGA 58.933 41.667 0.00 0.00 0.00 2.52
741 783 5.069318 AGCAAGAAAGGGAGAAAGAGAAAG 58.931 41.667 0.00 0.00 0.00 2.62
742 784 5.053978 AGCAAGAAAGGGAGAAAGAGAAA 57.946 39.130 0.00 0.00 0.00 2.52
744 786 4.392940 CAAGCAAGAAAGGGAGAAAGAGA 58.607 43.478 0.00 0.00 0.00 3.10
753 802 4.996788 ATAATCAGCAAGCAAGAAAGGG 57.003 40.909 0.00 0.00 0.00 3.95
754 803 9.674824 CTAATAATAATCAGCAAGCAAGAAAGG 57.325 33.333 0.00 0.00 0.00 3.11
762 811 6.145535 GTGCCACTAATAATAATCAGCAAGC 58.854 40.000 0.00 0.00 0.00 4.01
770 819 6.758593 CACGTACGTGCCACTAATAATAAT 57.241 37.500 32.93 0.00 39.39 1.28
794 843 4.350441 GCTAGGCTAGCGGCGGAG 62.350 72.222 28.98 1.19 42.62 4.63
802 851 5.533154 ACCTTCGCATATATAGCTAGGCTAG 59.467 44.000 17.33 17.33 44.66 3.42
803 852 5.446860 ACCTTCGCATATATAGCTAGGCTA 58.553 41.667 0.00 1.64 45.55 3.93
804 853 4.282496 ACCTTCGCATATATAGCTAGGCT 58.718 43.478 0.00 0.00 43.41 4.58
835 885 2.961522 TCAACGCTTCGAACATTTCC 57.038 45.000 0.00 0.00 0.00 3.13
848 899 4.448005 TCTCGTTTAATTTCGTTCAACGC 58.552 39.130 4.63 0.00 43.53 4.84
868 919 4.038522 CGATCTCTCTCACTCTCTCTCTCT 59.961 50.000 0.00 0.00 0.00 3.10
877 928 4.628074 AGCTACTACGATCTCTCTCACTC 58.372 47.826 0.00 0.00 0.00 3.51
878 929 4.502604 GGAGCTACTACGATCTCTCTCACT 60.503 50.000 0.00 0.00 0.00 3.41
879 930 3.744426 GGAGCTACTACGATCTCTCTCAC 59.256 52.174 0.00 0.00 0.00 3.51
880 931 3.244284 GGGAGCTACTACGATCTCTCTCA 60.244 52.174 0.00 0.00 0.00 3.27
881 932 3.244284 TGGGAGCTACTACGATCTCTCTC 60.244 52.174 0.00 0.00 0.00 3.20
882 933 2.706723 TGGGAGCTACTACGATCTCTCT 59.293 50.000 0.00 0.00 0.00 3.10
883 934 3.071479 CTGGGAGCTACTACGATCTCTC 58.929 54.545 0.00 0.00 0.00 3.20
884 935 2.812613 GCTGGGAGCTACTACGATCTCT 60.813 54.545 0.00 0.00 38.45 3.10
885 936 1.538075 GCTGGGAGCTACTACGATCTC 59.462 57.143 0.00 0.00 38.45 2.75
894 945 2.052690 TCGTGAGGCTGGGAGCTAC 61.053 63.158 0.00 0.00 41.99 3.58
919 970 1.022982 TCAAATGGCAGAGCAGAGCG 61.023 55.000 0.00 0.00 0.00 5.03
950 1001 3.901797 AAAACAGCGCCTCCCTCCG 62.902 63.158 2.29 0.00 0.00 4.63
951 1002 1.603739 AAAAACAGCGCCTCCCTCC 60.604 57.895 2.29 0.00 0.00 4.30
1087 1138 1.721487 CCATTGTCATTCCCGACGC 59.279 57.895 0.00 0.00 38.84 5.19
1120 1174 1.338337 CTGGTAGTAGCCCGACATGAG 59.662 57.143 0.00 0.00 0.00 2.90
1323 1377 2.987821 GTTACCTGCGAACTCTGAAGAC 59.012 50.000 0.00 0.00 0.00 3.01
1383 1447 3.864160 GCAGACTCAGAAACTCTTCCTGG 60.864 52.174 0.00 0.00 31.28 4.45
1385 1449 2.968574 TGCAGACTCAGAAACTCTTCCT 59.031 45.455 0.00 0.00 31.28 3.36
1459 1523 1.718757 GCGATCGGGCAAAAGCAGAT 61.719 55.000 18.30 0.00 0.00 2.90
1597 1715 9.102757 CCGATGGATATAGACATTTCCTTTATG 57.897 37.037 0.00 0.00 34.36 1.90
1791 2511 1.666888 GGTAGTACACGTGTTCACCGG 60.667 57.143 28.55 0.00 0.00 5.28
1809 2529 1.064758 TCTGCACTGACCAAAACTGGT 60.065 47.619 0.00 0.00 46.40 4.00
1916 2638 2.472488 CCGTACGACCAGTTTGTTACAC 59.528 50.000 18.76 0.00 0.00 2.90
1917 2639 2.360483 TCCGTACGACCAGTTTGTTACA 59.640 45.455 18.76 0.00 0.00 2.41
1918 2640 2.726241 GTCCGTACGACCAGTTTGTTAC 59.274 50.000 18.76 0.00 35.23 2.50
1950 2673 0.861837 AGCGTTTCGACTTTGAGCTG 59.138 50.000 0.00 0.00 31.76 4.24
2005 2728 7.882791 TGTTTCATTTTCCTTATGTCAGCTAGA 59.117 33.333 0.00 0.00 0.00 2.43
2006 2729 8.044060 TGTTTCATTTTCCTTATGTCAGCTAG 57.956 34.615 0.00 0.00 0.00 3.42
2112 2838 7.064016 CCTGAAGACTTAGCTGTATCTTTGTTC 59.936 40.741 0.00 0.00 31.58 3.18
2193 2937 5.472478 GCTCATCCATGACATATTGACATGT 59.528 40.000 15.25 0.00 44.79 3.21
2198 2949 4.517832 GCAAGCTCATCCATGACATATTGA 59.482 41.667 0.00 0.00 32.50 2.57
2324 3085 2.159599 GCACCAGCTCAAGAATTCGAAG 60.160 50.000 3.35 0.41 37.91 3.79
2526 3298 1.530293 CAGATAGGATGCAAAGCGAGC 59.470 52.381 0.00 0.00 0.00 5.03
2566 3344 3.502123 ATTTATATGGTGTCACGGGGG 57.498 47.619 0.00 0.00 0.00 5.40
3048 3868 0.321996 AGAACGAGAGAAGGTTGCCC 59.678 55.000 0.00 0.00 0.00 5.36
3115 3944 2.894387 GCTGCTCATGACTCCGCC 60.894 66.667 0.00 0.00 0.00 6.13
3116 3945 1.882167 GAGCTGCTCATGACTCCGC 60.882 63.158 24.02 0.00 0.00 5.54
3117 3946 0.175302 AAGAGCTGCTCATGACTCCG 59.825 55.000 29.49 0.00 32.06 4.63
3118 3947 3.391965 CATAAGAGCTGCTCATGACTCC 58.608 50.000 29.49 2.47 32.06 3.85
3119 3948 3.391965 CCATAAGAGCTGCTCATGACTC 58.608 50.000 29.49 3.53 32.06 3.36
3120 3949 2.485124 GCCATAAGAGCTGCTCATGACT 60.485 50.000 29.49 7.47 32.06 3.41
3121 3950 1.872313 GCCATAAGAGCTGCTCATGAC 59.128 52.381 29.49 15.00 32.06 3.06
3122 3951 1.539712 CGCCATAAGAGCTGCTCATGA 60.540 52.381 29.49 15.26 32.06 3.07
3123 3952 0.866427 CGCCATAAGAGCTGCTCATG 59.134 55.000 29.49 23.21 32.06 3.07
3252 4090 2.813200 GAGTAGTAGTGGCCCGGC 59.187 66.667 0.00 0.00 0.00 6.13
3430 4277 0.915364 TTGGCCTTGGCTTTGGTTTT 59.085 45.000 11.71 0.00 0.00 2.43
3433 4280 0.178924 ATCTTGGCCTTGGCTTTGGT 60.179 50.000 11.71 0.00 0.00 3.67
3538 4385 5.760253 TCTCGATCTTCTTCTGCTTGTTTTT 59.240 36.000 0.00 0.00 0.00 1.94
3539 4386 5.300752 TCTCGATCTTCTTCTGCTTGTTTT 58.699 37.500 0.00 0.00 0.00 2.43
3540 4387 4.887748 TCTCGATCTTCTTCTGCTTGTTT 58.112 39.130 0.00 0.00 0.00 2.83
3541 4388 4.527509 TCTCGATCTTCTTCTGCTTGTT 57.472 40.909 0.00 0.00 0.00 2.83
3542 4389 4.527509 TTCTCGATCTTCTTCTGCTTGT 57.472 40.909 0.00 0.00 0.00 3.16
3551 4398 2.363680 ACGCCATCATTCTCGATCTTCT 59.636 45.455 0.00 0.00 0.00 2.85
3580 4427 1.075212 TCAATCAACACATGCCCCTCA 59.925 47.619 0.00 0.00 0.00 3.86
3610 4469 1.305201 ACGAACAAAATGAGCACCGT 58.695 45.000 0.00 0.00 0.00 4.83
3663 4522 3.569701 AGAAAGTACTAACAACGGGTCGA 59.430 43.478 0.00 0.00 0.00 4.20
3666 4525 4.677673 ACAGAAAGTACTAACAACGGGT 57.322 40.909 0.00 0.00 0.00 5.28
3711 4573 5.186198 AGTATCCAAACCTCCATTTCTTCG 58.814 41.667 0.00 0.00 0.00 3.79
3712 4574 6.659242 TGAAGTATCCAAACCTCCATTTCTTC 59.341 38.462 0.00 0.00 0.00 2.87
3715 4577 5.358160 CCTGAAGTATCCAAACCTCCATTTC 59.642 44.000 0.00 0.00 0.00 2.17
3716 4578 5.264395 CCTGAAGTATCCAAACCTCCATTT 58.736 41.667 0.00 0.00 0.00 2.32
3719 4581 2.576191 CCCTGAAGTATCCAAACCTCCA 59.424 50.000 0.00 0.00 0.00 3.86
3720 4582 2.092375 CCCCTGAAGTATCCAAACCTCC 60.092 54.545 0.00 0.00 0.00 4.30
3724 4586 2.576648 ACCTCCCCTGAAGTATCCAAAC 59.423 50.000 0.00 0.00 0.00 2.93
3725 4587 2.929301 ACCTCCCCTGAAGTATCCAAA 58.071 47.619 0.00 0.00 0.00 3.28
3736 4621 3.264450 AGACACTGATTTAACCTCCCCTG 59.736 47.826 0.00 0.00 0.00 4.45
3737 4622 3.532102 AGACACTGATTTAACCTCCCCT 58.468 45.455 0.00 0.00 0.00 4.79
3747 4632 4.218312 AGCTTCCCAAAAGACACTGATTT 58.782 39.130 0.00 0.00 0.00 2.17
3754 4639 4.825085 ACGATTAAAGCTTCCCAAAAGACA 59.175 37.500 0.00 0.00 0.00 3.41
3758 4643 4.319911 CGACACGATTAAAGCTTCCCAAAA 60.320 41.667 0.00 0.00 0.00 2.44
3767 4652 2.481185 TCCCAAACGACACGATTAAAGC 59.519 45.455 0.00 0.00 0.00 3.51
3768 4653 4.735662 TTCCCAAACGACACGATTAAAG 57.264 40.909 0.00 0.00 0.00 1.85
3769 4654 5.496133 TTTTCCCAAACGACACGATTAAA 57.504 34.783 0.00 0.00 0.00 1.52
3771 4656 5.692613 ATTTTTCCCAAACGACACGATTA 57.307 34.783 0.00 0.00 0.00 1.75
3773 4658 5.692613 TTATTTTTCCCAAACGACACGAT 57.307 34.783 0.00 0.00 0.00 3.73
3774 4659 5.008811 ACATTATTTTTCCCAAACGACACGA 59.991 36.000 0.00 0.00 0.00 4.35
3775 4660 5.216648 ACATTATTTTTCCCAAACGACACG 58.783 37.500 0.00 0.00 0.00 4.49
3776 4661 6.563196 GCAACATTATTTTTCCCAAACGACAC 60.563 38.462 0.00 0.00 0.00 3.67
3780 4665 5.614449 GCAGCAACATTATTTTTCCCAAACG 60.614 40.000 0.00 0.00 0.00 3.60
3781 4666 5.614449 CGCAGCAACATTATTTTTCCCAAAC 60.614 40.000 0.00 0.00 0.00 2.93
3782 4667 4.450419 CGCAGCAACATTATTTTTCCCAAA 59.550 37.500 0.00 0.00 0.00 3.28
3783 4668 3.993081 CGCAGCAACATTATTTTTCCCAA 59.007 39.130 0.00 0.00 0.00 4.12
3784 4669 3.006323 ACGCAGCAACATTATTTTTCCCA 59.994 39.130 0.00 0.00 0.00 4.37
3785 4670 3.584834 ACGCAGCAACATTATTTTTCCC 58.415 40.909 0.00 0.00 0.00 3.97
3786 4671 5.636837 TCTACGCAGCAACATTATTTTTCC 58.363 37.500 0.00 0.00 0.00 3.13
3787 4672 7.740519 AATCTACGCAGCAACATTATTTTTC 57.259 32.000 0.00 0.00 0.00 2.29
3788 4673 7.598493 ACAAATCTACGCAGCAACATTATTTTT 59.402 29.630 0.00 0.00 0.00 1.94
3789 4674 7.090173 ACAAATCTACGCAGCAACATTATTTT 58.910 30.769 0.00 0.00 0.00 1.82
3790 4675 6.620678 ACAAATCTACGCAGCAACATTATTT 58.379 32.000 0.00 0.00 0.00 1.40
3791 4676 6.194796 ACAAATCTACGCAGCAACATTATT 57.805 33.333 0.00 0.00 0.00 1.40
3792 4677 5.818136 ACAAATCTACGCAGCAACATTAT 57.182 34.783 0.00 0.00 0.00 1.28
3793 4678 5.872617 ACTACAAATCTACGCAGCAACATTA 59.127 36.000 0.00 0.00 0.00 1.90
3794 4679 4.695455 ACTACAAATCTACGCAGCAACATT 59.305 37.500 0.00 0.00 0.00 2.71
3795 4680 4.093408 CACTACAAATCTACGCAGCAACAT 59.907 41.667 0.00 0.00 0.00 2.71
3796 4681 3.431912 CACTACAAATCTACGCAGCAACA 59.568 43.478 0.00 0.00 0.00 3.33
3797 4682 3.432252 ACACTACAAATCTACGCAGCAAC 59.568 43.478 0.00 0.00 0.00 4.17
3798 4683 3.431912 CACACTACAAATCTACGCAGCAA 59.568 43.478 0.00 0.00 0.00 3.91
3803 4688 3.846360 AGACCACACTACAAATCTACGC 58.154 45.455 0.00 0.00 0.00 4.42
3805 4690 7.251994 CAGTAGAGACCACACTACAAATCTAC 58.748 42.308 0.00 0.00 40.73 2.59
3807 4692 5.336849 GCAGTAGAGACCACACTACAAATCT 60.337 44.000 0.00 0.00 40.73 2.40
3810 4695 3.639561 TGCAGTAGAGACCACACTACAAA 59.360 43.478 0.00 0.00 40.73 2.83
3821 4706 1.399791 GCCATGCTTTGCAGTAGAGAC 59.600 52.381 2.38 0.00 43.65 3.36
3825 4710 1.202371 CCATGCCATGCTTTGCAGTAG 60.202 52.381 0.00 0.00 43.65 2.57
3826 4711 0.818938 CCATGCCATGCTTTGCAGTA 59.181 50.000 0.00 0.00 43.65 2.74
3827 4712 0.901114 TCCATGCCATGCTTTGCAGT 60.901 50.000 0.00 0.00 43.65 4.40
3835 4720 0.038526 GCTGCTAATCCATGCCATGC 60.039 55.000 0.00 0.00 0.00 4.06
3851 4736 5.926542 TCCTAATAAAAATCGATCGGAGCTG 59.073 40.000 16.41 0.00 0.00 4.24
3852 4737 6.097915 TCCTAATAAAAATCGATCGGAGCT 57.902 37.500 16.41 0.00 0.00 4.09
3853 4738 6.780706 TTCCTAATAAAAATCGATCGGAGC 57.219 37.500 16.41 0.00 0.00 4.70
3854 4739 8.311650 ACATTCCTAATAAAAATCGATCGGAG 57.688 34.615 16.41 0.00 0.00 4.63
3855 4740 9.938280 ATACATTCCTAATAAAAATCGATCGGA 57.062 29.630 16.41 2.25 0.00 4.55
3856 4741 9.973246 CATACATTCCTAATAAAAATCGATCGG 57.027 33.333 16.41 0.00 0.00 4.18
3872 4757 9.264653 TCTAAGATAGCATCATCATACATTCCT 57.735 33.333 0.00 0.00 0.00 3.36
3873 4758 9.881649 TTCTAAGATAGCATCATCATACATTCC 57.118 33.333 0.00 0.00 0.00 3.01
3876 4761 9.872721 CACTTCTAAGATAGCATCATCATACAT 57.127 33.333 0.00 0.00 0.00 2.29
3877 4762 8.864087 ACACTTCTAAGATAGCATCATCATACA 58.136 33.333 0.00 0.00 0.00 2.29
3878 4763 9.352784 GACACTTCTAAGATAGCATCATCATAC 57.647 37.037 0.00 0.00 0.00 2.39
3879 4764 9.082313 TGACACTTCTAAGATAGCATCATCATA 57.918 33.333 0.00 0.00 0.00 2.15
3880 4765 7.960262 TGACACTTCTAAGATAGCATCATCAT 58.040 34.615 0.00 0.00 0.00 2.45
3881 4766 7.352079 TGACACTTCTAAGATAGCATCATCA 57.648 36.000 0.00 0.00 0.00 3.07
3882 4767 7.871973 ACATGACACTTCTAAGATAGCATCATC 59.128 37.037 0.00 0.00 0.00 2.92
3883 4768 7.733969 ACATGACACTTCTAAGATAGCATCAT 58.266 34.615 0.00 0.00 0.00 2.45
3884 4769 7.117285 ACATGACACTTCTAAGATAGCATCA 57.883 36.000 0.00 0.00 0.00 3.07
3885 4770 7.812191 CCTACATGACACTTCTAAGATAGCATC 59.188 40.741 0.00 0.00 0.00 3.91
3886 4771 7.507277 TCCTACATGACACTTCTAAGATAGCAT 59.493 37.037 0.00 0.00 0.00 3.79
3887 4772 6.833933 TCCTACATGACACTTCTAAGATAGCA 59.166 38.462 0.00 0.00 0.00 3.49
3888 4773 7.278461 TCCTACATGACACTTCTAAGATAGC 57.722 40.000 0.00 0.00 0.00 2.97
3890 4775 9.862149 TGTATCCTACATGACACTTCTAAGATA 57.138 33.333 0.00 0.00 32.89 1.98
3891 4776 8.768501 TGTATCCTACATGACACTTCTAAGAT 57.231 34.615 0.00 0.00 32.89 2.40
3892 4777 8.768501 ATGTATCCTACATGACACTTCTAAGA 57.231 34.615 0.00 0.00 46.94 2.10
3906 4791 5.718607 CCTCCATCTCATCATGTATCCTACA 59.281 44.000 0.00 0.00 43.80 2.74
3907 4792 5.954752 TCCTCCATCTCATCATGTATCCTAC 59.045 44.000 0.00 0.00 0.00 3.18
3908 4793 6.157862 TCCTCCATCTCATCATGTATCCTA 57.842 41.667 0.00 0.00 0.00 2.94
3909 4794 5.020941 TCCTCCATCTCATCATGTATCCT 57.979 43.478 0.00 0.00 0.00 3.24
3910 4795 4.161942 CCTCCTCCATCTCATCATGTATCC 59.838 50.000 0.00 0.00 0.00 2.59
3911 4796 5.022122 TCCTCCTCCATCTCATCATGTATC 58.978 45.833 0.00 0.00 0.00 2.24
3912 4797 5.020941 TCCTCCTCCATCTCATCATGTAT 57.979 43.478 0.00 0.00 0.00 2.29
3913 4798 4.475919 TCCTCCTCCATCTCATCATGTA 57.524 45.455 0.00 0.00 0.00 2.29
3914 4799 3.341318 TCCTCCTCCATCTCATCATGT 57.659 47.619 0.00 0.00 0.00 3.21
3915 4800 3.902467 TCTTCCTCCTCCATCTCATCATG 59.098 47.826 0.00 0.00 0.00 3.07
3916 4801 4.210611 TCTTCCTCCTCCATCTCATCAT 57.789 45.455 0.00 0.00 0.00 2.45
3917 4802 3.695357 TCTTCCTCCTCCATCTCATCA 57.305 47.619 0.00 0.00 0.00 3.07
3918 4803 3.966665 AGTTCTTCCTCCTCCATCTCATC 59.033 47.826 0.00 0.00 0.00 2.92
3919 4804 3.966665 GAGTTCTTCCTCCTCCATCTCAT 59.033 47.826 0.00 0.00 0.00 2.90
3920 4805 3.245766 TGAGTTCTTCCTCCTCCATCTCA 60.246 47.826 0.00 0.00 0.00 3.27
3921 4806 3.370104 TGAGTTCTTCCTCCTCCATCTC 58.630 50.000 0.00 0.00 0.00 2.75
3922 4807 3.481559 TGAGTTCTTCCTCCTCCATCT 57.518 47.619 0.00 0.00 0.00 2.90
3923 4808 4.898861 AGTATGAGTTCTTCCTCCTCCATC 59.101 45.833 0.00 0.00 0.00 3.51
3924 4809 4.889780 AGTATGAGTTCTTCCTCCTCCAT 58.110 43.478 0.00 0.00 0.00 3.41
3925 4810 4.338795 AGTATGAGTTCTTCCTCCTCCA 57.661 45.455 0.00 0.00 0.00 3.86
3926 4811 6.040054 GTCTTAGTATGAGTTCTTCCTCCTCC 59.960 46.154 0.00 0.00 0.00 4.30
3927 4812 6.603997 TGTCTTAGTATGAGTTCTTCCTCCTC 59.396 42.308 0.00 0.00 0.00 3.71
3928 4813 6.494952 TGTCTTAGTATGAGTTCTTCCTCCT 58.505 40.000 0.00 0.00 0.00 3.69
3929 4814 6.603997 TCTGTCTTAGTATGAGTTCTTCCTCC 59.396 42.308 0.00 0.00 0.00 4.30
3930 4815 7.338449 AGTCTGTCTTAGTATGAGTTCTTCCTC 59.662 40.741 0.00 0.00 0.00 3.71
3931 4816 7.179269 AGTCTGTCTTAGTATGAGTTCTTCCT 58.821 38.462 0.00 0.00 0.00 3.36
3932 4817 7.399245 AGTCTGTCTTAGTATGAGTTCTTCC 57.601 40.000 0.00 0.00 0.00 3.46
3933 4818 8.301002 ACAAGTCTGTCTTAGTATGAGTTCTTC 58.699 37.037 0.00 0.00 34.66 2.87
3934 4819 8.184304 ACAAGTCTGTCTTAGTATGAGTTCTT 57.816 34.615 0.00 0.00 34.66 2.52
3935 4820 7.768807 ACAAGTCTGTCTTAGTATGAGTTCT 57.231 36.000 0.00 0.00 34.66 3.01
3975 4860 9.905171 GCTAAAAGATCATCTCTTGTTTTCTTT 57.095 29.630 0.00 0.00 43.60 2.52
3976 4861 9.071276 TGCTAAAAGATCATCTCTTGTTTTCTT 57.929 29.630 0.00 0.00 43.60 2.52
3977 4862 8.627208 TGCTAAAAGATCATCTCTTGTTTTCT 57.373 30.769 0.00 0.00 43.60 2.52
3982 4867 9.624373 ACATTATGCTAAAAGATCATCTCTTGT 57.376 29.630 0.00 0.00 43.60 3.16
3985 4870 9.709495 GAGACATTATGCTAAAAGATCATCTCT 57.291 33.333 0.00 0.00 34.96 3.10
3986 4871 9.486497 TGAGACATTATGCTAAAAGATCATCTC 57.514 33.333 0.00 0.00 0.00 2.75
3989 4874 9.788889 TGATGAGACATTATGCTAAAAGATCAT 57.211 29.630 0.00 0.00 0.00 2.45
3990 4875 9.788889 ATGATGAGACATTATGCTAAAAGATCA 57.211 29.630 0.00 0.00 0.00 2.92
3992 4877 9.570468 ACATGATGAGACATTATGCTAAAAGAT 57.430 29.630 13.64 0.00 0.00 2.40
3993 4878 8.969260 ACATGATGAGACATTATGCTAAAAGA 57.031 30.769 13.64 0.00 0.00 2.52
3999 4884 9.399797 TCTAAAAACATGATGAGACATTATGCT 57.600 29.630 13.64 2.65 0.00 3.79
4122 5007 9.249053 TGGTTTCTTTAAAGGCATATACAATGA 57.751 29.630 15.13 0.00 0.00 2.57
4123 5008 9.301153 GTGGTTTCTTTAAAGGCATATACAATG 57.699 33.333 15.13 0.00 0.00 2.82
4124 5009 9.255029 AGTGGTTTCTTTAAAGGCATATACAAT 57.745 29.630 15.13 3.11 0.00 2.71
4125 5010 8.519526 CAGTGGTTTCTTTAAAGGCATATACAA 58.480 33.333 15.13 0.00 0.00 2.41
4126 5011 7.885922 TCAGTGGTTTCTTTAAAGGCATATACA 59.114 33.333 15.13 3.66 0.00 2.29
4127 5012 8.276252 TCAGTGGTTTCTTTAAAGGCATATAC 57.724 34.615 15.13 7.98 0.00 1.47
4128 5013 8.871629 TTCAGTGGTTTCTTTAAAGGCATATA 57.128 30.769 15.13 0.00 0.00 0.86
4129 5014 7.775053 TTCAGTGGTTTCTTTAAAGGCATAT 57.225 32.000 15.13 0.00 0.00 1.78
4130 5015 7.775053 ATTCAGTGGTTTCTTTAAAGGCATA 57.225 32.000 15.13 0.00 0.00 3.14
4131 5016 6.670695 ATTCAGTGGTTTCTTTAAAGGCAT 57.329 33.333 15.13 0.00 0.00 4.40
4132 5017 6.323739 AGAATTCAGTGGTTTCTTTAAAGGCA 59.676 34.615 15.13 0.00 0.00 4.75
4133 5018 6.749139 AGAATTCAGTGGTTTCTTTAAAGGC 58.251 36.000 15.13 6.17 0.00 4.35
4134 5019 9.067986 ACTAGAATTCAGTGGTTTCTTTAAAGG 57.932 33.333 15.13 0.00 32.28 3.11
4139 5024 8.974060 TTGTACTAGAATTCAGTGGTTTCTTT 57.026 30.769 8.44 5.13 32.28 2.52
4140 5025 9.003658 CATTGTACTAGAATTCAGTGGTTTCTT 57.996 33.333 8.44 1.51 32.28 2.52
4141 5026 8.157476 ACATTGTACTAGAATTCAGTGGTTTCT 58.843 33.333 8.44 11.56 34.29 2.52
4142 5027 8.324163 ACATTGTACTAGAATTCAGTGGTTTC 57.676 34.615 8.44 0.00 0.00 2.78
4143 5028 8.691661 AACATTGTACTAGAATTCAGTGGTTT 57.308 30.769 8.44 0.00 0.00 3.27
4144 5029 8.567948 CAAACATTGTACTAGAATTCAGTGGTT 58.432 33.333 8.44 0.00 29.99 3.67
4145 5030 7.936847 TCAAACATTGTACTAGAATTCAGTGGT 59.063 33.333 8.44 0.00 0.00 4.16
4146 5031 8.322906 TCAAACATTGTACTAGAATTCAGTGG 57.677 34.615 8.44 0.00 0.00 4.00
4147 5032 9.599322 GTTCAAACATTGTACTAGAATTCAGTG 57.401 33.333 8.44 0.00 0.00 3.66
4148 5033 9.337396 TGTTCAAACATTGTACTAGAATTCAGT 57.663 29.630 8.44 11.24 33.17 3.41
4154 5039 9.607988 TCTTCTTGTTCAAACATTGTACTAGAA 57.392 29.630 17.96 17.96 43.96 2.10
4155 5040 9.261180 CTCTTCTTGTTCAAACATTGTACTAGA 57.739 33.333 0.00 8.88 39.51 2.43
4156 5041 9.261180 TCTCTTCTTGTTCAAACATTGTACTAG 57.739 33.333 0.00 5.45 38.95 2.57
4157 5042 9.778741 ATCTCTTCTTGTTCAAACATTGTACTA 57.221 29.630 0.00 0.00 38.95 1.82
4158 5043 8.682936 ATCTCTTCTTGTTCAAACATTGTACT 57.317 30.769 0.00 0.00 38.95 2.73
4159 5044 7.742089 CGATCTCTTCTTGTTCAAACATTGTAC 59.258 37.037 0.00 0.00 38.95 2.90
4160 5045 7.441157 ACGATCTCTTCTTGTTCAAACATTGTA 59.559 33.333 0.00 0.00 38.95 2.41
4161 5046 6.260936 ACGATCTCTTCTTGTTCAAACATTGT 59.739 34.615 0.00 0.00 38.95 2.71
4162 5047 6.662616 ACGATCTCTTCTTGTTCAAACATTG 58.337 36.000 0.00 0.00 38.95 2.82
4163 5048 6.867662 ACGATCTCTTCTTGTTCAAACATT 57.132 33.333 0.00 0.00 38.95 2.71
4164 5049 7.155328 AGTACGATCTCTTCTTGTTCAAACAT 58.845 34.615 0.00 0.00 38.95 2.71
4165 5050 6.513180 AGTACGATCTCTTCTTGTTCAAACA 58.487 36.000 0.00 0.00 37.08 2.83
4166 5051 7.201249 CGTAGTACGATCTCTTCTTGTTCAAAC 60.201 40.741 17.85 0.00 46.05 2.93
4167 5052 6.800408 CGTAGTACGATCTCTTCTTGTTCAAA 59.200 38.462 17.85 0.00 46.05 2.69
4168 5053 6.148315 TCGTAGTACGATCTCTTCTTGTTCAA 59.852 38.462 21.10 0.00 46.73 2.69
4169 5054 5.640783 TCGTAGTACGATCTCTTCTTGTTCA 59.359 40.000 21.10 0.00 46.73 3.18
4170 5055 6.104439 TCGTAGTACGATCTCTTCTTGTTC 57.896 41.667 21.10 0.00 46.73 3.18
4184 5069 2.692939 TCGCGTTTGTATCGTAGTACG 58.307 47.619 16.65 16.65 44.19 3.67
4185 5070 3.661270 GGATCGCGTTTGTATCGTAGTAC 59.339 47.826 5.77 0.00 0.00 2.73
4186 5071 3.312146 TGGATCGCGTTTGTATCGTAGTA 59.688 43.478 5.77 0.00 0.00 1.82
4187 5072 2.097954 TGGATCGCGTTTGTATCGTAGT 59.902 45.455 5.77 0.00 0.00 2.73
4188 5073 2.723209 TGGATCGCGTTTGTATCGTAG 58.277 47.619 5.77 0.00 0.00 3.51
4189 5074 2.847959 TGGATCGCGTTTGTATCGTA 57.152 45.000 5.77 0.00 0.00 3.43
4190 5075 2.218953 ATGGATCGCGTTTGTATCGT 57.781 45.000 5.77 0.00 0.00 3.73
4191 5076 2.096909 GGAATGGATCGCGTTTGTATCG 60.097 50.000 5.77 0.00 0.00 2.92
4192 5077 2.869801 TGGAATGGATCGCGTTTGTATC 59.130 45.455 5.77 0.29 0.00 2.24
4193 5078 2.612212 GTGGAATGGATCGCGTTTGTAT 59.388 45.455 5.77 0.00 0.00 2.29
4194 5079 2.004017 GTGGAATGGATCGCGTTTGTA 58.996 47.619 5.77 0.00 0.00 2.41
4195 5080 0.802494 GTGGAATGGATCGCGTTTGT 59.198 50.000 5.77 0.00 0.00 2.83
4196 5081 0.247655 CGTGGAATGGATCGCGTTTG 60.248 55.000 5.77 0.00 0.00 2.93
4197 5082 2.086510 CGTGGAATGGATCGCGTTT 58.913 52.632 5.77 0.00 0.00 3.60
4198 5083 3.794270 CGTGGAATGGATCGCGTT 58.206 55.556 5.77 0.00 0.00 4.84
4215 5100 3.065567 TTTTTCCATCGGCCGGCC 61.066 61.111 36.69 36.69 0.00 6.13
4229 5114 2.489329 CCGAGCATGACACCATCTTTTT 59.511 45.455 0.00 0.00 0.00 1.94
4230 5115 2.086869 CCGAGCATGACACCATCTTTT 58.913 47.619 0.00 0.00 0.00 2.27
4231 5116 1.742761 CCGAGCATGACACCATCTTT 58.257 50.000 0.00 0.00 0.00 2.52
4232 5117 0.745845 GCCGAGCATGACACCATCTT 60.746 55.000 0.00 0.00 0.00 2.40
4233 5118 1.153289 GCCGAGCATGACACCATCT 60.153 57.895 0.00 0.00 0.00 2.90
4234 5119 2.182842 GGCCGAGCATGACACCATC 61.183 63.158 0.00 0.00 0.00 3.51
4235 5120 2.124570 GGCCGAGCATGACACCAT 60.125 61.111 0.00 0.00 0.00 3.55
4236 5121 2.803155 GAAGGCCGAGCATGACACCA 62.803 60.000 0.00 0.00 0.00 4.17
4237 5122 2.045926 AAGGCCGAGCATGACACC 60.046 61.111 0.00 0.00 0.00 4.16
4238 5123 0.745845 ATGAAGGCCGAGCATGACAC 60.746 55.000 0.00 0.00 0.00 3.67
4239 5124 0.745486 CATGAAGGCCGAGCATGACA 60.745 55.000 22.93 6.66 41.35 3.58
4240 5125 2.020131 CATGAAGGCCGAGCATGAC 58.980 57.895 22.93 1.82 41.35 3.06
4241 5126 1.820906 GCATGAAGGCCGAGCATGA 60.821 57.895 28.21 0.83 41.35 3.07
4242 5127 2.719979 GCATGAAGGCCGAGCATG 59.280 61.111 22.98 22.98 41.66 4.06
4243 5128 2.517875 GGCATGAAGGCCGAGCAT 60.518 61.111 0.00 0.00 45.40 3.79
4271 5156 3.311871 GGCATCACACACAAATGCAAAAA 59.688 39.130 8.61 0.00 45.95 1.94
4272 5157 2.871022 GGCATCACACACAAATGCAAAA 59.129 40.909 8.61 0.00 45.95 2.44
4273 5158 2.159000 TGGCATCACACACAAATGCAAA 60.159 40.909 8.61 0.00 45.95 3.68
4274 5159 1.411612 TGGCATCACACACAAATGCAA 59.588 42.857 8.61 0.00 45.95 4.08
4275 5160 1.038280 TGGCATCACACACAAATGCA 58.962 45.000 8.61 0.00 45.95 3.96
4276 5161 2.373540 ATGGCATCACACACAAATGC 57.626 45.000 0.00 0.00 43.95 3.56
4277 5162 6.971527 AAATAATGGCATCACACACAAATG 57.028 33.333 0.00 0.00 0.00 2.32
4278 5163 6.594937 GGAAAATAATGGCATCACACACAAAT 59.405 34.615 0.00 0.00 0.00 2.32
4279 5164 5.931146 GGAAAATAATGGCATCACACACAAA 59.069 36.000 0.00 0.00 0.00 2.83
4280 5165 5.245751 AGGAAAATAATGGCATCACACACAA 59.754 36.000 0.00 0.00 0.00 3.33
4281 5166 4.771577 AGGAAAATAATGGCATCACACACA 59.228 37.500 0.00 0.00 0.00 3.72
4282 5167 5.329035 AGGAAAATAATGGCATCACACAC 57.671 39.130 0.00 0.00 0.00 3.82
4283 5168 5.105392 GGAAGGAAAATAATGGCATCACACA 60.105 40.000 0.00 0.00 0.00 3.72
4284 5169 5.105392 TGGAAGGAAAATAATGGCATCACAC 60.105 40.000 0.00 0.00 0.00 3.82
4285 5170 5.022122 TGGAAGGAAAATAATGGCATCACA 58.978 37.500 0.00 0.00 0.00 3.58
4286 5171 5.127682 AGTGGAAGGAAAATAATGGCATCAC 59.872 40.000 0.00 0.00 0.00 3.06
4287 5172 5.127519 CAGTGGAAGGAAAATAATGGCATCA 59.872 40.000 0.00 0.00 0.00 3.07
4288 5173 5.360714 TCAGTGGAAGGAAAATAATGGCATC 59.639 40.000 0.00 0.00 0.00 3.91
4289 5174 5.127682 GTCAGTGGAAGGAAAATAATGGCAT 59.872 40.000 0.00 0.00 0.00 4.40
4290 5175 4.462483 GTCAGTGGAAGGAAAATAATGGCA 59.538 41.667 0.00 0.00 0.00 4.92
4291 5176 4.142160 GGTCAGTGGAAGGAAAATAATGGC 60.142 45.833 0.00 0.00 0.00 4.40
4292 5177 5.264395 AGGTCAGTGGAAGGAAAATAATGG 58.736 41.667 0.00 0.00 0.00 3.16
4293 5178 6.183347 AGAGGTCAGTGGAAGGAAAATAATG 58.817 40.000 0.00 0.00 0.00 1.90
4294 5179 6.394345 AGAGGTCAGTGGAAGGAAAATAAT 57.606 37.500 0.00 0.00 0.00 1.28
4295 5180 5.843019 AGAGGTCAGTGGAAGGAAAATAA 57.157 39.130 0.00 0.00 0.00 1.40
4296 5181 5.843019 AAGAGGTCAGTGGAAGGAAAATA 57.157 39.130 0.00 0.00 0.00 1.40
4297 5182 4.731313 AAGAGGTCAGTGGAAGGAAAAT 57.269 40.909 0.00 0.00 0.00 1.82
4298 5183 4.207165 CAAAGAGGTCAGTGGAAGGAAAA 58.793 43.478 0.00 0.00 0.00 2.29
4299 5184 3.202151 ACAAAGAGGTCAGTGGAAGGAAA 59.798 43.478 0.00 0.00 0.00 3.13
4300 5185 2.777692 ACAAAGAGGTCAGTGGAAGGAA 59.222 45.455 0.00 0.00 0.00 3.36
4301 5186 2.408565 ACAAAGAGGTCAGTGGAAGGA 58.591 47.619 0.00 0.00 0.00 3.36
4302 5187 2.938956 ACAAAGAGGTCAGTGGAAGG 57.061 50.000 0.00 0.00 0.00 3.46
4303 5188 4.336889 TGTACAAAGAGGTCAGTGGAAG 57.663 45.455 0.00 0.00 0.00 3.46
4304 5189 4.764050 TTGTACAAAGAGGTCAGTGGAA 57.236 40.909 5.64 0.00 0.00 3.53
4305 5190 4.102524 ACATTGTACAAAGAGGTCAGTGGA 59.897 41.667 17.18 0.00 0.00 4.02
4306 5191 4.389374 ACATTGTACAAAGAGGTCAGTGG 58.611 43.478 17.18 0.00 0.00 4.00
4307 5192 6.377327 AAACATTGTACAAAGAGGTCAGTG 57.623 37.500 17.18 7.99 0.00 3.66
4308 5193 8.691661 ATTAAACATTGTACAAAGAGGTCAGT 57.308 30.769 17.18 2.09 0.00 3.41
4309 5194 9.965824 AAATTAAACATTGTACAAAGAGGTCAG 57.034 29.630 17.18 1.54 0.00 3.51
4336 5221 2.754002 CCGCCCTAATTTCCCGTAAAAA 59.246 45.455 0.00 0.00 0.00 1.94
4337 5222 2.367486 CCGCCCTAATTTCCCGTAAAA 58.633 47.619 0.00 0.00 0.00 1.52
4338 5223 2.018133 GCCGCCCTAATTTCCCGTAAA 61.018 52.381 0.00 0.00 0.00 2.01
4339 5224 0.464193 GCCGCCCTAATTTCCCGTAA 60.464 55.000 0.00 0.00 0.00 3.18
4340 5225 1.146707 GCCGCCCTAATTTCCCGTA 59.853 57.895 0.00 0.00 0.00 4.02
4341 5226 2.124445 GCCGCCCTAATTTCCCGT 60.124 61.111 0.00 0.00 0.00 5.28
4342 5227 2.905373 GGCCGCCCTAATTTCCCG 60.905 66.667 0.00 0.00 0.00 5.14
4343 5228 1.828224 CAGGCCGCCCTAATTTCCC 60.828 63.158 5.55 0.00 40.33 3.97
4344 5229 1.076995 ACAGGCCGCCCTAATTTCC 60.077 57.895 5.55 0.00 40.33 3.13
4345 5230 2.004808 GCACAGGCCGCCCTAATTTC 62.005 60.000 5.55 0.00 40.33 2.17
4346 5231 2.052104 GCACAGGCCGCCCTAATTT 61.052 57.895 5.55 0.00 40.33 1.82
4347 5232 2.440247 GCACAGGCCGCCCTAATT 60.440 61.111 5.55 0.00 40.33 1.40
4360 5245 3.931907 ATATAAGTTCAGGCTGGCACA 57.068 42.857 15.73 0.00 0.00 4.57
4361 5246 4.734695 GCAAATATAAGTTCAGGCTGGCAC 60.735 45.833 15.73 11.88 0.00 5.01
4362 5247 3.381272 GCAAATATAAGTTCAGGCTGGCA 59.619 43.478 15.73 0.00 0.00 4.92
4363 5248 3.633986 AGCAAATATAAGTTCAGGCTGGC 59.366 43.478 15.73 8.24 0.00 4.85
4364 5249 5.179045 CAGCAAATATAAGTTCAGGCTGG 57.821 43.478 15.73 0.00 42.68 4.85
4365 5250 4.037208 CCCAGCAAATATAAGTTCAGGCTG 59.963 45.833 8.58 8.58 45.16 4.85
4366 5251 4.210331 CCCAGCAAATATAAGTTCAGGCT 58.790 43.478 0.00 0.00 0.00 4.58
4367 5252 3.319122 CCCCAGCAAATATAAGTTCAGGC 59.681 47.826 0.00 0.00 0.00 4.85
4368 5253 4.792068 TCCCCAGCAAATATAAGTTCAGG 58.208 43.478 0.00 0.00 0.00 3.86
4369 5254 5.684704 TCTCCCCAGCAAATATAAGTTCAG 58.315 41.667 0.00 0.00 0.00 3.02
4370 5255 5.428457 TCTCTCCCCAGCAAATATAAGTTCA 59.572 40.000 0.00 0.00 0.00 3.18
4371 5256 5.930135 TCTCTCCCCAGCAAATATAAGTTC 58.070 41.667 0.00 0.00 0.00 3.01
4372 5257 5.975988 TCTCTCCCCAGCAAATATAAGTT 57.024 39.130 0.00 0.00 0.00 2.66
4373 5258 5.608437 TCATCTCTCCCCAGCAAATATAAGT 59.392 40.000 0.00 0.00 0.00 2.24
4374 5259 5.936956 GTCATCTCTCCCCAGCAAATATAAG 59.063 44.000 0.00 0.00 0.00 1.73
4375 5260 5.511373 CGTCATCTCTCCCCAGCAAATATAA 60.511 44.000 0.00 0.00 0.00 0.98
4376 5261 4.021104 CGTCATCTCTCCCCAGCAAATATA 60.021 45.833 0.00 0.00 0.00 0.86
4377 5262 3.244353 CGTCATCTCTCCCCAGCAAATAT 60.244 47.826 0.00 0.00 0.00 1.28
4378 5263 2.103094 CGTCATCTCTCCCCAGCAAATA 59.897 50.000 0.00 0.00 0.00 1.40
4379 5264 1.134280 CGTCATCTCTCCCCAGCAAAT 60.134 52.381 0.00 0.00 0.00 2.32
4380 5265 0.250234 CGTCATCTCTCCCCAGCAAA 59.750 55.000 0.00 0.00 0.00 3.68
4381 5266 0.614697 TCGTCATCTCTCCCCAGCAA 60.615 55.000 0.00 0.00 0.00 3.91
4382 5267 1.000359 TCGTCATCTCTCCCCAGCA 60.000 57.895 0.00 0.00 0.00 4.41
4383 5268 1.323271 TGTCGTCATCTCTCCCCAGC 61.323 60.000 0.00 0.00 0.00 4.85
4384 5269 1.407936 ATGTCGTCATCTCTCCCCAG 58.592 55.000 0.00 0.00 0.00 4.45
4385 5270 1.757118 GAATGTCGTCATCTCTCCCCA 59.243 52.381 0.00 0.00 32.56 4.96
4386 5271 1.757118 TGAATGTCGTCATCTCTCCCC 59.243 52.381 0.00 0.00 32.56 4.81
4387 5272 3.181471 ACATGAATGTCGTCATCTCTCCC 60.181 47.826 0.00 0.00 36.04 4.30
4388 5273 4.052159 ACATGAATGTCGTCATCTCTCC 57.948 45.455 0.00 0.00 36.04 3.71
4389 5274 5.826586 ACTACATGAATGTCGTCATCTCTC 58.173 41.667 0.00 0.00 41.97 3.20
4390 5275 5.843673 ACTACATGAATGTCGTCATCTCT 57.156 39.130 0.00 0.00 41.97 3.10
4391 5276 6.972901 TGTAACTACATGAATGTCGTCATCTC 59.027 38.462 0.00 0.00 41.97 2.75
4392 5277 6.752351 GTGTAACTACATGAATGTCGTCATCT 59.248 38.462 0.00 0.00 41.97 2.90
4393 5278 6.923458 GTGTAACTACATGAATGTCGTCATC 58.077 40.000 0.00 0.00 41.97 2.92
4394 5279 6.887376 GTGTAACTACATGAATGTCGTCAT 57.113 37.500 0.00 0.00 41.97 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.