Multiple sequence alignment - TraesCS3D01G358600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G358600 chr3D 100.000 4160 0 0 1 4160 472195030 472199189 0.000000e+00 7683.0
1 TraesCS3D01G358600 chr3D 83.333 180 22 5 2761 2933 472116719 472116897 4.300000e-35 159.0
2 TraesCS3D01G358600 chr3D 82.692 156 25 2 1493 1647 454746215 454746369 2.020000e-28 137.0
3 TraesCS3D01G358600 chr3D 78.125 192 29 7 2753 2933 465026362 465026173 4.400000e-20 110.0
4 TraesCS3D01G358600 chr3A 92.813 2449 120 29 1120 3541 614690307 614692726 0.000000e+00 3496.0
5 TraesCS3D01G358600 chr3A 86.972 568 40 12 552 1097 614689665 614690220 3.560000e-170 608.0
6 TraesCS3D01G358600 chr3A 86.145 498 26 18 3702 4160 197199203 197198710 8.030000e-137 497.0
7 TraesCS3D01G358600 chr3A 82.778 180 23 5 2761 2933 614679901 614680079 2.000000e-33 154.0
8 TraesCS3D01G358600 chr3A 82.692 156 25 2 1493 1647 596794489 596794643 2.020000e-28 137.0
9 TraesCS3D01G358600 chr3A 78.125 192 29 7 2753 2933 608346575 608346386 4.400000e-20 110.0
10 TraesCS3D01G358600 chr3B 91.385 1625 102 23 1770 3371 627741093 627742702 0.000000e+00 2191.0
11 TraesCS3D01G358600 chr3B 88.206 814 49 15 314 1097 627739535 627740331 0.000000e+00 928.0
12 TraesCS3D01G358600 chr3B 91.615 322 18 8 1453 1772 627740728 627741042 1.780000e-118 436.0
13 TraesCS3D01G358600 chr3B 90.226 266 12 9 1122 1373 627740427 627740692 6.660000e-88 335.0
14 TraesCS3D01G358600 chr3B 85.971 278 22 3 3380 3640 627743306 627743583 8.810000e-72 281.0
15 TraesCS3D01G358600 chr3B 82.692 156 25 2 1493 1647 597545624 597545778 2.020000e-28 137.0
16 TraesCS3D01G358600 chr3B 77.720 193 28 9 2753 2933 618441385 618441196 2.050000e-18 104.0
17 TraesCS3D01G358600 chr7D 91.429 525 25 13 3651 4160 17230275 17229756 0.000000e+00 702.0
18 TraesCS3D01G358600 chr5D 91.013 523 28 9 3652 4160 444741298 444740781 0.000000e+00 688.0
19 TraesCS3D01G358600 chr5D 76.241 282 56 9 51 326 284969459 284969183 5.610000e-29 139.0
20 TraesCS3D01G358600 chr5D 94.286 35 2 0 1379 1413 458195512 458195546 2.000000e-03 54.7
21 TraesCS3D01G358600 chr2A 86.278 532 41 18 3652 4160 749340624 749341146 2.190000e-152 549.0
22 TraesCS3D01G358600 chr2A 93.651 63 3 1 3652 3713 31381543 31381605 4.430000e-15 93.5
23 TraesCS3D01G358600 chr1A 87.276 503 34 13 3654 4152 75253286 75253762 7.860000e-152 547.0
24 TraesCS3D01G358600 chr1A 86.755 151 8 4 3652 3790 120021879 120021729 1.550000e-34 158.0
25 TraesCS3D01G358600 chr1A 76.224 143 25 4 184 326 334454650 334454517 2.680000e-07 67.6
26 TraesCS3D01G358600 chr4A 80.926 540 57 26 3657 4160 737432330 737432859 6.520000e-103 385.0
27 TraesCS3D01G358600 chr5B 75.240 416 78 19 3748 4146 141459134 141458727 1.540000e-39 174.0
28 TraesCS3D01G358600 chr5B 96.875 32 1 0 296 327 659713758 659713789 2.000000e-03 54.7
29 TraesCS3D01G358600 chr6B 91.954 87 6 1 3651 3736 131806498 131806412 2.030000e-23 121.0
30 TraesCS3D01G358600 chr6B 77.273 176 36 4 1463 1636 687185131 687184958 2.650000e-17 100.0
31 TraesCS3D01G358600 chr6B 77.465 142 22 4 186 327 159050652 159050783 4.460000e-10 76.8
32 TraesCS3D01G358600 chr4D 91.954 87 6 1 3652 3737 264491654 264491568 2.030000e-23 121.0
33 TraesCS3D01G358600 chr5A 84.615 117 16 2 51 166 11535035 11534920 9.450000e-22 115.0
34 TraesCS3D01G358600 chr6A 78.616 159 28 6 1481 1636 598166425 598166270 2.650000e-17 100.0
35 TraesCS3D01G358600 chr6D 78.169 142 22 3 186 327 83252462 83252594 9.590000e-12 82.4
36 TraesCS3D01G358600 chr1D 92.500 40 3 0 1374 1413 262705190 262705229 1.620000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G358600 chr3D 472195030 472199189 4159 False 7683.0 7683 100.0000 1 4160 1 chr3D.!!$F3 4159
1 TraesCS3D01G358600 chr3A 614689665 614692726 3061 False 2052.0 3496 89.8925 552 3541 2 chr3A.!!$F3 2989
2 TraesCS3D01G358600 chr3B 627739535 627743583 4048 False 834.2 2191 89.4806 314 3640 5 chr3B.!!$F2 3326
3 TraesCS3D01G358600 chr7D 17229756 17230275 519 True 702.0 702 91.4290 3651 4160 1 chr7D.!!$R1 509
4 TraesCS3D01G358600 chr5D 444740781 444741298 517 True 688.0 688 91.0130 3652 4160 1 chr5D.!!$R2 508
5 TraesCS3D01G358600 chr2A 749340624 749341146 522 False 549.0 549 86.2780 3652 4160 1 chr2A.!!$F2 508
6 TraesCS3D01G358600 chr4A 737432330 737432859 529 False 385.0 385 80.9260 3657 4160 1 chr4A.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.036010 AGGCCCGTTTGAGATGTCTG 60.036 55.0 0.0 0.0 0.0 3.51 F
240 241 0.250338 GTCTGTCTGGGTCGGCTTTT 60.250 55.0 0.0 0.0 0.0 2.27 F
1674 1801 0.463116 GGAATGGCACGGACGGTTAT 60.463 55.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1809 0.178068 AATCTCGCCGTATGGTGCTT 59.822 50.0 9.84 0.89 45.79 3.91 R
1775 1959 0.951558 TCGCCTGCCAAAGAAAGAAC 59.048 50.0 0.00 0.00 0.00 3.01 R
3160 3362 0.726827 AACAATACATCGGTGCTGCG 59.273 50.0 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.959275 GCTAGGGTTGTCGATGTCG 58.041 57.895 0.00 0.00 41.45 4.35
19 20 0.527817 GCTAGGGTTGTCGATGTCGG 60.528 60.000 2.25 0.00 40.29 4.79
20 21 0.527817 CTAGGGTTGTCGATGTCGGC 60.528 60.000 0.00 0.00 45.40 5.54
21 22 1.952102 TAGGGTTGTCGATGTCGGCC 61.952 60.000 4.43 0.00 44.42 6.13
22 23 3.186047 GGTTGTCGATGTCGGCCG 61.186 66.667 22.12 22.12 44.42 6.13
23 24 3.186047 GTTGTCGATGTCGGCCGG 61.186 66.667 27.83 8.93 44.42 6.13
26 27 4.814294 GTCGATGTCGGCCGGCTT 62.814 66.667 32.34 25.91 38.15 4.35
27 28 3.142162 TCGATGTCGGCCGGCTTA 61.142 61.111 32.34 12.65 40.29 3.09
28 29 2.202824 CGATGTCGGCCGGCTTAA 60.203 61.111 32.34 11.75 35.37 1.85
29 30 1.812093 CGATGTCGGCCGGCTTAAA 60.812 57.895 32.34 11.30 35.37 1.52
30 31 1.157870 CGATGTCGGCCGGCTTAAAT 61.158 55.000 32.34 16.42 35.37 1.40
31 32 1.870580 CGATGTCGGCCGGCTTAAATA 60.871 52.381 32.34 9.94 35.37 1.40
32 33 1.798813 GATGTCGGCCGGCTTAAATAG 59.201 52.381 32.34 9.21 0.00 1.73
44 45 3.435566 GCTTAAATAGCCGGACTTTTGC 58.564 45.455 5.05 5.80 44.48 3.68
45 46 3.733988 GCTTAAATAGCCGGACTTTTGCC 60.734 47.826 5.05 0.00 44.48 4.52
46 47 2.215942 AAATAGCCGGACTTTTGCCT 57.784 45.000 5.05 0.00 0.00 4.75
47 48 1.751437 AATAGCCGGACTTTTGCCTC 58.249 50.000 5.05 0.00 0.00 4.70
48 49 0.462047 ATAGCCGGACTTTTGCCTCG 60.462 55.000 5.05 0.00 0.00 4.63
49 50 2.515996 TAGCCGGACTTTTGCCTCGG 62.516 60.000 5.05 0.00 43.13 4.63
50 51 2.746277 CCGGACTTTTGCCTCGGG 60.746 66.667 0.00 0.00 37.35 5.14
68 69 3.124921 CGGCGTTCACATCCCCAC 61.125 66.667 0.00 0.00 0.00 4.61
69 70 2.750237 GGCGTTCACATCCCCACC 60.750 66.667 0.00 0.00 0.00 4.61
70 71 3.124921 GCGTTCACATCCCCACCG 61.125 66.667 0.00 0.00 0.00 4.94
71 72 2.660206 CGTTCACATCCCCACCGA 59.340 61.111 0.00 0.00 0.00 4.69
72 73 1.004320 CGTTCACATCCCCACCGAA 60.004 57.895 0.00 0.00 0.00 4.30
73 74 1.019278 CGTTCACATCCCCACCGAAG 61.019 60.000 0.00 0.00 0.00 3.79
97 98 4.988716 TCCGTCGGACTGCTGGGT 62.989 66.667 10.71 0.00 0.00 4.51
98 99 4.003788 CCGTCGGACTGCTGGGTT 62.004 66.667 4.91 0.00 0.00 4.11
99 100 2.030562 CGTCGGACTGCTGGGTTT 59.969 61.111 6.57 0.00 0.00 3.27
100 101 1.597027 CGTCGGACTGCTGGGTTTT 60.597 57.895 6.57 0.00 0.00 2.43
101 102 1.566018 CGTCGGACTGCTGGGTTTTC 61.566 60.000 6.57 0.00 0.00 2.29
102 103 0.534203 GTCGGACTGCTGGGTTTTCA 60.534 55.000 0.00 0.00 0.00 2.69
103 104 0.250295 TCGGACTGCTGGGTTTTCAG 60.250 55.000 0.00 0.00 37.79 3.02
104 105 1.237285 CGGACTGCTGGGTTTTCAGG 61.237 60.000 0.00 0.00 35.43 3.86
105 106 1.527433 GGACTGCTGGGTTTTCAGGC 61.527 60.000 0.00 0.00 35.18 4.85
106 107 0.823356 GACTGCTGGGTTTTCAGGCA 60.823 55.000 0.00 0.00 35.95 4.75
107 108 0.396974 ACTGCTGGGTTTTCAGGCAA 60.397 50.000 0.00 0.00 35.43 4.52
108 109 0.971386 CTGCTGGGTTTTCAGGCAAT 59.029 50.000 0.00 0.00 35.43 3.56
109 110 1.345415 CTGCTGGGTTTTCAGGCAATT 59.655 47.619 0.00 0.00 35.43 2.32
110 111 1.344114 TGCTGGGTTTTCAGGCAATTC 59.656 47.619 0.00 0.00 35.43 2.17
111 112 1.338105 GCTGGGTTTTCAGGCAATTCC 60.338 52.381 0.00 0.00 35.43 3.01
112 113 0.965439 TGGGTTTTCAGGCAATTCCG 59.035 50.000 0.00 0.00 40.77 4.30
113 114 0.966179 GGGTTTTCAGGCAATTCCGT 59.034 50.000 0.00 0.00 40.77 4.69
114 115 1.336795 GGGTTTTCAGGCAATTCCGTG 60.337 52.381 0.00 0.00 40.77 4.94
115 116 1.339929 GGTTTTCAGGCAATTCCGTGT 59.660 47.619 0.00 0.00 40.77 4.49
116 117 2.393764 GTTTTCAGGCAATTCCGTGTG 58.606 47.619 0.00 0.00 40.77 3.82
117 118 0.958091 TTTCAGGCAATTCCGTGTGG 59.042 50.000 0.00 0.00 40.77 4.17
118 119 0.893270 TTCAGGCAATTCCGTGTGGG 60.893 55.000 0.00 0.00 40.77 4.61
119 120 1.303236 CAGGCAATTCCGTGTGGGA 60.303 57.895 0.00 0.00 45.40 4.37
128 129 2.345991 CGTGTGGGACCGGAATGT 59.654 61.111 9.46 0.00 0.00 2.71
129 130 1.740296 CGTGTGGGACCGGAATGTC 60.740 63.158 9.46 0.00 34.42 3.06
130 131 1.373435 GTGTGGGACCGGAATGTCA 59.627 57.895 9.46 0.00 36.97 3.58
131 132 0.673644 GTGTGGGACCGGAATGTCAG 60.674 60.000 9.46 0.00 36.97 3.51
132 133 1.125093 TGTGGGACCGGAATGTCAGT 61.125 55.000 9.46 0.00 36.97 3.41
133 134 0.391263 GTGGGACCGGAATGTCAGTC 60.391 60.000 9.46 0.00 36.97 3.51
134 135 1.221021 GGGACCGGAATGTCAGTCC 59.779 63.158 9.46 9.35 46.65 3.85
171 172 3.069778 GGCCTCCCCATATCCGTC 58.930 66.667 0.00 0.00 0.00 4.79
172 173 2.593956 GGCCTCCCCATATCCGTCC 61.594 68.421 0.00 0.00 0.00 4.79
173 174 1.841556 GCCTCCCCATATCCGTCCA 60.842 63.158 0.00 0.00 0.00 4.02
174 175 1.415672 GCCTCCCCATATCCGTCCAA 61.416 60.000 0.00 0.00 0.00 3.53
175 176 1.362224 CCTCCCCATATCCGTCCAAT 58.638 55.000 0.00 0.00 0.00 3.16
176 177 2.546899 CCTCCCCATATCCGTCCAATA 58.453 52.381 0.00 0.00 0.00 1.90
177 178 3.115390 CCTCCCCATATCCGTCCAATAT 58.885 50.000 0.00 0.00 0.00 1.28
178 179 3.523564 CCTCCCCATATCCGTCCAATATT 59.476 47.826 0.00 0.00 0.00 1.28
179 180 4.018415 CCTCCCCATATCCGTCCAATATTT 60.018 45.833 0.00 0.00 0.00 1.40
180 181 4.917385 TCCCCATATCCGTCCAATATTTG 58.083 43.478 0.00 0.00 0.00 2.32
181 182 4.599676 TCCCCATATCCGTCCAATATTTGA 59.400 41.667 0.00 0.00 0.00 2.69
182 183 5.252863 TCCCCATATCCGTCCAATATTTGAT 59.747 40.000 0.00 0.00 0.00 2.57
183 184 5.357878 CCCCATATCCGTCCAATATTTGATG 59.642 44.000 2.42 2.42 0.00 3.07
184 185 5.945784 CCCATATCCGTCCAATATTTGATGT 59.054 40.000 7.71 0.00 0.00 3.06
185 186 6.127925 CCCATATCCGTCCAATATTTGATGTG 60.128 42.308 7.71 4.28 0.00 3.21
186 187 4.836125 ATCCGTCCAATATTTGATGTGC 57.164 40.909 7.71 0.00 0.00 4.57
187 188 2.948979 TCCGTCCAATATTTGATGTGCC 59.051 45.455 7.71 0.00 0.00 5.01
188 189 2.286950 CCGTCCAATATTTGATGTGCCG 60.287 50.000 7.71 0.38 0.00 5.69
189 190 2.286950 CGTCCAATATTTGATGTGCCGG 60.287 50.000 0.00 0.00 0.00 6.13
190 191 2.687935 GTCCAATATTTGATGTGCCGGT 59.312 45.455 1.90 0.00 0.00 5.28
191 192 2.948979 TCCAATATTTGATGTGCCGGTC 59.051 45.455 1.90 0.00 0.00 4.79
192 193 2.687425 CCAATATTTGATGTGCCGGTCA 59.313 45.455 1.90 3.28 0.00 4.02
193 194 3.243168 CCAATATTTGATGTGCCGGTCAG 60.243 47.826 1.90 0.00 0.00 3.51
194 195 2.779755 TATTTGATGTGCCGGTCAGT 57.220 45.000 1.90 0.00 0.00 3.41
195 196 1.453155 ATTTGATGTGCCGGTCAGTC 58.547 50.000 1.90 4.04 0.00 3.51
196 197 0.605319 TTTGATGTGCCGGTCAGTCC 60.605 55.000 1.90 0.00 0.00 3.85
206 207 4.047059 GTCAGTCCGGGCGTTCGA 62.047 66.667 0.00 0.00 0.00 3.71
207 208 3.744719 TCAGTCCGGGCGTTCGAG 61.745 66.667 0.00 0.00 0.00 4.04
208 209 4.796231 CAGTCCGGGCGTTCGAGG 62.796 72.222 0.00 0.00 0.00 4.63
216 217 4.084888 GCGTTCGAGGCCCGTTTG 62.085 66.667 12.46 5.74 39.75 2.93
217 218 2.356553 CGTTCGAGGCCCGTTTGA 60.357 61.111 12.46 0.00 39.75 2.69
218 219 2.380410 CGTTCGAGGCCCGTTTGAG 61.380 63.158 12.46 0.22 39.75 3.02
219 220 1.005394 GTTCGAGGCCCGTTTGAGA 60.005 57.895 12.46 0.00 39.75 3.27
220 221 0.391263 GTTCGAGGCCCGTTTGAGAT 60.391 55.000 12.46 0.00 39.75 2.75
221 222 0.391130 TTCGAGGCCCGTTTGAGATG 60.391 55.000 12.46 0.00 39.75 2.90
222 223 1.079127 CGAGGCCCGTTTGAGATGT 60.079 57.895 0.00 0.00 0.00 3.06
223 224 1.084370 CGAGGCCCGTTTGAGATGTC 61.084 60.000 0.00 0.00 0.00 3.06
224 225 0.250513 GAGGCCCGTTTGAGATGTCT 59.749 55.000 0.00 0.00 0.00 3.41
225 226 0.036010 AGGCCCGTTTGAGATGTCTG 60.036 55.000 0.00 0.00 0.00 3.51
226 227 0.321653 GGCCCGTTTGAGATGTCTGT 60.322 55.000 0.00 0.00 0.00 3.41
227 228 1.079503 GCCCGTTTGAGATGTCTGTC 58.920 55.000 0.00 0.00 0.00 3.51
228 229 1.338200 GCCCGTTTGAGATGTCTGTCT 60.338 52.381 0.00 0.00 0.00 3.41
229 230 2.341257 CCCGTTTGAGATGTCTGTCTG 58.659 52.381 0.00 0.00 0.00 3.51
230 231 2.341257 CCGTTTGAGATGTCTGTCTGG 58.659 52.381 0.00 0.00 0.00 3.86
231 232 2.341257 CGTTTGAGATGTCTGTCTGGG 58.659 52.381 0.00 0.00 0.00 4.45
232 233 2.289072 CGTTTGAGATGTCTGTCTGGGT 60.289 50.000 0.00 0.00 0.00 4.51
233 234 3.330267 GTTTGAGATGTCTGTCTGGGTC 58.670 50.000 0.00 0.00 0.00 4.46
234 235 1.177401 TGAGATGTCTGTCTGGGTCG 58.823 55.000 0.00 0.00 0.00 4.79
235 236 0.457851 GAGATGTCTGTCTGGGTCGG 59.542 60.000 0.00 0.00 0.00 4.79
236 237 1.153549 GATGTCTGTCTGGGTCGGC 60.154 63.158 0.00 0.00 0.00 5.54
237 238 1.608717 GATGTCTGTCTGGGTCGGCT 61.609 60.000 0.00 0.00 0.00 5.52
238 239 1.194781 ATGTCTGTCTGGGTCGGCTT 61.195 55.000 0.00 0.00 0.00 4.35
239 240 1.371558 GTCTGTCTGGGTCGGCTTT 59.628 57.895 0.00 0.00 0.00 3.51
240 241 0.250338 GTCTGTCTGGGTCGGCTTTT 60.250 55.000 0.00 0.00 0.00 2.27
241 242 0.472471 TCTGTCTGGGTCGGCTTTTT 59.528 50.000 0.00 0.00 0.00 1.94
267 268 4.592426 GTCACTAACCAGGGCGTC 57.408 61.111 0.00 0.00 0.00 5.19
268 269 1.079336 GTCACTAACCAGGGCGTCC 60.079 63.158 0.00 0.00 0.00 4.79
269 270 1.534476 TCACTAACCAGGGCGTCCA 60.534 57.895 9.71 0.00 34.83 4.02
270 271 1.375523 CACTAACCAGGGCGTCCAC 60.376 63.158 9.71 0.00 34.83 4.02
271 272 2.267961 CTAACCAGGGCGTCCACC 59.732 66.667 9.71 0.00 34.83 4.61
282 283 4.540735 GTCCACCCGGGCGTATGG 62.541 72.222 24.08 21.46 36.21 2.74
283 284 4.781616 TCCACCCGGGCGTATGGA 62.782 66.667 23.35 23.35 38.94 3.41
284 285 4.235762 CCACCCGGGCGTATGGAG 62.236 72.222 24.08 0.00 33.80 3.86
285 286 4.235762 CACCCGGGCGTATGGAGG 62.236 72.222 24.08 0.00 0.00 4.30
304 305 3.015753 GGGGGAGGGGGTTGAGAC 61.016 72.222 0.00 0.00 0.00 3.36
305 306 3.400054 GGGGAGGGGGTTGAGACG 61.400 72.222 0.00 0.00 0.00 4.18
306 307 4.097361 GGGAGGGGGTTGAGACGC 62.097 72.222 0.00 0.00 37.95 5.19
312 313 3.692406 GGGTTGAGACGCCCGACT 61.692 66.667 0.00 0.00 34.90 4.18
315 316 1.582968 GTTGAGACGCCCGACTGTA 59.417 57.895 0.00 0.00 0.00 2.74
339 340 1.645034 CTCTAAGGTGTGGCATCACG 58.355 55.000 12.01 0.00 46.42 4.35
449 456 5.042463 TCGGAGGCAATATAAAATGGTCA 57.958 39.130 0.00 0.00 0.00 4.02
467 474 1.726248 TCATGATCAAGTCAACGCACG 59.274 47.619 0.00 0.00 40.97 5.34
476 483 5.882553 TCAAGTCAACGCACGTATAGAATA 58.117 37.500 0.00 0.00 0.00 1.75
546 553 9.148460 GTAATATCTCGCAAAAAGAAAAGATCG 57.852 33.333 0.00 0.00 0.00 3.69
584 591 8.159344 ACAAAATCTTTCTCGATATCAATCCC 57.841 34.615 3.12 0.00 0.00 3.85
585 592 7.775093 ACAAAATCTTTCTCGATATCAATCCCA 59.225 33.333 3.12 0.00 0.00 4.37
587 594 8.930846 AAATCTTTCTCGATATCAATCCCATT 57.069 30.769 3.12 0.00 0.00 3.16
588 595 7.918536 ATCTTTCTCGATATCAATCCCATTG 57.081 36.000 3.12 0.00 41.57 2.82
589 596 6.830912 TCTTTCTCGATATCAATCCCATTGT 58.169 36.000 3.12 0.00 41.02 2.71
595 602 2.645838 ATCAATCCCATTGTCCCTCG 57.354 50.000 0.00 0.00 41.02 4.63
600 607 0.902531 TCCCATTGTCCCTCGTTCTC 59.097 55.000 0.00 0.00 0.00 2.87
611 620 2.507992 CGTTCTCTGAGCCCGCTG 60.508 66.667 0.00 0.00 0.00 5.18
645 664 3.110178 GTGCTACGCGCCGTTTCT 61.110 61.111 5.73 0.00 41.54 2.52
659 678 4.555906 CGCCGTTTCTTGTAAATTTCCTGT 60.556 41.667 0.00 0.00 0.00 4.00
708 727 2.418628 CCGCTATCAACAAAATGACGGT 59.581 45.455 0.00 0.00 33.94 4.83
758 777 1.131693 GGTGCAAGCCACGGTTATTAC 59.868 52.381 0.00 0.00 45.62 1.89
764 783 2.914059 AGCCACGGTTATTACATGTCC 58.086 47.619 0.00 0.00 0.00 4.02
776 795 1.244697 ACATGTCCTCGTCGCAGTCT 61.245 55.000 0.00 0.00 0.00 3.24
886 909 4.666176 CGCAAACGATAAGTACGTACGTAT 59.334 41.667 29.05 27.12 43.16 3.06
891 914 6.106877 ACGATAAGTACGTACGTATGTGTT 57.893 37.500 30.36 21.18 42.17 3.32
905 928 4.391830 CGTATGTGTTGATAACAAGTGGCT 59.608 41.667 0.00 0.00 44.16 4.75
906 929 5.579119 CGTATGTGTTGATAACAAGTGGCTA 59.421 40.000 0.00 0.00 44.16 3.93
939 962 5.138276 ACATATAGAAGGACGACCAAGCTA 58.862 41.667 6.71 4.95 38.94 3.32
940 963 5.241949 ACATATAGAAGGACGACCAAGCTAG 59.758 44.000 6.71 0.00 38.94 3.42
941 964 2.217510 AGAAGGACGACCAAGCTAGA 57.782 50.000 6.71 0.00 38.94 2.43
942 965 1.819903 AGAAGGACGACCAAGCTAGAC 59.180 52.381 6.71 0.00 38.94 2.59
943 966 1.544691 GAAGGACGACCAAGCTAGACA 59.455 52.381 6.71 0.00 38.94 3.41
944 967 1.629043 AGGACGACCAAGCTAGACAA 58.371 50.000 6.71 0.00 38.94 3.18
945 968 1.546476 AGGACGACCAAGCTAGACAAG 59.454 52.381 6.71 0.00 38.94 3.16
946 969 2.002599 GGACGACCAAGCTAGACAAGC 61.003 57.143 0.00 0.00 43.08 4.01
957 980 4.930463 GCTAGACAAGCCTACAGTTTTC 57.070 45.455 0.00 0.00 46.25 2.29
986 1010 3.181489 GCTAATTGATCTTGCTGCTGCTT 60.181 43.478 17.00 2.68 40.48 3.91
987 1011 3.505464 AATTGATCTTGCTGCTGCTTC 57.495 42.857 17.00 8.82 40.48 3.86
1015 1051 2.124612 TGATGGCCATGCTCGTGG 60.125 61.111 26.56 3.79 42.35 4.94
1050 1086 4.733371 TGCGCGACGATGGCAAGA 62.733 61.111 12.10 0.00 33.01 3.02
1053 1089 3.918220 GCGACGATGGCAAGAGCG 61.918 66.667 0.00 0.00 43.41 5.03
1097 1134 4.039124 CACTGTAATTTCCTGCACCCTTTT 59.961 41.667 0.00 0.00 0.00 2.27
1099 1136 5.208463 TGTAATTTCCTGCACCCTTTTTC 57.792 39.130 0.00 0.00 0.00 2.29
1100 1137 4.898861 TGTAATTTCCTGCACCCTTTTTCT 59.101 37.500 0.00 0.00 0.00 2.52
1101 1138 5.365314 TGTAATTTCCTGCACCCTTTTTCTT 59.635 36.000 0.00 0.00 0.00 2.52
1102 1139 3.817709 TTTCCTGCACCCTTTTTCTTG 57.182 42.857 0.00 0.00 0.00 3.02
1103 1140 1.039856 TCCTGCACCCTTTTTCTTGC 58.960 50.000 0.00 0.00 35.45 4.01
1106 1143 2.546584 CCTGCACCCTTTTTCTTGCTTC 60.547 50.000 0.00 0.00 35.91 3.86
1107 1144 2.101249 CTGCACCCTTTTTCTTGCTTCA 59.899 45.455 0.00 0.00 35.91 3.02
1108 1145 2.101249 TGCACCCTTTTTCTTGCTTCAG 59.899 45.455 0.00 0.00 35.91 3.02
1109 1146 2.546584 GCACCCTTTTTCTTGCTTCAGG 60.547 50.000 0.00 0.00 32.00 3.86
1110 1147 1.688735 ACCCTTTTTCTTGCTTCAGGC 59.311 47.619 0.00 0.00 42.22 4.85
1111 1148 1.966354 CCCTTTTTCTTGCTTCAGGCT 59.034 47.619 0.00 0.00 42.39 4.58
1112 1149 3.157087 CCCTTTTTCTTGCTTCAGGCTA 58.843 45.455 0.00 0.00 42.39 3.93
1113 1150 3.192212 CCCTTTTTCTTGCTTCAGGCTAG 59.808 47.826 0.00 0.00 43.33 3.42
1114 1151 3.823304 CCTTTTTCTTGCTTCAGGCTAGT 59.177 43.478 0.00 0.00 42.72 2.57
1117 1154 3.769739 TTCTTGCTTCAGGCTAGTTCA 57.230 42.857 0.00 0.00 42.72 3.18
1118 1155 3.769739 TCTTGCTTCAGGCTAGTTCAA 57.230 42.857 0.00 0.00 42.72 2.69
1171 1289 8.506437 CATCATCTTTGTAACTTGTGTGTGTAT 58.494 33.333 0.00 0.00 0.00 2.29
1180 1302 8.460428 TGTAACTTGTGTGTGTATCGATGTATA 58.540 33.333 8.54 0.00 0.00 1.47
1362 1484 4.710375 ACTCCACTGGTAACGATTCACTAT 59.290 41.667 0.00 0.00 42.51 2.12
1376 1498 7.103641 ACGATTCACTATCACATGGTTTTACT 58.896 34.615 0.00 0.00 32.45 2.24
1378 1500 8.450964 CGATTCACTATCACATGGTTTTACTTT 58.549 33.333 0.00 0.00 32.45 2.66
1384 1506 8.073768 ACTATCACATGGTTTTACTTTCGTTTG 58.926 33.333 0.00 0.00 0.00 2.93
1397 1519 6.963049 ACTTTCGTTTGAGCGATAAGTAAT 57.037 33.333 12.25 0.00 40.76 1.89
1401 1523 8.637281 TTTCGTTTGAGCGATAAGTAATATGA 57.363 30.769 0.00 0.00 40.76 2.15
1409 1531 8.297426 TGAGCGATAAGTAATATGAATCGAAGT 58.703 33.333 7.16 0.00 41.38 3.01
1429 1551 2.657372 GTGAGCACTTCTTTACGTCTCG 59.343 50.000 0.00 0.00 0.00 4.04
1430 1552 2.251893 GAGCACTTCTTTACGTCTCGG 58.748 52.381 0.00 0.00 0.00 4.63
1432 1554 1.992170 CACTTCTTTACGTCTCGGGG 58.008 55.000 0.00 0.00 0.00 5.73
1437 1559 2.513753 TCTTTACGTCTCGGGGTGTAA 58.486 47.619 0.00 0.00 0.00 2.41
1671 1798 3.319198 AGGAATGGCACGGACGGT 61.319 61.111 0.00 0.00 0.00 4.83
1674 1801 0.463116 GGAATGGCACGGACGGTTAT 60.463 55.000 0.00 0.00 0.00 1.89
1720 1847 7.658261 CGAGATTCCAATCACACTAGGTATAA 58.342 38.462 2.21 0.00 37.89 0.98
1721 1848 8.307483 CGAGATTCCAATCACACTAGGTATAAT 58.693 37.037 2.21 0.00 37.89 1.28
1772 1956 4.019792 ACATGGTGCAAGTCTTCACATA 57.980 40.909 13.60 6.01 35.04 2.29
1775 1959 3.402110 TGGTGCAAGTCTTCACATACAG 58.598 45.455 13.60 0.00 35.04 2.74
1959 2147 0.778815 GCTTCCATAATCGCGTCGAG 59.221 55.000 5.77 0.00 39.91 4.04
1960 2148 0.778815 CTTCCATAATCGCGTCGAGC 59.221 55.000 5.77 0.00 39.91 5.03
2083 2272 4.596180 CGCATCATCAACGCCGCC 62.596 66.667 0.00 0.00 0.00 6.13
2138 2327 4.657824 ACTTCACCGTGGTCGCCG 62.658 66.667 0.00 0.00 35.54 6.46
2499 2688 2.926242 GTTCGGGGTGGACCAGGA 60.926 66.667 0.00 0.00 42.91 3.86
2946 3140 1.412710 TCCAGGTGAGTGTCTGTGAAC 59.587 52.381 0.00 0.00 0.00 3.18
2976 3174 3.069289 TCATATGCTTTGATGCTAGCCG 58.931 45.455 13.29 0.00 36.56 5.52
2979 3177 0.744414 TGCTTTGATGCTAGCCGTCC 60.744 55.000 13.29 0.00 36.56 4.79
3006 3204 7.380536 TCGGACTGTGTATGTTAAGTTGTTAT 58.619 34.615 0.00 0.00 0.00 1.89
3007 3205 7.874016 TCGGACTGTGTATGTTAAGTTGTTATT 59.126 33.333 0.00 0.00 0.00 1.40
3008 3206 9.142515 CGGACTGTGTATGTTAAGTTGTTATTA 57.857 33.333 0.00 0.00 0.00 0.98
3051 3253 2.275134 TGTGGTTCATGCACTGTCAT 57.725 45.000 0.00 0.00 0.00 3.06
3160 3362 3.067833 GACTTTCCCAAGTGCTACTGAC 58.932 50.000 0.00 0.00 43.79 3.51
3164 3366 1.016130 CCCAAGTGCTACTGACGCAG 61.016 60.000 5.47 5.47 38.19 5.18
3169 3371 3.181967 GCTACTGACGCAGCACCG 61.182 66.667 6.74 0.00 37.73 4.94
3171 3373 1.139734 CTACTGACGCAGCACCGAT 59.860 57.895 6.74 0.00 34.37 4.18
3172 3374 1.142185 CTACTGACGCAGCACCGATG 61.142 60.000 6.74 0.00 34.37 3.84
3173 3375 1.873270 TACTGACGCAGCACCGATGT 61.873 55.000 6.74 2.04 34.37 3.06
3178 3380 0.391130 ACGCAGCACCGATGTATTGT 60.391 50.000 2.96 0.00 0.00 2.71
3182 3384 2.518949 CAGCACCGATGTATTGTTTGC 58.481 47.619 0.00 0.00 0.00 3.68
3206 3408 1.787155 CTTGACAAGTTCGTCGACAGG 59.213 52.381 17.16 0.00 38.84 4.00
3305 3510 6.983474 TCATTATCTTCTTTGCGTTCATGA 57.017 33.333 0.00 0.00 0.00 3.07
3348 3557 3.421844 AGGTGGCTTAGTCAATTGTTCC 58.578 45.455 5.13 0.26 0.00 3.62
3371 3580 5.393962 CAAGCTTTCGGTTCTGAATAAAGG 58.606 41.667 17.17 6.25 0.00 3.11
3374 3583 6.235664 AGCTTTCGGTTCTGAATAAAGGTAA 58.764 36.000 17.91 0.40 36.44 2.85
3376 3585 6.800408 GCTTTCGGTTCTGAATAAAGGTAAAC 59.200 38.462 17.17 0.00 0.00 2.01
3378 3587 6.790285 TCGGTTCTGAATAAAGGTAAACAC 57.210 37.500 0.00 0.00 0.00 3.32
3468 4273 6.002062 TCGAAGAAATTCAGAAAAAGCCTC 57.998 37.500 0.00 0.00 0.00 4.70
3469 4274 4.848299 CGAAGAAATTCAGAAAAAGCCTCG 59.152 41.667 0.00 0.00 0.00 4.63
3470 4275 5.334105 CGAAGAAATTCAGAAAAAGCCTCGA 60.334 40.000 0.00 0.00 0.00 4.04
3473 4282 6.986250 AGAAATTCAGAAAAAGCCTCGATTT 58.014 32.000 0.00 0.00 0.00 2.17
3477 4286 5.607119 TCAGAAAAAGCCTCGATTTACAC 57.393 39.130 0.00 0.00 0.00 2.90
3482 4291 4.663636 AAAGCCTCGATTTACACGAAAG 57.336 40.909 0.00 0.00 39.23 2.62
3614 4436 1.543614 CGAGCAGTTCTCTCACGATG 58.456 55.000 0.00 0.00 39.70 3.84
3630 4452 3.628646 ATGTGCCGGTTCTCCTGGC 62.629 63.158 1.90 5.21 46.05 4.85
3635 4457 2.726351 CCGGTTCTCCTGGCTCCTC 61.726 68.421 0.00 0.00 0.00 3.71
3640 4462 1.135333 GTTCTCCTGGCTCCTCGTTAG 59.865 57.143 0.00 0.00 0.00 2.34
3641 4463 0.331954 TCTCCTGGCTCCTCGTTAGT 59.668 55.000 0.00 0.00 0.00 2.24
3642 4464 1.187087 CTCCTGGCTCCTCGTTAGTT 58.813 55.000 0.00 0.00 0.00 2.24
3643 4465 2.025605 TCTCCTGGCTCCTCGTTAGTTA 60.026 50.000 0.00 0.00 0.00 2.24
3644 4466 2.097825 TCCTGGCTCCTCGTTAGTTAC 58.902 52.381 0.00 0.00 0.00 2.50
3645 4467 2.100989 CCTGGCTCCTCGTTAGTTACT 58.899 52.381 0.00 0.00 0.00 2.24
3646 4468 2.099427 CCTGGCTCCTCGTTAGTTACTC 59.901 54.545 0.00 0.00 0.00 2.59
3647 4469 2.753452 CTGGCTCCTCGTTAGTTACTCA 59.247 50.000 0.00 0.00 0.00 3.41
3648 4470 2.753452 TGGCTCCTCGTTAGTTACTCAG 59.247 50.000 0.00 0.00 0.00 3.35
3649 4471 3.015327 GGCTCCTCGTTAGTTACTCAGA 58.985 50.000 0.00 0.00 0.00 3.27
3745 4579 4.559063 CCGGCCCATCTCCTGCTG 62.559 72.222 0.00 0.00 0.00 4.41
3970 4829 8.233190 TGTTTTTGCTTGAAATTCGTGATTTTT 58.767 25.926 2.10 0.00 38.06 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.527817 CCGACATCGACAACCCTAGC 60.528 60.000 2.09 0.00 43.02 3.42
1 2 0.527817 GCCGACATCGACAACCCTAG 60.528 60.000 2.09 0.00 43.02 3.02
2 3 1.514087 GCCGACATCGACAACCCTA 59.486 57.895 2.09 0.00 43.02 3.53
3 4 2.264794 GCCGACATCGACAACCCT 59.735 61.111 2.09 0.00 43.02 4.34
4 5 2.818274 GGCCGACATCGACAACCC 60.818 66.667 2.09 0.00 43.02 4.11
5 6 3.186047 CGGCCGACATCGACAACC 61.186 66.667 24.07 0.00 43.02 3.77
6 7 3.186047 CCGGCCGACATCGACAAC 61.186 66.667 30.73 0.00 43.02 3.32
9 10 2.894240 TTAAGCCGGCCGACATCGAC 62.894 60.000 30.73 6.52 43.02 4.20
10 11 2.228389 TTTAAGCCGGCCGACATCGA 62.228 55.000 30.73 5.28 43.02 3.59
11 12 1.157870 ATTTAAGCCGGCCGACATCG 61.158 55.000 30.73 10.90 39.44 3.84
12 13 1.798813 CTATTTAAGCCGGCCGACATC 59.201 52.381 30.73 12.69 0.00 3.06
13 14 1.878953 CTATTTAAGCCGGCCGACAT 58.121 50.000 30.73 11.61 0.00 3.06
14 15 0.812412 GCTATTTAAGCCGGCCGACA 60.812 55.000 30.73 5.47 46.25 4.35
15 16 1.939597 GCTATTTAAGCCGGCCGAC 59.060 57.895 30.73 17.62 46.25 4.79
16 17 4.449391 GCTATTTAAGCCGGCCGA 57.551 55.556 30.73 8.66 46.25 5.54
24 25 3.694566 AGGCAAAAGTCCGGCTATTTAAG 59.305 43.478 0.00 0.00 36.06 1.85
25 26 3.692593 GAGGCAAAAGTCCGGCTATTTAA 59.307 43.478 0.00 0.00 38.29 1.52
26 27 3.275999 GAGGCAAAAGTCCGGCTATTTA 58.724 45.455 0.00 0.00 38.29 1.40
27 28 2.092323 GAGGCAAAAGTCCGGCTATTT 58.908 47.619 0.00 0.00 38.29 1.40
28 29 1.751437 GAGGCAAAAGTCCGGCTATT 58.249 50.000 0.00 0.00 38.29 1.73
29 30 0.462047 CGAGGCAAAAGTCCGGCTAT 60.462 55.000 0.00 0.00 38.29 2.97
30 31 1.079405 CGAGGCAAAAGTCCGGCTA 60.079 57.895 0.00 0.00 38.29 3.93
31 32 2.358737 CGAGGCAAAAGTCCGGCT 60.359 61.111 0.00 0.00 41.35 5.52
32 33 3.431725 CCGAGGCAAAAGTCCGGC 61.432 66.667 0.00 0.00 33.47 6.13
33 34 2.746277 CCCGAGGCAAAAGTCCGG 60.746 66.667 0.00 0.00 39.85 5.14
51 52 3.124921 GTGGGGATGTGAACGCCG 61.125 66.667 0.00 0.00 42.14 6.46
52 53 2.750237 GGTGGGGATGTGAACGCC 60.750 66.667 0.00 0.00 40.13 5.68
53 54 3.124921 CGGTGGGGATGTGAACGC 61.125 66.667 0.00 0.00 0.00 4.84
54 55 1.004320 TTCGGTGGGGATGTGAACG 60.004 57.895 0.00 0.00 0.00 3.95
55 56 0.676782 CCTTCGGTGGGGATGTGAAC 60.677 60.000 0.00 0.00 0.00 3.18
56 57 0.838554 TCCTTCGGTGGGGATGTGAA 60.839 55.000 0.00 0.00 0.00 3.18
57 58 1.229368 TCCTTCGGTGGGGATGTGA 60.229 57.895 0.00 0.00 0.00 3.58
58 59 1.221840 CTCCTTCGGTGGGGATGTG 59.778 63.158 0.00 0.00 0.00 3.21
59 60 0.326618 ATCTCCTTCGGTGGGGATGT 60.327 55.000 8.79 0.00 45.05 3.06
60 61 2.532854 ATCTCCTTCGGTGGGGATG 58.467 57.895 8.79 0.00 45.05 3.51
62 63 0.976073 GACATCTCCTTCGGTGGGGA 60.976 60.000 0.00 0.00 41.44 4.81
63 64 1.522569 GACATCTCCTTCGGTGGGG 59.477 63.158 0.00 0.00 0.00 4.96
64 65 1.522569 GGACATCTCCTTCGGTGGG 59.477 63.158 0.00 0.00 33.07 4.61
65 66 1.141881 CGGACATCTCCTTCGGTGG 59.858 63.158 0.00 0.00 33.79 4.61
66 67 0.179134 GACGGACATCTCCTTCGGTG 60.179 60.000 0.00 0.00 33.79 4.94
67 68 2.190756 GACGGACATCTCCTTCGGT 58.809 57.895 0.00 0.00 33.79 4.69
70 71 2.490165 TCCGACGGACATCTCCTTC 58.510 57.895 13.88 0.00 33.79 3.46
71 72 4.757773 TCCGACGGACATCTCCTT 57.242 55.556 13.88 0.00 33.79 3.36
80 81 4.988716 ACCCAGCAGTCCGACGGA 62.989 66.667 13.88 13.88 0.00 4.69
81 82 3.530910 AAACCCAGCAGTCCGACGG 62.531 63.158 7.84 7.84 0.00 4.79
82 83 1.566018 GAAAACCCAGCAGTCCGACG 61.566 60.000 0.00 0.00 0.00 5.12
83 84 0.534203 TGAAAACCCAGCAGTCCGAC 60.534 55.000 0.00 0.00 0.00 4.79
84 85 0.250295 CTGAAAACCCAGCAGTCCGA 60.250 55.000 0.00 0.00 0.00 4.55
85 86 1.237285 CCTGAAAACCCAGCAGTCCG 61.237 60.000 0.00 0.00 32.97 4.79
86 87 1.527433 GCCTGAAAACCCAGCAGTCC 61.527 60.000 0.00 0.00 32.97 3.85
87 88 0.823356 TGCCTGAAAACCCAGCAGTC 60.823 55.000 0.00 0.00 32.97 3.51
88 89 0.396974 TTGCCTGAAAACCCAGCAGT 60.397 50.000 0.00 0.00 32.97 4.40
89 90 0.971386 ATTGCCTGAAAACCCAGCAG 59.029 50.000 0.00 0.00 32.97 4.24
90 91 1.344114 GAATTGCCTGAAAACCCAGCA 59.656 47.619 0.00 0.00 32.97 4.41
91 92 1.338105 GGAATTGCCTGAAAACCCAGC 60.338 52.381 0.00 0.00 32.97 4.85
92 93 1.067635 CGGAATTGCCTGAAAACCCAG 60.068 52.381 0.00 0.00 0.00 4.45
93 94 0.965439 CGGAATTGCCTGAAAACCCA 59.035 50.000 0.00 0.00 0.00 4.51
94 95 0.966179 ACGGAATTGCCTGAAAACCC 59.034 50.000 0.00 0.00 0.00 4.11
95 96 1.339929 ACACGGAATTGCCTGAAAACC 59.660 47.619 3.12 0.00 0.00 3.27
96 97 2.393764 CACACGGAATTGCCTGAAAAC 58.606 47.619 3.12 0.00 0.00 2.43
97 98 1.339610 CCACACGGAATTGCCTGAAAA 59.660 47.619 3.12 0.00 0.00 2.29
98 99 0.958091 CCACACGGAATTGCCTGAAA 59.042 50.000 3.12 0.00 0.00 2.69
99 100 0.893270 CCCACACGGAATTGCCTGAA 60.893 55.000 3.12 0.00 0.00 3.02
100 101 1.303236 CCCACACGGAATTGCCTGA 60.303 57.895 3.12 0.00 0.00 3.86
101 102 1.303236 TCCCACACGGAATTGCCTG 60.303 57.895 0.00 0.00 37.88 4.85
102 103 1.303317 GTCCCACACGGAATTGCCT 60.303 57.895 0.00 0.00 44.47 4.75
103 104 2.340328 GGTCCCACACGGAATTGCC 61.340 63.158 0.00 0.00 44.47 4.52
104 105 2.686816 CGGTCCCACACGGAATTGC 61.687 63.158 0.00 0.00 44.47 3.56
105 106 3.573558 CGGTCCCACACGGAATTG 58.426 61.111 0.00 0.00 44.47 2.32
111 112 1.740296 GACATTCCGGTCCCACACG 60.740 63.158 0.00 0.00 0.00 4.49
112 113 0.673644 CTGACATTCCGGTCCCACAC 60.674 60.000 0.00 0.00 36.97 3.82
113 114 1.125093 ACTGACATTCCGGTCCCACA 61.125 55.000 0.00 0.00 36.97 4.17
114 115 0.391263 GACTGACATTCCGGTCCCAC 60.391 60.000 0.00 0.00 36.65 4.61
115 116 1.980052 GACTGACATTCCGGTCCCA 59.020 57.895 0.00 0.00 36.65 4.37
116 117 4.934989 GACTGACATTCCGGTCCC 57.065 61.111 0.00 0.00 36.65 4.46
149 150 2.930562 ATATGGGGAGGCCCGAGC 60.931 66.667 0.00 0.00 46.66 5.03
150 151 2.294078 GGATATGGGGAGGCCCGAG 61.294 68.421 0.00 0.00 46.66 4.63
151 152 2.203938 GGATATGGGGAGGCCCGA 60.204 66.667 0.00 0.00 46.66 5.14
152 153 3.706373 CGGATATGGGGAGGCCCG 61.706 72.222 0.00 0.00 46.66 6.13
153 154 2.529389 ACGGATATGGGGAGGCCC 60.529 66.667 0.00 0.00 44.51 5.80
154 155 2.593956 GGACGGATATGGGGAGGCC 61.594 68.421 0.00 0.00 0.00 5.19
155 156 1.415672 TTGGACGGATATGGGGAGGC 61.416 60.000 0.00 0.00 0.00 4.70
156 157 1.362224 ATTGGACGGATATGGGGAGG 58.638 55.000 0.00 0.00 0.00 4.30
157 158 4.844349 AATATTGGACGGATATGGGGAG 57.156 45.455 0.00 0.00 0.00 4.30
158 159 4.599676 TCAAATATTGGACGGATATGGGGA 59.400 41.667 0.00 0.00 0.00 4.81
159 160 4.917385 TCAAATATTGGACGGATATGGGG 58.083 43.478 0.00 0.00 0.00 4.96
160 161 5.945784 ACATCAAATATTGGACGGATATGGG 59.054 40.000 0.00 0.00 0.00 4.00
161 162 6.623549 GCACATCAAATATTGGACGGATATGG 60.624 42.308 0.00 0.00 0.00 2.74
162 163 6.317088 GCACATCAAATATTGGACGGATATG 58.683 40.000 0.00 0.00 0.00 1.78
163 164 5.415701 GGCACATCAAATATTGGACGGATAT 59.584 40.000 0.00 0.00 0.00 1.63
164 165 4.759693 GGCACATCAAATATTGGACGGATA 59.240 41.667 0.00 0.00 0.00 2.59
165 166 3.569701 GGCACATCAAATATTGGACGGAT 59.430 43.478 0.00 0.00 0.00 4.18
166 167 2.948979 GGCACATCAAATATTGGACGGA 59.051 45.455 0.00 0.00 0.00 4.69
167 168 2.286950 CGGCACATCAAATATTGGACGG 60.287 50.000 0.00 0.00 0.00 4.79
168 169 2.286950 CCGGCACATCAAATATTGGACG 60.287 50.000 0.00 0.00 0.00 4.79
169 170 2.687935 ACCGGCACATCAAATATTGGAC 59.312 45.455 0.00 0.00 0.00 4.02
170 171 2.948979 GACCGGCACATCAAATATTGGA 59.051 45.455 0.00 0.00 0.00 3.53
171 172 2.687425 TGACCGGCACATCAAATATTGG 59.313 45.455 0.00 0.00 0.00 3.16
172 173 3.378112 ACTGACCGGCACATCAAATATTG 59.622 43.478 0.00 0.00 0.00 1.90
173 174 3.620488 ACTGACCGGCACATCAAATATT 58.380 40.909 0.00 0.00 0.00 1.28
174 175 3.206150 GACTGACCGGCACATCAAATAT 58.794 45.455 0.00 0.00 0.00 1.28
175 176 2.627945 GACTGACCGGCACATCAAATA 58.372 47.619 0.00 0.00 0.00 1.40
176 177 1.453155 GACTGACCGGCACATCAAAT 58.547 50.000 0.00 0.00 0.00 2.32
177 178 0.605319 GGACTGACCGGCACATCAAA 60.605 55.000 0.00 0.00 0.00 2.69
178 179 1.003839 GGACTGACCGGCACATCAA 60.004 57.895 0.00 0.00 0.00 2.57
179 180 2.662596 GGACTGACCGGCACATCA 59.337 61.111 0.00 0.00 0.00 3.07
189 190 3.966026 CTCGAACGCCCGGACTGAC 62.966 68.421 0.73 0.00 0.00 3.51
190 191 3.744719 CTCGAACGCCCGGACTGA 61.745 66.667 0.73 0.00 0.00 3.41
191 192 4.796231 CCTCGAACGCCCGGACTG 62.796 72.222 0.73 0.00 0.00 3.51
199 200 4.084888 CAAACGGGCCTCGAACGC 62.085 66.667 18.74 0.00 42.43 4.84
200 201 2.356553 TCAAACGGGCCTCGAACG 60.357 61.111 18.74 8.62 42.43 3.95
201 202 0.391263 ATCTCAAACGGGCCTCGAAC 60.391 55.000 18.74 0.00 42.43 3.95
202 203 0.391130 CATCTCAAACGGGCCTCGAA 60.391 55.000 18.74 2.73 42.43 3.71
203 204 1.218047 CATCTCAAACGGGCCTCGA 59.782 57.895 18.74 0.92 42.43 4.04
204 205 1.079127 ACATCTCAAACGGGCCTCG 60.079 57.895 0.84 7.48 45.88 4.63
205 206 0.250513 AGACATCTCAAACGGGCCTC 59.749 55.000 0.84 0.00 0.00 4.70
206 207 0.036010 CAGACATCTCAAACGGGCCT 60.036 55.000 0.84 0.00 0.00 5.19
207 208 0.321653 ACAGACATCTCAAACGGGCC 60.322 55.000 0.00 0.00 0.00 5.80
208 209 1.079503 GACAGACATCTCAAACGGGC 58.920 55.000 0.00 0.00 0.00 6.13
209 210 2.341257 CAGACAGACATCTCAAACGGG 58.659 52.381 0.00 0.00 0.00 5.28
210 211 2.341257 CCAGACAGACATCTCAAACGG 58.659 52.381 0.00 0.00 0.00 4.44
211 212 2.289072 ACCCAGACAGACATCTCAAACG 60.289 50.000 0.00 0.00 0.00 3.60
212 213 3.330267 GACCCAGACAGACATCTCAAAC 58.670 50.000 0.00 0.00 0.00 2.93
213 214 2.029020 CGACCCAGACAGACATCTCAAA 60.029 50.000 0.00 0.00 0.00 2.69
214 215 1.546029 CGACCCAGACAGACATCTCAA 59.454 52.381 0.00 0.00 0.00 3.02
215 216 1.177401 CGACCCAGACAGACATCTCA 58.823 55.000 0.00 0.00 0.00 3.27
216 217 0.457851 CCGACCCAGACAGACATCTC 59.542 60.000 0.00 0.00 0.00 2.75
217 218 1.608717 GCCGACCCAGACAGACATCT 61.609 60.000 0.00 0.00 0.00 2.90
218 219 1.153549 GCCGACCCAGACAGACATC 60.154 63.158 0.00 0.00 0.00 3.06
219 220 1.194781 AAGCCGACCCAGACAGACAT 61.195 55.000 0.00 0.00 0.00 3.06
220 221 1.407656 AAAGCCGACCCAGACAGACA 61.408 55.000 0.00 0.00 0.00 3.41
221 222 0.250338 AAAAGCCGACCCAGACAGAC 60.250 55.000 0.00 0.00 0.00 3.51
222 223 0.472471 AAAAAGCCGACCCAGACAGA 59.528 50.000 0.00 0.00 0.00 3.41
223 224 3.021451 AAAAAGCCGACCCAGACAG 57.979 52.632 0.00 0.00 0.00 3.51
250 251 1.079336 GGACGCCCTGGTTAGTGAC 60.079 63.158 0.00 0.00 0.00 3.67
251 252 1.534476 TGGACGCCCTGGTTAGTGA 60.534 57.895 0.00 0.00 0.00 3.41
252 253 1.375523 GTGGACGCCCTGGTTAGTG 60.376 63.158 0.00 0.00 0.00 2.74
253 254 2.590114 GGTGGACGCCCTGGTTAGT 61.590 63.158 0.00 0.00 0.00 2.24
254 255 2.267961 GGTGGACGCCCTGGTTAG 59.732 66.667 0.00 0.00 0.00 2.34
255 256 3.324108 GGGTGGACGCCCTGGTTA 61.324 66.667 13.62 0.00 45.22 2.85
264 265 4.884257 CATACGCCCGGGTGGACG 62.884 72.222 36.25 25.82 38.88 4.79
265 266 4.540735 CCATACGCCCGGGTGGAC 62.541 72.222 36.25 12.59 37.49 4.02
266 267 4.781616 TCCATACGCCCGGGTGGA 62.782 66.667 36.25 31.14 38.37 4.02
267 268 4.235762 CTCCATACGCCCGGGTGG 62.236 72.222 36.25 27.76 37.09 4.61
268 269 4.235762 CCTCCATACGCCCGGGTG 62.236 72.222 32.55 32.55 0.00 4.61
287 288 3.015753 GTCTCAACCCCCTCCCCC 61.016 72.222 0.00 0.00 0.00 5.40
288 289 3.400054 CGTCTCAACCCCCTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
289 290 4.097361 GCGTCTCAACCCCCTCCC 62.097 72.222 0.00 0.00 0.00 4.30
290 291 4.097361 GGCGTCTCAACCCCCTCC 62.097 72.222 0.00 0.00 0.00 4.30
291 292 4.097361 GGGCGTCTCAACCCCCTC 62.097 72.222 0.00 0.00 39.99 4.30
294 295 4.754667 GTCGGGCGTCTCAACCCC 62.755 72.222 0.00 0.00 43.86 4.95
295 296 3.692406 AGTCGGGCGTCTCAACCC 61.692 66.667 0.00 0.00 43.25 4.11
296 297 1.870055 TACAGTCGGGCGTCTCAACC 61.870 60.000 0.00 0.00 0.00 3.77
297 298 0.456312 CTACAGTCGGGCGTCTCAAC 60.456 60.000 0.00 0.00 0.00 3.18
298 299 0.607217 TCTACAGTCGGGCGTCTCAA 60.607 55.000 0.00 0.00 0.00 3.02
299 300 0.393944 ATCTACAGTCGGGCGTCTCA 60.394 55.000 0.00 0.00 0.00 3.27
300 301 0.029567 CATCTACAGTCGGGCGTCTC 59.970 60.000 0.00 0.00 0.00 3.36
301 302 2.005960 GCATCTACAGTCGGGCGTCT 62.006 60.000 0.00 0.00 0.00 4.18
302 303 1.589196 GCATCTACAGTCGGGCGTC 60.589 63.158 0.00 0.00 0.00 5.19
303 304 2.005960 GAGCATCTACAGTCGGGCGT 62.006 60.000 0.00 0.00 0.00 5.68
304 305 1.299468 GAGCATCTACAGTCGGGCG 60.299 63.158 0.00 0.00 0.00 6.13
305 306 4.740235 GAGCATCTACAGTCGGGC 57.260 61.111 0.00 0.00 0.00 6.13
339 340 6.560253 ATTAAGATGTTGCGGGATTATCAC 57.440 37.500 0.00 0.00 0.00 3.06
449 456 1.795768 ACGTGCGTTGACTTGATCAT 58.204 45.000 0.00 0.00 37.11 2.45
467 474 6.095160 CCGTCACCTCCCTATGTATTCTATAC 59.905 46.154 0.00 0.00 0.00 1.47
476 483 0.260816 TAGCCGTCACCTCCCTATGT 59.739 55.000 0.00 0.00 0.00 2.29
561 568 8.930846 ATGGGATTGATATCGAGAAAGATTTT 57.069 30.769 0.00 0.00 32.39 1.82
584 591 2.886081 CTCAGAGAACGAGGGACAATG 58.114 52.381 0.00 0.00 0.00 2.82
585 592 1.205893 GCTCAGAGAACGAGGGACAAT 59.794 52.381 0.00 0.00 0.00 2.71
587 594 1.251527 GGCTCAGAGAACGAGGGACA 61.252 60.000 0.00 0.00 0.00 4.02
588 595 1.513622 GGCTCAGAGAACGAGGGAC 59.486 63.158 0.00 0.00 0.00 4.46
589 596 1.682684 GGGCTCAGAGAACGAGGGA 60.683 63.158 0.00 0.00 0.00 4.20
595 602 2.817396 GCAGCGGGCTCAGAGAAC 60.817 66.667 0.00 0.00 40.25 3.01
611 620 3.365265 CCAAGGTCAACCCTGCGC 61.365 66.667 0.00 0.00 45.47 6.09
614 623 0.400213 TAGCACCAAGGTCAACCCTG 59.600 55.000 0.00 0.00 45.47 4.45
645 664 8.974060 AGACTACTTCAACAGGAAATTTACAA 57.026 30.769 2.58 0.00 34.44 2.41
659 678 8.462811 TGCAATTTGTGTTTTAGACTACTTCAA 58.537 29.630 0.00 0.00 0.00 2.69
671 690 0.936600 GCGGCTGCAATTTGTGTTTT 59.063 45.000 14.08 0.00 42.15 2.43
672 691 0.104671 AGCGGCTGCAATTTGTGTTT 59.895 45.000 21.93 0.00 46.23 2.83
708 727 3.181497 ACGTAGCTTAATCGCGGAAGTAA 60.181 43.478 6.13 0.00 34.40 2.24
758 777 0.799917 CAGACTGCGACGAGGACATG 60.800 60.000 0.00 0.00 0.00 3.21
764 783 2.544480 TGTAATCAGACTGCGACGAG 57.456 50.000 0.00 0.00 0.00 4.18
776 795 2.532723 GCTCGCGTTAACGATGTAATCA 59.467 45.455 31.03 5.66 45.97 2.57
886 909 9.489084 GATATATAGCCACTTGTTATCAACACA 57.511 33.333 0.00 0.00 41.97 3.72
917 940 4.592485 AGCTTGGTCGTCCTTCTATATG 57.408 45.455 0.00 0.00 34.23 1.78
939 962 3.136626 ACCAGAAAACTGTAGGCTTGTCT 59.863 43.478 0.00 0.00 0.00 3.41
940 963 3.477530 ACCAGAAAACTGTAGGCTTGTC 58.522 45.455 0.00 0.00 0.00 3.18
941 964 3.577805 ACCAGAAAACTGTAGGCTTGT 57.422 42.857 0.00 0.00 0.00 3.16
942 965 4.610945 CAAACCAGAAAACTGTAGGCTTG 58.389 43.478 0.00 0.00 0.00 4.01
943 966 3.068165 GCAAACCAGAAAACTGTAGGCTT 59.932 43.478 0.00 0.00 0.00 4.35
944 967 2.623416 GCAAACCAGAAAACTGTAGGCT 59.377 45.455 0.00 0.00 0.00 4.58
945 968 2.623416 AGCAAACCAGAAAACTGTAGGC 59.377 45.455 0.00 0.00 0.00 3.93
946 969 6.575162 ATTAGCAAACCAGAAAACTGTAGG 57.425 37.500 0.00 0.00 0.00 3.18
947 970 7.648142 TCAATTAGCAAACCAGAAAACTGTAG 58.352 34.615 0.00 0.00 0.00 2.74
957 980 5.100259 CAGCAAGATCAATTAGCAAACCAG 58.900 41.667 0.00 0.00 0.00 4.00
959 982 3.861689 GCAGCAAGATCAATTAGCAAACC 59.138 43.478 0.00 0.00 0.00 3.27
969 992 0.800631 CGAAGCAGCAGCAAGATCAA 59.199 50.000 3.17 0.00 45.49 2.57
986 1010 2.966732 GCCATCACCCCAACTCCGA 61.967 63.158 0.00 0.00 0.00 4.55
987 1011 2.438434 GCCATCACCCCAACTCCG 60.438 66.667 0.00 0.00 0.00 4.63
1039 1075 4.393155 TGCCGCTCTTGCCATCGT 62.393 61.111 0.00 0.00 35.36 3.73
1041 1077 2.437359 ACTGCCGCTCTTGCCATC 60.437 61.111 0.00 0.00 35.36 3.51
1053 1089 2.280797 TTGTGCTCCACGACTGCC 60.281 61.111 0.00 0.00 37.14 4.85
1102 1139 5.334724 GCATATGATTGAACTAGCCTGAAGC 60.335 44.000 6.97 0.00 44.25 3.86
1103 1140 5.180868 GGCATATGATTGAACTAGCCTGAAG 59.819 44.000 6.97 0.00 37.89 3.02
1106 1143 3.755378 GGGCATATGATTGAACTAGCCTG 59.245 47.826 6.97 0.00 40.61 4.85
1107 1144 3.395607 TGGGCATATGATTGAACTAGCCT 59.604 43.478 6.97 0.00 40.61 4.58
1108 1145 3.754965 TGGGCATATGATTGAACTAGCC 58.245 45.455 6.97 0.00 40.08 3.93
1109 1146 4.022849 GGTTGGGCATATGATTGAACTAGC 60.023 45.833 6.97 0.00 0.00 3.42
1110 1147 5.132502 TGGTTGGGCATATGATTGAACTAG 58.867 41.667 6.97 0.00 0.00 2.57
1111 1148 5.122707 TGGTTGGGCATATGATTGAACTA 57.877 39.130 6.97 0.00 0.00 2.24
1112 1149 3.979911 TGGTTGGGCATATGATTGAACT 58.020 40.909 6.97 0.00 0.00 3.01
1113 1150 4.501915 CCATGGTTGGGCATATGATTGAAC 60.502 45.833 6.97 3.16 39.56 3.18
1114 1151 3.642377 CCATGGTTGGGCATATGATTGAA 59.358 43.478 6.97 0.00 39.56 2.69
1171 1289 5.128992 ACGTGTTGGCATATATACATCGA 57.871 39.130 13.87 0.00 0.00 3.59
1180 1302 1.134220 CCCACCTACGTGTTGGCATAT 60.134 52.381 0.00 0.00 38.41 1.78
1376 1498 8.637281 TCATATTACTTATCGCTCAAACGAAA 57.363 30.769 0.00 0.00 46.59 3.46
1384 1506 8.579600 CACTTCGATTCATATTACTTATCGCTC 58.420 37.037 0.00 0.00 38.30 5.03
1409 1531 2.351447 CCGAGACGTAAAGAAGTGCTCA 60.351 50.000 0.00 0.00 0.00 4.26
1426 1548 0.886563 AGTTCGACTTACACCCCGAG 59.113 55.000 0.00 0.00 32.41 4.63
1437 1559 2.165167 TGATGACCCGTAAGTTCGACT 58.835 47.619 0.00 0.00 0.00 4.18
1500 1627 1.264045 TGATCATGTGAGCCCCGTCA 61.264 55.000 0.00 0.00 0.00 4.35
1671 1798 4.114073 CGTATGGTGCTTTGTACGGATAA 58.886 43.478 0.00 0.00 37.02 1.75
1674 1801 1.999048 CGTATGGTGCTTTGTACGGA 58.001 50.000 0.00 0.00 37.02 4.69
1682 1809 0.178068 AATCTCGCCGTATGGTGCTT 59.822 50.000 9.84 0.89 45.79 3.91
1743 1873 4.144297 AGACTTGCACCATGTATGTTTGT 58.856 39.130 0.00 0.00 0.00 2.83
1772 1956 1.683385 GCCTGCCAAAGAAAGAACTGT 59.317 47.619 0.00 0.00 0.00 3.55
1775 1959 0.951558 TCGCCTGCCAAAGAAAGAAC 59.048 50.000 0.00 0.00 0.00 3.01
2003 2192 3.915437 ACCAGCACCTAATTTTGTTCG 57.085 42.857 0.00 0.00 0.00 3.95
2083 2272 2.270275 AGAAGAGCTCGACATTGACG 57.730 50.000 8.37 2.05 0.00 4.35
2138 2327 2.576317 GGTGTAGCTCGCGTCGAC 60.576 66.667 5.77 5.18 0.00 4.20
2235 2424 1.525442 GCCATGTAGTACCGGCCTT 59.475 57.895 16.50 0.00 38.67 4.35
2236 2425 2.792947 CGCCATGTAGTACCGGCCT 61.793 63.158 19.82 0.00 41.71 5.19
2449 2638 3.155861 TGGTCCACCGTCGTTGGT 61.156 61.111 8.81 0.00 45.21 3.67
2684 2873 1.671379 GGTTCACCCTCTTCACCGC 60.671 63.158 0.00 0.00 0.00 5.68
2823 3012 4.323477 TGGCGTTGGGGTCGAAGG 62.323 66.667 0.00 0.00 0.00 3.46
2893 3082 3.612251 CGTATGACGGTCCACCCT 58.388 61.111 5.55 0.00 38.08 4.34
2946 3140 5.290158 GCATCAAAGCATATGAACCAAACAG 59.710 40.000 6.97 0.00 0.00 3.16
2979 3177 5.637810 ACAACTTAACATACACAGTCCGATG 59.362 40.000 0.00 0.00 0.00 3.84
3006 3204 2.794957 ACAGCCATGGCGGTAGGTTAA 61.795 52.381 36.75 0.00 46.75 2.01
3007 3205 1.268992 ACAGCCATGGCGGTAGGTTA 61.269 55.000 36.75 0.00 46.75 2.85
3008 3206 1.268992 TACAGCCATGGCGGTAGGTT 61.269 55.000 36.37 20.73 46.75 3.50
3160 3362 0.726827 AACAATACATCGGTGCTGCG 59.273 50.000 0.00 0.00 0.00 5.18
3164 3366 2.627863 TGCAAACAATACATCGGTGC 57.372 45.000 0.00 0.00 0.00 5.01
3167 3369 3.425577 AGCATGCAAACAATACATCGG 57.574 42.857 21.98 0.00 0.00 4.18
3169 3371 5.162794 TGTCAAGCATGCAAACAATACATC 58.837 37.500 21.98 0.00 0.00 3.06
3171 3373 4.581077 TGTCAAGCATGCAAACAATACA 57.419 36.364 21.98 10.72 0.00 2.29
3172 3374 4.984161 ACTTGTCAAGCATGCAAACAATAC 59.016 37.500 23.84 12.31 0.00 1.89
3173 3375 5.199024 ACTTGTCAAGCATGCAAACAATA 57.801 34.783 23.84 10.45 0.00 1.90
3178 3380 2.098934 ACGAACTTGTCAAGCATGCAAA 59.901 40.909 21.98 0.93 0.00 3.68
3182 3384 1.792367 TCGACGAACTTGTCAAGCATG 59.208 47.619 12.66 4.92 38.84 4.06
3206 3408 5.992217 GTGTCCCATACAATATCTCACTTCC 59.008 44.000 0.00 0.00 40.63 3.46
3246 3448 6.183361 TGGCTGGCAGTACATTATACTTGTAT 60.183 38.462 17.16 0.00 32.56 2.29
3264 3469 1.748493 TGAAATAAATCCGTGGCTGGC 59.252 47.619 0.00 0.00 0.00 4.85
3305 3510 8.023128 CACCTTCGAAACAAGTATCAAATCAAT 58.977 33.333 0.00 0.00 0.00 2.57
3348 3557 5.048713 ACCTTTATTCAGAACCGAAAGCTTG 60.049 40.000 0.00 0.00 0.00 4.01
3378 3587 5.815740 GGGTGGTCACTAGTACACATAAATG 59.184 44.000 19.74 0.00 35.62 2.32
3387 4191 4.347360 AAACTTGGGTGGTCACTAGTAC 57.653 45.455 0.00 0.00 0.00 2.73
3389 4193 3.945640 AAAACTTGGGTGGTCACTAGT 57.054 42.857 0.00 0.00 0.00 2.57
3395 4199 4.645136 AGAAGAAGAAAAACTTGGGTGGTC 59.355 41.667 0.00 0.00 39.13 4.02
3468 4273 5.389516 CCTTTCTCCACTTTCGTGTAAATCG 60.390 44.000 0.00 0.00 39.55 3.34
3469 4274 5.106673 CCCTTTCTCCACTTTCGTGTAAATC 60.107 44.000 0.00 0.00 39.55 2.17
3470 4275 4.760204 CCCTTTCTCCACTTTCGTGTAAAT 59.240 41.667 0.00 0.00 39.55 1.40
3473 4282 2.967201 TCCCTTTCTCCACTTTCGTGTA 59.033 45.455 0.00 0.00 39.55 2.90
3477 4286 2.814336 CCTTTCCCTTTCTCCACTTTCG 59.186 50.000 0.00 0.00 0.00 3.46
3482 4291 2.951229 TGTCCTTTCCCTTTCTCCAC 57.049 50.000 0.00 0.00 0.00 4.02
3552 4361 3.004734 ACGGAAGCCTTTGTGAGATTTTG 59.995 43.478 0.00 0.00 0.00 2.44
3630 4452 3.628487 CCCTCTGAGTAACTAACGAGGAG 59.372 52.174 3.66 0.00 40.27 3.69
3635 4457 3.802948 ATGCCCTCTGAGTAACTAACG 57.197 47.619 3.66 0.00 0.00 3.18
3640 4462 3.636153 AGGAAATGCCCTCTGAGTAAC 57.364 47.619 3.66 0.00 37.37 2.50
3641 4463 5.497474 GTTTAGGAAATGCCCTCTGAGTAA 58.503 41.667 3.66 0.00 37.74 2.24
3642 4464 4.382685 CGTTTAGGAAATGCCCTCTGAGTA 60.383 45.833 3.66 0.00 37.74 2.59
3643 4465 3.619979 CGTTTAGGAAATGCCCTCTGAGT 60.620 47.826 3.66 0.00 37.74 3.41
3644 4466 2.939103 CGTTTAGGAAATGCCCTCTGAG 59.061 50.000 0.00 0.00 37.74 3.35
3645 4467 2.355716 CCGTTTAGGAAATGCCCTCTGA 60.356 50.000 0.00 0.00 45.00 3.27
3646 4468 2.017049 CCGTTTAGGAAATGCCCTCTG 58.983 52.381 0.00 0.00 45.00 3.35
3647 4469 1.682087 GCCGTTTAGGAAATGCCCTCT 60.682 52.381 0.00 0.00 45.00 3.69
3648 4470 0.738975 GCCGTTTAGGAAATGCCCTC 59.261 55.000 0.00 0.00 45.00 4.30
3649 4471 1.029947 CGCCGTTTAGGAAATGCCCT 61.030 55.000 0.00 0.00 45.00 5.19
3761 4595 1.227089 CGCTGGTTCGATCCTCTGG 60.227 63.158 13.55 3.31 0.00 3.86
4052 4970 5.782893 AGTTCATCGGATTTGGAAAAACA 57.217 34.783 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.