Multiple sequence alignment - TraesCS3D01G363700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G363700 chr3D 100.000 4605 0 0 1 4605 477885080 477880476 0.000000e+00 8504.0
1 TraesCS3D01G363700 chr3D 91.111 45 4 0 4147 4191 322459035 322459079 1.380000e-05 62.1
2 TraesCS3D01G363700 chr3B 86.378 1872 123 63 1 1808 637067624 637065821 0.000000e+00 1923.0
3 TraesCS3D01G363700 chr3B 82.071 898 83 28 2254 3137 637065326 637064493 0.000000e+00 695.0
4 TraesCS3D01G363700 chr3B 85.329 668 54 22 3408 4047 637064250 637063599 0.000000e+00 651.0
5 TraesCS3D01G363700 chr3B 90.618 437 19 10 4189 4605 637063447 637063013 1.120000e-155 560.0
6 TraesCS3D01G363700 chr3B 88.235 357 24 7 1818 2156 637065780 637065424 1.190000e-110 411.0
7 TraesCS3D01G363700 chr3B 90.909 55 5 0 3311 3365 637064322 637064268 1.780000e-09 75.0
8 TraesCS3D01G363700 chr3A 88.857 1041 67 26 804 1814 621220972 621219951 0.000000e+00 1234.0
9 TraesCS3D01G363700 chr3A 83.952 1346 118 46 1863 3150 621219858 621218553 0.000000e+00 1199.0
10 TraesCS3D01G363700 chr3A 84.840 686 49 29 105 766 621221624 621220970 1.400000e-179 640.0
11 TraesCS3D01G363700 chr3A 87.828 534 39 12 3314 3822 621218386 621217854 1.830000e-168 603.0
12 TraesCS3D01G363700 chr3A 86.079 431 19 8 4189 4605 621215415 621215012 4.260000e-115 425.0
13 TraesCS3D01G363700 chr3A 93.182 220 9 4 3816 4033 621215697 621215482 7.430000e-83 318.0
14 TraesCS3D01G363700 chr3A 87.805 82 0 4 1 72 621221709 621221628 2.280000e-13 87.9
15 TraesCS3D01G363700 chr7A 79.553 313 39 13 965 1266 188918937 188919235 2.810000e-47 200.0
16 TraesCS3D01G363700 chr1B 79.570 279 40 10 1151 1417 498705923 498706196 2.830000e-42 183.0
17 TraesCS3D01G363700 chr1A 77.448 337 46 18 1151 1462 473037653 473037984 1.700000e-39 174.0
18 TraesCS3D01G363700 chr1A 85.000 60 8 1 4147 4205 558543085 558543026 4.980000e-05 60.2
19 TraesCS3D01G363700 chr1D 78.746 287 37 14 1151 1417 373430111 373430393 2.200000e-38 171.0
20 TraesCS3D01G363700 chr5B 90.435 115 11 0 2027 2141 448106595 448106709 7.980000e-33 152.0
21 TraesCS3D01G363700 chr7D 97.500 40 1 0 4150 4189 564626138 564626177 8.270000e-08 69.4
22 TraesCS3D01G363700 chr7D 100.000 31 0 0 4161 4191 500625078 500625048 1.790000e-04 58.4
23 TraesCS3D01G363700 chr6D 93.182 44 3 0 4148 4191 2100090 2100133 1.070000e-06 65.8
24 TraesCS3D01G363700 chr7B 91.111 45 4 0 4147 4191 255415394 255415350 1.380000e-05 62.1
25 TraesCS3D01G363700 chr2A 91.111 45 4 0 4147 4191 748543362 748543406 1.380000e-05 62.1
26 TraesCS3D01G363700 chr4B 100.000 31 0 0 4161 4191 171652620 171652590 1.790000e-04 58.4
27 TraesCS3D01G363700 chr4B 89.130 46 4 1 4161 4205 13282418 13282373 6.440000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G363700 chr3D 477880476 477885080 4604 True 8504.000000 8504 100.000000 1 4605 1 chr3D.!!$R1 4604
1 TraesCS3D01G363700 chr3B 637063013 637067624 4611 True 719.166667 1923 87.256667 1 4605 6 chr3B.!!$R1 4604
2 TraesCS3D01G363700 chr3A 621215012 621221709 6697 True 643.842857 1234 87.506143 1 4605 7 chr3A.!!$R1 4604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 1017 0.036105 TAGACCGTCACCGTAGAGCA 60.036 55.0 0.40 0.0 0.00 4.26 F
1801 1932 0.747255 GAGCTCAGGTCTCGCCATTA 59.253 55.0 9.40 0.0 40.61 1.90 F
2867 3107 0.108585 GGGAAGAACACAGTGGCTCA 59.891 55.0 5.31 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2055 0.250945 TCCGACTCTCTGTCAGTGCT 60.251 55.0 0.00 0.0 45.6 4.40 R
2939 3179 0.036875 CGACCCAAAGGCTTTCCTCT 59.963 55.0 10.08 0.0 43.4 3.69 R
4061 6542 0.036952 ACAGTCATCGTGGGAAGCTG 60.037 55.0 0.00 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 100 4.019681 ACAATCGGTCATCCAGTTTTCCTA 60.020 41.667 0.00 0.00 0.00 2.94
81 106 5.313712 GGTCATCCAGTTTTCCTAACAGAA 58.686 41.667 0.00 0.00 0.00 3.02
95 120 5.008613 TCCTAACAGAAACACACATTTGCTC 59.991 40.000 0.00 0.00 0.00 4.26
102 127 0.802494 CACACATTTGCTCCCCGTAC 59.198 55.000 0.00 0.00 0.00 3.67
113 138 2.043980 CCCCGTACGCCATTGCTTT 61.044 57.895 10.49 0.00 34.43 3.51
160 185 6.286240 TGAAGTTGTGCACAGATCTAGTAT 57.714 37.500 20.59 5.22 0.00 2.12
161 186 6.101997 TGAAGTTGTGCACAGATCTAGTATG 58.898 40.000 20.59 0.00 0.00 2.39
162 187 5.921962 AGTTGTGCACAGATCTAGTATGA 57.078 39.130 20.59 0.00 0.00 2.15
163 188 5.900425 AGTTGTGCACAGATCTAGTATGAG 58.100 41.667 20.59 0.00 0.00 2.90
164 189 4.313277 TGTGCACAGATCTAGTATGAGC 57.687 45.455 17.42 0.00 36.38 4.26
165 190 3.701040 TGTGCACAGATCTAGTATGAGCA 59.299 43.478 17.42 10.66 42.06 4.26
166 191 4.343239 TGTGCACAGATCTAGTATGAGCAT 59.657 41.667 17.42 0.00 45.00 3.79
167 192 4.685165 GTGCACAGATCTAGTATGAGCATG 59.315 45.833 13.17 0.00 45.00 4.06
168 193 4.586001 TGCACAGATCTAGTATGAGCATGA 59.414 41.667 0.00 0.00 40.00 3.07
169 194 5.162794 GCACAGATCTAGTATGAGCATGAG 58.837 45.833 0.00 0.00 35.97 2.90
244 277 1.890876 ATTACTCGGTGCACTGCAAA 58.109 45.000 21.33 14.08 41.47 3.68
252 286 1.398595 GTGCACTGCAAATTCGTCAC 58.601 50.000 10.32 0.00 41.47 3.67
259 293 1.794222 CAAATTCGTCACGGCCTCC 59.206 57.895 0.00 0.00 0.00 4.30
302 336 5.106357 GGAGCTGACCTTGATTTTCTTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
312 346 7.650903 CCTTGATTTTCTTCTTCTTGTTGGAAG 59.349 37.037 0.00 0.00 42.72 3.46
357 391 1.009829 CATAGCAAGTCGTTGGAGGC 58.990 55.000 0.00 0.00 33.87 4.70
373 407 2.431260 GCTTTCCGTGCGGTCGTA 60.431 61.111 10.60 0.00 36.47 3.43
457 499 0.176680 GACACTCATGCGTGATCCCT 59.823 55.000 22.09 0.00 38.27 4.20
458 500 0.176680 ACACTCATGCGTGATCCCTC 59.823 55.000 22.09 0.00 38.27 4.30
459 501 0.531532 CACTCATGCGTGATCCCTCC 60.532 60.000 10.35 0.00 37.06 4.30
460 502 1.070445 CTCATGCGTGATCCCTCCC 59.930 63.158 9.53 0.00 32.98 4.30
468 510 2.060383 TGATCCCTCCCAGCGACAG 61.060 63.158 0.00 0.00 0.00 3.51
525 581 0.108992 TACCGCGCTCGACAGAAAAT 60.109 50.000 5.56 0.00 38.10 1.82
537 593 3.570550 CGACAGAAAATTTACCCCCACAA 59.429 43.478 0.00 0.00 0.00 3.33
538 594 4.038162 CGACAGAAAATTTACCCCCACAAA 59.962 41.667 0.00 0.00 0.00 2.83
571 648 3.406595 GACCCCGATGCAAGGAGGG 62.407 68.421 12.59 12.14 43.88 4.30
572 649 3.089874 CCCCGATGCAAGGAGGGA 61.090 66.667 17.39 0.00 46.64 4.20
573 650 2.507944 CCCGATGCAAGGAGGGAG 59.492 66.667 12.59 0.00 46.64 4.30
574 651 2.507944 CCGATGCAAGGAGGGAGG 59.492 66.667 5.73 0.00 0.00 4.30
695 777 2.883730 GCGATACCGTTGCGCTGA 60.884 61.111 9.73 0.00 46.53 4.26
696 778 2.860628 GCGATACCGTTGCGCTGAG 61.861 63.158 9.73 0.00 46.53 3.35
697 779 2.230940 CGATACCGTTGCGCTGAGG 61.231 63.158 9.73 11.56 0.00 3.86
698 780 2.511600 ATACCGTTGCGCTGAGGC 60.512 61.111 9.73 0.00 0.00 4.70
699 781 2.907897 GATACCGTTGCGCTGAGGCT 62.908 60.000 9.73 0.00 36.09 4.58
700 782 2.907897 ATACCGTTGCGCTGAGGCTC 62.908 60.000 9.73 7.79 36.09 4.70
718 800 2.581354 GCCGTCAGCTCTCATGGT 59.419 61.111 0.00 0.00 38.99 3.55
835 931 1.919918 TTTAATACGTACGGGCACGG 58.080 50.000 21.06 0.00 46.12 4.94
915 1017 0.036105 TAGACCGTCACCGTAGAGCA 60.036 55.000 0.40 0.00 0.00 4.26
916 1018 1.136984 GACCGTCACCGTAGAGCAG 59.863 63.158 0.00 0.00 0.00 4.24
917 1019 2.267681 GACCGTCACCGTAGAGCAGG 62.268 65.000 0.00 0.00 0.00 4.85
918 1020 2.044555 CCGTCACCGTAGAGCAGGA 61.045 63.158 0.00 0.00 0.00 3.86
919 1021 1.429825 CGTCACCGTAGAGCAGGAG 59.570 63.158 0.00 0.00 0.00 3.69
955 1057 7.033185 GGGGTTGTTGTCAATTGTATTGTATC 58.967 38.462 5.13 0.00 35.92 2.24
956 1058 6.745450 GGGTTGTTGTCAATTGTATTGTATCG 59.255 38.462 5.13 0.00 35.92 2.92
966 1075 1.000060 GTATTGTATCGTAGCCCCGCA 60.000 52.381 0.00 0.00 0.00 5.69
1111 1225 2.260154 TGTGTGCATGCCGAGGTTG 61.260 57.895 16.68 0.00 0.00 3.77
1175 1292 1.227002 GACCATCGACTTCCTCCGC 60.227 63.158 0.00 0.00 0.00 5.54
1277 1394 1.584483 CGCGCATTCTTGTGGATGC 60.584 57.895 8.75 0.00 36.74 3.91
1305 1430 4.845824 GCCGTTGATTCGCGCGTC 62.846 66.667 30.98 21.37 0.00 5.19
1436 1561 3.138798 GGCAGCCTCTCGGACGTA 61.139 66.667 3.29 0.00 0.00 3.57
1593 1724 1.511768 GGAACGAAGGAGGAGGACG 59.488 63.158 0.00 0.00 0.00 4.79
1594 1725 0.964358 GGAACGAAGGAGGAGGACGA 60.964 60.000 0.00 0.00 0.00 4.20
1793 1924 2.977178 CGCAAGGAGCTCAGGTCT 59.023 61.111 17.19 0.00 42.61 3.85
1801 1932 0.747255 GAGCTCAGGTCTCGCCATTA 59.253 55.000 9.40 0.00 40.61 1.90
1805 1936 2.544685 CTCAGGTCTCGCCATTAACTG 58.455 52.381 0.00 0.00 40.61 3.16
1808 1939 1.135083 AGGTCTCGCCATTAACTGTCG 60.135 52.381 0.00 0.00 40.61 4.35
1810 1941 1.918609 GTCTCGCCATTAACTGTCGTC 59.081 52.381 0.00 0.00 0.00 4.20
1814 1945 1.403647 CGCCATTAACTGTCGTCCTCA 60.404 52.381 0.00 0.00 0.00 3.86
1816 1947 3.270877 GCCATTAACTGTCGTCCTCATT 58.729 45.455 0.00 0.00 0.00 2.57
1838 2000 2.490509 TCTGCAATGCCATTCTTGTCAG 59.509 45.455 1.53 0.00 32.59 3.51
1855 2021 1.532437 TCAGATTTTGACACGCTGCAG 59.468 47.619 10.11 10.11 0.00 4.41
1873 2050 2.677902 GCAGTTCTGTATGGCAGTAGCA 60.678 50.000 0.00 0.00 45.23 3.49
1878 2055 2.093021 TCTGTATGGCAGTAGCATTGCA 60.093 45.455 11.91 0.00 45.23 4.08
1881 2058 0.681887 ATGGCAGTAGCATTGCAGCA 60.682 50.000 11.91 0.00 43.28 4.41
1882 2059 1.138247 GGCAGTAGCATTGCAGCAC 59.862 57.895 11.91 5.74 43.28 4.40
1885 2062 1.445871 CAGTAGCATTGCAGCACTGA 58.554 50.000 23.10 0.00 41.68 3.41
1886 2063 1.129998 CAGTAGCATTGCAGCACTGAC 59.870 52.381 23.10 6.69 41.68 3.51
1887 2064 1.159285 GTAGCATTGCAGCACTGACA 58.841 50.000 16.61 0.11 36.85 3.58
1911 2091 0.173708 GTCGGAAGGAACAGCGAGAT 59.826 55.000 0.00 0.00 0.00 2.75
1917 2097 0.904865 AGGAACAGCGAGATGGACCA 60.905 55.000 0.00 0.00 0.00 4.02
1924 2104 2.265739 GAGATGGACCACGCTGCA 59.734 61.111 0.00 0.00 0.00 4.41
2027 2207 2.026157 GATGAGGCGCGACGATGA 59.974 61.111 12.10 0.00 0.00 2.92
2139 2319 0.395312 AATTCAACGACACCCGGAGT 59.605 50.000 0.73 0.00 43.93 3.85
2156 2336 2.105993 GGAGTTCACCCAACAAGGTACT 59.894 50.000 0.00 0.00 38.39 2.73
2162 2342 3.834231 TCACCCAACAAGGTACTACTACC 59.166 47.826 0.00 0.00 42.84 3.18
2165 2345 3.055602 CCCAACAAGGTACTACTACCACC 60.056 52.174 1.95 0.00 44.75 4.61
2167 2347 3.439857 ACAAGGTACTACTACCACCGA 57.560 47.619 1.95 0.00 44.75 4.69
2168 2348 3.084786 ACAAGGTACTACTACCACCGAC 58.915 50.000 1.95 0.00 44.75 4.79
2169 2349 2.029838 AGGTACTACTACCACCGACG 57.970 55.000 1.95 0.00 44.75 5.12
2170 2350 1.279271 AGGTACTACTACCACCGACGT 59.721 52.381 0.00 0.00 44.75 4.34
2171 2351 2.500098 AGGTACTACTACCACCGACGTA 59.500 50.000 0.00 0.00 44.75 3.57
2172 2352 3.134804 AGGTACTACTACCACCGACGTAT 59.865 47.826 0.00 0.00 44.75 3.06
2173 2353 3.248602 GGTACTACTACCACCGACGTATG 59.751 52.174 0.00 0.00 42.16 2.39
2174 2354 3.266510 ACTACTACCACCGACGTATGA 57.733 47.619 0.00 0.00 0.00 2.15
2176 2356 0.737219 ACTACCACCGACGTATGAGC 59.263 55.000 0.00 0.00 0.00 4.26
2178 2358 0.736636 TACCACCGACGTATGAGCTG 59.263 55.000 0.00 0.00 0.00 4.24
2179 2359 1.878522 CCACCGACGTATGAGCTGC 60.879 63.158 0.00 0.00 0.00 5.25
2180 2360 1.153842 CACCGACGTATGAGCTGCA 60.154 57.895 1.02 0.00 0.00 4.41
2181 2361 0.528466 CACCGACGTATGAGCTGCAT 60.528 55.000 1.02 0.00 41.08 3.96
2218 2416 8.603242 AAATCACTAGTTCTGTCAAAATACGT 57.397 30.769 0.00 0.00 0.00 3.57
2252 2476 6.635030 ATCATGAATGATGTGTCCTTGATG 57.365 37.500 0.00 0.00 45.27 3.07
2272 2496 7.080353 TGATGTGAGATTTGACATGATGAAC 57.920 36.000 0.00 0.00 32.85 3.18
2284 2508 1.064463 ATGATGAACATTGCCGGAGGT 60.064 47.619 5.05 0.00 43.70 3.85
2287 2511 6.754019 ATGATGAACATTGCCGGAGGTGAT 62.754 45.833 5.05 0.00 43.70 3.06
2341 2566 2.639286 CAAACTGCAGGGTGACGC 59.361 61.111 19.93 0.00 0.00 5.19
2364 2589 2.098293 GCAGATTGCAAGGTACCGG 58.902 57.895 6.18 0.00 44.26 5.28
2368 2593 1.429148 GATTGCAAGGTACCGGCGAG 61.429 60.000 21.32 0.06 0.00 5.03
2373 2598 0.249073 CAAGGTACCGGCGAGATCAG 60.249 60.000 9.30 0.00 0.00 2.90
2374 2599 1.392710 AAGGTACCGGCGAGATCAGG 61.393 60.000 9.30 0.00 0.00 3.86
2375 2600 2.125961 GGTACCGGCGAGATCAGGT 61.126 63.158 9.30 0.00 40.52 4.00
2380 2605 2.710902 CGGCGAGATCAGGTGGTGA 61.711 63.158 0.00 0.00 40.38 4.02
2382 2607 1.040646 GGCGAGATCAGGTGGTGATA 58.959 55.000 0.00 0.00 46.64 2.15
2423 2648 1.081892 CACCCAAGAACGCATCAGAG 58.918 55.000 0.00 0.00 0.00 3.35
2431 2656 1.672881 GAACGCATCAGAGGAAATGGG 59.327 52.381 0.00 0.00 40.53 4.00
2487 2712 0.602638 CTACAGCACGGCCACAAGAA 60.603 55.000 2.24 0.00 0.00 2.52
2541 2766 2.727647 GCTGCTCGAGCCGATACG 60.728 66.667 33.23 15.49 42.54 3.06
2612 2846 2.738521 CCGTCGGTCAGCAAGGTG 60.739 66.667 2.08 0.00 0.00 4.00
2657 2891 4.634133 GACCACGCGGACGACACA 62.634 66.667 12.47 0.00 43.93 3.72
2669 2903 4.957266 GACACACGGTCATGTCGA 57.043 55.556 15.58 0.00 46.19 4.20
2670 2904 2.431539 GACACACGGTCATGTCGAC 58.568 57.895 9.11 9.11 46.19 4.20
2751 2985 1.078567 CTGAGGCAGAAGCTGGACC 60.079 63.158 0.00 0.00 41.70 4.46
2852 3092 1.541670 GGCAACAGTTCGTACAGGGAA 60.542 52.381 0.00 0.00 0.00 3.97
2859 3099 2.696707 AGTTCGTACAGGGAAGAACACA 59.303 45.455 11.89 0.00 43.71 3.72
2860 3100 3.057734 GTTCGTACAGGGAAGAACACAG 58.942 50.000 5.59 0.00 41.66 3.66
2864 3104 0.179018 ACAGGGAAGAACACAGTGGC 60.179 55.000 5.31 0.00 0.00 5.01
2867 3107 0.108585 GGGAAGAACACAGTGGCTCA 59.891 55.000 5.31 0.00 0.00 4.26
2870 3110 2.565841 GAAGAACACAGTGGCTCAAGT 58.434 47.619 5.31 0.00 0.00 3.16
2876 3116 1.374758 CAGTGGCTCAAGTCCGTCC 60.375 63.158 0.00 0.00 0.00 4.79
2897 3137 1.723870 GCAGGAAATACTGGCGCTG 59.276 57.895 7.64 2.99 38.90 5.18
2898 3138 1.718757 GCAGGAAATACTGGCGCTGG 61.719 60.000 7.64 2.58 38.90 4.85
2899 3139 1.097547 CAGGAAATACTGGCGCTGGG 61.098 60.000 7.64 0.00 34.84 4.45
2903 3143 2.196997 AAATACTGGCGCTGGGAGCA 62.197 55.000 7.64 0.00 42.58 4.26
2949 3189 3.452627 TGACTATGGAAGAGAGGAAAGCC 59.547 47.826 0.00 0.00 0.00 4.35
2967 3207 4.337177 TTTGGGTCGATGGCGCCA 62.337 61.111 34.80 34.80 36.06 5.69
2970 3210 3.585990 GGGTCGATGGCGCCAATG 61.586 66.667 36.33 27.87 36.06 2.82
2973 3213 2.438254 TCGATGGCGCCAATGCTT 60.438 55.556 36.33 17.84 37.46 3.91
2975 3215 2.025156 GATGGCGCCAATGCTTCG 59.975 61.111 36.33 0.00 34.43 3.79
2980 3220 3.104766 CGCCAATGCTTCGCTCAT 58.895 55.556 0.00 0.00 34.43 2.90
2994 3234 1.591059 CTCATGGAGAAGCCGAGCG 60.591 63.158 0.00 0.00 40.66 5.03
2995 3235 2.587194 CATGGAGAAGCCGAGCGG 60.587 66.667 4.20 4.20 40.66 5.52
2996 3236 3.077556 ATGGAGAAGCCGAGCGGT 61.078 61.111 10.94 0.00 40.66 5.68
2997 3237 2.660064 ATGGAGAAGCCGAGCGGTT 61.660 57.895 10.94 0.87 40.66 4.44
3001 3241 3.169198 GAAGCCGAGCGGTTCAAG 58.831 61.111 10.94 0.00 46.27 3.02
3002 3242 3.028366 GAAGCCGAGCGGTTCAAGC 62.028 63.158 10.94 0.00 46.27 4.01
3005 3245 4.394712 CCGAGCGGTTCAAGCCCT 62.395 66.667 0.00 0.00 34.64 5.19
3010 3250 2.125512 CGGTTCAAGCCCTCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
3070 3310 2.186903 CCCCGACGACATTCAGGG 59.813 66.667 0.00 0.00 41.68 4.45
3090 3330 0.526211 CGACGTGAAGATCCCTGTCA 59.474 55.000 0.00 0.00 0.00 3.58
3095 3335 0.251354 TGAAGATCCCTGTCAGCAGC 59.749 55.000 0.00 0.00 41.26 5.25
3138 3378 4.335416 GACAGATTCATTCCCAAAGGACA 58.665 43.478 0.00 0.00 43.90 4.02
3141 3381 4.159135 CAGATTCATTCCCAAAGGACAAGG 59.841 45.833 0.00 0.00 43.90 3.61
3142 3382 2.603075 TCATTCCCAAAGGACAAGGG 57.397 50.000 0.00 0.00 43.90 3.95
3147 3387 1.153756 CCAAAGGACAAGGGGCTGT 59.846 57.895 0.00 0.00 0.00 4.40
3150 3390 0.555769 AAAGGACAAGGGGCTGTCAA 59.444 50.000 7.54 0.00 46.31 3.18
3151 3391 0.111253 AAGGACAAGGGGCTGTCAAG 59.889 55.000 7.54 0.00 46.31 3.02
3155 3398 0.538287 ACAAGGGGCTGTCAAGAAGC 60.538 55.000 0.00 0.00 40.06 3.86
3158 3401 0.407139 AGGGGCTGTCAAGAAGCAAT 59.593 50.000 0.00 0.00 42.69 3.56
3161 3404 0.108945 GGCTGTCAAGAAGCAATGGC 60.109 55.000 0.00 0.00 42.69 4.40
3164 3407 1.822990 CTGTCAAGAAGCAATGGCCAT 59.177 47.619 14.09 14.09 42.56 4.40
3168 3411 3.101437 TCAAGAAGCAATGGCCATGATT 58.899 40.909 21.63 17.85 42.56 2.57
3169 3412 3.516300 TCAAGAAGCAATGGCCATGATTT 59.484 39.130 21.63 13.58 42.56 2.17
3170 3413 4.020039 TCAAGAAGCAATGGCCATGATTTT 60.020 37.500 21.63 11.69 42.56 1.82
3182 3449 2.947652 CCATGATTTTGAGCTCGGACAT 59.052 45.455 9.64 7.44 0.00 3.06
3193 3460 2.233676 AGCTCGGACATGACACATACAA 59.766 45.455 0.00 0.00 0.00 2.41
3203 3470 7.066163 GGACATGACACATACAAAGATGATGAA 59.934 37.037 0.00 0.00 0.00 2.57
3233 3509 1.002366 CAGCGAGGCAGTTGTATGAC 58.998 55.000 0.00 0.00 0.00 3.06
3236 3512 0.806102 CGAGGCAGTTGTATGACCCG 60.806 60.000 0.00 0.00 0.00 5.28
3238 3514 1.376683 GGCAGTTGTATGACCCGCA 60.377 57.895 0.00 0.00 0.00 5.69
3239 3515 1.644786 GGCAGTTGTATGACCCGCAC 61.645 60.000 0.00 0.00 0.00 5.34
3240 3516 1.966493 GCAGTTGTATGACCCGCACG 61.966 60.000 0.00 0.00 0.00 5.34
3241 3517 1.079405 AGTTGTATGACCCGCACGG 60.079 57.895 1.02 1.02 37.81 4.94
3267 3543 0.179108 GGCTACTTCTGGTAGGTGCG 60.179 60.000 5.19 0.00 45.83 5.34
3276 3552 2.813908 GTAGGTGCGGCGTTCCAG 60.814 66.667 20.24 0.00 0.00 3.86
3297 3573 4.504132 GCTCAGGCTTCACGGTAG 57.496 61.111 0.00 0.00 35.22 3.18
3298 3574 1.153549 GCTCAGGCTTCACGGTAGG 60.154 63.158 0.00 0.00 35.22 3.18
3299 3575 1.517832 CTCAGGCTTCACGGTAGGG 59.482 63.158 0.00 0.00 0.00 3.53
3300 3576 1.961180 CTCAGGCTTCACGGTAGGGG 61.961 65.000 0.00 0.00 0.00 4.79
3301 3577 2.687566 AGGCTTCACGGTAGGGGG 60.688 66.667 0.00 0.00 0.00 5.40
3302 3578 4.484872 GGCTTCACGGTAGGGGGC 62.485 72.222 0.00 0.00 0.00 5.80
3303 3579 4.832608 GCTTCACGGTAGGGGGCG 62.833 72.222 0.00 0.00 0.00 6.13
3304 3580 4.832608 CTTCACGGTAGGGGGCGC 62.833 72.222 0.00 0.00 0.00 6.53
3307 3583 4.832608 CACGGTAGGGGGCGCTTC 62.833 72.222 7.64 0.00 0.00 3.86
3347 3623 0.323542 GACTCCCGGAAGACCTGAGA 60.324 60.000 0.73 0.00 36.71 3.27
3359 3635 2.747855 CTGAGAAAGGGTGGCGGC 60.748 66.667 0.00 0.00 0.00 6.53
3451 3733 0.593773 GCGTGTGTTTGCCGTTGATT 60.594 50.000 0.00 0.00 0.00 2.57
3452 3734 1.119635 CGTGTGTTTGCCGTTGATTG 58.880 50.000 0.00 0.00 0.00 2.67
3453 3735 1.532921 CGTGTGTTTGCCGTTGATTGT 60.533 47.619 0.00 0.00 0.00 2.71
3454 3736 2.535331 GTGTGTTTGCCGTTGATTGTT 58.465 42.857 0.00 0.00 0.00 2.83
3470 3752 4.092821 TGATTGTTTGTCTATAGCGTGTGC 59.907 41.667 0.00 0.00 43.24 4.57
3549 3838 1.008079 GTTGTCAAGCACAGCCAGC 60.008 57.895 0.00 0.00 35.97 4.85
3561 3850 4.043200 GCCAGCTTGTTCACCGGC 62.043 66.667 0.00 0.00 0.00 6.13
3562 3851 2.281761 CCAGCTTGTTCACCGGCT 60.282 61.111 0.00 0.00 35.23 5.52
3563 3852 2.949106 CAGCTTGTTCACCGGCTG 59.051 61.111 0.00 0.00 44.45 4.85
3659 3955 4.130281 CGTCGCTTTTCGCCGGTC 62.130 66.667 1.90 0.00 38.27 4.79
3711 4012 2.033424 GGTGACTGAAACTGAAACAGCC 59.967 50.000 0.00 0.00 34.37 4.85
3712 4013 2.682856 GTGACTGAAACTGAAACAGCCA 59.317 45.455 0.00 0.00 34.37 4.75
3713 4014 2.945008 TGACTGAAACTGAAACAGCCAG 59.055 45.455 0.00 0.00 34.37 4.85
3714 4015 2.945668 GACTGAAACTGAAACAGCCAGT 59.054 45.455 15.83 15.83 45.88 4.00
3740 4042 3.916392 CTGTCGTCTGGCCGGTGTC 62.916 68.421 12.43 4.27 0.00 3.67
3791 4097 2.898738 CGTGCCTGCTCCATCTCT 59.101 61.111 0.00 0.00 0.00 3.10
3828 6307 1.727857 GCGTTTGTAAAGGCATCCACG 60.728 52.381 14.89 0.00 46.01 4.94
3842 6321 3.725490 CATCCACGACACTCATGATGAT 58.275 45.455 0.00 0.00 33.20 2.45
3849 6330 2.538861 GACACTCATGATGATGACAGCG 59.461 50.000 0.00 0.00 34.71 5.18
3951 6432 0.395586 TTGCCTCCAGTTGCAACAGT 60.396 50.000 30.11 9.01 42.19 3.55
4004 6485 3.862402 CTGTGCGCTGCAGCTAGC 61.862 66.667 34.22 29.78 40.08 3.42
4005 6486 4.383861 TGTGCGCTGCAGCTAGCT 62.384 61.111 34.22 12.68 45.94 3.32
4032 6513 1.004440 AGTCTGCCTTCGCTGGAAC 60.004 57.895 0.00 0.00 34.85 3.62
4033 6514 2.035442 GTCTGCCTTCGCTGGAACC 61.035 63.158 0.00 0.00 34.85 3.62
4034 6515 2.217038 TCTGCCTTCGCTGGAACCT 61.217 57.895 0.00 0.00 34.85 3.50
4035 6516 2.032528 TGCCTTCGCTGGAACCTG 59.967 61.111 0.00 0.00 35.36 4.00
4037 6518 2.328099 GCCTTCGCTGGAACCTGTG 61.328 63.158 5.19 5.19 0.00 3.66
4038 6519 2.328099 CCTTCGCTGGAACCTGTGC 61.328 63.158 6.44 1.49 0.00 4.57
4039 6520 1.597854 CTTCGCTGGAACCTGTGCA 60.598 57.895 6.44 0.00 0.00 4.57
4048 6529 1.423395 GAACCTGTGCAGAACTCTCG 58.577 55.000 0.02 0.00 0.00 4.04
4049 6530 0.753262 AACCTGTGCAGAACTCTCGT 59.247 50.000 0.02 0.00 0.00 4.18
4050 6531 1.617322 ACCTGTGCAGAACTCTCGTA 58.383 50.000 0.02 0.00 0.00 3.43
4051 6532 1.961394 ACCTGTGCAGAACTCTCGTAA 59.039 47.619 0.02 0.00 0.00 3.18
4052 6533 2.364324 ACCTGTGCAGAACTCTCGTAAA 59.636 45.455 0.02 0.00 0.00 2.01
4053 6534 3.181469 ACCTGTGCAGAACTCTCGTAAAA 60.181 43.478 0.02 0.00 0.00 1.52
4054 6535 3.184581 CCTGTGCAGAACTCTCGTAAAAC 59.815 47.826 0.02 0.00 0.00 2.43
4055 6536 4.051922 CTGTGCAGAACTCTCGTAAAACT 58.948 43.478 0.00 0.00 0.00 2.66
4056 6537 3.802139 TGTGCAGAACTCTCGTAAAACTG 59.198 43.478 0.00 0.00 0.00 3.16
4057 6538 2.800544 TGCAGAACTCTCGTAAAACTGC 59.199 45.455 0.00 0.00 45.92 4.40
4058 6539 2.157863 GCAGAACTCTCGTAAAACTGCC 59.842 50.000 0.00 0.00 41.88 4.85
4059 6540 2.408704 CAGAACTCTCGTAAAACTGCCG 59.591 50.000 0.00 0.00 0.00 5.69
4060 6541 1.126296 GAACTCTCGTAAAACTGCCGC 59.874 52.381 0.00 0.00 0.00 6.53
4061 6542 0.669625 ACTCTCGTAAAACTGCCGCC 60.670 55.000 0.00 0.00 0.00 6.13
4062 6543 0.669318 CTCTCGTAAAACTGCCGCCA 60.669 55.000 0.00 0.00 0.00 5.69
4063 6544 0.669318 TCTCGTAAAACTGCCGCCAG 60.669 55.000 0.00 0.00 44.80 4.85
4064 6545 2.175811 CGTAAAACTGCCGCCAGC 59.824 61.111 0.00 0.00 43.02 4.85
4065 6546 2.325082 CGTAAAACTGCCGCCAGCT 61.325 57.895 0.00 0.00 43.02 4.24
4066 6547 1.852067 CGTAAAACTGCCGCCAGCTT 61.852 55.000 0.00 0.00 43.02 3.74
4067 6548 0.109735 GTAAAACTGCCGCCAGCTTC 60.110 55.000 0.00 0.00 43.02 3.86
4068 6549 1.241315 TAAAACTGCCGCCAGCTTCC 61.241 55.000 0.00 0.00 43.02 3.46
4074 6555 4.473520 CCGCCAGCTTCCCACGAT 62.474 66.667 0.00 0.00 0.00 3.73
4075 6556 3.197790 CGCCAGCTTCCCACGATG 61.198 66.667 0.00 0.00 0.00 3.84
4076 6557 2.268920 GCCAGCTTCCCACGATGA 59.731 61.111 0.00 0.00 0.00 2.92
4077 6558 2.109126 GCCAGCTTCCCACGATGAC 61.109 63.158 0.00 0.00 0.00 3.06
4078 6559 1.599047 CCAGCTTCCCACGATGACT 59.401 57.895 0.00 0.00 0.00 3.41
4079 6560 0.742281 CCAGCTTCCCACGATGACTG 60.742 60.000 0.00 0.00 0.00 3.51
4083 6564 0.608130 CTTCCCACGATGACTGTCCA 59.392 55.000 5.17 0.00 0.00 4.02
4121 6602 1.134670 CCTAAGCAGCCTACCAGACAC 60.135 57.143 0.00 0.00 0.00 3.67
4130 6611 1.877576 CTACCAGACACGAGCCTGCA 61.878 60.000 0.00 0.00 0.00 4.41
4157 6661 3.205056 AGGATGCAAATGGGTATTCTCCA 59.795 43.478 0.00 0.00 38.82 3.86
4174 6678 6.937436 TTCTCCAAACCTCTTTAGTTCAAC 57.063 37.500 0.00 0.00 0.00 3.18
4260 6786 3.054065 CCCTAGCTGAGATTGGAAAAGGT 60.054 47.826 0.00 0.00 0.00 3.50
4293 6819 6.006449 AGTTGATTCAAATGCCAGTAAGACT 58.994 36.000 0.00 0.00 0.00 3.24
4313 6839 7.113658 AGACTATACACCTACACTCCAAATG 57.886 40.000 0.00 0.00 0.00 2.32
4315 6841 2.200373 ACACCTACACTCCAAATGCC 57.800 50.000 0.00 0.00 0.00 4.40
4345 6884 3.971245 AGAGACCTCTGATTTGACCAC 57.029 47.619 0.00 0.00 38.75 4.16
4394 6933 8.746530 CCTGTAAATATAAGCCTAATAGGTCGA 58.253 37.037 8.28 0.00 37.80 4.20
4469 7011 8.605325 TCATACCCCCTAAAGCTACTAATATC 57.395 38.462 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 100 3.181476 GGGAGCAAATGTGTGTTTCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
81 106 0.467290 ACGGGGAGCAAATGTGTGTT 60.467 50.000 0.00 0.00 0.00 3.32
113 138 4.160439 GGCCTTCGTAGGATGATGATGATA 59.840 45.833 12.94 0.00 45.05 2.15
160 185 0.108472 CCGCACTTCTCTCATGCTCA 60.108 55.000 0.00 0.00 37.20 4.26
161 186 0.809241 CCCGCACTTCTCTCATGCTC 60.809 60.000 0.00 0.00 37.20 4.26
162 187 1.220206 CCCGCACTTCTCTCATGCT 59.780 57.895 0.00 0.00 37.20 3.79
163 188 1.078848 ACCCGCACTTCTCTCATGC 60.079 57.895 0.00 0.00 35.96 4.06
164 189 0.036952 ACACCCGCACTTCTCTCATG 60.037 55.000 0.00 0.00 0.00 3.07
165 190 0.036952 CACACCCGCACTTCTCTCAT 60.037 55.000 0.00 0.00 0.00 2.90
166 191 1.367471 CACACCCGCACTTCTCTCA 59.633 57.895 0.00 0.00 0.00 3.27
167 192 2.029844 GCACACCCGCACTTCTCTC 61.030 63.158 0.00 0.00 0.00 3.20
168 193 2.031163 GCACACCCGCACTTCTCT 59.969 61.111 0.00 0.00 0.00 3.10
169 194 1.237285 AATGCACACCCGCACTTCTC 61.237 55.000 0.00 0.00 46.56 2.87
244 277 1.079127 CAAGGAGGCCGTGACGAAT 60.079 57.895 6.54 0.00 35.05 3.34
252 286 2.919494 GCACCAAACAAGGAGGCCG 61.919 63.158 0.00 0.00 0.00 6.13
259 293 1.002900 CCACGTACTGCACCAAACAAG 60.003 52.381 0.00 0.00 0.00 3.16
302 336 1.576421 GCTCACCGCTTCCAACAAG 59.424 57.895 0.00 0.00 35.14 3.16
312 346 3.128589 TCATTTAAATCCAAGCTCACCGC 59.871 43.478 0.00 0.00 39.57 5.68
323 357 7.519008 CGACTTGCTATGACCTCATTTAAATCC 60.519 40.741 0.00 0.00 37.76 3.01
357 391 0.168788 TACTACGACCGCACGGAAAG 59.831 55.000 17.40 8.70 38.96 2.62
371 405 2.500098 TCACCAACCAGCCTCATACTAC 59.500 50.000 0.00 0.00 0.00 2.73
372 406 2.766263 CTCACCAACCAGCCTCATACTA 59.234 50.000 0.00 0.00 0.00 1.82
373 407 1.556911 CTCACCAACCAGCCTCATACT 59.443 52.381 0.00 0.00 0.00 2.12
416 458 0.173481 GCCCCGCTTGGAATCTTTTC 59.827 55.000 0.00 0.00 35.39 2.29
457 499 0.400213 AATCCAAACTGTCGCTGGGA 59.600 50.000 0.00 0.00 0.00 4.37
458 500 1.247567 AAATCCAAACTGTCGCTGGG 58.752 50.000 4.33 0.00 0.00 4.45
459 501 2.664916 CAAAATCCAAACTGTCGCTGG 58.335 47.619 0.00 0.00 0.00 4.85
460 502 2.053627 GCAAAATCCAAACTGTCGCTG 58.946 47.619 0.00 0.00 0.00 5.18
468 510 2.995939 GCTTAGGCTGCAAAATCCAAAC 59.004 45.455 0.50 0.00 35.22 2.93
525 581 5.839063 TGTTTATGATGTTTGTGGGGGTAAA 59.161 36.000 0.00 0.00 0.00 2.01
537 593 3.086282 GGGGTCCGTTGTTTATGATGTT 58.914 45.455 0.00 0.00 0.00 2.71
538 594 2.718563 GGGGTCCGTTGTTTATGATGT 58.281 47.619 0.00 0.00 0.00 3.06
574 651 2.232298 CTTCTGGCTGGACGGAGGTC 62.232 65.000 0.00 0.00 42.66 3.85
705 787 0.323816 ACGAGGACCATGAGAGCTGA 60.324 55.000 0.00 0.00 0.00 4.26
706 788 0.179116 CACGAGGACCATGAGAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
708 790 1.520342 GCACGAGGACCATGAGAGC 60.520 63.158 0.00 0.00 0.00 4.09
709 791 0.247460 TTGCACGAGGACCATGAGAG 59.753 55.000 0.00 0.00 0.00 3.20
712 794 1.374125 CGTTGCACGAGGACCATGA 60.374 57.895 0.00 0.00 46.05 3.07
835 931 2.089349 GTTCTCTCGTGCTCGTGCC 61.089 63.158 7.05 0.00 38.71 5.01
888 990 2.805277 GTGACGGTCTACACCAACG 58.195 57.895 9.88 0.00 44.02 4.10
922 1024 2.983592 CAACAACCCCACGCTCCC 60.984 66.667 0.00 0.00 0.00 4.30
932 1034 7.302524 ACGATACAATACAATTGACAACAACC 58.697 34.615 13.59 0.00 38.90 3.77
966 1075 2.995574 CGAACTCACTCCCGGGGT 60.996 66.667 23.50 15.17 0.00 4.95
1291 1416 1.941476 AACGAGACGCGCGAATCAAC 61.941 55.000 39.36 19.75 46.04 3.18
1305 1430 2.202492 CTCCGCGACCTGAACGAG 60.202 66.667 8.23 0.00 0.00 4.18
1462 1587 3.522731 CCAGCTCCTCCTCGTCCG 61.523 72.222 0.00 0.00 0.00 4.79
1463 1588 2.043852 TCCAGCTCCTCCTCGTCC 60.044 66.667 0.00 0.00 0.00 4.79
1464 1589 2.766400 CGTCCAGCTCCTCCTCGTC 61.766 68.421 0.00 0.00 0.00 4.20
1465 1590 2.752238 CGTCCAGCTCCTCCTCGT 60.752 66.667 0.00 0.00 0.00 4.18
1576 1707 0.452585 CTCGTCCTCCTCCTTCGTTC 59.547 60.000 0.00 0.00 0.00 3.95
1592 1723 4.831307 CCGGAAGTCGCGTCCTCG 62.831 72.222 5.77 4.84 37.59 4.63
1593 1724 4.493747 CCCGGAAGTCGCGTCCTC 62.494 72.222 0.73 0.00 37.59 3.71
1801 1932 2.224281 TGCAGAAATGAGGACGACAGTT 60.224 45.455 0.00 0.00 0.00 3.16
1814 1945 4.020928 TGACAAGAATGGCATTGCAGAAAT 60.021 37.500 19.07 0.00 40.56 2.17
1816 1947 2.892215 TGACAAGAATGGCATTGCAGAA 59.108 40.909 19.07 0.00 40.56 3.02
1838 2000 2.031682 AGAACTGCAGCGTGTCAAAATC 60.032 45.455 15.27 0.00 0.00 2.17
1849 2015 2.858622 TGCCATACAGAACTGCAGC 58.141 52.632 15.27 0.00 0.00 5.25
1873 2050 1.347050 ACTCTCTGTCAGTGCTGCAAT 59.653 47.619 2.77 0.00 0.00 3.56
1878 2055 0.250945 TCCGACTCTCTGTCAGTGCT 60.251 55.000 0.00 0.00 45.60 4.40
1881 2058 1.074084 TCCTTCCGACTCTCTGTCAGT 59.926 52.381 0.00 0.00 45.60 3.41
1882 2059 1.827681 TCCTTCCGACTCTCTGTCAG 58.172 55.000 0.00 0.00 45.60 3.51
1885 2062 1.889829 CTGTTCCTTCCGACTCTCTGT 59.110 52.381 0.00 0.00 0.00 3.41
1886 2063 1.403514 GCTGTTCCTTCCGACTCTCTG 60.404 57.143 0.00 0.00 0.00 3.35
1887 2064 0.892063 GCTGTTCCTTCCGACTCTCT 59.108 55.000 0.00 0.00 0.00 3.10
1917 2097 1.144716 ATCATCATCGGTGCAGCGT 59.855 52.632 34.29 20.61 0.00 5.07
1920 2100 1.512996 GGCCATCATCATCGGTGCAG 61.513 60.000 0.00 0.00 0.00 4.41
1924 2104 2.140138 TCCGGCCATCATCATCGGT 61.140 57.895 2.24 0.00 41.27 4.69
1945 2125 1.597027 CCACCTCGCCGTCAAACTT 60.597 57.895 0.00 0.00 0.00 2.66
1989 2169 1.080974 GTACTGACCACCACCGTCG 60.081 63.158 0.00 0.00 32.68 5.12
2027 2207 1.486556 CCCTCTCCATCTCCCCATCAT 60.487 57.143 0.00 0.00 0.00 2.45
2139 2319 4.284234 GGTAGTAGTACCTTGTTGGGTGAA 59.716 45.833 18.13 0.00 45.01 3.18
2156 2336 1.942657 GCTCATACGTCGGTGGTAGTA 59.057 52.381 0.00 0.00 0.00 1.82
2162 2342 0.528466 ATGCAGCTCATACGTCGGTG 60.528 55.000 0.00 0.00 32.59 4.94
2165 2345 3.093574 CAAAAATGCAGCTCATACGTCG 58.906 45.455 0.00 0.00 34.33 5.12
2167 2347 2.415893 GCCAAAAATGCAGCTCATACGT 60.416 45.455 0.00 0.00 34.33 3.57
2168 2348 2.187707 GCCAAAAATGCAGCTCATACG 58.812 47.619 0.00 0.00 34.33 3.06
2169 2349 3.235157 TGCCAAAAATGCAGCTCATAC 57.765 42.857 0.00 0.00 34.33 2.39
2170 2350 3.006644 TGTTGCCAAAAATGCAGCTCATA 59.993 39.130 0.00 0.00 40.18 2.15
2171 2351 2.224329 TGTTGCCAAAAATGCAGCTCAT 60.224 40.909 0.00 0.00 40.18 2.90
2172 2352 1.138464 TGTTGCCAAAAATGCAGCTCA 59.862 42.857 0.00 0.00 40.18 4.26
2173 2353 1.868469 TGTTGCCAAAAATGCAGCTC 58.132 45.000 0.00 0.00 40.18 4.09
2174 2354 2.328819 TTGTTGCCAAAAATGCAGCT 57.671 40.000 0.00 0.00 40.18 4.24
2195 2393 7.375834 TGACGTATTTTGACAGAACTAGTGAT 58.624 34.615 0.00 0.00 0.00 3.06
2199 2397 7.085116 ACTCTGACGTATTTTGACAGAACTAG 58.915 38.462 0.00 0.00 37.60 2.57
2201 2399 5.844004 ACTCTGACGTATTTTGACAGAACT 58.156 37.500 0.00 0.00 37.60 3.01
2244 2445 5.807909 TCATGTCAAATCTCACATCAAGGA 58.192 37.500 0.00 0.00 30.48 3.36
2252 2476 6.252869 GCAATGTTCATCATGTCAAATCTCAC 59.747 38.462 0.00 0.00 36.81 3.51
2272 2496 2.158900 AGAACTATCACCTCCGGCAATG 60.159 50.000 0.00 0.00 0.00 2.82
2284 2508 4.391830 GTCAAATCGGTGCAAGAACTATCA 59.608 41.667 0.00 0.00 0.00 2.15
2287 2511 3.071479 GGTCAAATCGGTGCAAGAACTA 58.929 45.455 0.00 0.00 0.00 2.24
2295 2519 2.038387 AGTATGGGTCAAATCGGTGC 57.962 50.000 0.00 0.00 0.00 5.01
2341 2566 2.012673 GTACCTTGCAATCTGCCTCAG 58.987 52.381 0.00 0.00 44.23 3.35
2355 2580 1.392710 CCTGATCTCGCCGGTACCTT 61.393 60.000 10.90 0.00 0.00 3.50
2358 2583 1.065928 CACCTGATCTCGCCGGTAC 59.934 63.158 1.90 0.00 0.00 3.34
2362 2587 2.021068 ATCACCACCTGATCTCGCCG 62.021 60.000 0.00 0.00 34.07 6.46
2364 2589 2.890808 TTATCACCACCTGATCTCGC 57.109 50.000 0.00 0.00 40.38 5.03
2445 2670 1.268079 GGAGCTTCCTTGTGCTGAAAC 59.732 52.381 0.00 0.00 39.91 2.78
2447 2672 0.473755 TGGAGCTTCCTTGTGCTGAA 59.526 50.000 0.00 0.00 39.91 3.02
2487 2712 0.251077 CCTTGCTGGTCTTGGCTTCT 60.251 55.000 0.00 0.00 0.00 2.85
2541 2766 3.119096 GGAAGACGCGGAGTTGGC 61.119 66.667 12.47 0.00 0.00 4.52
2612 2846 2.333417 TGACGAGCTCCAGTCCGAC 61.333 63.158 16.26 3.14 36.61 4.79
2656 2890 3.380814 TCGACTGTCGACATGACCGTG 62.381 57.143 27.26 7.97 44.82 4.94
2657 2891 1.232621 TCGACTGTCGACATGACCGT 61.233 55.000 27.26 13.07 44.82 4.83
2659 2893 0.798771 GCTCGACTGTCGACATGACC 60.799 60.000 27.26 7.55 44.82 4.02
2660 2894 1.128724 CGCTCGACTGTCGACATGAC 61.129 60.000 27.26 13.69 44.82 3.06
2661 2895 1.134694 CGCTCGACTGTCGACATGA 59.865 57.895 27.26 15.74 44.82 3.07
2662 2896 1.869574 CCGCTCGACTGTCGACATG 60.870 63.158 27.26 18.97 44.82 3.21
2663 2897 2.485582 CCGCTCGACTGTCGACAT 59.514 61.111 27.26 9.45 44.82 3.06
2664 2898 4.400109 GCCGCTCGACTGTCGACA 62.400 66.667 27.26 18.88 44.82 4.35
2673 2907 4.531912 GTCGATGTCGCCGCTCGA 62.532 66.667 0.00 0.00 46.29 4.04
2675 2909 4.831307 ACGTCGATGTCGCCGCTC 62.831 66.667 3.92 0.00 45.01 5.03
2682 2916 1.583967 CGCTCTCCACGTCGATGTC 60.584 63.158 7.47 0.00 0.00 3.06
2798 3032 1.585521 GTCCGCACGGTACTCATCG 60.586 63.158 9.23 0.00 36.47 3.84
2852 3092 1.202698 GGACTTGAGCCACTGTGTTCT 60.203 52.381 7.08 3.37 0.00 3.01
2859 3099 2.584391 GGGACGGACTTGAGCCACT 61.584 63.158 0.00 0.00 0.00 4.00
2860 3100 2.047179 GGGACGGACTTGAGCCAC 60.047 66.667 0.00 0.00 0.00 5.01
2876 3116 2.180204 CGCCAGTATTTCCTGCCGG 61.180 63.158 0.00 0.00 30.32 6.13
2897 3137 2.043248 TAGTCCTCCGGTGCTCCC 60.043 66.667 0.00 0.00 0.00 4.30
2898 3138 2.424733 GGTAGTCCTCCGGTGCTCC 61.425 68.421 0.00 0.00 0.00 4.70
2899 3139 1.043673 ATGGTAGTCCTCCGGTGCTC 61.044 60.000 0.00 0.00 34.23 4.26
2903 3143 2.064581 GCCATGGTAGTCCTCCGGT 61.065 63.158 14.67 0.00 34.23 5.28
2931 3171 4.324563 CCAAAGGCTTTCCTCTCTTCCATA 60.325 45.833 10.08 0.00 43.40 2.74
2939 3179 0.036875 CGACCCAAAGGCTTTCCTCT 59.963 55.000 10.08 0.00 43.40 3.69
2942 3182 0.811281 CATCGACCCAAAGGCTTTCC 59.189 55.000 10.08 0.00 36.11 3.13
2943 3183 0.811281 CCATCGACCCAAAGGCTTTC 59.189 55.000 10.08 0.00 36.11 2.62
2945 3185 1.678970 GCCATCGACCCAAAGGCTT 60.679 57.895 0.00 0.00 42.01 4.35
2946 3186 2.044946 GCCATCGACCCAAAGGCT 60.045 61.111 0.00 0.00 42.01 4.58
2949 3189 3.508840 GGCGCCATCGACCCAAAG 61.509 66.667 24.80 0.00 37.90 2.77
2950 3190 3.851897 TTGGCGCCATCGACCCAAA 62.852 57.895 33.25 9.15 44.89 3.28
2951 3191 3.636929 ATTGGCGCCATCGACCCAA 62.637 57.895 33.25 13.66 44.89 4.12
2952 3192 4.108299 ATTGGCGCCATCGACCCA 62.108 61.111 33.25 14.56 44.89 4.51
2953 3193 3.585990 CATTGGCGCCATCGACCC 61.586 66.667 33.25 0.00 44.89 4.46
2954 3194 4.256090 GCATTGGCGCCATCGACC 62.256 66.667 33.25 13.46 44.89 4.79
2973 3213 2.009424 CTCGGCTTCTCCATGAGCGA 62.009 60.000 0.00 0.00 34.01 4.93
2975 3215 1.886777 GCTCGGCTTCTCCATGAGC 60.887 63.158 0.00 0.00 39.82 4.26
2980 3220 3.296709 GAACCGCTCGGCTTCTCCA 62.297 63.158 8.41 0.00 39.32 3.86
2994 3234 2.269241 CCGAGGAGGGCTTGAACC 59.731 66.667 0.00 0.00 35.97 3.62
3052 3292 3.294750 CCTGAATGTCGTCGGGGA 58.705 61.111 0.00 0.00 40.00 4.81
3054 3294 2.511600 GCCCTGAATGTCGTCGGG 60.512 66.667 0.00 0.00 42.91 5.14
3055 3295 2.885644 CGCCCTGAATGTCGTCGG 60.886 66.667 0.00 0.00 0.00 4.79
3058 3298 2.126071 CGTCGCCCTGAATGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
3059 3299 2.126071 ACGTCGCCCTGAATGTCG 60.126 61.111 0.00 0.00 0.00 4.35
3061 3301 0.670546 CTTCACGTCGCCCTGAATGT 60.671 55.000 0.00 0.00 0.00 2.71
3062 3302 0.389817 TCTTCACGTCGCCCTGAATG 60.390 55.000 0.00 0.00 0.00 2.67
3063 3303 0.537188 ATCTTCACGTCGCCCTGAAT 59.463 50.000 0.00 0.00 0.00 2.57
3064 3304 0.108804 GATCTTCACGTCGCCCTGAA 60.109 55.000 0.00 0.00 0.00 3.02
3065 3305 1.511305 GATCTTCACGTCGCCCTGA 59.489 57.895 0.00 0.00 0.00 3.86
3066 3306 1.519455 GGATCTTCACGTCGCCCTG 60.519 63.158 0.00 0.00 0.00 4.45
3070 3310 0.802607 GACAGGGATCTTCACGTCGC 60.803 60.000 0.00 0.00 0.00 5.19
3122 3362 2.492567 CCCCTTGTCCTTTGGGAATGAA 60.493 50.000 0.00 0.00 44.15 2.57
3138 3378 0.185901 TTGCTTCTTGACAGCCCCTT 59.814 50.000 0.00 0.00 36.33 3.95
3141 3381 0.529378 CCATTGCTTCTTGACAGCCC 59.471 55.000 0.00 0.00 36.33 5.19
3142 3382 0.108945 GCCATTGCTTCTTGACAGCC 60.109 55.000 0.00 0.00 36.33 4.85
3147 3387 2.219080 TCATGGCCATTGCTTCTTGA 57.781 45.000 17.92 6.38 37.74 3.02
3150 3390 3.516300 TCAAAATCATGGCCATTGCTTCT 59.484 39.130 17.92 0.00 37.74 2.85
3151 3391 3.864243 TCAAAATCATGGCCATTGCTTC 58.136 40.909 17.92 0.00 37.74 3.86
3155 3398 3.454375 GAGCTCAAAATCATGGCCATTG 58.546 45.455 17.92 12.89 0.00 2.82
3158 3401 1.097232 CGAGCTCAAAATCATGGCCA 58.903 50.000 8.56 8.56 0.00 5.36
3161 3404 2.358957 TGTCCGAGCTCAAAATCATGG 58.641 47.619 15.40 4.03 0.00 3.66
3164 3407 3.002791 GTCATGTCCGAGCTCAAAATCA 58.997 45.455 15.40 5.61 0.00 2.57
3168 3411 1.069978 TGTGTCATGTCCGAGCTCAAA 59.930 47.619 15.40 0.00 0.00 2.69
3169 3412 0.678950 TGTGTCATGTCCGAGCTCAA 59.321 50.000 15.40 0.00 0.00 3.02
3170 3413 0.897621 ATGTGTCATGTCCGAGCTCA 59.102 50.000 15.40 0.00 0.00 4.26
3182 3449 6.093082 CAGCTTCATCATCTTTGTATGTGTCA 59.907 38.462 0.00 0.00 0.00 3.58
3193 3460 3.245371 TGAAACCCCAGCTTCATCATCTT 60.245 43.478 0.00 0.00 0.00 2.40
3220 3496 1.376683 TGCGGGTCATACAACTGCC 60.377 57.895 0.00 0.00 0.00 4.85
3238 3514 3.637926 GAAGTAGCCGCGGAACCGT 62.638 63.158 33.48 16.33 42.09 4.83
3239 3515 2.884207 GAAGTAGCCGCGGAACCG 60.884 66.667 33.48 9.00 43.09 4.44
3240 3516 1.810030 CAGAAGTAGCCGCGGAACC 60.810 63.158 33.48 15.18 0.00 3.62
3241 3517 1.810030 CCAGAAGTAGCCGCGGAAC 60.810 63.158 33.48 25.50 0.00 3.62
3242 3518 0.966875 TACCAGAAGTAGCCGCGGAA 60.967 55.000 33.48 13.92 0.00 4.30
3243 3519 1.378911 TACCAGAAGTAGCCGCGGA 60.379 57.895 33.48 5.65 0.00 5.54
3244 3520 1.065928 CTACCAGAAGTAGCCGCGG 59.934 63.158 24.05 24.05 42.06 6.46
3245 3521 1.065928 CCTACCAGAAGTAGCCGCG 59.934 63.158 0.00 0.00 46.21 6.46
3246 3522 0.179108 CACCTACCAGAAGTAGCCGC 60.179 60.000 0.00 0.00 46.21 6.53
3247 3523 0.179108 GCACCTACCAGAAGTAGCCG 60.179 60.000 0.00 0.00 46.21 5.52
3248 3524 0.179108 CGCACCTACCAGAAGTAGCC 60.179 60.000 0.00 0.00 46.21 3.93
3249 3525 0.179108 CCGCACCTACCAGAAGTAGC 60.179 60.000 0.00 0.00 46.21 3.58
3267 3543 2.669569 TGAGCTTGCTGGAACGCC 60.670 61.111 0.00 0.00 0.00 5.68
3290 3566 4.832608 GAAGCGCCCCCTACCGTG 62.833 72.222 2.29 0.00 0.00 4.94
3294 3570 4.525949 GACCGAAGCGCCCCCTAC 62.526 72.222 2.29 0.00 0.00 3.18
3299 3575 4.516195 GAGAGGACCGAAGCGCCC 62.516 72.222 2.29 0.00 0.00 6.13
3300 3576 3.453679 AGAGAGGACCGAAGCGCC 61.454 66.667 2.29 0.00 0.00 6.53
3301 3577 2.202676 CAGAGAGGACCGAAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
3302 3578 2.492090 CCAGAGAGGACCGAAGCG 59.508 66.667 0.00 0.00 41.22 4.68
3303 3579 1.045911 ATCCCAGAGAGGACCGAAGC 61.046 60.000 0.00 0.00 39.24 3.86
3304 3580 1.036707 GATCCCAGAGAGGACCGAAG 58.963 60.000 0.00 0.00 39.24 3.79
3305 3581 0.397254 GGATCCCAGAGAGGACCGAA 60.397 60.000 0.00 0.00 39.24 4.30
3306 3582 1.230497 GGATCCCAGAGAGGACCGA 59.770 63.158 0.00 0.00 39.24 4.69
3307 3583 1.834822 GGGATCCCAGAGAGGACCG 60.835 68.421 26.95 0.00 39.24 4.79
3308 3584 1.314867 TGGGATCCCAGAGAGGACC 59.685 63.158 30.62 0.00 41.89 4.46
3366 3642 2.511600 GAACAGGTCCGCATCCCG 60.512 66.667 0.00 0.00 0.00 5.14
3368 3644 1.718757 GCATGAACAGGTCCGCATCC 61.719 60.000 0.00 0.00 0.00 3.51
3371 3647 1.672030 CTGCATGAACAGGTCCGCA 60.672 57.895 0.00 0.07 33.85 5.69
3400 3676 6.902341 TCAACTTGTTAGAAATGATGCACTC 58.098 36.000 0.00 0.00 0.00 3.51
3401 3677 6.882610 TCAACTTGTTAGAAATGATGCACT 57.117 33.333 0.00 0.00 0.00 4.40
3404 3680 6.564854 GCATCAACTTGTTAGAAATGATGC 57.435 37.500 18.95 18.95 46.10 3.91
3405 3681 7.310664 ACAGCATCAACTTGTTAGAAATGATG 58.689 34.615 8.73 8.73 39.97 3.07
3407 3683 6.882610 ACAGCATCAACTTGTTAGAAATGA 57.117 33.333 0.00 0.00 0.00 2.57
3470 3752 0.593128 CACAGGAAAAAGCCGACCAG 59.407 55.000 0.00 0.00 0.00 4.00
3549 3838 2.639286 GTGCAGCCGGTGAACAAG 59.361 61.111 1.90 0.00 34.27 3.16
3563 3852 0.811616 CTTATCTCCACTGCCGGTGC 60.812 60.000 1.90 0.00 44.08 5.01
3684 3985 1.762370 TCAGTTTCAGTCACCTGCAGA 59.238 47.619 17.39 0.00 38.66 4.26
3703 4004 1.678101 AGCACTCAAACTGGCTGTTTC 59.322 47.619 18.11 8.20 46.11 2.78
3711 4012 1.524355 CAGACGACAGCACTCAAACTG 59.476 52.381 0.00 0.00 39.86 3.16
3712 4013 1.539065 CCAGACGACAGCACTCAAACT 60.539 52.381 0.00 0.00 0.00 2.66
3713 4014 0.861837 CCAGACGACAGCACTCAAAC 59.138 55.000 0.00 0.00 0.00 2.93
3714 4015 0.880278 GCCAGACGACAGCACTCAAA 60.880 55.000 0.00 0.00 0.00 2.69
3791 4097 2.444706 CCGAGAGAGGATGGGCCA 60.445 66.667 9.61 9.61 40.02 5.36
3828 6307 2.538861 CGCTGTCATCATCATGAGTGTC 59.461 50.000 0.09 0.00 39.86 3.67
3842 6321 1.227118 TTCACGCACTTCGCTGTCA 60.227 52.632 0.00 0.00 43.23 3.58
3849 6330 2.032178 AGAAGCAAAGTTCACGCACTTC 59.968 45.455 0.00 0.00 35.87 3.01
3951 6432 1.925415 GCAGCAACACGCCATGATGA 61.925 55.000 0.00 0.00 44.04 2.92
4002 6483 3.076092 CAGACTGGAAGGGCAGCT 58.924 61.111 0.00 0.00 39.30 4.24
4003 6484 2.749441 GCAGACTGGAAGGGCAGC 60.749 66.667 4.26 0.00 39.30 5.25
4004 6485 2.045536 GGCAGACTGGAAGGGCAG 60.046 66.667 4.26 0.00 39.30 4.85
4005 6486 2.129555 GAAGGCAGACTGGAAGGGCA 62.130 60.000 4.26 0.00 39.30 5.36
4032 6513 2.724977 TTACGAGAGTTCTGCACAGG 57.275 50.000 0.00 0.00 46.40 4.00
4033 6514 4.051922 AGTTTTACGAGAGTTCTGCACAG 58.948 43.478 0.00 0.00 46.40 3.66
4034 6515 3.802139 CAGTTTTACGAGAGTTCTGCACA 59.198 43.478 0.00 0.00 46.40 4.57
4035 6516 3.363084 GCAGTTTTACGAGAGTTCTGCAC 60.363 47.826 8.95 0.00 46.40 4.57
4037 6518 2.157863 GGCAGTTTTACGAGAGTTCTGC 59.842 50.000 0.00 0.00 46.40 4.26
4038 6519 2.408704 CGGCAGTTTTACGAGAGTTCTG 59.591 50.000 0.00 0.00 46.40 3.02
4039 6520 2.673833 CGGCAGTTTTACGAGAGTTCT 58.326 47.619 0.00 0.00 46.40 3.01
4040 6521 1.126296 GCGGCAGTTTTACGAGAGTTC 59.874 52.381 0.00 0.00 46.40 3.01
4043 6524 0.669318 TGGCGGCAGTTTTACGAGAG 60.669 55.000 7.97 0.00 0.00 3.20
4044 6525 0.669318 CTGGCGGCAGTTTTACGAGA 60.669 55.000 29.42 0.00 0.00 4.04
4048 6529 0.109735 GAAGCTGGCGGCAGTTTTAC 60.110 55.000 34.87 22.65 44.79 2.01
4049 6530 1.241315 GGAAGCTGGCGGCAGTTTTA 61.241 55.000 34.87 3.28 44.79 1.52
4050 6531 2.564721 GGAAGCTGGCGGCAGTTTT 61.565 57.895 34.87 28.94 44.79 2.43
4051 6532 2.985847 GGAAGCTGGCGGCAGTTT 60.986 61.111 35.05 35.05 44.79 2.66
4057 6538 4.473520 ATCGTGGGAAGCTGGCGG 62.474 66.667 0.00 0.00 0.00 6.13
4058 6539 3.197790 CATCGTGGGAAGCTGGCG 61.198 66.667 0.00 0.00 0.00 5.69
4059 6540 2.109126 GTCATCGTGGGAAGCTGGC 61.109 63.158 0.00 0.00 0.00 4.85
4060 6541 0.742281 CAGTCATCGTGGGAAGCTGG 60.742 60.000 0.00 0.00 0.00 4.85
4061 6542 0.036952 ACAGTCATCGTGGGAAGCTG 60.037 55.000 0.00 0.00 0.00 4.24
4062 6543 0.247736 GACAGTCATCGTGGGAAGCT 59.752 55.000 0.00 0.00 0.00 3.74
4063 6544 0.741221 GGACAGTCATCGTGGGAAGC 60.741 60.000 2.17 0.00 0.00 3.86
4064 6545 0.608130 TGGACAGTCATCGTGGGAAG 59.392 55.000 2.17 0.00 0.00 3.46
4065 6546 1.052617 TTGGACAGTCATCGTGGGAA 58.947 50.000 2.17 0.00 0.00 3.97
4066 6547 1.001974 CTTTGGACAGTCATCGTGGGA 59.998 52.381 2.17 0.00 0.00 4.37
4067 6548 1.442769 CTTTGGACAGTCATCGTGGG 58.557 55.000 2.17 0.00 0.00 4.61
4068 6549 0.798776 GCTTTGGACAGTCATCGTGG 59.201 55.000 2.17 0.00 0.00 4.94
4069 6550 1.728971 GAGCTTTGGACAGTCATCGTG 59.271 52.381 2.17 0.00 0.00 4.35
4070 6551 1.670087 CGAGCTTTGGACAGTCATCGT 60.670 52.381 2.17 0.00 0.00 3.73
4071 6552 0.994995 CGAGCTTTGGACAGTCATCG 59.005 55.000 2.17 0.00 0.00 3.84
4072 6553 1.363744 CCGAGCTTTGGACAGTCATC 58.636 55.000 2.17 0.00 0.00 2.92
4073 6554 0.674895 GCCGAGCTTTGGACAGTCAT 60.675 55.000 9.95 0.00 0.00 3.06
4074 6555 1.301716 GCCGAGCTTTGGACAGTCA 60.302 57.895 9.95 0.00 0.00 3.41
4075 6556 2.383527 CGCCGAGCTTTGGACAGTC 61.384 63.158 9.95 0.00 0.00 3.51
4076 6557 2.357517 CGCCGAGCTTTGGACAGT 60.358 61.111 9.95 0.00 0.00 3.55
4077 6558 2.048222 TCGCCGAGCTTTGGACAG 60.048 61.111 9.95 1.21 0.00 3.51
4078 6559 2.357034 GTCGCCGAGCTTTGGACA 60.357 61.111 9.95 0.00 0.00 4.02
4079 6560 3.479269 CGTCGCCGAGCTTTGGAC 61.479 66.667 9.95 4.44 35.63 4.02
4083 6564 4.664677 ACTGCGTCGCCGAGCTTT 62.665 61.111 15.88 0.00 35.63 3.51
4100 6581 1.273041 TGTCTGGTAGGCTGCTTAGGA 60.273 52.381 1.79 0.00 0.00 2.94
4105 6586 1.599606 CTCGTGTCTGGTAGGCTGCT 61.600 60.000 1.79 0.00 0.00 4.24
4121 6602 1.002033 GCATCCTTAATTGCAGGCTCG 60.002 52.381 1.34 0.00 38.72 5.03
4130 6611 7.015584 GGAGAATACCCATTTGCATCCTTAATT 59.984 37.037 0.00 0.00 0.00 1.40
4205 6729 4.828296 CCCCATGGCACCCTCTGC 62.828 72.222 6.09 0.00 46.31 4.26
4226 6750 3.887716 CTCAGCTAGGGATGGAAATTTGG 59.112 47.826 0.00 0.00 0.00 3.28
4234 6758 2.333069 TCCAATCTCAGCTAGGGATGG 58.667 52.381 0.09 0.88 0.00 3.51
4260 6786 8.402798 TGGCATTTGAATCAACTCTTTAAGTA 57.597 30.769 0.00 0.00 37.17 2.24
4293 6819 4.471747 TGGCATTTGGAGTGTAGGTGTATA 59.528 41.667 0.00 0.00 0.00 1.47
4313 6839 2.093235 AGAGGTCTCTTTGCATACTGGC 60.093 50.000 0.00 0.00 36.31 4.85
4315 6841 4.462508 TCAGAGGTCTCTTTGCATACTG 57.537 45.455 0.00 0.00 37.98 2.74
4345 6884 6.540189 AGGAATCAAATATCTGACTTCCAACG 59.460 38.462 16.20 0.00 36.49 4.10
4387 6926 1.528542 CTGGGCTCCGATCGACCTA 60.529 63.158 18.66 11.81 0.00 3.08
4411 6952 2.271800 GATGCGGTAAGTGGTCTGAAG 58.728 52.381 0.00 0.00 0.00 3.02
4469 7011 2.113860 TGAGGGATTTTGCTCTTCCG 57.886 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.