Multiple sequence alignment - TraesCS3D01G358100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G358100 chr3D 100.000 3854 0 0 1 3854 471422034 471418181 0.000000e+00 7118.0
1 TraesCS3D01G358100 chr3D 87.007 1293 138 12 834 2106 419875367 419874085 0.000000e+00 1430.0
2 TraesCS3D01G358100 chr3D 98.925 279 3 0 2104 2382 384001175 384000897 2.070000e-137 499.0
3 TraesCS3D01G358100 chr3D 94.737 133 7 0 3653 3785 8890104 8890236 1.400000e-49 207.0
4 TraesCS3D01G358100 chr3B 94.375 2151 75 16 1 2106 626303976 626301827 0.000000e+00 3260.0
5 TraesCS3D01G358100 chr3B 96.813 502 16 0 2382 2883 626301836 626301335 0.000000e+00 839.0
6 TraesCS3D01G358100 chr3B 86.136 339 23 13 2899 3230 626301186 626300865 1.030000e-90 344.0
7 TraesCS3D01G358100 chr3B 92.157 204 16 0 3651 3854 525016434 525016231 4.870000e-74 289.0
8 TraesCS3D01G358100 chr3B 90.385 208 13 5 3198 3400 626300859 626300654 2.280000e-67 267.0
9 TraesCS3D01G358100 chr3B 88.199 161 6 5 3502 3649 428201293 428201133 3.060000e-41 180.0
10 TraesCS3D01G358100 chr3B 94.737 57 3 0 3393 3449 626252286 626252230 5.300000e-14 89.8
11 TraesCS3D01G358100 chr3A 97.851 1210 24 2 898 2106 614239416 614238208 0.000000e+00 2089.0
12 TraesCS3D01G358100 chr3A 95.515 981 41 3 1127 2106 614126310 614125332 0.000000e+00 1565.0
13 TraesCS3D01G358100 chr3A 84.505 1536 160 39 630 2106 531453893 531455409 0.000000e+00 1447.0
14 TraesCS3D01G358100 chr3A 88.544 1161 68 21 1 1118 614127671 614126533 0.000000e+00 1347.0
15 TraesCS3D01G358100 chr3A 97.690 606 14 0 1 606 614240022 614239417 0.000000e+00 1042.0
16 TraesCS3D01G358100 chr3A 93.695 682 36 7 2382 3057 614238217 614237537 0.000000e+00 1014.0
17 TraesCS3D01G358100 chr3A 89.744 741 40 16 2382 3113 614125341 614124628 0.000000e+00 915.0
18 TraesCS3D01G358100 chr3A 96.809 282 8 1 2102 2382 323392880 323393161 1.620000e-128 470.0
19 TraesCS3D01G358100 chr3A 90.588 170 10 4 3258 3421 614237401 614237232 1.800000e-53 220.0
20 TraesCS3D01G358100 chr3A 86.275 153 10 4 3500 3641 688940892 688940740 5.160000e-34 156.0
21 TraesCS3D01G358100 chr4A 95.760 283 11 1 2101 2382 617221891 617221609 4.540000e-124 455.0
22 TraesCS3D01G358100 chr4A 86.726 113 14 1 3651 3763 536007765 536007876 1.450000e-24 124.0
23 TraesCS3D01G358100 chr7A 95.714 280 12 0 2103 2382 567451279 567451000 5.870000e-123 451.0
24 TraesCS3D01G358100 chr6A 96.043 278 10 1 2106 2383 523516411 523516135 5.870000e-123 451.0
25 TraesCS3D01G358100 chr2A 94.982 279 12 2 2105 2382 307690461 307690738 1.640000e-118 436.0
26 TraesCS3D01G358100 chr2A 85.366 164 11 4 3499 3649 115805592 115805755 1.430000e-34 158.0
27 TraesCS3D01G358100 chr2A 86.111 144 18 2 3712 3854 119274135 119273993 1.850000e-33 154.0
28 TraesCS3D01G358100 chr2A 89.623 106 7 4 3544 3647 174460807 174460910 8.690000e-27 132.0
29 TraesCS3D01G358100 chr1D 95.000 280 8 1 2103 2382 332229370 332229097 5.910000e-118 435.0
30 TraesCS3D01G358100 chr1D 85.849 212 27 3 3644 3854 376902486 376902695 5.010000e-54 222.0
31 TraesCS3D01G358100 chr7D 93.907 279 15 2 2106 2382 550890969 550890691 1.660000e-113 420.0
32 TraesCS3D01G358100 chr4B 93.571 280 18 0 2103 2382 174700682 174700961 5.960000e-113 418.0
33 TraesCS3D01G358100 chr4B 85.625 160 11 4 3502 3649 397811711 397811552 1.430000e-34 158.0
34 TraesCS3D01G358100 chr4B 92.500 40 3 0 3110 3149 172380080 172380041 1.500000e-04 58.4
35 TraesCS3D01G358100 chr5B 92.718 206 15 0 3649 3854 678420103 678420308 8.090000e-77 298.0
36 TraesCS3D01G358100 chr5B 87.975 158 7 6 3504 3649 700597536 700597693 3.960000e-40 176.0
37 TraesCS3D01G358100 chr5B 87.931 58 7 0 1981 2038 441638029 441637972 6.910000e-08 69.4
38 TraesCS3D01G358100 chr2D 86.321 212 26 3 3644 3854 617247237 617247446 1.080000e-55 228.0
39 TraesCS3D01G358100 chr1A 90.323 155 4 3 3504 3647 441834751 441834597 3.930000e-45 193.0
40 TraesCS3D01G358100 chr1A 89.677 155 5 3 3504 3647 23067066 23066912 1.830000e-43 187.0
41 TraesCS3D01G358100 chr1A 86.184 152 9 5 3502 3641 341155755 341155604 1.850000e-33 154.0
42 TraesCS3D01G358100 chr2B 88.608 158 6 1 3502 3647 693228573 693228730 8.510000e-42 182.0
43 TraesCS3D01G358100 chr2B 97.647 85 2 0 3565 3649 60962337 60962253 3.100000e-31 147.0
44 TraesCS3D01G358100 chrUn 88.462 156 6 5 3506 3649 31720046 31720201 1.100000e-40 178.0
45 TraesCS3D01G358100 chr1B 88.462 156 6 5 3506 3649 279905729 279905884 1.100000e-40 178.0
46 TraesCS3D01G358100 chr1B 86.897 145 7 4 3517 3649 624018128 624017984 6.670000e-33 152.0
47 TraesCS3D01G358100 chr1B 83.607 122 20 0 2514 2635 52350656 52350535 8.750000e-22 115.0
48 TraesCS3D01G358100 chr6B 86.585 164 8 5 3490 3641 705712174 705712013 6.620000e-38 169.0
49 TraesCS3D01G358100 chr5A 80.319 188 34 1 2411 2598 113608346 113608530 5.190000e-29 139.0
50 TraesCS3D01G358100 chr5A 87.931 58 7 0 1981 2038 474816717 474816660 6.910000e-08 69.4
51 TraesCS3D01G358100 chr5D 83.333 90 15 0 2528 2617 384737560 384737471 2.470000e-12 84.2
52 TraesCS3D01G358100 chr5D 82.759 87 15 0 2528 2614 384983211 384983297 1.150000e-10 78.7
53 TraesCS3D01G358100 chr5D 87.931 58 7 0 1981 2038 371786575 371786518 6.910000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G358100 chr3D 471418181 471422034 3853 True 7118.000000 7118 100.000000 1 3854 1 chr3D.!!$R3 3853
1 TraesCS3D01G358100 chr3D 419874085 419875367 1282 True 1430.000000 1430 87.007000 834 2106 1 chr3D.!!$R2 1272
2 TraesCS3D01G358100 chr3B 626300654 626303976 3322 True 1177.500000 3260 91.927250 1 3400 4 chr3B.!!$R4 3399
3 TraesCS3D01G358100 chr3A 531453893 531455409 1516 False 1447.000000 1447 84.505000 630 2106 1 chr3A.!!$F2 1476
4 TraesCS3D01G358100 chr3A 614124628 614127671 3043 True 1275.666667 1565 91.267667 1 3113 3 chr3A.!!$R2 3112
5 TraesCS3D01G358100 chr3A 614237232 614240022 2790 True 1091.250000 2089 94.956000 1 3421 4 chr3A.!!$R3 3420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 642 2.159627 GCACCATTCCTTGACTGTAACG 59.840 50.0 0.00 0.0 0.0 3.18 F
2211 2502 0.322277 CAGAGTGAGGGTGCTGCAAT 60.322 55.0 2.77 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 2568 0.108138 AAATCAAGGAGGAGGCGACG 60.108 55.0 0.0 0.0 0.0 5.12 R
3676 4185 0.108424 AGCAGAGGACGATGACAAGC 60.108 55.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.265791 CTGCAGGTCTGGTCTTGTATTC 58.734 50.000 5.57 0.00 0.00 1.75
74 76 4.719773 TCCAAAGACTAGGCCTAATTGCTA 59.280 41.667 14.85 5.49 0.00 3.49
226 228 4.298332 GGAACAATTGCGTTTTCAGTGAT 58.702 39.130 5.05 0.00 0.00 3.06
273 276 2.417933 GCTGACAGTTGCTAGTGAATGG 59.582 50.000 10.06 0.00 0.00 3.16
283 286 3.052869 TGCTAGTGAATGGACCCTCTAGA 60.053 47.826 8.63 0.00 0.00 2.43
610 642 2.159627 GCACCATTCCTTGACTGTAACG 59.840 50.000 0.00 0.00 0.00 3.18
643 677 6.869206 AAACCTATTGTTGGCTACTCTAGA 57.131 37.500 0.01 0.00 37.23 2.43
647 681 7.501844 ACCTATTGTTGGCTACTCTAGATTTC 58.498 38.462 0.00 0.00 0.00 2.17
657 691 7.117812 TGGCTACTCTAGATTTCGTTCAAAAAG 59.882 37.037 0.00 0.00 0.00 2.27
868 940 3.684103 TTTTGTACAAGCGTGAACAGG 57.316 42.857 6.65 0.00 0.00 4.00
959 1033 8.877864 ACAATCCCAGTGATCAACTATTTTTA 57.122 30.769 0.00 0.00 36.83 1.52
1774 2063 5.435686 ACCTTCTATTGCACCACATCTTA 57.564 39.130 0.00 0.00 0.00 2.10
1785 2074 3.686726 CACCACATCTTAAGACTCTTGCC 59.313 47.826 7.48 0.00 0.00 4.52
1982 2272 4.787135 TTATGATGATGCTGTTACCCCA 57.213 40.909 0.00 0.00 0.00 4.96
2044 2334 2.368875 GTCCTGTCCTGGAGAGTTTCAA 59.631 50.000 18.46 0.00 36.69 2.69
2085 2376 2.750948 TCACGCTTCAAAGGTGTCTAC 58.249 47.619 9.62 0.00 32.55 2.59
2102 2393 2.158740 TCTACTATCTGCTGCGGAGACT 60.159 50.000 17.21 4.05 0.00 3.24
2103 2394 1.479709 ACTATCTGCTGCGGAGACTT 58.520 50.000 17.21 2.41 0.00 3.01
2104 2395 1.827969 ACTATCTGCTGCGGAGACTTT 59.172 47.619 17.21 2.02 0.00 2.66
2105 2396 2.234908 ACTATCTGCTGCGGAGACTTTT 59.765 45.455 17.21 1.27 0.00 2.27
2106 2397 2.191128 ATCTGCTGCGGAGACTTTTT 57.809 45.000 17.21 0.00 0.00 1.94
2128 2419 4.868450 TTTTTCGAGAAAACGCAGAAGA 57.132 36.364 10.18 0.00 39.70 2.87
2129 2420 5.418310 TTTTTCGAGAAAACGCAGAAGAT 57.582 34.783 10.18 0.00 39.70 2.40
2130 2421 5.418310 TTTTCGAGAAAACGCAGAAGATT 57.582 34.783 6.89 0.00 35.57 2.40
2131 2422 5.418310 TTTCGAGAAAACGCAGAAGATTT 57.582 34.783 0.00 0.00 0.00 2.17
2132 2423 4.389664 TCGAGAAAACGCAGAAGATTTG 57.610 40.909 0.00 0.00 0.00 2.32
2133 2424 2.904932 CGAGAAAACGCAGAAGATTTGC 59.095 45.455 0.00 0.00 38.18 3.68
2142 2433 4.557276 GCAGAAGATTTGCGTTTCATTG 57.443 40.909 0.00 0.00 0.00 2.82
2143 2434 3.181537 GCAGAAGATTTGCGTTTCATTGC 60.182 43.478 0.00 0.00 0.00 3.56
2144 2435 3.982701 CAGAAGATTTGCGTTTCATTGCA 59.017 39.130 0.00 0.00 39.81 4.08
2145 2436 4.624024 CAGAAGATTTGCGTTTCATTGCAT 59.376 37.500 0.00 0.00 41.42 3.96
2146 2437 5.119588 CAGAAGATTTGCGTTTCATTGCATT 59.880 36.000 0.00 0.00 41.42 3.56
2147 2438 4.914312 AGATTTGCGTTTCATTGCATTG 57.086 36.364 2.08 2.08 41.42 2.82
2148 2439 4.558178 AGATTTGCGTTTCATTGCATTGA 58.442 34.783 7.19 7.19 41.42 2.57
2149 2440 4.989797 AGATTTGCGTTTCATTGCATTGAA 59.010 33.333 17.74 17.74 41.42 2.69
2150 2441 5.466058 AGATTTGCGTTTCATTGCATTGAAA 59.534 32.000 25.34 25.34 41.92 2.69
2151 2442 5.475273 TTTGCGTTTCATTGCATTGAAAA 57.525 30.435 28.82 16.62 44.71 2.29
2152 2443 4.712191 TGCGTTTCATTGCATTGAAAAG 57.288 36.364 29.50 29.50 44.71 2.27
2153 2444 3.493877 TGCGTTTCATTGCATTGAAAAGG 59.506 39.130 31.90 26.38 44.71 3.11
2154 2445 3.740321 GCGTTTCATTGCATTGAAAAGGA 59.260 39.130 31.90 16.11 44.71 3.36
2155 2446 4.210955 GCGTTTCATTGCATTGAAAAGGAA 59.789 37.500 31.90 15.84 44.71 3.36
2156 2447 5.613142 GCGTTTCATTGCATTGAAAAGGAAG 60.613 40.000 31.90 22.66 44.71 3.46
2157 2448 5.107375 CGTTTCATTGCATTGAAAAGGAAGG 60.107 40.000 28.82 14.73 44.71 3.46
2158 2449 4.540359 TCATTGCATTGAAAAGGAAGGG 57.460 40.909 8.80 0.00 0.00 3.95
2159 2450 3.261390 TCATTGCATTGAAAAGGAAGGGG 59.739 43.478 8.80 0.00 0.00 4.79
2160 2451 2.397044 TGCATTGAAAAGGAAGGGGT 57.603 45.000 0.00 0.00 0.00 4.95
2161 2452 2.688477 TGCATTGAAAAGGAAGGGGTT 58.312 42.857 0.00 0.00 0.00 4.11
2162 2453 3.044894 TGCATTGAAAAGGAAGGGGTTT 58.955 40.909 0.00 0.00 0.00 3.27
2163 2454 3.070878 TGCATTGAAAAGGAAGGGGTTTC 59.929 43.478 0.00 0.00 34.93 2.78
2164 2455 3.070878 GCATTGAAAAGGAAGGGGTTTCA 59.929 43.478 0.00 0.00 39.00 2.69
2165 2456 4.800582 GCATTGAAAAGGAAGGGGTTTCAG 60.801 45.833 0.00 0.00 41.06 3.02
2166 2457 3.680777 TGAAAAGGAAGGGGTTTCAGT 57.319 42.857 0.00 0.00 36.58 3.41
2167 2458 3.989056 TGAAAAGGAAGGGGTTTCAGTT 58.011 40.909 0.00 0.00 36.58 3.16
2168 2459 5.132043 TGAAAAGGAAGGGGTTTCAGTTA 57.868 39.130 0.00 0.00 36.58 2.24
2169 2460 4.891168 TGAAAAGGAAGGGGTTTCAGTTAC 59.109 41.667 0.00 0.00 36.58 2.50
2170 2461 4.529716 AAAGGAAGGGGTTTCAGTTACA 57.470 40.909 0.00 0.00 37.54 2.41
2171 2462 4.741928 AAGGAAGGGGTTTCAGTTACAT 57.258 40.909 0.00 0.00 37.54 2.29
2172 2463 4.302559 AGGAAGGGGTTTCAGTTACATC 57.697 45.455 0.00 0.00 37.54 3.06
2173 2464 3.010250 AGGAAGGGGTTTCAGTTACATCC 59.990 47.826 0.00 0.00 37.54 3.51
2174 2465 3.010250 GGAAGGGGTTTCAGTTACATCCT 59.990 47.826 0.00 0.00 37.54 3.24
2175 2466 4.262617 GAAGGGGTTTCAGTTACATCCTC 58.737 47.826 0.00 0.00 35.78 3.71
2176 2467 2.576648 AGGGGTTTCAGTTACATCCTCC 59.423 50.000 0.00 0.00 0.00 4.30
2177 2468 2.576648 GGGGTTTCAGTTACATCCTCCT 59.423 50.000 0.00 0.00 0.00 3.69
2178 2469 3.778629 GGGGTTTCAGTTACATCCTCCTA 59.221 47.826 0.00 0.00 0.00 2.94
2179 2470 4.141688 GGGGTTTCAGTTACATCCTCCTAG 60.142 50.000 0.00 0.00 0.00 3.02
2180 2471 4.141688 GGGTTTCAGTTACATCCTCCTAGG 60.142 50.000 0.82 0.82 36.46 3.02
2196 2487 6.279513 CTCCTAGGAGGCAATTATACAGAG 57.720 45.833 28.68 0.01 38.51 3.35
2197 2488 5.716979 TCCTAGGAGGCAATTATACAGAGT 58.283 41.667 7.62 0.00 34.61 3.24
2198 2489 5.540337 TCCTAGGAGGCAATTATACAGAGTG 59.460 44.000 7.62 0.00 34.61 3.51
2199 2490 5.540337 CCTAGGAGGCAATTATACAGAGTGA 59.460 44.000 1.05 0.00 0.00 3.41
2200 2491 5.543507 AGGAGGCAATTATACAGAGTGAG 57.456 43.478 0.00 0.00 0.00 3.51
2201 2492 4.346418 AGGAGGCAATTATACAGAGTGAGG 59.654 45.833 0.00 0.00 0.00 3.86
2202 2493 4.503991 GGAGGCAATTATACAGAGTGAGGG 60.504 50.000 0.00 0.00 0.00 4.30
2203 2494 4.040755 AGGCAATTATACAGAGTGAGGGT 58.959 43.478 0.00 0.00 0.00 4.34
2204 2495 4.130118 GGCAATTATACAGAGTGAGGGTG 58.870 47.826 0.00 0.00 0.00 4.61
2205 2496 3.561725 GCAATTATACAGAGTGAGGGTGC 59.438 47.826 0.00 0.00 0.00 5.01
2206 2497 4.684485 GCAATTATACAGAGTGAGGGTGCT 60.684 45.833 0.00 0.00 0.00 4.40
2207 2498 4.679373 ATTATACAGAGTGAGGGTGCTG 57.321 45.455 0.00 0.00 34.65 4.41
2208 2499 0.539051 ATACAGAGTGAGGGTGCTGC 59.461 55.000 0.00 0.00 31.74 5.25
2209 2500 0.831711 TACAGAGTGAGGGTGCTGCA 60.832 55.000 0.00 0.00 31.74 4.41
2210 2501 1.071987 CAGAGTGAGGGTGCTGCAA 59.928 57.895 2.77 0.00 0.00 4.08
2211 2502 0.322277 CAGAGTGAGGGTGCTGCAAT 60.322 55.000 2.77 0.00 0.00 3.56
2212 2503 0.403271 AGAGTGAGGGTGCTGCAATT 59.597 50.000 2.77 0.00 0.00 2.32
2213 2504 1.630369 AGAGTGAGGGTGCTGCAATTA 59.370 47.619 2.77 0.00 0.00 1.40
2214 2505 2.040278 AGAGTGAGGGTGCTGCAATTAA 59.960 45.455 2.77 0.00 0.00 1.40
2215 2506 3.019564 GAGTGAGGGTGCTGCAATTAAT 58.980 45.455 2.77 0.00 0.00 1.40
2216 2507 2.756760 AGTGAGGGTGCTGCAATTAATG 59.243 45.455 2.77 0.00 0.00 1.90
2217 2508 2.493278 GTGAGGGTGCTGCAATTAATGT 59.507 45.455 2.77 0.00 0.00 2.71
2218 2509 3.694072 GTGAGGGTGCTGCAATTAATGTA 59.306 43.478 2.77 0.00 0.00 2.29
2219 2510 3.694072 TGAGGGTGCTGCAATTAATGTAC 59.306 43.478 2.77 0.00 0.00 2.90
2220 2511 3.694072 GAGGGTGCTGCAATTAATGTACA 59.306 43.478 2.77 0.00 0.00 2.90
2221 2512 4.280819 AGGGTGCTGCAATTAATGTACAT 58.719 39.130 2.77 1.41 0.00 2.29
2222 2513 4.339247 AGGGTGCTGCAATTAATGTACATC 59.661 41.667 9.23 0.00 0.00 3.06
2223 2514 4.499696 GGGTGCTGCAATTAATGTACATCC 60.500 45.833 9.23 1.09 0.00 3.51
2224 2515 4.499696 GGTGCTGCAATTAATGTACATCCC 60.500 45.833 9.23 0.00 0.00 3.85
2225 2516 4.097741 GTGCTGCAATTAATGTACATCCCA 59.902 41.667 9.23 0.00 0.00 4.37
2226 2517 4.338964 TGCTGCAATTAATGTACATCCCAG 59.661 41.667 9.23 10.04 0.00 4.45
2227 2518 4.261741 GCTGCAATTAATGTACATCCCAGG 60.262 45.833 9.23 0.86 0.00 4.45
2228 2519 4.865905 TGCAATTAATGTACATCCCAGGT 58.134 39.130 9.23 0.00 0.00 4.00
2229 2520 4.887071 TGCAATTAATGTACATCCCAGGTC 59.113 41.667 9.23 0.00 0.00 3.85
2230 2521 5.133221 GCAATTAATGTACATCCCAGGTCT 58.867 41.667 9.23 0.00 0.00 3.85
2231 2522 5.009010 GCAATTAATGTACATCCCAGGTCTG 59.991 44.000 9.23 0.88 0.00 3.51
2241 2532 1.918253 CCAGGTCTGGGGAATGAGG 59.082 63.158 9.08 0.00 46.81 3.86
2242 2533 1.639635 CCAGGTCTGGGGAATGAGGG 61.640 65.000 9.08 0.00 46.81 4.30
2243 2534 2.003548 AGGTCTGGGGAATGAGGGC 61.004 63.158 0.00 0.00 0.00 5.19
2244 2535 2.308722 GGTCTGGGGAATGAGGGCA 61.309 63.158 0.00 0.00 0.00 5.36
2245 2536 1.077429 GTCTGGGGAATGAGGGCAC 60.077 63.158 0.00 0.00 0.00 5.01
2246 2537 2.124570 CTGGGGAATGAGGGCACG 60.125 66.667 0.00 0.00 0.00 5.34
2247 2538 4.424711 TGGGGAATGAGGGCACGC 62.425 66.667 0.00 0.00 0.00 5.34
2248 2539 4.424711 GGGGAATGAGGGCACGCA 62.425 66.667 0.00 0.00 0.00 5.24
2249 2540 2.825836 GGGAATGAGGGCACGCAG 60.826 66.667 0.00 0.00 0.00 5.18
2250 2541 2.825836 GGAATGAGGGCACGCAGG 60.826 66.667 0.00 0.00 0.00 4.85
2251 2542 3.512516 GAATGAGGGCACGCAGGC 61.513 66.667 0.00 0.00 43.27 4.85
2280 2571 3.435186 GCTCTGGCCCAAAGCGTC 61.435 66.667 0.00 0.00 45.17 5.19
2281 2572 3.121030 CTCTGGCCCAAAGCGTCG 61.121 66.667 0.00 0.00 45.17 5.12
2287 2578 4.394712 CCCAAAGCGTCGCCTCCT 62.395 66.667 14.86 0.00 0.00 3.69
2288 2579 2.815647 CCAAAGCGTCGCCTCCTC 60.816 66.667 14.86 0.00 0.00 3.71
2289 2580 2.815647 CAAAGCGTCGCCTCCTCC 60.816 66.667 14.86 0.00 0.00 4.30
2290 2581 2.997897 AAAGCGTCGCCTCCTCCT 60.998 61.111 14.86 0.00 0.00 3.69
2291 2582 2.584391 AAAGCGTCGCCTCCTCCTT 61.584 57.895 14.86 0.00 0.00 3.36
2292 2583 2.788191 AAAGCGTCGCCTCCTCCTTG 62.788 60.000 14.86 0.00 0.00 3.61
2293 2584 3.760035 GCGTCGCCTCCTCCTTGA 61.760 66.667 5.75 0.00 0.00 3.02
2294 2585 3.082579 GCGTCGCCTCCTCCTTGAT 62.083 63.158 5.75 0.00 0.00 2.57
2295 2586 1.517832 CGTCGCCTCCTCCTTGATT 59.482 57.895 0.00 0.00 0.00 2.57
2296 2587 0.108138 CGTCGCCTCCTCCTTGATTT 60.108 55.000 0.00 0.00 0.00 2.17
2297 2588 1.676014 CGTCGCCTCCTCCTTGATTTT 60.676 52.381 0.00 0.00 0.00 1.82
2298 2589 2.418197 CGTCGCCTCCTCCTTGATTTTA 60.418 50.000 0.00 0.00 0.00 1.52
2299 2590 3.741388 CGTCGCCTCCTCCTTGATTTTAT 60.741 47.826 0.00 0.00 0.00 1.40
2300 2591 3.810386 GTCGCCTCCTCCTTGATTTTATC 59.190 47.826 0.00 0.00 0.00 1.75
2301 2592 3.142174 CGCCTCCTCCTTGATTTTATCC 58.858 50.000 0.00 0.00 0.00 2.59
2302 2593 3.433598 CGCCTCCTCCTTGATTTTATCCA 60.434 47.826 0.00 0.00 0.00 3.41
2303 2594 4.140536 GCCTCCTCCTTGATTTTATCCAG 58.859 47.826 0.00 0.00 0.00 3.86
2304 2595 4.140536 CCTCCTCCTTGATTTTATCCAGC 58.859 47.826 0.00 0.00 0.00 4.85
2305 2596 4.385643 CCTCCTCCTTGATTTTATCCAGCA 60.386 45.833 0.00 0.00 0.00 4.41
2306 2597 4.785301 TCCTCCTTGATTTTATCCAGCAG 58.215 43.478 0.00 0.00 0.00 4.24
2307 2598 3.317430 CCTCCTTGATTTTATCCAGCAGC 59.683 47.826 0.00 0.00 0.00 5.25
2308 2599 2.945008 TCCTTGATTTTATCCAGCAGCG 59.055 45.455 0.00 0.00 0.00 5.18
2309 2600 2.684881 CCTTGATTTTATCCAGCAGCGT 59.315 45.455 0.00 0.00 0.00 5.07
2310 2601 3.876914 CCTTGATTTTATCCAGCAGCGTA 59.123 43.478 0.00 0.00 0.00 4.42
2311 2602 4.024556 CCTTGATTTTATCCAGCAGCGTAG 60.025 45.833 0.00 0.00 0.00 3.51
2327 2618 1.067495 CGTAGCTATAGAAGGGCTGGC 60.067 57.143 3.21 0.00 37.50 4.85
2328 2619 2.252714 GTAGCTATAGAAGGGCTGGCT 58.747 52.381 3.21 0.00 37.50 4.75
2329 2620 1.347062 AGCTATAGAAGGGCTGGCTC 58.653 55.000 3.21 0.00 34.82 4.70
2330 2621 1.132881 AGCTATAGAAGGGCTGGCTCT 60.133 52.381 3.21 0.00 34.82 4.09
2331 2622 1.001860 GCTATAGAAGGGCTGGCTCTG 59.998 57.143 3.21 0.00 0.00 3.35
2332 2623 2.324541 CTATAGAAGGGCTGGCTCTGT 58.675 52.381 0.00 0.00 0.00 3.41
2333 2624 1.127343 ATAGAAGGGCTGGCTCTGTC 58.873 55.000 0.00 0.00 0.00 3.51
2334 2625 1.323271 TAGAAGGGCTGGCTCTGTCG 61.323 60.000 0.00 0.00 0.00 4.35
2335 2626 2.604686 AAGGGCTGGCTCTGTCGA 60.605 61.111 0.00 0.00 0.00 4.20
2336 2627 2.172483 GAAGGGCTGGCTCTGTCGAA 62.172 60.000 0.00 0.00 0.00 3.71
2337 2628 2.125350 GGGCTGGCTCTGTCGAAG 60.125 66.667 0.00 0.00 0.00 3.79
2338 2629 2.650116 GGGCTGGCTCTGTCGAAGA 61.650 63.158 0.00 0.00 0.00 2.87
2356 2647 2.507102 CGCAGTCGTTCCGATGCT 60.507 61.111 14.35 0.00 38.42 3.79
2357 2648 2.094659 CGCAGTCGTTCCGATGCTT 61.095 57.895 14.35 0.00 38.42 3.91
2358 2649 1.710339 GCAGTCGTTCCGATGCTTC 59.290 57.895 11.21 0.00 38.42 3.86
2359 2650 1.696832 GCAGTCGTTCCGATGCTTCC 61.697 60.000 11.21 0.00 38.42 3.46
2360 2651 0.389817 CAGTCGTTCCGATGCTTCCA 60.390 55.000 0.00 0.00 38.42 3.53
2361 2652 0.389948 AGTCGTTCCGATGCTTCCAC 60.390 55.000 0.00 0.00 38.42 4.02
2362 2653 0.669318 GTCGTTCCGATGCTTCCACA 60.669 55.000 0.00 0.00 38.42 4.17
2363 2654 0.389817 TCGTTCCGATGCTTCCACAG 60.390 55.000 0.00 0.00 0.00 3.66
2373 2664 3.963733 CTTCCACAGCATCCAAGGA 57.036 52.632 0.00 0.00 0.00 3.36
2374 2665 2.205022 CTTCCACAGCATCCAAGGAA 57.795 50.000 0.00 0.00 36.92 3.36
2375 2666 2.731572 CTTCCACAGCATCCAAGGAAT 58.268 47.619 0.00 0.00 37.69 3.01
2376 2667 2.133281 TCCACAGCATCCAAGGAATG 57.867 50.000 0.00 0.00 0.00 2.67
2377 2668 1.634973 TCCACAGCATCCAAGGAATGA 59.365 47.619 0.00 0.00 0.00 2.57
2378 2669 2.022195 CCACAGCATCCAAGGAATGAG 58.978 52.381 0.00 0.00 0.00 2.90
2379 2670 2.619849 CCACAGCATCCAAGGAATGAGT 60.620 50.000 0.00 0.00 0.00 3.41
2380 2671 3.370846 CCACAGCATCCAAGGAATGAGTA 60.371 47.826 0.00 0.00 0.00 2.59
2477 2768 1.907240 TTTGGGGATCCCTCCTTAGG 58.093 55.000 30.08 0.00 45.70 2.69
2523 2814 2.903798 CATGAGAGGCTCAAGAAGGTC 58.096 52.381 18.26 3.96 44.04 3.85
2702 2993 2.519771 AAATGCTGGATCAGAAGCCA 57.480 45.000 10.66 0.00 39.08 4.75
2836 3127 2.341257 CTATGGATGTGATGCTACCGC 58.659 52.381 0.00 0.00 0.00 5.68
2886 3186 1.734477 AGATGCTGTCGTCGTGTGC 60.734 57.895 0.00 0.00 33.49 4.57
2889 3189 4.064491 GCTGTCGTCGTGTGCTGC 62.064 66.667 0.00 0.00 0.00 5.25
2916 3341 2.408704 GCTAGTATATGCAACGCCGAAG 59.591 50.000 0.00 0.00 0.00 3.79
2948 3375 6.660949 AGAGTTTTTCTATGCTATGCACCTTT 59.339 34.615 0.00 0.00 43.04 3.11
3050 3478 6.110033 GGTGTGTTTGGTTCCAAAGTATTTT 58.890 36.000 16.05 0.00 35.03 1.82
3051 3479 6.596106 GGTGTGTTTGGTTCCAAAGTATTTTT 59.404 34.615 16.05 0.00 35.03 1.94
3052 3480 7.764901 GGTGTGTTTGGTTCCAAAGTATTTTTA 59.235 33.333 16.05 0.00 35.03 1.52
3053 3481 9.152595 GTGTGTTTGGTTCCAAAGTATTTTTAA 57.847 29.630 16.05 0.00 35.03 1.52
3054 3482 9.372369 TGTGTTTGGTTCCAAAGTATTTTTAAG 57.628 29.630 16.05 0.00 35.03 1.85
3055 3483 9.373603 GTGTTTGGTTCCAAAGTATTTTTAAGT 57.626 29.630 16.05 0.00 35.03 2.24
3117 3546 5.678955 ACTATGGTTTCAAGTACTCCCTC 57.321 43.478 0.00 0.00 0.00 4.30
3119 3548 1.621814 TGGTTTCAAGTACTCCCTCCG 59.378 52.381 0.00 0.00 0.00 4.63
3120 3549 1.066358 GGTTTCAAGTACTCCCTCCGG 60.066 57.143 0.00 0.00 0.00 5.14
3122 3551 1.553706 TTCAAGTACTCCCTCCGGTC 58.446 55.000 0.00 0.00 0.00 4.79
3135 3564 3.135895 CCCTCCGGTCCATAATAAGTGTT 59.864 47.826 0.00 0.00 0.00 3.32
3145 3574 8.962679 GGTCCATAATAAGTGTTGTAATTTGGA 58.037 33.333 0.00 0.00 0.00 3.53
3361 3864 0.691332 ACCGTCCTCTTCTTTTCCCC 59.309 55.000 0.00 0.00 0.00 4.81
3404 3913 6.371548 AGTCAAGATGAACAAATTTAGCGCTA 59.628 34.615 14.45 14.45 0.00 4.26
3408 3917 7.796958 AGATGAACAAATTTAGCGCTAAAAC 57.203 32.000 37.92 25.08 38.38 2.43
3416 3925 4.857509 TTTAGCGCTAAAACCACCAAAT 57.142 36.364 34.18 0.41 32.64 2.32
3421 3930 2.986479 CGCTAAAACCACCAAATTCAGC 59.014 45.455 0.00 0.00 0.00 4.26
3422 3931 3.551863 CGCTAAAACCACCAAATTCAGCA 60.552 43.478 0.00 0.00 0.00 4.41
3423 3932 4.376146 GCTAAAACCACCAAATTCAGCAA 58.624 39.130 0.00 0.00 0.00 3.91
3424 3933 4.211164 GCTAAAACCACCAAATTCAGCAAC 59.789 41.667 0.00 0.00 0.00 4.17
3425 3934 4.486125 AAAACCACCAAATTCAGCAACT 57.514 36.364 0.00 0.00 0.00 3.16
3426 3935 5.606348 AAAACCACCAAATTCAGCAACTA 57.394 34.783 0.00 0.00 0.00 2.24
3427 3936 5.606348 AAACCACCAAATTCAGCAACTAA 57.394 34.783 0.00 0.00 0.00 2.24
3428 3937 5.806654 AACCACCAAATTCAGCAACTAAT 57.193 34.783 0.00 0.00 0.00 1.73
3429 3938 5.806654 ACCACCAAATTCAGCAACTAATT 57.193 34.783 0.00 0.00 0.00 1.40
3430 3939 6.173427 ACCACCAAATTCAGCAACTAATTT 57.827 33.333 0.00 0.00 36.08 1.82
3431 3940 5.990996 ACCACCAAATTCAGCAACTAATTTG 59.009 36.000 11.65 11.65 45.89 2.32
3432 3941 5.990996 CCACCAAATTCAGCAACTAATTTGT 59.009 36.000 15.47 0.00 45.32 2.83
3433 3942 6.073657 CCACCAAATTCAGCAACTAATTTGTG 60.074 38.462 15.47 13.35 45.32 3.33
3434 3943 6.700960 CACCAAATTCAGCAACTAATTTGTGA 59.299 34.615 15.47 0.00 45.32 3.58
3435 3944 6.701400 ACCAAATTCAGCAACTAATTTGTGAC 59.299 34.615 15.47 0.00 45.32 3.67
3436 3945 6.700960 CCAAATTCAGCAACTAATTTGTGACA 59.299 34.615 15.47 0.00 45.32 3.58
3437 3946 7.385752 CCAAATTCAGCAACTAATTTGTGACAT 59.614 33.333 15.47 0.00 45.32 3.06
3438 3947 8.767085 CAAATTCAGCAACTAATTTGTGACATT 58.233 29.630 10.78 0.00 43.35 2.71
3439 3948 8.524870 AATTCAGCAACTAATTTGTGACATTC 57.475 30.769 0.00 0.00 37.54 2.67
3440 3949 6.631971 TCAGCAACTAATTTGTGACATTCA 57.368 33.333 0.00 0.00 37.54 2.57
3441 3950 7.036996 TCAGCAACTAATTTGTGACATTCAA 57.963 32.000 0.00 0.00 37.54 2.69
3442 3951 7.487484 TCAGCAACTAATTTGTGACATTCAAA 58.513 30.769 0.00 0.00 37.54 2.69
3443 3952 8.143193 TCAGCAACTAATTTGTGACATTCAAAT 58.857 29.630 0.00 0.00 44.14 2.32
3444 3953 8.430063 CAGCAACTAATTTGTGACATTCAAATC 58.570 33.333 4.91 0.00 42.31 2.17
3445 3954 8.143193 AGCAACTAATTTGTGACATTCAAATCA 58.857 29.630 4.91 0.00 42.31 2.57
3446 3955 8.430063 GCAACTAATTTGTGACATTCAAATCAG 58.570 33.333 4.91 3.30 42.31 2.90
3447 3956 9.681692 CAACTAATTTGTGACATTCAAATCAGA 57.318 29.630 8.11 0.00 42.31 3.27
3449 3958 9.903682 ACTAATTTGTGACATTCAAATCAGAAG 57.096 29.630 8.11 5.69 42.31 2.85
3450 3959 9.903682 CTAATTTGTGACATTCAAATCAGAAGT 57.096 29.630 4.91 0.00 42.31 3.01
3452 3961 7.990541 TTTGTGACATTCAAATCAGAAGTTG 57.009 32.000 0.00 0.00 30.67 3.16
3453 3962 6.940831 TGTGACATTCAAATCAGAAGTTGA 57.059 33.333 0.00 0.00 37.68 3.18
3454 3963 6.728200 TGTGACATTCAAATCAGAAGTTGAC 58.272 36.000 0.37 0.00 39.05 3.18
3455 3964 6.145535 GTGACATTCAAATCAGAAGTTGACC 58.854 40.000 0.37 0.00 39.05 4.02
3456 3965 5.827267 TGACATTCAAATCAGAAGTTGACCA 59.173 36.000 0.37 0.00 39.05 4.02
3457 3966 6.016860 TGACATTCAAATCAGAAGTTGACCAG 60.017 38.462 0.37 0.00 39.05 4.00
3458 3967 5.242393 ACATTCAAATCAGAAGTTGACCAGG 59.758 40.000 0.37 0.00 39.05 4.45
3459 3968 4.705110 TCAAATCAGAAGTTGACCAGGA 57.295 40.909 0.00 0.00 38.99 3.86
3460 3969 4.645535 TCAAATCAGAAGTTGACCAGGAG 58.354 43.478 0.00 0.00 38.99 3.69
3461 3970 4.103153 TCAAATCAGAAGTTGACCAGGAGT 59.897 41.667 0.00 0.00 38.99 3.85
3462 3971 3.971245 ATCAGAAGTTGACCAGGAGTC 57.029 47.619 0.00 0.00 46.51 3.36
3463 3972 2.964209 TCAGAAGTTGACCAGGAGTCT 58.036 47.619 0.00 0.00 46.46 3.24
3464 3973 4.114015 TCAGAAGTTGACCAGGAGTCTA 57.886 45.455 0.00 0.00 46.46 2.59
3467 3976 3.420397 GTTGACCAGGAGTCTACGC 57.580 57.895 0.00 0.00 46.46 4.42
3468 3977 0.889306 GTTGACCAGGAGTCTACGCT 59.111 55.000 0.00 0.00 46.46 5.07
3469 3978 1.272769 GTTGACCAGGAGTCTACGCTT 59.727 52.381 0.00 0.00 46.46 4.68
3470 3979 0.888619 TGACCAGGAGTCTACGCTTG 59.111 55.000 0.00 0.00 46.46 4.01
3471 3980 0.889306 GACCAGGAGTCTACGCTTGT 59.111 55.000 0.00 0.00 42.69 3.16
3472 3981 0.889306 ACCAGGAGTCTACGCTTGTC 59.111 55.000 0.00 0.00 0.00 3.18
3473 3982 0.888619 CCAGGAGTCTACGCTTGTCA 59.111 55.000 0.00 0.00 0.00 3.58
3474 3983 1.135257 CCAGGAGTCTACGCTTGTCAG 60.135 57.143 0.00 0.00 0.00 3.51
3475 3984 1.813178 CAGGAGTCTACGCTTGTCAGA 59.187 52.381 0.00 0.00 0.00 3.27
3476 3985 2.229062 CAGGAGTCTACGCTTGTCAGAA 59.771 50.000 0.00 0.00 0.00 3.02
3477 3986 2.490115 AGGAGTCTACGCTTGTCAGAAG 59.510 50.000 0.00 0.00 0.00 2.85
3478 3987 2.488545 GGAGTCTACGCTTGTCAGAAGA 59.511 50.000 0.00 0.00 0.00 2.87
3479 3988 3.426963 GGAGTCTACGCTTGTCAGAAGAG 60.427 52.174 0.00 0.00 0.00 2.85
3480 3989 2.094957 AGTCTACGCTTGTCAGAAGAGC 60.095 50.000 0.00 0.00 0.00 4.09
3481 3990 2.094957 GTCTACGCTTGTCAGAAGAGCT 60.095 50.000 0.00 0.00 34.33 4.09
3482 3991 3.127203 GTCTACGCTTGTCAGAAGAGCTA 59.873 47.826 0.00 0.00 34.33 3.32
3483 3992 3.756963 TCTACGCTTGTCAGAAGAGCTAA 59.243 43.478 0.00 0.00 34.33 3.09
3484 3993 3.601443 ACGCTTGTCAGAAGAGCTAAT 57.399 42.857 0.00 0.00 34.33 1.73
3485 3994 4.720649 ACGCTTGTCAGAAGAGCTAATA 57.279 40.909 0.00 0.00 34.33 0.98
3486 3995 4.425520 ACGCTTGTCAGAAGAGCTAATAC 58.574 43.478 0.00 0.00 34.33 1.89
3487 3996 3.483922 CGCTTGTCAGAAGAGCTAATACG 59.516 47.826 0.00 0.00 34.33 3.06
3488 3997 4.673441 GCTTGTCAGAAGAGCTAATACGA 58.327 43.478 0.00 0.00 33.72 3.43
3489 3998 4.501198 GCTTGTCAGAAGAGCTAATACGAC 59.499 45.833 0.00 0.00 33.72 4.34
3490 3999 4.634184 TGTCAGAAGAGCTAATACGACC 57.366 45.455 0.00 0.00 0.00 4.79
3491 4000 3.064958 TGTCAGAAGAGCTAATACGACCG 59.935 47.826 0.00 0.00 0.00 4.79
3492 4001 3.311871 GTCAGAAGAGCTAATACGACCGA 59.688 47.826 0.00 0.00 0.00 4.69
3493 4002 3.560481 TCAGAAGAGCTAATACGACCGAG 59.440 47.826 0.00 0.00 0.00 4.63
3494 4003 3.560481 CAGAAGAGCTAATACGACCGAGA 59.440 47.826 0.00 0.00 0.00 4.04
3495 4004 4.035324 CAGAAGAGCTAATACGACCGAGAA 59.965 45.833 0.00 0.00 0.00 2.87
3496 4005 4.822896 AGAAGAGCTAATACGACCGAGAAT 59.177 41.667 0.00 0.00 0.00 2.40
3497 4006 5.996513 AGAAGAGCTAATACGACCGAGAATA 59.003 40.000 0.00 0.00 0.00 1.75
3498 4007 5.610235 AGAGCTAATACGACCGAGAATAC 57.390 43.478 0.00 0.00 0.00 1.89
3499 4008 4.455190 AGAGCTAATACGACCGAGAATACC 59.545 45.833 0.00 0.00 0.00 2.73
3500 4009 4.139786 AGCTAATACGACCGAGAATACCA 58.860 43.478 0.00 0.00 0.00 3.25
3501 4010 4.023365 AGCTAATACGACCGAGAATACCAC 60.023 45.833 0.00 0.00 0.00 4.16
3502 4011 3.722728 AATACGACCGAGAATACCACC 57.277 47.619 0.00 0.00 0.00 4.61
3503 4012 1.392589 TACGACCGAGAATACCACCC 58.607 55.000 0.00 0.00 0.00 4.61
3504 4013 1.325476 ACGACCGAGAATACCACCCC 61.325 60.000 0.00 0.00 0.00 4.95
3505 4014 1.828081 GACCGAGAATACCACCCCC 59.172 63.158 0.00 0.00 0.00 5.40
3506 4015 2.024590 GACCGAGAATACCACCCCCG 62.025 65.000 0.00 0.00 0.00 5.73
3507 4016 2.062177 CCGAGAATACCACCCCCGT 61.062 63.158 0.00 0.00 0.00 5.28
3508 4017 1.440476 CGAGAATACCACCCCCGTC 59.560 63.158 0.00 0.00 0.00 4.79
3509 4018 1.828081 GAGAATACCACCCCCGTCC 59.172 63.158 0.00 0.00 0.00 4.79
3510 4019 1.691689 AGAATACCACCCCCGTCCC 60.692 63.158 0.00 0.00 0.00 4.46
3511 4020 2.693490 AATACCACCCCCGTCCCC 60.693 66.667 0.00 0.00 0.00 4.81
3512 4021 4.829581 ATACCACCCCCGTCCCCC 62.830 72.222 0.00 0.00 0.00 5.40
3556 4065 4.547367 GGAACCCAGATCCGGCGG 62.547 72.222 22.51 22.51 0.00 6.13
3576 4085 4.035102 GTGCACCCTCCCCACCTC 62.035 72.222 5.22 0.00 0.00 3.85
3656 4165 4.021925 GACTTGGCTGCCGGACCT 62.022 66.667 14.98 0.00 0.00 3.85
3657 4166 4.335647 ACTTGGCTGCCGGACCTG 62.336 66.667 14.98 3.26 0.00 4.00
3667 4176 4.504916 CGGACCTGCGCTCTCCAG 62.505 72.222 9.73 0.00 0.00 3.86
3671 4180 4.154347 CCTGCGCTCTCCAGGTCC 62.154 72.222 9.73 0.00 43.86 4.46
3672 4181 4.154347 CTGCGCTCTCCAGGTCCC 62.154 72.222 9.73 0.00 0.00 4.46
3682 4191 4.410400 CAGGTCCCCCGGCTTGTC 62.410 72.222 0.00 0.00 35.12 3.18
3683 4192 4.974438 AGGTCCCCCGGCTTGTCA 62.974 66.667 0.00 0.00 35.12 3.58
3684 4193 3.728373 GGTCCCCCGGCTTGTCAT 61.728 66.667 0.00 0.00 0.00 3.06
3685 4194 2.124695 GTCCCCCGGCTTGTCATC 60.125 66.667 0.00 0.00 0.00 2.92
3686 4195 3.781307 TCCCCCGGCTTGTCATCG 61.781 66.667 0.00 0.00 0.00 3.84
3687 4196 4.096003 CCCCCGGCTTGTCATCGT 62.096 66.667 0.00 0.00 0.00 3.73
3688 4197 2.511600 CCCCGGCTTGTCATCGTC 60.512 66.667 0.00 0.00 0.00 4.20
3689 4198 2.511600 CCCGGCTTGTCATCGTCC 60.512 66.667 0.00 0.00 0.00 4.79
3690 4199 2.579201 CCGGCTTGTCATCGTCCT 59.421 61.111 0.00 0.00 0.00 3.85
3691 4200 1.519455 CCGGCTTGTCATCGTCCTC 60.519 63.158 0.00 0.00 0.00 3.71
3692 4201 1.513158 CGGCTTGTCATCGTCCTCT 59.487 57.895 0.00 0.00 0.00 3.69
3693 4202 0.803768 CGGCTTGTCATCGTCCTCTG 60.804 60.000 0.00 0.00 0.00 3.35
3694 4203 1.086634 GGCTTGTCATCGTCCTCTGC 61.087 60.000 0.00 0.00 0.00 4.26
3695 4204 0.108424 GCTTGTCATCGTCCTCTGCT 60.108 55.000 0.00 0.00 0.00 4.24
3696 4205 1.638133 CTTGTCATCGTCCTCTGCTG 58.362 55.000 0.00 0.00 0.00 4.41
3697 4206 0.247460 TTGTCATCGTCCTCTGCTGG 59.753 55.000 0.00 0.00 0.00 4.85
3698 4207 1.520342 GTCATCGTCCTCTGCTGGC 60.520 63.158 0.00 0.00 0.00 4.85
3699 4208 2.584418 CATCGTCCTCTGCTGGCG 60.584 66.667 0.00 0.00 0.00 5.69
3700 4209 4.521062 ATCGTCCTCTGCTGGCGC 62.521 66.667 0.00 0.00 0.00 6.53
3719 4228 4.959596 GCTCCGGATCTGGCGCTC 62.960 72.222 25.33 6.83 36.79 5.03
3720 4229 4.292178 CTCCGGATCTGGCGCTCC 62.292 72.222 16.48 5.16 0.00 4.70
3724 4233 2.279784 GGATCTGGCGCTCCGAAG 60.280 66.667 7.64 0.00 34.14 3.79
3736 4245 3.488090 CCGAAGGCCGCGTTTCTC 61.488 66.667 17.67 0.00 46.14 2.87
3737 4246 2.432628 CGAAGGCCGCGTTTCTCT 60.433 61.111 4.92 0.00 0.00 3.10
3738 4247 2.445438 CGAAGGCCGCGTTTCTCTC 61.445 63.158 4.92 0.00 0.00 3.20
3739 4248 2.047179 AAGGCCGCGTTTCTCTCC 60.047 61.111 4.92 0.00 0.00 3.71
3740 4249 3.934391 AAGGCCGCGTTTCTCTCCG 62.934 63.158 4.92 0.00 0.00 4.63
3743 4252 4.436998 CCGCGTTTCTCTCCGGCT 62.437 66.667 4.92 0.00 33.77 5.52
3744 4253 2.432628 CGCGTTTCTCTCCGGCTT 60.433 61.111 0.00 0.00 0.00 4.35
3745 4254 2.445438 CGCGTTTCTCTCCGGCTTC 61.445 63.158 0.00 0.00 0.00 3.86
3746 4255 1.079750 GCGTTTCTCTCCGGCTTCT 60.080 57.895 0.00 0.00 0.00 2.85
3747 4256 0.670854 GCGTTTCTCTCCGGCTTCTT 60.671 55.000 0.00 0.00 0.00 2.52
3748 4257 1.351153 CGTTTCTCTCCGGCTTCTTC 58.649 55.000 0.00 0.00 0.00 2.87
3749 4258 1.351153 GTTTCTCTCCGGCTTCTTCG 58.649 55.000 0.00 0.00 0.00 3.79
3751 4260 0.898789 TTCTCTCCGGCTTCTTCGGT 60.899 55.000 0.00 0.00 46.82 4.69
3752 4261 0.898789 TCTCTCCGGCTTCTTCGGTT 60.899 55.000 0.00 0.00 46.82 4.44
3753 4262 0.458716 CTCTCCGGCTTCTTCGGTTC 60.459 60.000 0.00 0.00 46.82 3.62
3754 4263 1.183030 TCTCCGGCTTCTTCGGTTCA 61.183 55.000 0.00 0.00 46.82 3.18
3755 4264 1.005394 TCCGGCTTCTTCGGTTCAC 60.005 57.895 0.00 0.00 46.82 3.18
3756 4265 1.004918 CCGGCTTCTTCGGTTCACT 60.005 57.895 0.00 0.00 42.33 3.41
3757 4266 1.291877 CCGGCTTCTTCGGTTCACTG 61.292 60.000 0.00 0.00 42.33 3.66
3758 4267 1.291877 CGGCTTCTTCGGTTCACTGG 61.292 60.000 0.00 0.00 0.00 4.00
3759 4268 0.250338 GGCTTCTTCGGTTCACTGGT 60.250 55.000 0.00 0.00 0.00 4.00
3760 4269 1.149148 GCTTCTTCGGTTCACTGGTC 58.851 55.000 0.00 0.00 0.00 4.02
3761 4270 1.797025 CTTCTTCGGTTCACTGGTCC 58.203 55.000 0.00 0.00 0.00 4.46
3762 4271 1.344763 CTTCTTCGGTTCACTGGTCCT 59.655 52.381 0.00 0.00 0.00 3.85
3763 4272 0.966920 TCTTCGGTTCACTGGTCCTC 59.033 55.000 0.00 0.00 0.00 3.71
3764 4273 0.388649 CTTCGGTTCACTGGTCCTCG 60.389 60.000 0.00 0.00 0.00 4.63
3765 4274 2.430382 TTCGGTTCACTGGTCCTCGC 62.430 60.000 0.00 0.00 0.00 5.03
3766 4275 2.047179 GGTTCACTGGTCCTCGCC 60.047 66.667 0.00 0.00 0.00 5.54
3767 4276 2.432628 GTTCACTGGTCCTCGCCG 60.433 66.667 0.00 0.00 0.00 6.46
3768 4277 3.691342 TTCACTGGTCCTCGCCGG 61.691 66.667 0.00 0.00 40.67 6.13
3803 4312 4.711949 CAGCCCAAGACCTGCGCT 62.712 66.667 9.73 0.00 39.88 5.92
3804 4313 3.958860 AGCCCAAGACCTGCGCTT 61.959 61.111 9.73 0.00 35.57 4.68
3805 4314 2.985847 GCCCAAGACCTGCGCTTT 60.986 61.111 9.73 0.00 0.00 3.51
3806 4315 2.982744 GCCCAAGACCTGCGCTTTC 61.983 63.158 9.73 1.72 0.00 2.62
3807 4316 2.335712 CCCAAGACCTGCGCTTTCC 61.336 63.158 9.73 0.00 0.00 3.13
3808 4317 1.600636 CCAAGACCTGCGCTTTCCA 60.601 57.895 9.73 0.00 0.00 3.53
3809 4318 1.580845 CCAAGACCTGCGCTTTCCAG 61.581 60.000 9.73 0.00 0.00 3.86
3810 4319 0.886490 CAAGACCTGCGCTTTCCAGT 60.886 55.000 9.73 0.00 0.00 4.00
3811 4320 0.886490 AAGACCTGCGCTTTCCAGTG 60.886 55.000 9.73 0.00 0.00 3.66
3812 4321 1.598130 GACCTGCGCTTTCCAGTGT 60.598 57.895 9.73 0.00 32.54 3.55
3813 4322 1.569479 GACCTGCGCTTTCCAGTGTC 61.569 60.000 9.73 3.49 32.54 3.67
3814 4323 1.302033 CCTGCGCTTTCCAGTGTCT 60.302 57.895 9.73 0.00 32.54 3.41
3815 4324 0.886490 CCTGCGCTTTCCAGTGTCTT 60.886 55.000 9.73 0.00 32.54 3.01
3816 4325 0.514691 CTGCGCTTTCCAGTGTCTTC 59.485 55.000 9.73 0.00 32.54 2.87
3817 4326 1.221466 TGCGCTTTCCAGTGTCTTCG 61.221 55.000 9.73 0.00 32.54 3.79
3818 4327 1.901650 GCGCTTTCCAGTGTCTTCGG 61.902 60.000 0.00 0.00 32.54 4.30
3819 4328 1.869690 GCTTTCCAGTGTCTTCGGC 59.130 57.895 0.00 0.00 0.00 5.54
3820 4329 0.603975 GCTTTCCAGTGTCTTCGGCT 60.604 55.000 0.00 0.00 0.00 5.52
3821 4330 1.884235 CTTTCCAGTGTCTTCGGCTT 58.116 50.000 0.00 0.00 0.00 4.35
3822 4331 1.532868 CTTTCCAGTGTCTTCGGCTTG 59.467 52.381 0.00 0.00 0.00 4.01
3823 4332 0.884704 TTCCAGTGTCTTCGGCTTGC 60.885 55.000 0.00 0.00 0.00 4.01
3824 4333 2.328099 CCAGTGTCTTCGGCTTGCC 61.328 63.158 0.75 0.75 0.00 4.52
3825 4334 2.032681 AGTGTCTTCGGCTTGCCC 59.967 61.111 6.02 0.00 0.00 5.36
3836 4345 3.730761 CTTGCCCGCACACTGCTC 61.731 66.667 0.00 0.00 42.25 4.26
3837 4346 4.560743 TTGCCCGCACACTGCTCA 62.561 61.111 0.00 0.00 42.25 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.879892 GCAATTAGGCCTAGTCTTTGGAG 59.120 47.826 13.36 0.00 0.00 3.86
74 76 0.827507 GTGGTGGGTTGTGGAGCAAT 60.828 55.000 0.00 0.00 39.55 3.56
226 228 4.563168 CCCATGAAAACATTTTGCCTAGCA 60.563 41.667 0.00 0.00 36.47 3.49
273 276 1.754226 CTGGCTGAACTCTAGAGGGTC 59.246 57.143 23.50 18.96 0.00 4.46
610 642 5.650543 CCAACAATAGGTTTAGGTGCATTC 58.349 41.667 0.00 0.00 37.72 2.67
643 677 8.398878 TCCATAACCTACTTTTTGAACGAAAT 57.601 30.769 0.00 0.00 0.00 2.17
647 681 7.540745 CCAATTCCATAACCTACTTTTTGAACG 59.459 37.037 0.00 0.00 0.00 3.95
821 869 3.081061 TGCACATGGAATTGTGGTAGAC 58.919 45.455 6.70 0.00 45.69 2.59
868 940 7.716998 ACAGAGAAAATGTATATCCCATGTGAC 59.283 37.037 0.00 0.00 0.00 3.67
918 990 6.360618 TGGGATTGTAAAGGCAAACATTTTT 58.639 32.000 0.00 0.00 31.63 1.94
1774 2063 4.890581 AGACGAGTATATGGCAAGAGTCTT 59.109 41.667 0.00 0.00 33.27 3.01
1785 2074 8.330466 AGAATACCTCAGAAGACGAGTATATG 57.670 38.462 0.00 0.00 0.00 1.78
1982 2272 9.301897 GAAGCCAAGGATAAATAATCATAGGTT 57.698 33.333 0.00 0.00 36.20 3.50
2044 2334 6.255020 CGTGAACAGTAAACTCACACTTAAGT 59.745 38.462 1.12 1.12 39.56 2.24
2085 2376 2.593346 AAAGTCTCCGCAGCAGATAG 57.407 50.000 0.00 0.00 0.00 2.08
2107 2398 4.868450 TCTTCTGCGTTTTCTCGAAAAA 57.132 36.364 6.41 0.00 41.37 1.94
2108 2399 5.418310 AATCTTCTGCGTTTTCTCGAAAA 57.582 34.783 0.93 0.93 37.90 2.29
2109 2400 5.204833 CAAATCTTCTGCGTTTTCTCGAAA 58.795 37.500 0.00 0.00 0.00 3.46
2110 2401 4.772434 CAAATCTTCTGCGTTTTCTCGAA 58.228 39.130 0.00 0.00 0.00 3.71
2111 2402 3.363970 GCAAATCTTCTGCGTTTTCTCGA 60.364 43.478 0.00 0.00 0.00 4.04
2112 2403 2.904932 GCAAATCTTCTGCGTTTTCTCG 59.095 45.455 0.00 0.00 0.00 4.04
2121 2412 3.181537 GCAATGAAACGCAAATCTTCTGC 60.182 43.478 0.00 0.00 36.41 4.26
2122 2413 3.982701 TGCAATGAAACGCAAATCTTCTG 59.017 39.130 0.00 0.00 34.59 3.02
2123 2414 4.241590 TGCAATGAAACGCAAATCTTCT 57.758 36.364 0.00 0.00 34.59 2.85
2124 2415 5.118971 TCAATGCAATGAAACGCAAATCTTC 59.881 36.000 0.85 0.00 42.37 2.87
2125 2416 4.989797 TCAATGCAATGAAACGCAAATCTT 59.010 33.333 0.85 0.00 42.37 2.40
2126 2417 4.558178 TCAATGCAATGAAACGCAAATCT 58.442 34.783 0.85 0.00 42.37 2.40
2127 2418 4.907188 TCAATGCAATGAAACGCAAATC 57.093 36.364 0.85 0.00 42.37 2.17
2128 2419 5.670149 TTTCAATGCAATGAAACGCAAAT 57.330 30.435 22.92 0.00 42.68 2.32
2129 2420 5.475273 TTTTCAATGCAATGAAACGCAAA 57.525 30.435 25.73 11.15 46.06 3.68
2130 2421 4.025061 CCTTTTCAATGCAATGAAACGCAA 60.025 37.500 25.73 12.87 46.06 4.85
2131 2422 3.493877 CCTTTTCAATGCAATGAAACGCA 59.506 39.130 25.73 13.18 46.06 5.24
2132 2423 3.740321 TCCTTTTCAATGCAATGAAACGC 59.260 39.130 25.73 0.00 46.06 4.84
2133 2424 5.107375 CCTTCCTTTTCAATGCAATGAAACG 60.107 40.000 25.73 23.18 46.06 3.60
2134 2425 5.179929 CCCTTCCTTTTCAATGCAATGAAAC 59.820 40.000 25.73 0.00 46.06 2.78
2135 2426 5.307204 CCCTTCCTTTTCAATGCAATGAAA 58.693 37.500 22.92 22.92 45.07 2.69
2136 2427 4.262981 CCCCTTCCTTTTCAATGCAATGAA 60.263 41.667 13.20 13.20 37.53 2.57
2137 2428 3.261390 CCCCTTCCTTTTCAATGCAATGA 59.739 43.478 0.00 0.00 0.00 2.57
2138 2429 3.008266 ACCCCTTCCTTTTCAATGCAATG 59.992 43.478 0.00 0.00 0.00 2.82
2139 2430 3.250617 ACCCCTTCCTTTTCAATGCAAT 58.749 40.909 0.00 0.00 0.00 3.56
2140 2431 2.688477 ACCCCTTCCTTTTCAATGCAA 58.312 42.857 0.00 0.00 0.00 4.08
2141 2432 2.397044 ACCCCTTCCTTTTCAATGCA 57.603 45.000 0.00 0.00 0.00 3.96
2142 2433 3.070878 TGAAACCCCTTCCTTTTCAATGC 59.929 43.478 0.00 0.00 36.53 3.56
2143 2434 4.344968 ACTGAAACCCCTTCCTTTTCAATG 59.655 41.667 0.00 0.00 38.45 2.82
2144 2435 4.556697 ACTGAAACCCCTTCCTTTTCAAT 58.443 39.130 0.00 0.00 38.45 2.57
2145 2436 3.989056 ACTGAAACCCCTTCCTTTTCAA 58.011 40.909 0.00 0.00 38.45 2.69
2146 2437 3.680777 ACTGAAACCCCTTCCTTTTCA 57.319 42.857 0.00 0.00 37.00 2.69
2147 2438 4.891168 TGTAACTGAAACCCCTTCCTTTTC 59.109 41.667 0.00 0.00 32.53 2.29
2148 2439 4.874199 TGTAACTGAAACCCCTTCCTTTT 58.126 39.130 0.00 0.00 32.53 2.27
2149 2440 4.529716 TGTAACTGAAACCCCTTCCTTT 57.470 40.909 0.00 0.00 32.53 3.11
2150 2441 4.508584 GGATGTAACTGAAACCCCTTCCTT 60.509 45.833 0.00 0.00 32.53 3.36
2151 2442 3.010250 GGATGTAACTGAAACCCCTTCCT 59.990 47.826 0.00 0.00 32.53 3.36
2152 2443 3.010250 AGGATGTAACTGAAACCCCTTCC 59.990 47.826 0.00 0.00 32.53 3.46
2153 2444 4.262617 GAGGATGTAACTGAAACCCCTTC 58.737 47.826 0.00 0.00 34.31 3.46
2154 2445 3.010250 GGAGGATGTAACTGAAACCCCTT 59.990 47.826 0.00 0.00 0.00 3.95
2155 2446 2.576648 GGAGGATGTAACTGAAACCCCT 59.423 50.000 0.00 0.00 0.00 4.79
2156 2447 2.576648 AGGAGGATGTAACTGAAACCCC 59.423 50.000 0.00 0.00 0.00 4.95
2157 2448 4.141688 CCTAGGAGGATGTAACTGAAACCC 60.142 50.000 1.05 0.00 37.67 4.11
2158 2449 4.715297 TCCTAGGAGGATGTAACTGAAACC 59.285 45.833 7.62 0.00 40.06 3.27
2159 2450 5.908341 CTCCTAGGAGGATGTAACTGAAAC 58.092 45.833 28.68 0.00 44.81 2.78
2173 2464 5.777732 ACTCTGTATAATTGCCTCCTAGGAG 59.222 44.000 29.27 29.27 37.67 3.69
2174 2465 5.540337 CACTCTGTATAATTGCCTCCTAGGA 59.460 44.000 11.98 11.98 37.67 2.94
2175 2466 5.540337 TCACTCTGTATAATTGCCTCCTAGG 59.460 44.000 0.82 0.82 38.80 3.02
2176 2467 6.295011 CCTCACTCTGTATAATTGCCTCCTAG 60.295 46.154 0.00 0.00 0.00 3.02
2177 2468 5.540337 CCTCACTCTGTATAATTGCCTCCTA 59.460 44.000 0.00 0.00 0.00 2.94
2178 2469 4.346418 CCTCACTCTGTATAATTGCCTCCT 59.654 45.833 0.00 0.00 0.00 3.69
2179 2470 4.503991 CCCTCACTCTGTATAATTGCCTCC 60.504 50.000 0.00 0.00 0.00 4.30
2180 2471 4.101741 ACCCTCACTCTGTATAATTGCCTC 59.898 45.833 0.00 0.00 0.00 4.70
2181 2472 4.040755 ACCCTCACTCTGTATAATTGCCT 58.959 43.478 0.00 0.00 0.00 4.75
2182 2473 4.130118 CACCCTCACTCTGTATAATTGCC 58.870 47.826 0.00 0.00 0.00 4.52
2183 2474 3.561725 GCACCCTCACTCTGTATAATTGC 59.438 47.826 0.00 0.00 0.00 3.56
2184 2475 4.813161 CAGCACCCTCACTCTGTATAATTG 59.187 45.833 0.00 0.00 0.00 2.32
2185 2476 4.684485 GCAGCACCCTCACTCTGTATAATT 60.684 45.833 0.00 0.00 0.00 1.40
2186 2477 3.181461 GCAGCACCCTCACTCTGTATAAT 60.181 47.826 0.00 0.00 0.00 1.28
2187 2478 2.168521 GCAGCACCCTCACTCTGTATAA 59.831 50.000 0.00 0.00 0.00 0.98
2188 2479 1.757118 GCAGCACCCTCACTCTGTATA 59.243 52.381 0.00 0.00 0.00 1.47
2189 2480 0.539051 GCAGCACCCTCACTCTGTAT 59.461 55.000 0.00 0.00 0.00 2.29
2190 2481 0.831711 TGCAGCACCCTCACTCTGTA 60.832 55.000 0.00 0.00 0.00 2.74
2191 2482 1.699054 TTGCAGCACCCTCACTCTGT 61.699 55.000 0.00 0.00 0.00 3.41
2192 2483 0.322277 ATTGCAGCACCCTCACTCTG 60.322 55.000 0.00 0.00 0.00 3.35
2193 2484 0.403271 AATTGCAGCACCCTCACTCT 59.597 50.000 0.00 0.00 0.00 3.24
2194 2485 2.113860 TAATTGCAGCACCCTCACTC 57.886 50.000 0.00 0.00 0.00 3.51
2195 2486 2.584835 TTAATTGCAGCACCCTCACT 57.415 45.000 0.00 0.00 0.00 3.41
2196 2487 2.493278 ACATTAATTGCAGCACCCTCAC 59.507 45.455 0.00 0.00 0.00 3.51
2197 2488 2.806434 ACATTAATTGCAGCACCCTCA 58.194 42.857 0.00 0.00 0.00 3.86
2198 2489 3.694072 TGTACATTAATTGCAGCACCCTC 59.306 43.478 0.00 0.00 0.00 4.30
2199 2490 3.696045 TGTACATTAATTGCAGCACCCT 58.304 40.909 0.00 0.00 0.00 4.34
2200 2491 4.499696 GGATGTACATTAATTGCAGCACCC 60.500 45.833 10.30 0.00 0.00 4.61
2201 2492 4.499696 GGGATGTACATTAATTGCAGCACC 60.500 45.833 10.30 1.64 0.00 5.01
2202 2493 4.097741 TGGGATGTACATTAATTGCAGCAC 59.902 41.667 10.30 0.00 0.00 4.40
2203 2494 4.276642 TGGGATGTACATTAATTGCAGCA 58.723 39.130 10.30 0.00 0.00 4.41
2204 2495 4.261741 CCTGGGATGTACATTAATTGCAGC 60.262 45.833 10.30 0.00 0.00 5.25
2205 2496 4.889409 ACCTGGGATGTACATTAATTGCAG 59.111 41.667 10.30 0.00 0.00 4.41
2206 2497 4.865905 ACCTGGGATGTACATTAATTGCA 58.134 39.130 10.30 0.00 0.00 4.08
2207 2498 5.009010 CAGACCTGGGATGTACATTAATTGC 59.991 44.000 10.30 0.00 0.00 3.56
2208 2499 5.532406 CCAGACCTGGGATGTACATTAATTG 59.468 44.000 10.30 2.26 46.81 2.32
2209 2500 5.694995 CCAGACCTGGGATGTACATTAATT 58.305 41.667 10.30 0.00 46.81 1.40
2210 2501 5.310409 CCAGACCTGGGATGTACATTAAT 57.690 43.478 10.30 0.00 46.81 1.40
2211 2502 4.771114 CCAGACCTGGGATGTACATTAA 57.229 45.455 10.30 0.00 46.81 1.40
2224 2515 1.918253 CCCTCATTCCCCAGACCTG 59.082 63.158 0.00 0.00 0.00 4.00
2225 2516 2.003548 GCCCTCATTCCCCAGACCT 61.004 63.158 0.00 0.00 0.00 3.85
2226 2517 2.308722 TGCCCTCATTCCCCAGACC 61.309 63.158 0.00 0.00 0.00 3.85
2227 2518 1.077429 GTGCCCTCATTCCCCAGAC 60.077 63.158 0.00 0.00 0.00 3.51
2228 2519 2.669133 CGTGCCCTCATTCCCCAGA 61.669 63.158 0.00 0.00 0.00 3.86
2229 2520 2.124570 CGTGCCCTCATTCCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
2230 2521 4.424711 GCGTGCCCTCATTCCCCA 62.425 66.667 0.00 0.00 0.00 4.96
2231 2522 4.424711 TGCGTGCCCTCATTCCCC 62.425 66.667 0.00 0.00 0.00 4.81
2232 2523 2.825836 CTGCGTGCCCTCATTCCC 60.826 66.667 0.00 0.00 0.00 3.97
2233 2524 2.825836 CCTGCGTGCCCTCATTCC 60.826 66.667 0.00 0.00 0.00 3.01
2234 2525 3.512516 GCCTGCGTGCCCTCATTC 61.513 66.667 0.00 0.00 0.00 2.67
2263 2554 3.435186 GACGCTTTGGGCCAGAGC 61.435 66.667 33.02 33.02 38.08 4.09
2264 2555 3.121030 CGACGCTTTGGGCCAGAG 61.121 66.667 19.31 19.31 37.74 3.35
2270 2561 4.394712 AGGAGGCGACGCTTTGGG 62.395 66.667 20.77 0.00 0.00 4.12
2271 2562 2.815647 GAGGAGGCGACGCTTTGG 60.816 66.667 20.77 0.00 0.00 3.28
2272 2563 2.788191 AAGGAGGAGGCGACGCTTTG 62.788 60.000 20.77 0.00 0.00 2.77
2273 2564 2.584391 AAGGAGGAGGCGACGCTTT 61.584 57.895 20.77 8.51 0.00 3.51
2274 2565 2.997897 AAGGAGGAGGCGACGCTT 60.998 61.111 20.77 13.06 0.00 4.68
2275 2566 3.764466 CAAGGAGGAGGCGACGCT 61.764 66.667 20.77 5.59 0.00 5.07
2276 2567 2.579684 AATCAAGGAGGAGGCGACGC 62.580 60.000 12.43 12.43 0.00 5.19
2277 2568 0.108138 AAATCAAGGAGGAGGCGACG 60.108 55.000 0.00 0.00 0.00 5.12
2278 2569 2.115343 AAAATCAAGGAGGAGGCGAC 57.885 50.000 0.00 0.00 0.00 5.19
2279 2570 3.181454 GGATAAAATCAAGGAGGAGGCGA 60.181 47.826 0.00 0.00 0.00 5.54
2280 2571 3.142174 GGATAAAATCAAGGAGGAGGCG 58.858 50.000 0.00 0.00 0.00 5.52
2281 2572 4.140536 CTGGATAAAATCAAGGAGGAGGC 58.859 47.826 0.00 0.00 0.00 4.70
2282 2573 4.140536 GCTGGATAAAATCAAGGAGGAGG 58.859 47.826 0.00 0.00 30.67 4.30
2283 2574 4.785301 TGCTGGATAAAATCAAGGAGGAG 58.215 43.478 0.00 0.00 30.67 3.69
2284 2575 4.785301 CTGCTGGATAAAATCAAGGAGGA 58.215 43.478 5.20 0.00 43.02 3.71
2285 2576 3.317430 GCTGCTGGATAAAATCAAGGAGG 59.683 47.826 12.94 0.00 45.81 4.30
2287 2578 2.945008 CGCTGCTGGATAAAATCAAGGA 59.055 45.455 0.00 0.00 30.67 3.36
2288 2579 2.684881 ACGCTGCTGGATAAAATCAAGG 59.315 45.455 0.00 0.00 30.67 3.61
2289 2580 4.553547 GCTACGCTGCTGGATAAAATCAAG 60.554 45.833 0.00 0.00 33.27 3.02
2290 2581 3.312421 GCTACGCTGCTGGATAAAATCAA 59.688 43.478 0.00 0.00 0.00 2.57
2291 2582 2.872245 GCTACGCTGCTGGATAAAATCA 59.128 45.455 0.00 0.00 0.00 2.57
2292 2583 3.134458 AGCTACGCTGCTGGATAAAATC 58.866 45.455 1.81 0.00 42.33 2.17
2293 2584 3.199880 AGCTACGCTGCTGGATAAAAT 57.800 42.857 1.81 0.00 42.33 1.82
2294 2585 2.691409 AGCTACGCTGCTGGATAAAA 57.309 45.000 1.81 0.00 42.33 1.52
2295 2586 4.765339 TCTATAGCTACGCTGCTGGATAAA 59.235 41.667 12.22 0.00 43.87 1.40
2296 2587 4.332828 TCTATAGCTACGCTGCTGGATAA 58.667 43.478 12.22 0.00 43.87 1.75
2297 2588 3.951663 TCTATAGCTACGCTGCTGGATA 58.048 45.455 12.22 3.57 43.87 2.59
2298 2589 2.796557 TCTATAGCTACGCTGCTGGAT 58.203 47.619 12.22 2.66 43.87 3.41
2299 2590 2.271944 TCTATAGCTACGCTGCTGGA 57.728 50.000 12.22 5.89 43.87 3.86
2300 2591 2.352225 CCTTCTATAGCTACGCTGCTGG 60.352 54.545 12.22 1.28 43.87 4.85
2301 2592 2.352225 CCCTTCTATAGCTACGCTGCTG 60.352 54.545 12.22 0.00 43.87 4.41
2302 2593 1.889829 CCCTTCTATAGCTACGCTGCT 59.110 52.381 0.00 7.85 46.11 4.24
2303 2594 1.670380 GCCCTTCTATAGCTACGCTGC 60.670 57.143 0.00 0.00 40.10 5.25
2304 2595 1.889829 AGCCCTTCTATAGCTACGCTG 59.110 52.381 0.00 0.00 40.10 5.18
2305 2596 1.889829 CAGCCCTTCTATAGCTACGCT 59.110 52.381 0.00 0.00 43.41 5.07
2306 2597 1.067495 CCAGCCCTTCTATAGCTACGC 60.067 57.143 0.00 0.00 34.38 4.42
2307 2598 1.067495 GCCAGCCCTTCTATAGCTACG 60.067 57.143 0.00 0.00 34.38 3.51
2308 2599 2.232696 GAGCCAGCCCTTCTATAGCTAC 59.767 54.545 0.00 0.00 34.38 3.58
2309 2600 2.110899 AGAGCCAGCCCTTCTATAGCTA 59.889 50.000 0.00 0.00 34.38 3.32
2310 2601 1.132881 AGAGCCAGCCCTTCTATAGCT 60.133 52.381 0.00 0.00 37.32 3.32
2311 2602 1.001860 CAGAGCCAGCCCTTCTATAGC 59.998 57.143 0.00 0.00 0.00 2.97
2312 2603 2.298729 GACAGAGCCAGCCCTTCTATAG 59.701 54.545 0.00 0.00 0.00 1.31
2313 2604 2.320781 GACAGAGCCAGCCCTTCTATA 58.679 52.381 0.00 0.00 0.00 1.31
2314 2605 1.127343 GACAGAGCCAGCCCTTCTAT 58.873 55.000 0.00 0.00 0.00 1.98
2315 2606 1.323271 CGACAGAGCCAGCCCTTCTA 61.323 60.000 0.00 0.00 0.00 2.10
2316 2607 2.654079 CGACAGAGCCAGCCCTTCT 61.654 63.158 0.00 0.00 0.00 2.85
2317 2608 2.125350 CGACAGAGCCAGCCCTTC 60.125 66.667 0.00 0.00 0.00 3.46
2318 2609 2.177594 CTTCGACAGAGCCAGCCCTT 62.178 60.000 0.00 0.00 0.00 3.95
2319 2610 2.604686 TTCGACAGAGCCAGCCCT 60.605 61.111 0.00 0.00 0.00 5.19
2320 2611 2.125350 CTTCGACAGAGCCAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
2321 2612 1.446966 GTCTTCGACAGAGCCAGCC 60.447 63.158 0.00 0.00 32.09 4.85
2322 2613 1.803519 CGTCTTCGACAGAGCCAGC 60.804 63.158 0.00 0.00 39.71 4.85
2323 2614 1.803519 GCGTCTTCGACAGAGCCAG 60.804 63.158 0.00 0.00 39.71 4.85
2324 2615 2.258591 GCGTCTTCGACAGAGCCA 59.741 61.111 0.00 0.00 39.71 4.75
2325 2616 1.803519 CTGCGTCTTCGACAGAGCC 60.804 63.158 0.00 0.00 40.64 4.70
2326 2617 1.068287 GACTGCGTCTTCGACAGAGC 61.068 60.000 6.95 8.65 40.64 4.09
2327 2618 0.791238 CGACTGCGTCTTCGACAGAG 60.791 60.000 6.95 0.00 40.64 3.35
2328 2619 1.206831 CGACTGCGTCTTCGACAGA 59.793 57.895 6.95 0.68 40.64 3.41
2329 2620 3.742353 CGACTGCGTCTTCGACAG 58.258 61.111 7.03 0.00 42.31 3.51
2355 2646 2.205022 TTCCTTGGATGCTGTGGAAG 57.795 50.000 0.00 0.00 33.48 3.46
2356 2647 2.041485 TCATTCCTTGGATGCTGTGGAA 59.959 45.455 8.09 8.09 40.49 3.53
2357 2648 1.634973 TCATTCCTTGGATGCTGTGGA 59.365 47.619 0.00 0.00 0.00 4.02
2358 2649 2.022195 CTCATTCCTTGGATGCTGTGG 58.978 52.381 0.00 0.00 0.00 4.17
2359 2650 2.719739 ACTCATTCCTTGGATGCTGTG 58.280 47.619 0.00 0.00 0.00 3.66
2360 2651 3.118112 CCTACTCATTCCTTGGATGCTGT 60.118 47.826 0.00 0.00 0.00 4.40
2361 2652 3.135348 TCCTACTCATTCCTTGGATGCTG 59.865 47.826 0.00 0.00 0.00 4.41
2362 2653 3.387962 TCCTACTCATTCCTTGGATGCT 58.612 45.455 0.00 0.00 0.00 3.79
2363 2654 3.389329 TCTCCTACTCATTCCTTGGATGC 59.611 47.826 0.00 0.00 0.00 3.91
2364 2655 4.406972 TGTCTCCTACTCATTCCTTGGATG 59.593 45.833 0.00 0.00 0.00 3.51
2365 2656 4.624913 TGTCTCCTACTCATTCCTTGGAT 58.375 43.478 0.00 0.00 0.00 3.41
2366 2657 4.061131 TGTCTCCTACTCATTCCTTGGA 57.939 45.455 0.00 0.00 0.00 3.53
2367 2658 5.365021 AATGTCTCCTACTCATTCCTTGG 57.635 43.478 0.00 0.00 0.00 3.61
2368 2659 8.970859 ATTAAATGTCTCCTACTCATTCCTTG 57.029 34.615 0.00 0.00 32.39 3.61
2369 2660 9.981460 AAATTAAATGTCTCCTACTCATTCCTT 57.019 29.630 0.00 0.00 32.39 3.36
2370 2661 9.401058 CAAATTAAATGTCTCCTACTCATTCCT 57.599 33.333 0.00 0.00 32.39 3.36
2371 2662 9.396022 TCAAATTAAATGTCTCCTACTCATTCC 57.604 33.333 0.00 0.00 32.39 3.01
2373 2664 9.965902 AGTCAAATTAAATGTCTCCTACTCATT 57.034 29.630 0.00 0.00 33.94 2.57
2374 2665 9.388506 CAGTCAAATTAAATGTCTCCTACTCAT 57.611 33.333 0.00 0.00 0.00 2.90
2375 2666 7.824289 CCAGTCAAATTAAATGTCTCCTACTCA 59.176 37.037 0.00 0.00 0.00 3.41
2376 2667 7.201652 GCCAGTCAAATTAAATGTCTCCTACTC 60.202 40.741 0.00 0.00 0.00 2.59
2377 2668 6.599638 GCCAGTCAAATTAAATGTCTCCTACT 59.400 38.462 0.00 0.00 0.00 2.57
2378 2669 6.374333 TGCCAGTCAAATTAAATGTCTCCTAC 59.626 38.462 0.00 0.00 0.00 3.18
2379 2670 6.480763 TGCCAGTCAAATTAAATGTCTCCTA 58.519 36.000 0.00 0.00 0.00 2.94
2380 2671 5.324409 TGCCAGTCAAATTAAATGTCTCCT 58.676 37.500 0.00 0.00 0.00 3.69
2418 2709 1.208776 TCACTCTGATCCACCTGCATG 59.791 52.381 0.00 0.00 0.00 4.06
2477 2768 4.036734 TGTGTTGAAGAATCTGCCTCAAAC 59.963 41.667 0.00 1.52 0.00 2.93
2523 2814 1.948145 GAGCAGAAGCCAATGATCTGG 59.052 52.381 10.86 0.00 43.56 3.86
2702 2993 4.226427 TGTGCTTCCAAGATCATAGCTT 57.774 40.909 0.00 0.00 33.15 3.74
2807 3098 1.561076 TCACATCCATAGCTTGGCACT 59.439 47.619 9.35 0.00 46.01 4.40
2836 3127 8.984891 TTGCAAATCTAAACACTGGATAATTG 57.015 30.769 0.00 0.00 0.00 2.32
2886 3186 6.020281 GCGTTGCATATACTAGCTATAAGCAG 60.020 42.308 15.34 10.29 45.56 4.24
2889 3189 5.455849 CGGCGTTGCATATACTAGCTATAAG 59.544 44.000 0.00 0.00 0.00 1.73
2916 3341 5.948992 AGCATAGAAAAACTCTGACAACC 57.051 39.130 0.00 0.00 35.41 3.77
2948 3375 1.871039 GCAGTGTTAAGAGACGCCAAA 59.129 47.619 0.00 0.00 0.00 3.28
3117 3546 7.562454 AATTACAACACTTATTATGGACCGG 57.438 36.000 0.00 0.00 0.00 5.28
3119 3548 8.962679 TCCAAATTACAACACTTATTATGGACC 58.037 33.333 0.00 0.00 0.00 4.46
3156 3620 4.263506 CCAAACAGGTACTCCTTCCAATCT 60.264 45.833 0.00 0.00 43.07 2.40
3160 3624 2.696775 TCCAAACAGGTACTCCTTCCA 58.303 47.619 0.00 0.00 43.07 3.53
3161 3625 3.676093 CTTCCAAACAGGTACTCCTTCC 58.324 50.000 0.00 0.00 43.07 3.46
3164 3628 2.054799 TGCTTCCAAACAGGTACTCCT 58.945 47.619 0.00 0.00 46.37 3.69
3196 3660 9.899661 ACATACTATTGCAATACTGAGGTTTAA 57.100 29.630 15.21 0.00 0.00 1.52
3361 3864 3.265791 GACTAGTCAATCCAGCAACAGG 58.734 50.000 18.20 0.00 0.00 4.00
3391 3900 4.551388 TGGTGGTTTTAGCGCTAAATTTG 58.449 39.130 35.80 0.00 35.27 2.32
3404 3913 4.486125 AGTTGCTGAATTTGGTGGTTTT 57.514 36.364 0.00 0.00 0.00 2.43
3408 3917 6.470557 CAAATTAGTTGCTGAATTTGGTGG 57.529 37.500 10.74 0.00 44.10 4.61
3416 3925 7.036996 TGAATGTCACAAATTAGTTGCTGAA 57.963 32.000 0.00 0.00 41.31 3.02
3421 3930 9.681692 TCTGATTTGAATGTCACAAATTAGTTG 57.318 29.630 17.72 0.00 44.28 3.16
3423 3932 9.903682 CTTCTGATTTGAATGTCACAAATTAGT 57.096 29.630 17.72 0.00 44.28 2.24
3424 3933 9.903682 ACTTCTGATTTGAATGTCACAAATTAG 57.096 29.630 14.50 14.50 44.46 1.73
3426 3935 9.037737 CAACTTCTGATTTGAATGTCACAAATT 57.962 29.630 0.00 0.00 44.46 1.82
3427 3936 8.415553 TCAACTTCTGATTTGAATGTCACAAAT 58.584 29.630 0.00 0.00 46.22 2.32
3428 3937 7.701924 GTCAACTTCTGATTTGAATGTCACAAA 59.298 33.333 4.34 0.00 40.62 2.83
3429 3938 7.195646 GTCAACTTCTGATTTGAATGTCACAA 58.804 34.615 4.34 0.00 36.14 3.33
3430 3939 6.238731 GGTCAACTTCTGATTTGAATGTCACA 60.239 38.462 4.34 0.00 36.14 3.58
3431 3940 6.145535 GGTCAACTTCTGATTTGAATGTCAC 58.854 40.000 4.34 0.00 36.14 3.67
3432 3941 5.827267 TGGTCAACTTCTGATTTGAATGTCA 59.173 36.000 4.34 0.00 36.14 3.58
3433 3942 6.317789 TGGTCAACTTCTGATTTGAATGTC 57.682 37.500 4.34 0.00 36.14 3.06
3434 3943 5.242393 CCTGGTCAACTTCTGATTTGAATGT 59.758 40.000 4.34 0.00 36.14 2.71
3435 3944 5.474532 TCCTGGTCAACTTCTGATTTGAATG 59.525 40.000 4.34 0.19 36.14 2.67
3436 3945 5.634118 TCCTGGTCAACTTCTGATTTGAAT 58.366 37.500 4.34 0.00 36.14 2.57
3437 3946 5.047566 TCCTGGTCAACTTCTGATTTGAA 57.952 39.130 4.34 0.00 36.14 2.69
3438 3947 4.103153 ACTCCTGGTCAACTTCTGATTTGA 59.897 41.667 0.00 0.00 36.14 2.69
3439 3948 4.392940 ACTCCTGGTCAACTTCTGATTTG 58.607 43.478 0.00 0.00 36.14 2.32
3440 3949 4.349342 AGACTCCTGGTCAACTTCTGATTT 59.651 41.667 0.00 0.00 46.72 2.17
3441 3950 3.906846 AGACTCCTGGTCAACTTCTGATT 59.093 43.478 0.00 0.00 46.72 2.57
3442 3951 3.515562 AGACTCCTGGTCAACTTCTGAT 58.484 45.455 0.00 0.00 46.72 2.90
3443 3952 2.964209 AGACTCCTGGTCAACTTCTGA 58.036 47.619 0.00 0.00 46.72 3.27
3444 3953 3.366476 CGTAGACTCCTGGTCAACTTCTG 60.366 52.174 0.00 0.00 46.72 3.02
3445 3954 2.820787 CGTAGACTCCTGGTCAACTTCT 59.179 50.000 0.00 0.00 46.72 2.85
3446 3955 2.671632 GCGTAGACTCCTGGTCAACTTC 60.672 54.545 0.00 0.00 46.72 3.01
3447 3956 1.272769 GCGTAGACTCCTGGTCAACTT 59.727 52.381 0.00 0.00 46.72 2.66
3448 3957 0.889306 GCGTAGACTCCTGGTCAACT 59.111 55.000 0.00 0.00 46.72 3.16
3449 3958 0.889306 AGCGTAGACTCCTGGTCAAC 59.111 55.000 0.00 0.00 46.72 3.18
3450 3959 1.272490 CAAGCGTAGACTCCTGGTCAA 59.728 52.381 0.00 0.00 46.72 3.18
3451 3960 0.888619 CAAGCGTAGACTCCTGGTCA 59.111 55.000 0.00 0.00 46.72 4.02
3452 3961 0.889306 ACAAGCGTAGACTCCTGGTC 59.111 55.000 0.00 0.00 44.80 4.02
3453 3962 0.889306 GACAAGCGTAGACTCCTGGT 59.111 55.000 0.00 0.00 0.00 4.00
3454 3963 0.888619 TGACAAGCGTAGACTCCTGG 59.111 55.000 0.00 0.00 0.00 4.45
3455 3964 1.813178 TCTGACAAGCGTAGACTCCTG 59.187 52.381 0.00 0.00 0.00 3.86
3456 3965 2.201921 TCTGACAAGCGTAGACTCCT 57.798 50.000 0.00 0.00 0.00 3.69
3457 3966 2.488545 TCTTCTGACAAGCGTAGACTCC 59.511 50.000 0.00 0.00 0.00 3.85
3458 3967 3.753842 CTCTTCTGACAAGCGTAGACTC 58.246 50.000 0.00 0.00 0.00 3.36
3459 3968 2.094957 GCTCTTCTGACAAGCGTAGACT 60.095 50.000 0.00 0.00 0.00 3.24
3460 3969 2.094957 AGCTCTTCTGACAAGCGTAGAC 60.095 50.000 5.18 0.00 40.95 2.59
3461 3970 2.163509 AGCTCTTCTGACAAGCGTAGA 58.836 47.619 5.18 0.00 40.95 2.59
3462 3971 2.645730 AGCTCTTCTGACAAGCGTAG 57.354 50.000 5.18 0.00 40.95 3.51
3463 3972 4.720649 ATTAGCTCTTCTGACAAGCGTA 57.279 40.909 0.00 0.00 40.95 4.42
3464 3973 3.601443 ATTAGCTCTTCTGACAAGCGT 57.399 42.857 0.00 0.00 40.95 5.07
3465 3974 3.483922 CGTATTAGCTCTTCTGACAAGCG 59.516 47.826 0.00 0.00 40.95 4.68
3466 3975 4.501198 GTCGTATTAGCTCTTCTGACAAGC 59.499 45.833 0.00 2.96 36.27 4.01
3467 3976 5.038033 GGTCGTATTAGCTCTTCTGACAAG 58.962 45.833 0.00 0.00 0.00 3.16
3468 3977 4.438336 CGGTCGTATTAGCTCTTCTGACAA 60.438 45.833 0.00 0.00 0.00 3.18
3469 3978 3.064958 CGGTCGTATTAGCTCTTCTGACA 59.935 47.826 0.00 0.00 0.00 3.58
3470 3979 3.311871 TCGGTCGTATTAGCTCTTCTGAC 59.688 47.826 0.00 0.00 0.00 3.51
3471 3980 3.538591 TCGGTCGTATTAGCTCTTCTGA 58.461 45.455 0.00 0.00 0.00 3.27
3472 3981 3.560481 TCTCGGTCGTATTAGCTCTTCTG 59.440 47.826 0.00 0.00 0.00 3.02
3473 3982 3.806380 TCTCGGTCGTATTAGCTCTTCT 58.194 45.455 0.00 0.00 0.00 2.85
3474 3983 4.548991 TTCTCGGTCGTATTAGCTCTTC 57.451 45.455 0.00 0.00 0.00 2.87
3475 3984 5.048852 GGTATTCTCGGTCGTATTAGCTCTT 60.049 44.000 0.00 0.00 0.00 2.85
3476 3985 4.455190 GGTATTCTCGGTCGTATTAGCTCT 59.545 45.833 0.00 0.00 0.00 4.09
3477 3986 4.214971 TGGTATTCTCGGTCGTATTAGCTC 59.785 45.833 0.00 0.00 0.00 4.09
3478 3987 4.023365 GTGGTATTCTCGGTCGTATTAGCT 60.023 45.833 0.00 0.00 0.00 3.32
3479 3988 4.225208 GTGGTATTCTCGGTCGTATTAGC 58.775 47.826 0.00 0.00 0.00 3.09
3480 3989 4.320788 GGGTGGTATTCTCGGTCGTATTAG 60.321 50.000 0.00 0.00 0.00 1.73
3481 3990 3.569701 GGGTGGTATTCTCGGTCGTATTA 59.430 47.826 0.00 0.00 0.00 0.98
3482 3991 2.363359 GGGTGGTATTCTCGGTCGTATT 59.637 50.000 0.00 0.00 0.00 1.89
3483 3992 1.959282 GGGTGGTATTCTCGGTCGTAT 59.041 52.381 0.00 0.00 0.00 3.06
3484 3993 1.392589 GGGTGGTATTCTCGGTCGTA 58.607 55.000 0.00 0.00 0.00 3.43
3485 3994 1.325476 GGGGTGGTATTCTCGGTCGT 61.325 60.000 0.00 0.00 0.00 4.34
3486 3995 1.440476 GGGGTGGTATTCTCGGTCG 59.560 63.158 0.00 0.00 0.00 4.79
3487 3996 1.828081 GGGGGTGGTATTCTCGGTC 59.172 63.158 0.00 0.00 0.00 4.79
3488 3997 2.062177 CGGGGGTGGTATTCTCGGT 61.062 63.158 0.00 0.00 0.00 4.69
3489 3998 2.024590 GACGGGGGTGGTATTCTCGG 62.025 65.000 0.00 0.00 0.00 4.63
3490 3999 1.440476 GACGGGGGTGGTATTCTCG 59.560 63.158 0.00 0.00 0.00 4.04
3491 4000 1.693152 GGGACGGGGGTGGTATTCTC 61.693 65.000 0.00 0.00 0.00 2.87
3492 4001 1.691689 GGGACGGGGGTGGTATTCT 60.692 63.158 0.00 0.00 0.00 2.40
3493 4002 2.749584 GGGGACGGGGGTGGTATTC 61.750 68.421 0.00 0.00 0.00 1.75
3494 4003 2.693490 GGGGACGGGGGTGGTATT 60.693 66.667 0.00 0.00 0.00 1.89
3495 4004 4.829581 GGGGGACGGGGGTGGTAT 62.830 72.222 0.00 0.00 0.00 2.73
3537 4046 4.191015 GCCGGATCTGGGTTCCCC 62.191 72.222 22.38 0.06 45.71 4.81
3538 4047 4.547367 CGCCGGATCTGGGTTCCC 62.547 72.222 22.38 3.92 0.00 3.97
3539 4048 4.547367 CCGCCGGATCTGGGTTCC 62.547 72.222 22.38 4.30 0.00 3.62
3559 4068 4.035102 GAGGTGGGGAGGGTGCAC 62.035 72.222 8.80 8.80 0.00 4.57
3578 4087 4.388499 CCGTTCCTCCGGTGGTGG 62.388 72.222 21.58 17.20 43.07 4.61
3639 4148 4.021925 AGGTCCGGCAGCCAAGTC 62.022 66.667 13.30 0.00 0.00 3.01
3640 4149 4.335647 CAGGTCCGGCAGCCAAGT 62.336 66.667 13.30 0.00 0.00 3.16
3653 4162 3.386237 GACCTGGAGAGCGCAGGT 61.386 66.667 15.59 15.59 43.74 4.00
3654 4163 4.154347 GGACCTGGAGAGCGCAGG 62.154 72.222 11.47 10.05 38.02 4.85
3655 4164 4.154347 GGGACCTGGAGAGCGCAG 62.154 72.222 11.47 0.00 0.00 5.18
3668 4177 2.124695 GATGACAAGCCGGGGGAC 60.125 66.667 2.18 0.00 0.00 4.46
3669 4178 3.781307 CGATGACAAGCCGGGGGA 61.781 66.667 2.18 0.00 0.00 4.81
3670 4179 4.096003 ACGATGACAAGCCGGGGG 62.096 66.667 2.18 0.00 0.00 5.40
3671 4180 2.511600 GACGATGACAAGCCGGGG 60.512 66.667 2.18 0.00 0.00 5.73
3672 4181 2.511600 GGACGATGACAAGCCGGG 60.512 66.667 2.18 0.00 0.00 5.73
3673 4182 1.519455 GAGGACGATGACAAGCCGG 60.519 63.158 0.00 0.00 0.00 6.13
3674 4183 0.803768 CAGAGGACGATGACAAGCCG 60.804 60.000 0.00 0.00 0.00 5.52
3675 4184 1.086634 GCAGAGGACGATGACAAGCC 61.087 60.000 0.00 0.00 0.00 4.35
3676 4185 0.108424 AGCAGAGGACGATGACAAGC 60.108 55.000 0.00 0.00 0.00 4.01
3677 4186 1.638133 CAGCAGAGGACGATGACAAG 58.362 55.000 0.00 0.00 0.00 3.16
3678 4187 0.247460 CCAGCAGAGGACGATGACAA 59.753 55.000 0.00 0.00 0.00 3.18
3679 4188 1.893062 CCAGCAGAGGACGATGACA 59.107 57.895 0.00 0.00 0.00 3.58
3680 4189 1.520342 GCCAGCAGAGGACGATGAC 60.520 63.158 0.00 0.00 0.00 3.06
3681 4190 2.895680 GCCAGCAGAGGACGATGA 59.104 61.111 0.00 0.00 0.00 2.92
3682 4191 2.584418 CGCCAGCAGAGGACGATG 60.584 66.667 0.00 0.00 32.44 3.84
3683 4192 4.521062 GCGCCAGCAGAGGACGAT 62.521 66.667 0.00 0.00 44.35 3.73
3703 4212 4.292178 GGAGCGCCAGATCCGGAG 62.292 72.222 11.34 0.00 43.66 4.63
3708 4217 2.279784 CCTTCGGAGCGCCAGATC 60.280 66.667 7.44 0.00 0.00 2.75
3709 4218 4.537433 GCCTTCGGAGCGCCAGAT 62.537 66.667 7.44 0.00 0.00 2.90
3717 4226 3.488090 GAAACGCGGCCTTCGGAG 61.488 66.667 12.47 0.00 39.69 4.63
3718 4227 3.927163 GAGAAACGCGGCCTTCGGA 62.927 63.158 12.47 0.00 39.69 4.55
3719 4228 3.488090 GAGAAACGCGGCCTTCGG 61.488 66.667 12.47 0.00 39.69 4.30
3720 4229 2.432628 AGAGAAACGCGGCCTTCG 60.433 61.111 12.47 11.95 42.76 3.79
3721 4230 2.101233 GGAGAGAAACGCGGCCTTC 61.101 63.158 12.47 10.40 0.00 3.46
3722 4231 2.047179 GGAGAGAAACGCGGCCTT 60.047 61.111 12.47 0.00 0.00 4.35
3723 4232 4.436998 CGGAGAGAAACGCGGCCT 62.437 66.667 12.47 3.60 0.00 5.19
3726 4235 3.934391 AAGCCGGAGAGAAACGCGG 62.934 63.158 12.47 0.00 0.00 6.46
3727 4236 2.432628 AAGCCGGAGAGAAACGCG 60.433 61.111 5.05 3.53 0.00 6.01
3728 4237 0.670854 AAGAAGCCGGAGAGAAACGC 60.671 55.000 5.05 0.00 0.00 4.84
3729 4238 1.351153 GAAGAAGCCGGAGAGAAACG 58.649 55.000 5.05 0.00 0.00 3.60
3730 4239 1.351153 CGAAGAAGCCGGAGAGAAAC 58.649 55.000 5.05 0.00 0.00 2.78
3731 4240 3.814577 CGAAGAAGCCGGAGAGAAA 57.185 52.632 5.05 0.00 0.00 2.52
3739 4248 1.291877 CCAGTGAACCGAAGAAGCCG 61.292 60.000 0.00 0.00 0.00 5.52
3740 4249 0.250338 ACCAGTGAACCGAAGAAGCC 60.250 55.000 0.00 0.00 0.00 4.35
3741 4250 1.149148 GACCAGTGAACCGAAGAAGC 58.851 55.000 0.00 0.00 0.00 3.86
3742 4251 1.344763 AGGACCAGTGAACCGAAGAAG 59.655 52.381 0.00 0.00 0.00 2.85
3743 4252 1.343465 GAGGACCAGTGAACCGAAGAA 59.657 52.381 0.00 0.00 0.00 2.52
3744 4253 0.966920 GAGGACCAGTGAACCGAAGA 59.033 55.000 0.00 0.00 0.00 2.87
3745 4254 0.388649 CGAGGACCAGTGAACCGAAG 60.389 60.000 0.00 0.00 0.00 3.79
3746 4255 1.663739 CGAGGACCAGTGAACCGAA 59.336 57.895 0.00 0.00 0.00 4.30
3747 4256 2.927580 GCGAGGACCAGTGAACCGA 61.928 63.158 0.00 0.00 0.00 4.69
3748 4257 2.432628 GCGAGGACCAGTGAACCG 60.433 66.667 0.00 0.00 0.00 4.44
3749 4258 2.047179 GGCGAGGACCAGTGAACC 60.047 66.667 0.00 0.00 0.00 3.62
3750 4259 2.432628 CGGCGAGGACCAGTGAAC 60.433 66.667 0.00 0.00 0.00 3.18
3751 4260 3.691342 CCGGCGAGGACCAGTGAA 61.691 66.667 9.30 0.00 45.00 3.18
3752 4261 4.988716 ACCGGCGAGGACCAGTGA 62.989 66.667 9.30 0.00 45.00 3.41
3753 4262 4.742201 CACCGGCGAGGACCAGTG 62.742 72.222 9.30 1.47 45.00 3.66
3789 4298 2.335712 GGAAAGCGCAGGTCTTGGG 61.336 63.158 11.47 0.00 42.32 4.12
3790 4299 1.580845 CTGGAAAGCGCAGGTCTTGG 61.581 60.000 11.47 0.00 37.06 3.61
3791 4300 0.886490 ACTGGAAAGCGCAGGTCTTG 60.886 55.000 11.47 3.56 37.06 3.02
3792 4301 0.886490 CACTGGAAAGCGCAGGTCTT 60.886 55.000 11.47 0.00 37.06 3.01
3793 4302 1.302033 CACTGGAAAGCGCAGGTCT 60.302 57.895 11.47 0.00 37.06 3.85
3794 4303 1.569479 GACACTGGAAAGCGCAGGTC 61.569 60.000 11.47 2.90 37.06 3.85
3795 4304 1.598130 GACACTGGAAAGCGCAGGT 60.598 57.895 11.47 0.00 44.60 4.00
3796 4305 0.886490 AAGACACTGGAAAGCGCAGG 60.886 55.000 11.47 0.00 0.00 4.85
3797 4306 0.514691 GAAGACACTGGAAAGCGCAG 59.485 55.000 11.47 0.00 0.00 5.18
3798 4307 1.221466 CGAAGACACTGGAAAGCGCA 61.221 55.000 11.47 0.00 0.00 6.09
3799 4308 1.493311 CGAAGACACTGGAAAGCGC 59.507 57.895 0.00 0.00 0.00 5.92
3800 4309 1.901650 GCCGAAGACACTGGAAAGCG 61.902 60.000 0.00 0.00 0.00 4.68
3801 4310 0.603975 AGCCGAAGACACTGGAAAGC 60.604 55.000 0.00 0.00 0.00 3.51
3802 4311 1.532868 CAAGCCGAAGACACTGGAAAG 59.467 52.381 0.00 0.00 0.00 2.62
3803 4312 1.593196 CAAGCCGAAGACACTGGAAA 58.407 50.000 0.00 0.00 0.00 3.13
3804 4313 0.884704 GCAAGCCGAAGACACTGGAA 60.885 55.000 0.00 0.00 0.00 3.53
3805 4314 1.301716 GCAAGCCGAAGACACTGGA 60.302 57.895 0.00 0.00 0.00 3.86
3806 4315 2.328099 GGCAAGCCGAAGACACTGG 61.328 63.158 0.00 0.00 0.00 4.00
3807 4316 2.328099 GGGCAAGCCGAAGACACTG 61.328 63.158 4.80 0.00 36.85 3.66
3808 4317 2.032681 GGGCAAGCCGAAGACACT 59.967 61.111 4.80 0.00 36.85 3.55
3809 4318 3.423154 CGGGCAAGCCGAAGACAC 61.423 66.667 4.80 0.00 36.85 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.