>input_sequence_30312
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--------------------------------------------------------------------GCACGTCGTACG
TGCAGCTCGGGTAGCTCGTGTCCAGTGCGGCCGACGACCACCGGCCCGGGCTGCCGTTCTGGAGCGGACGGGGGACAC-T
GGTGTGTGCATGCCGA----GGTTGTGAGCGTGCGCGGATGGCGGACCATGCGGCGGCGG---CGGCGCCCATGACCATC
GACTTCCTCCGCGCGCGCCTGCTCTCCGAGCGCTCCGTCTCACGGGCCTCCAAGGAGCGCGCCGACCAGCTCGCCGCCAG
GGTACGTATGCTGCGCGCGCATTCTTGTGGATGCCAATGTCGGC--------GCCGTTGATTCGCGCGTCTCGTTCAGGT
CGCGGAGCTGGAGGAGCAGGTCCGGGCGGTGACGGCGCAGCGGCGGCAAGCGGAGCGGGAGGCCGCGGAGGTGCTGGCCG
TCCTGGAGTCCCGGGGCTTCTGCGGCAGCCTCTCGGACGTACTCGACTCGGGCTCCGACGACGACGCGGACGAGGAGGAG
CTGGACGAGCCACGCGACGCCACGGTCACCACCGGCGACCCTGCGCCCCGCTCCCACGGCGAGGAGGGAC------AGGA
GCAGGAGCAGCCGCCGGCGAAGGGCGGAACGAAGGAGGAGGACGAGGACGCGACTTCCGGGACGGCCCTGCAGCCGGGCG
GGCTGTCGTGGAAAGGCCGGTGCGCGAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTAC
TTCCTGGCCTCGCAGTCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAG
GTCTCGCCATTAACTGTCGTCCTCATT-------------------------------TCTGCAATGCCATTCTTGTCAG
--AT--TTTGACACGCTGCAGTTCTGT-----------ATGGCAGTAGCATTGCAGCACTGACA---GAGAGTCGGAAGG
AACAGCGAGATGGACCACGCTGCACCGATGATGATGGCCGGACCAAGTTTGACGGCGAGGTGGGCGGAGACGACCAGCGG
AGCTCGGGCGACGGTGGTGGTCAGTACGTGATGAGGCGCGACGATGATGATGGGGAGATGGAGAGGGTGCTGGAGAAGCA
GGCCGAGCTGATCGGGCAGTATGAGGCCGAGGAGAAGGCTCAGACGGACTGGGAGAAGAAATTCAACGACACCCGGAGTT
CACCCAACAAGGTACTACTACCACCGACGTATGAGCTGCATTT------------------TTGGCAACAAAATCACTAG
TTCTGTCAAAATACGTCAGAG---TTAGCATCATGAATGATGTGTCCTTG-----------------------ATGTGAG
ATTTGACATGATGAACATTGCCGGAGGTGATAGTTCTTGCACCGATTTGACCCATAC-TTTTGCTTTCCAAACTGCAGGG
TGACGCTGAGGCAGATTGCAAGGTACCGGCGAGATCAGGTGGTGATAAAAAACTCCTCGTTTCCAGACCACCCAAGAACG
CATCAGAGGAAATGGGGCGGACCGCTGCCGTTTCAGCACAAGGAAGCTCCAGCTACAGCACGGCCACAAGAAGAAGCCAA
GACCAGCAAGGAGACGCAAACTCAGACGGCTGCTCGAGCCGATACGCCAACTCCG---CGTCTTCCGGGATCTGCGCCGT
CAAGGCGCCATCGGAGT------CGAGCCCGTCGGTCAGCAAGGTGTCGGACTGGAGCTCGTCACGCTTCCACGACCACG
CGGACGACACACGGTCATGTCGACAGTCGAGCGGCGACATCGACGTGGAGAGCGTCCTCCAGGCCCTGCAGCGCGCCAGG
ATCTCCCTGAGGCAGAAGCTGGACCGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGCGATGAGTA
CCGTGCGGACCTCT------ACGACGACGACGGCAACAGTTCGTACAGGGAAGAACACAGTGGCTCAAGTCCGTCCCGGC
AGGAAATACTGGCGCTGGGAGCACCGGAGGACTACCATGGCTACCATGACTATGGAAGAGAGGAAAGCCTTTGGGTCGAT
GGCGCCAATGCTTCGCTCATGGAGAAGCCGAGCGGTTCAAGCCCTCCTCGGCAGGAGATCCTGGCTCTCCCGGCCCCGGG
CGACGATCGCGTCCCCGACGACATTCAGGGCGACGTGAAGATCCCTGTCAGCAGCCCGGGCCTGTTCCGGCTGCCGACAG
ATTCATTCCCAAAGGACAAGGGGCTGTCAAGA---AGCAATGGCCATGATTTTGAGCTCG--------------------
----GACATGACACATACAAAGATGATGAA---GCTGGGGTTT------CAGCGAGGCAGTTGTATGACCCGCACGGTTC
CGCGGCTACTTCTGGTAGGTGCGGCGTTCCAGCAAGCTCAGGCTTCACGGTAGGGGGCGCTTCGGTCCTCTCTGGGATCC
CAGGACTCCCGGAAGACCTGAGAAAGGGTGGCGGCCCTCTCCGGGATGCGGACCTGTTCATGCAGCCGCGGCTGCGAGTG
CAT--CATTTCTAACAAGTTGATGCTGTAGCGTGTGTTTGCCGTTGA----TTGTTTGTCTATAGCGTGTGCTGGTCGGC
TTTTTCCTGTGGTCCGATGACAGACAGTGGCGTGTATGCTATGCTCTGCGGCGTTGT-------CAAGCACAGCCAGCTT
GTTCACCGGCTGCACCGGCAGTGGAGAT-AAGATGCCTTTGTTTGCTTGATATC--------------------------
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>chr3D_1_TraesCS3D01G363700
AAGAACA-ATCGTCCTGTAATGTAAGCACTTGGCAGATATC--------------TGTTGTGTCTGT---------ACAA
TCGGTCATCCAGTTTTCCTAACAGAAACACACATTTGCTCCCCGTACGCCATTGCTTTATCATCATCATCCTACGAAGGC
CTGAAGTTGTGCACAGATCTAGTATGAGCATGAG--AGAAGTGCGGGTGTGCATTA--AATGGCTTGATAGAAACGTGTG
TGCTCGATATTATA--T--TACTCGGTGCACTGCAAATT-CGTCACGGCCTCCTTGTTTGGTGCAGTACGTGGAGCTGAC
CTTGATTTTCTTCTTCTTGTTGGAAGCGGTGAGCTTGGATTTAAATGAGGTCATAGCAAGTCGTTGGAGGCTTTCCGTGC
GGTCGTAGTAT--------GAGGCTGGTTGGTGAGGCGCTGGATCCAATCCAGGCACGAAAAGATTCCAAGCGGGGCATG
ACACTCATGCGTGATCCCTCCCAGCGACAGTTTGGATTTTGCAGCCTAAGCCAGCA----------CAGTTCGGCTGTAC
CGCGCTCGACAGAA----AATTTACCCCCACAAA-------------CATCATAAACAACGGACCCCGATGCAAG-----
---GAGGGAGGACCTCCGTCCAGCCAGAAGATCGTTTGCCCACA-----GCACGGCACAGGACCCCGGGGCGACAGGTGA
GGCATCGCCATTCGCCACTGTGAATTGACGGAACAGCCAGCGATACCGTTGCGCTGAGGCTCGCCGTCAGCTCTCATGGT
CCTCGTGCAACGACCGCTACG-GCTGTCGGT----GCGCGCGTGGGGGCGACCGCGGACTGCGTCCTCGCGTGCGCCTCC
TCGCAGAAAGACATGCCACTTTTTTAA---------TACGTACGGGCACGGGCACGAGCAC------GAGAGAACCAAGC
CGTGGCGTGACGGTGGCCGGTGGGTGCGGCGTTGGTGTAGACCGTCACCGTAGAGCAGGAGCGGGGAGCGTGGGGTTGTT
GTCAATTGTATTGTATCGTA-------GCCCCGCACCCCGGGAGTGAGTTCGGAAGTCCACTTCAGTAGCACGTCGTACG
TGCAGCTCGGGTAGCTCGTGTCCAGTGCGGCCGACGACCACCGGCCCGGGCTGCCGTTCTGGAGCGGACGGGGGACAC-T
GGTGTGTGCATGCCGA----GGTTGTGAGCGTGCGCGGATGGCGGACCATGCGGCGGCGG---CGGCGCCCATGACCATC
GACTTCCTCCGCGCGCGCCTGCTCTCCGAGCGCTCCGTCTCACGGGCCTCCAAGGAGCGCGCCGACCAGCTCGCCGCCAG
GGTACGTATGCTGCGCGCGCATTCTTGTGGATGCCAATGTCGGC--------GCCGTTGATTCGCGCGTCTCGTTCAGGT
CGCGGAGCTGGAGGAGCAGGTCCGGGCGGTGACGGCGCAGCGGCGGCAAGCGGAGCGGGAGGCCGCGGAGGTGCTGGCCG
TCCTGGAGTCCCGGGGCTTCTGCGGCAGCCTCTCGGACGTACTCGACTCGGGCTCCGACGACGACGCGGACGAGGAGGAG
CTGGACGAGCCACGCGACGCCACGGTCACCACCGGCGACCCTGCGCCCCGCTCCCACGGCGAGGAGGGAC------AGGA
GCAGGAGCAGCCGCCGGCGAAGGGCGGAACGAAGGAGGAGGACGAGGACGCGACTTCCGGGACGGCCCTGCAGCCGGGCG
GGCTGTCGTGGAAAGGCCGGTGCGCGAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTAC
TTCCTGGCCTCGCAGTCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAG
GTCTCGCCATTAACTGTCGTCCTCATT-------------------------------TCTGCAATGCCATTCTTGTCAG
--AT--TTTGACACGCTGCAGTTCTGT-----------ATGGCAGTAGCATTGCAGCACTGACA---GAGAGTCGGAAGG
AACAGCGAGATGGACCACGCTGCACCGATGATGATGGCCGGACCAAGTTTGACGGCGAGGTGGGCGGAGACGACCAGCGG
AGCTCGGGCGACGGTGGTGGTCAGTACGTGATGAGGCGCGACGATGATGATGGGGAGATGGAGAGGGTGCTGGAGAAGCA
GGCCGAGCTGATCGGGCAGTATGAGGCCGAGGAGAAGGCTCAGACGGACTGGGAGAAGAAATTCAACGACACCCGGAGTT
CACCCAACAAGGTACTACTACCACCGACGTATGAGCTGCATTT------------------TTGGCAACAAAATCACTAG
TTCTGTCAAAATACGTCAGAG---TTAGCATCATGAATGATGTGTCCTTG-----------------------ATGTGAG
ATTTGACATGATGAACATTGCCGGAGGTGATAGTTCTTGCACCGATTTGACCCATAC-TTTTGCTTTCCAAACTGCAGGG
TGACGCTGAGGCAGATTGCAAGGTACCGGCGAGATCAGGTGGTGATAAAAAACTCCTCGTTTCCAGACCACCCAAGAACG
CATCAGAGGAAATGGGGCGGACCGCTGCCGTTTCAGCACAAGGAAGCTCCAGCTACAGCACGGCCACAAGAAGAAGCCAA
GACCAGCAAGGAGACGCAAACTCAGACGGCTGCTCGAGCCGATACGCCAACTCCG---CGTCTTCCGGGATCTGCGCCGT
CAAGGCGCCATCGGAGT------CGAGCCCGTCGGTCAGCAAGGTGTCGGACTGGAGCTCGTCACGCTTCCACGACCACG
CGGACGACACACGGTCATGTCGACAGTCGAGCGGCGACATCGACGTGGAGAGCGTCCTCCAGGCCCTGCAGCGCGCCAGG
ATCTCCCTGAGGCAGAAGCTGGACCGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGCGATGAGTA
CCGTGCGGACCTCT------ACGACGACGACGGCAACAGTTCGTACAGGGAAGAACACAGTGGCTCAAGTCCGTCCCGGC
AGGAAATACTGGCGCTGGGAGCACCGGAGGACTACCATGGCTACCATGACTATGGAAGAGAGGAAAGCCTTTGGGTCGAT
GGCGCCAATGCTTCGCTCATGGAGAAGCCGAGCGGTTCAAGCCCTCCTCGGCAGGAGATCCTGGCTCTCCCGGCCCCGGG
CGACGATCGCGTCCCCGACGACATTCAGGGCGACGTGAAGATCCCTGTCAGCAGCCCGGGCCTGTTCCGGCTGCCGACAG
ATTCATTCCCAAAGGACAAGGGGCTGTCAAGA---AGCAATGGCCATGATTTTGAGCTCG--------------------
----GACATGACACATACAAAGATGATGAA---GCTGGGGTTT------CAGCGAGGCAGTTGTATGACCCGCACGGTTC
CGCGGCTACTTCTGGTAGGTGCGGCGTTCCAGCAAGCTCAGGCTTCACGGTAGGGGGCGCTTCGGTCCTCTCTGGGATCC
CAGGACTCCCGGAAGACCTGAGAAAGGGTGGCGGCCCTCTCCGGGATGCGGACCTGTTCATGCAGCCGCGGCTGCGAGTG
CAT--CATTTCTAACAAGTTGATGCTGTAGCGTGTGTTTGCCGTTGA----TTGTTTGTCTATAGCGTGTGCTGGTCGGC
TTTTTCCTGTGGTCCGATGACAGACAGTGGCGTGTATGCTATGCTCTGCGGCGTTGT-------CAAGCACAGCCAGCTT
GTTCACCGGCTGCACCGGCAGTGGAGAT-AAGATGCCTTTGTTTGCTTGATATCCGTGCTAACCTCGCCCAAG------G
CAAGACAGGAAAAGTTGCGTCGCTTTTCGCCGGTCGCATGCG-TTAGTGCGACCCT----GCAGTCTGCAGGTGACTGAA
ACTGAAACAGCCAGT-TTGAGTGCTGTCGTCTGGCCGGTGTC---TGCGGCTGGCTGCC-GGCGACGCACTCGTCCTGGC
GTGCCTGCTCCATCTCTGGCCC-----------ATCCTCTCTCGGCGTTTGTAA--------------------------
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--------------------------------------------------------AGGCATCCACGACACTCATGATGA
T--GACAGCGAAGTGCGTGAACTTTGCTTCTGGAGCAATCTCGCCGCACCTTTTGCCCCGCGCAACACCGTGGTGTATGC
ATCTCACGTGTGTTGCCTCCAGTTGCAACAGTCATCATGGCGTGTTGCTGCAAGCGCTACGCTCGAGCTGTGCGCTGCAG
CTAGCTGCCCTTCCAGTCTGCCTTCGCTGGAACCTGTGCAGAACTCTCGTAAAACTGCCGCCAGCTTCCCACGATGACTG
TCCAAAGCTCGGCGACGCAGTCCTAAGCAGCCTACCAGACACGAGCCTGCA---ATTAAGGATGCAAAT-----------
---------GGGTATTCTCCAAACCTCTTTAGTTCAACTAAATGAACTAAA--------------------TTTGAAATT
TTAGTTCAGCAGAGGGTGCCATGGGGGTCCCAAATTTCCATCCCTAGCT--GAGATTGGAAAAGGTACTTAAAGAGTTGA
TTCAAATGCCAGTAAGACTATACACCTACACTCCAAATGCCA-----------GTATGCAAAGAGACCTCT--GATTTGA
CCACGTTGGAAGTCAGATATTTGATTCCTGTAAATATAAGCCTAATAGGTCGATCGGAG--CCCAGGCTTACTTCAGACC
ACTTACCGCATCCACATATACATATCA-TACCCCCTAAAGCTACTAATATCGGAAGAGCAAAATCCCTCAATTATAATAC
ACACTAGTCAAG---ATAATAATACTAGGAAAATTCGTCCCACGCGTCAAGCGTCAGGACAAGAGAACTAACCTAAGGAG
CAATTCTTCGGAATATACACTCAGTACCT
>chr3B_1
AAGAACAGATCGTCCTGTAATGTAAGCACTTGACTTGGCAGATACTCCTACCTGATGATGTGTGCGT---------GCAA
CCTCTTATCCAGTTTCCCG-ACAGATACACACATTTGCTGCCCGTATGCATTTGCT---TCATCATCATCCTACTAAGGT
CTGAAGTTGTGCGCAGAT-------------AGAAACGTGTTGCGGGTGCGCGTTA--AATGGCTTGATGGAAACGTGTG
TGCTCGATATTATA--TTTTACTTTGTGCACTGCAATTTTCGTCATGGCCTCTTTGTTTGGTGCAGTACGTGGAGCTGAC
CTCGATTTTCCT-TTGTTGTTGGAAACGGTGAGCTT-GATTTAAATGAGGTCATAGCAAGTCGTTGGCGGTTTTCCATGC
GGTC---GTAT--------GAGGTTGGTCGGTGAGGCGCTGGATCCGATCCAGGCACAAAAAGATTCCAAGCGGGGCATG
ACACTCATGCGTGATCCC----GGCGACATCTTGGATTTTGTAGCCTAAGCCAGCA----------CAGTTGGGCTGTAC
CGCGCTCGACAGAAGAGAAAATTACCCCCACAGCCACAAGGCCACATCATCATAAATAACGGACCCCGATGCAAG-----
---GAGG----ACCTCCGTCCAGCCACAAGATTGTTTGCCCACAGCAGAGCACGGCACAGGACCCCGGGGCGACAGGTGA
GGCATCGCCGTTGGCC----------GATGGAACAGGCAGCGATACCGTTGCGCTAGCTTGGGCTG-GA--TCCCATGGC
CCTCGTGCAACGACCGCTACGCGCTGTCGGT----GCGCGCGTGGGTACGGGCGA---------CCTCGCGTGCGCCTCC
TCGCAGAAAGACAAGCTCCTTTTTTAATATTTGCTCTACGTACGAGCACGAGCGCGAGCAC------GAGAAAACCAAGC
CGTGGCGTGACGGTGGCCGGTGGGTGCGGTGTTGGTGTAGACCGTCACCGTAGAGCGT---CGAGGAGCGTGGAGTTGTT
GTCAATTGTATTGTATTCTAACCCCACGCCCCGCTCCCCGGGAGTGAGGCCGGACGTCCACTTCAGTAGCACGTAGTACG
TGCAGCTCGGGTAGCTCTCGTCCGGTGCGGCAGACGACCACCGGGCCGGGCTGCCGTTCTGGAGCGGAAGGGGGACAC-T
GGTGTGTGCATGCCGACCGAGGTTTTGAGCGTGCGCGGATGGCGGACCCTGCGGCGGCGGCGACGGCACCGATGACCATC
GACTTCCTCCGGGCGCGCCTGCTCTCCGAGCGCTCCGTCTCCCGCGCCTCCAAGGAGCGCGCCGACCAGCTCGCCGCCAG
GGTACGTATGCTGCGCGCGCATTCTTGCGGATGTCAATGTCGGC--------GCCATTGATTCGCGCGTGTCGTTCAGGT
TGCGGAGCTGGAGGAGCAGGTCCGGGCGGTGACGGCGCAGCGGCGGCAAGCCGAGCGGGAGGCCGCGGAGGTGCTGGCCG
TCCTGGAGTCCCGGGGCTTCTGCGGCAGCCTCTCCGACGAGCTCGACGCGGGCTC---CGATGCCGA---CGAGGAGGAG
CGGGATGAGCCAAGCGACGCTACAGCCACCGGCGGCGACCCTGCGCCCCGCTCCCACAACGAGCAGGGAC------AG--
----GAGCAGCCGCCGGAGAAGGGCGAAGCGGAGGAGGGGGA---GGACGCGACGTCCGGGACGGCCCTGCAGCCCGGCG
GGCTGTCGTGGAAAGGCCGGTGCGCGAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTAC
TTCCTCGCCTCGCAGTCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAG
GTCCCGCCATTGACTCTCCTTTTCGTCTCGCTCGTAGATGAGCAATTAAACATTGAGCTCTGCAATGCCATTCTTGTCAA
TTACTATTTGACACTCTGCACTTCTGTTCTGCTCAACGATGGCAGTAGCGTTGCTGCGGTGGTCGCGGAGAGTCGGAAGG
AACAGCGAGACGGACCGCGTTGCGCCGATGATGATGGCCGGACCGAGTTTGACGGCGAGGTGGGCGGAGACGACCGGCGG
AGCTCGGGGGACGGTGGTGGTCAGTACGTGATGAGGCGCGACGATGGTGATGGGGAGATGGAGAGGGTGCTGGAGAAGCA
GGCCGAGCTGATCGAGCAGTATGAGGCCCAGGAGAAGGCTCAGACGGACTGGGAGAAGAAATTCAACGACACGCGGGGCT
CACCGAGCGAGGTACGTA-----------------------TT------------------TTGGCAACGAATTCGTTTG
CTCTGTCAAAACACGGCAGAG---TTAGCGTCATGAATGGTGTGGCCTGTATGTTTTTTTTTCTTCTTTAAGAATTTGAG
ATTTGACATGATGAATATTGCCGGAGGCGACAGTTCTTACACCGATTTGACCCATGGTTTTTGCTTTCCAAACTGCAGGG
TGACGTTGAGGCAGATTGCCAGTTCCAAACCAAATCA---GGTGGTGAAAAGCTCCTCGTTTCCAGGACGCACAAGAACG
CATCAGAAGAAATGGCGCGGACTGCTGCCTTCTCTGCACAAGGAAGCTCCAGCTACAGCACGGCCACAAGACGAAGCCAA
GGG---------GACGCAAATTCAGACGGCTGCTCGAGCCACTACACCAACTCCGCGTCGTCGTCCGGGCTCGGCACCAT
CAAGGCGCCATCGGAGTCGAGCCCGAGCCCGTCGGTCAGCAAGGTCTCGGACTGGAGCTCGTCGCGCTTCCATGATCACG
CCGACGACAATCA------------------CGGCAACATCGACGTGGAGAGCGTTCTCCAAGCCCTGCAGCGCGCCAGG
ATCTCCCTGAGGCAGAAGCTGGACAGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGTGATGAGTA
CCGTGCGGACCTCT------ACGACGACGACGGCAACAGCTCGTACAGGGATGAACACGTCGGGTCGAGCCCGTCTCGGC
AGGAAATACTGGCCCTCCCAGCGCCAGAGGATTACCATGGTTACCATGACCGTGCAAGTGCAAACTGTTGGACCGATGGG
GGCGCCGACACGGCACCCACGGAGAAACCGAGCCCA---------CCTCAGCAGGAGATCCTGGCTCTCCCGGCCCCGGG
CGACGATGC---------------------CGACGTGAAGATCCCTGTCGGCAGTCCGGGCCTGTTCCGGCTGCCGACAG
ACTCGTTCCCGAAGGAGGAGACGCTGCCAGCAATTAGTAACGGGCACGATGCAGAGCTCGGGCTGATTGAGGTTGAGGCT
GCTCGACACGACACATACAGAGATGATGATGGTGCTGGGGTTT------TACCGAAGCAGTTGTATGATCCTC-------
-----CTACTTCTGGTAGGTGCAGCGTCCCACCGGGCTCGGGCT---------------------TCCTCTCTGGGATCC
CAGGACTCCCGGAAGACCTGAGGAAGGGAGGAGGTCTTCTTGGAGACGCAGACCTGTT----------------------
-----CATTTCCAACAAGTGGATGCTGTAACGTGTGTTTGCTGCTGA----T----TGTCTAGAGTGTGTGTTGGCCAGC
TTTTTCCTGTGGTCCGGTT----ACAGTGGCGTGTATGCCATGCTCTGCGGCGTTGT-------CAAGCACAACCAGTTT
GTTTACAGGAATCACCGGCAGTGGAGAT-GAGATGCCTTTGTTTGTTTGGTATCCGTGCAAACCTCGCCCAAGCCCAAGG
CAAGACAGGAAAAGTTGCATGGCTTTTCGCCGGTTGCATGCGATTAGTGCGACCCT----GCAGCCTGCAGGTGACTGAA
ACTCAAACAGCTCCAGTTGAGTGCTGTCGTCTGGCCGGTCTTCTGTGCGGCCTGTTTGGACGGTCTGTGCGG---CTGGC
GTGCCTGCTCCACCTCCGGCCCTTGGTTGGCCCATCCTCTCTCGGCGTTTGTAA--------------------------
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--------------------------------------------------------AGGCACCCACAACACTCATGATGA
CACCACAGCCAAGTGCGTGACCTTTGCTTCTGGAGCAATCTCGCCGCACCTTTTGCCCCGCGCAACACCGTGGTGTATGC
ATCTCACGTGTGTTGCCTCCAGTTGCAGCAGCCATCATGGCGTGTTGCTGCCAGTGCTACGCTCGAGCTGTGCGCTGCAG
CT----GCCCTTCCAGTCTCCCATCGCTGGAAAACTTTTGCAAAACTCT-------------------------------
TCCCAAGCTCGGCGACGCAGCCCTAGGCAGCCTACCAGACAGGAGCCTGCTGAGATTAAGGATGCAAATGGTGGTACCCA
CTGCCTCTAGGGTATTCTCCGAACCTCTTTGGTTCAATCAAATGAACTAAAATTTCCAAAGTCACACAACTTTTGAAATT
TTAGTTCAACAGAGGGTGCCGTGGGGGTCACAAATTTGTATTCCTAGCTGAGAGATTGGAAAAGGGACTTAAAGAGTTGA
TTCAAATGCCAGTAAGACCATACACCTACACTCCGAATTCAACACAGAATATTGTATGCAAAGAGACCTCTCTGATTTGA
CCAAGTTGGAAGTCAGATATTTGATTCCTGTAAATATAAGCCTAACAGGTCGGTCGGAGTCCCCAGGCTTAGTTCAGACC
ACTTGCCGCATCCACATATACATATCA-TACCCCCTAAAGCTACTAATATAGGAAGAGCAAAATCCCTCATTTATAATAC
ACACTAGTCAAGATAATAATAATACTAGGAAAATTCGTCCCACGCGTCAAGCGTCAGGACAAGAGAACTAACCTACG--G
CAATTCTTCGGAATATACACTCGGTACCT
>chr3A_1
AAGAACAATTCGTCCTGTAATGTAAGCACTTGGCAGATATC--------------TGTTGCGGCTGTAGTCTGTACACAA
TCGGTCATCCAGTTTTTAT-----------------------------CCATTGCTTCATCATTATCATCCTAGGAAGGC
CTGAAGTTGCGCACAGATCTAGTACTGTATGAGAGAAGAAGTGCGGGTGTGCATTTATAATGGCTTAATAGAAACGTGCG
TGCTTGATATTATTATT--TACTCGGTGCACTGCAATTT-CGCCATGGCCTCTTTGTTTGGTGTGGTACGCGGAGCTGAC
CTTGATTTTCTTCTTGTTGTTGGAGACGGTGAGCTT-GATTTAAATGAGGTCATAGCAAGTCGTTGGAGGTTTTCCGTGC
GGCC---GTATATATGAGGGAGGCTGGTTGGTGAGGCGCTGGATCCAATCCAGGCACAAAAAGATTCCAGGCGGGGCATG
ACAATCGTGCGTGATCCC----AGCGACATTTTGGATTTTGCAGCCCAGCCAGTTGGACAGCACAGCAGTTCCGCTGTAC
CGCGCACGACATG--------------------------------------ATAAACTACGGACCCCAATGCAAGGAGGG
AGGGAGG----ACCTCCGTCCAGCCAGAAAATCGTTTGTCCACAGCACGGCA--------------GGGGCGACAGGTGA
GGCATCGCCATTCGCCACTGTGAATTGACGGAACAGCCAGCGATACCGTTGCGCTAGCTTGGGGCTCGA--TCCCATGGC
CCTCGTGGAACGACCGCTACGCGCTGTCGGTGCGCGCGCGCGTGGGGGCGAC----------------------------
------------ATGCCACTTTTTTAA---------TACGTACGAGCACGAGCACGAGCACCGGCACGAGAGGACCAAAC
CGTGGCGTGACGGTGGCCGGTGGGTGCCGTGTTGGTGTAG------ACCGTACAGCGT---CGAGGAGCGTGGAGTTGTT
GTCAATTGTATTGTATTCTTGCCCCACGCCCCGCTCCCCGGGAGTGAGTTCGGAAGTCCACTTCAGTAGCACGTCGTACG
TGCGGCTCGGGTAGCTCTCGTCCAGTGCGGCAGGCGACCACCGGGCCGGCGACAGCGGGCTGTGCTGGTGCTGCAGCTTT
GGCGTGTGCATGCTGA----GGCTTTGAGCGTGCG--GATGGCGGACCCTGCGGCGGCGG---CGGCGCCCATGACCATC
GACTTCCTCCGGGCGCGCCTGCTCTCCGAGCGCTCCGTCTCCCGCGCATCCAAGGAGCGCGCCGACCAGCTCGCCGCCAG
GGTACGCATGCTGCGCGCGCATTCTTGTCAATATCAGTGTCGCTGTGGCAGTGCCATTGATTCGTGCGTTTCGTTCAGGT
CGCGGAGCTGGAGGAGCAGGTGCGGGCGGTGACGGCGCAGCGGCGGCAAGCGGAGCGGGAGGCCGCGGAGGTGCTGGCAG
TCCTGGAGTCCCGGGGCTTCTGCGGCAGCCTCTCGGACGTGCTCGACTCGGGCTCCGACGACGCCGA---GGAGGAGGAG
CGGGACGAGCCATGCGACGCCACGGTCACCGGCGGCGATCCTGCGCCCCGCTCCCACGGCGAGGAGGGACCGGAGCAGGA
GCAGGAGCAGCCGCCAGCGAAGGGCGAAAGGAAGGAGGAGGA---GGACGCGACTTCCGGGACGGCGCTGCAGCCCGGCG
GGCTGTCGTGGAAAGGGCGGTGCGCCAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTAC
TTCCTGGCCTCGCAGTCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAG
GTCCCGCCATTGACTCTCCTTCTCGTCTCGTTCGTAGATGAGCAATTAAAGATTGAACTCTACAATGCCATTCTTGTCAA
AAAT--TTTGACACCGTGCACTTCTGTTATGCTCAACGATGGCAGTAGCGTTGCTGCCGTGGTCGCGGAGAGTCGGAAGG
AACAGCGAGACGGACCGCGTTGCGCCGATGATGATGGCCGGACCGAGTTTGACGGCGAGGTGGGCGGAGACGACCGGCGG
AGCTCGGGGGACGGTGGTGGTCAGTACGTGATGAGGCGCGACGATGGTGACGGGGAGATGGAGAGGGTGCTGGAGAAGCA
GGCCGAGCTGATCGGGCAGTACGAGGCCGAGGAGAAGGCTCAGACCGACTGGGAGAAGAAATTCAACGACACCCGGAGCT
CACCCAACAAGGTACCACTACTACTGCTACTACCGATCGTGCATGGAAATTGAGAATGAGATTTGCAACAAATTCATTTA
TTCTGTCAAAATATCGCAGAGCTATTAGCATCATGAATGATATGGATGTGGCCTTGATGTTTTTTCGTCGAGCATTGGAG
ATTTGACATGATGAATGTTGCCGTAGGCGACAGTTCTTACACCGATTTGGCCCATACTTTTTGCTTTCCAAACTGCAGGG
TGATGTCGAGGCAGATTGCCATTTACAGACGAAATCA---GGTGGTGAAAAACTCGTCGTTTCCAGACCACCCAAGAATT
CATCAGAAGAAATGGCGCCGACCCCTGCCATATCAGCACAAGGAAGCTCCAGCTATAGCACGGCCACAAGACGAAGCCAA
GACCAGCAAGGAGACGCGAACTCAGACGGCTGCTCGAGCCGATACACGACCTCCGCGTCATCGTCCGGGCTCGGCGCCGT
CAAGGCGCCATCGGAGT------CGAGCCCGTCGGTCAGCAAGGTCTCGGACTGGAGCTCGTCACGCTTCCACGACCACG
CCGACGATCAGCA------------------GGGCAACATCGATGTGGAGAGCGTTCTCCAGGCCCTGCAGCGCGCCAGG
ATCTCCCTGAGGCAGAAGCTGGACAGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGTGATGAGTA
CCGTACCGACCTCTACAACGACGACGACGACGGCAGCAGTTCCTACAGGGATGGACACGTTGGGTCGAGCCCGTCTCGGC
AGGAAATACTGGCCCTCCCAGCGCCGGAGGACTACCATGGTTACCATGACCATGGAAGCGCAAACTGCTCGAC---CGAT
GGCGCCGATACTGCACTCTCGGAGAACCCGAGCCCA---------CCTCAGCAGGAGATCCTGGCTCTCCCGGCCCCGGG
CGACGACGATGGCGACGGAG------AGGACGAGGTGAAGGTCCCCGTCGGCAGTCCGGGCCTGTTCCGGCTGCCGACAG
ACTCATTCCCAAAGGACGAGACGCTGCCAGCAATTAGTAACGGGCACGATGCAGAGCTCAGGTCGATTGAGGTTGTGGCT
GCTCGACACGACACATACAGAGATGATGATGGTGCTGGGGTTTCAGCTTCAGCGAAGCAGTTGTATGATCCTC-------
-----CTACTTCTGGTAGGTGCAATGTTCCACCGGGCTCAGGCT---------------------TCGTCTCCGGGATCC
CAGGACTGCCGGAAGACCTGAGGAAGGGAGGAGGTCCTCTTGGAGACGCGGACCCGTTCATGCAGCCGCGGCTGCATGAT
TACACCATTTCTAACAAGTTGATGCTGTAGCGTGTGTTTGCCGTTGATTGTT----TGTCTATAGCGTGTGTTGGTCGGC
TTTTTCTTGTGGTCCGATGACAGACAGTGGCGTGCATGCTATGCTCTGCAGCAGCGTTGTCAAGCAAGCACAGCCAGTTT
GTTCACCGGAATCACCGGCAGTGGATGTAAAGATGCCATTGCTTGCTTGACATCCGTGCTAACCTCGCCC------AAGG
CAAGACAGGAAAAGTTGCGTCGCTTTTGGCCGGTTGCATGCG-TTAGTGAGACCCTGCAGGCAGCCTGCAGGTGACTGAA
ACTCAAACAGTTCCGGTTGAGTGCTGTCGTCTGGCCGGTCTTCTGTGCGGCTGGCAGCCGGGCGATGCACTCGTCCTGGC
GTGCCCGCTCCATCTCCGGCCCTT-----GCCCATCCTCTCTCGGCGTTTGTAAGGCCAACTCCACCGCGCGATCCCAAA
CGGACGTTCGTTTTGTCCAGATTCTGTCTGTTTGGGTAGCAATTTGGGGTCGTGTCTGGTCGTGTCCTGTGATGTGGTGG
CCGTGCGTCCACCGTGCGGACGCATTCTTTTGCCCTATCCTGTCCGTCAGGGCCAAAAATGCCCAAATTTTCATCAAAAC
TAGTTTACAACTCAAATATTTGTCTAAAAATTAAAATAGTTTTACAACCCAATTGAAATTGTATTTAATAAAATATTTTT
ACAACCAAATCAAAATTGTCATGACTAAACATAAAATGGACCAATACATCTATTGGTTGCCAATGTGATCCCACACGTGC
TCAACCAAGTCACTTTAAAGATTCAAATGAGAGTGCCAATCACGCATCTCACGATGGAATTGAGCAAACTGTTCAAATGT
GGCCGGGTCTTGGTGCAGGGGCTCAATATTTTCACCTTGATAGTCAAATCCTTGGTCGAAGATACTCTCATCACGCTCGT
CCTCGACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCTTTCATCCCATGACAGTGCAGGG
TTTCGAACGATACCCCACCGGGATTGAAGCACACCAAAAGCACGTTCCACATCCTTTCTAACACTCTCTTGCATTTGGGC
AAATCTCTTTCTCTTCTCACCTTGGGGTTTCGAGATTGTCTTCACAAAAGTTGATCACTAAGGATATATACCATCTGCTA
GATAGTATCCCTTGTTGTAATGGTGGCCGTTGATCTCAAAGTTGACAGGTGGGGAGTGGCCTTCTGCAAGCCTCGCGAAG
ACTGGAGAACGCTGCAGCACGTTGATATCATTGTGAGAACATGCCATGCCGAAGAAAGAATGCCATATCCAAAGATCATG
TGATGCCACCGCTTCTAATATGACAGTGCACGCCTTGACATGCCCTTTGTACTGGCCCTGCCAAGCAAATGGACAGTTCT
TCCACTCCCAGTGCATACAATCTATGCTGCCAAGCATGCCTGGAAAGCCTCTAGCTGCGTTGGTCGCCAACAATCTCTCT
GTATCAGCGACAGTTGGCTACCTCAAGTACTCTGGGCCAAACACCTCGATCACAGCCTGGCAAAACTTGTACATTGACAT
CAGACATGTTGTCTCACTCATACGCACATACTCATCCACCAGATCGCCTGGAATTCCATGTGCAAGCATGCGGATGGCCG
CGGTGCATTTCTGGTAAGAGGAGAATCCAAGCTTGCCAAGGGCATCCGTCTTGCACTCGAAGTATGGGTCATGAGCAACC
ACTCCCTCTCGGATACGATTGAACACATGCCTTGCCATTCGAAAACGGCGACGGAATTTATCCGGCTTGAAGAGCGGGGT
GTTGGCAAAGTAATCGGCATAGAGCAGGGCGTGCCCTCTCTCCCTGTTGCGGTTCAGGTTGGGAGCACGGCCAGGGAGTG
ACCCCCTGTACCGAGGAAGCTGCCGTTGAATGTGGTCGTGAACGACCAGTGCAGCCACCACAATATCTTCATCATCCGAC
GACGAATCGTCCGATGAACAAAGAAAGTGATGGAAGAAAAACTCGTCTCCACTGTCCATACCTTTGTGGGCAAAATGCCG
AACACCTTGCGGGCGTGGTGGCGAAGAGGCCGCGATGATCACCTCGACGCGGCAGGGGTGGTTGCCGGCCGGCTACTGGC
AGCTATGGAGCTCTCGTCGGGAGCTGCTGAGGACGCCGTGCTGCGTCGCCGGCGGTCCTGTCCCCTCTGCGGCCAGCAAA
GACGTCGAAGGCCAAACCTCCGATCGACGGCCAAAACTACGGTCACAGCACGGGCGGGAGGCTGCGCGGTGAGGAGGCGG
CCGGAGAATAGCGGCGGCGGGGCGGGGCGAGAGAGAGGGTGGAAGCGTTGGGAGCGGAGGGACTGCTCGTGTCCCCGACA
GGCGGGCCAGGGGGGACAAGGGCGTGCGTCCAAGCCGTCCGCGCGCGTCCGTTTCACCCCAAACCGAGCGCAAGTTTGGG
CCGAGGATGGGTTGAAAACAGACGGAATCCGGACATTTGTCCGTTTGAGGCCGTGCGCTGGGCTGCACTATTCGTCTGTT
TTACCCCAAACGGACGGGGGCGGACAGGATAGGGTCACGCGGTGGAGTTGGCCTAAAGGCATCCACAACACTCATGATGA
CAGGACAGCCAAGTGCGTGACCTTTGCTTCTGGAGCAATCTCGCCGCACCTTTTGCCCCGCGCAACGCCGTGGTGGATGC
ATCTCACGTGTGTTGCCTCCAGTTGCAACAGCCATCATGGCGTGTCGCTGCAAGTGCTACGCTCGAGCTGTGCGCTGCAG
CT----GCCCCTCCAGTCTGCCTTCGCTGGAA------------------------------------------------
--------------------------------------------------------------------------------
----CTTTAGGGTGTTCTCTGAACCTCTTTAGTTCAAATAAATGAACTGAATTTTCCAAAGTCGCATAACTTTTGAAATT
TTAGTTCAACAGAGGGTGCCGTGGGGGTCACAACTTTGCATCCCTAGCTGAGAGATTGGAAAAGAGACTTAAAGAGTTGA
TTCAAATGCCAGTAAGACCATACACCTACACTCCAAATTCAGCACAGAATATTGTATGCAAAGAGACCTCC--GATTTGA
CCAAGTTGGAAGTCAGATATTTGATTCCTGTATCCAT-----------------------------GCTTAGTTCAGACC
ACTTACCGCATCCACATATACATATGATTACCCCCTAAAGCTACTAATATAGAAAGAGCAAAATCCCTCAATTATAATAC
ACACTAGTCAAG---ATAATAATACTAGGAAAATTCGTCCCATGCGTCAAGCGTCAGGACAGGAGAACTAACCTAAGGAG
CAATTAATCGGAATATACACTCAGTACCT
>SNPs
--------------------------------------------------------------------------------
-------------------S-----S-------------S------S----------S----------------------
------------------------SSSSSSSSSS----------------------------------------------
------------------------------------S--------S------S---------------------------
---------------S---------S----------S---------------------------------S---------
----SSS--------------------------------------------------S----------------------
------------------SSSS-------S--------------------------------------------------
--------------------S-----------SS----------------------------------------------
-------SSSS---------------------------------------------------------------------
-------------------------------------------------------SSSSSSS----SS-SS--S-----S
------------------------------------------------------SSSSSSSSSS----------------
--------------------------------------------S-----S-----------------------------
-----------------------------S--------------------------SSSSS--S---------S------
----------------SS----------------S---------------------------------------------
-----------------SS------------S------------S-----------------------S-----------
------------------------S-----------------------S-------------------------------
-----------S-----------------------------S--S-----------------------------------
---------------------------------S---------------------S-------------S----------
--------------------------------------------------------------------------------
----------------------------------------S----------------------S--SSSS----------
-S----------S-----------------SS------------------------------------------------
--------------------------S---------------SSS------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-------S---S--S-S---S-S----------------------------------------------------S
--------------S-----S----------------------------S----S--SS--SSS----------------
----------S-----S--S---S--------------------S------------------------------S----
--------S-------------------------------------S---------------------------------
------------------------------------------------------------------------------S-
---------------S-----S--S-SSSSSSSS-S-SSSS-------------------------------S---S-S-
---------------S----------------------------S------------------------------S----
---------------S-----------S--S-------S-----------------------------------------
-----S-------------S--S---S-S---S----SSS----S-S---------------------------------
-------S-------S-------------S-S---------------------------------------S--------
---------------------------------------------S----------------S------S--S-------
---------------------------------------------S----------------------------------
-S-------SS-SSSSSSSSSSSSSSSSSSS----S-------------------S------------------------
------------------------S----------------------------------------------S--------
---------------------------------------------------S------SS---S--S--S-----S----
-------------S--SSS---S-----------------S---------S-------S-SSS-SS--SSSSSS-S----
------S--S--S-S----S------S------SSSSSSSSSSSS----S------------------------------
-------SSS-S-SS--SS-SSSSSS---S-------------------S----S-------------------------
-S---------------S--SS----S--SS------S--S--S--S---SSS---------------------------
--------S----------S---------S-------------------------S------------S--S-SSSSSSS
SSSSS-----------------S--------S-SS---------SSSSSSSSSSSSSSSSSSSSS---------------
----------------------S-----S--S--S-----SS-S--S----------------------------SS-SS
S-S-------------------------------------------------SSSS---------------S--------
-----------------------------------------------------------------------------S--
---------SSS--------------------------------------------------------------------
----------------------------------S-----------------------------S---------------
---S-------SSSS------------------------S-S-----------------------S--------------
----------------S---------------------------------------------------------------
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------------------------------------------------------------------S-------------
S--------S----------S-----------------------------------------------------------
-------------------------------S----------------------S-------------------------
--SSSS--------------------------SSSS-SSSS--SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---S----------------S----S---------------S--------S-----------------------------
--------------------S----------------S------------------------------------------
--------S-----------S--------S-------S---------------------------S--------------
------------------S-------------------S-S---------------------------------------
---S-----------------------------------------S------S------------------S--------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_1017
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-------------------------------------TAGACCGTCACCGTAGAGCA-----------------------
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>reverse_2055
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------------------------------------------------------AGCACTGACAGAGAGTCGGA------
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>forward_1932
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------------------------------------------------------------------------GAGCTCAG
GTCTCGCCATTA--------------------------------------------------------------------
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>reverse_3179
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----------------------------------------------------------AGAGGAAAGCCTTTGGGTCG--
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>forward_3107
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-----------------------------------------------GGGAAGAACACAGTGGCTCA-------------
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>reverse_6542
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-------------------------------------------------------------CAGCTTCCCACGATGACTG
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
