>input_sequence_42270
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---------------------------------ATGCCATTGTGTGATTCTGCCCACTCTGCCTGTGTCTCTCGCACATT
TCTACGTTCTTGGAGATGCCACCCCAAGCTTATCTTCACTGAGGAAACACTAGGCTTGAAACGGACGGA-----------
-------AGCAAGGGAT---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCACTAGCAGAGTTAATCAAATTCTG
AAAAATCACTCAGACACCGGTGTGAAGATACTCGAGTTTGTATTCGATGATCGTAACAATGTCAACACATGTCATCTAAA
TAGTTGGCTCCAGAAAGCTGTCACGCCAGGGATTGAAAAAATCACCCTTTTTCTGCCTTGGCGATATAGGGAAGA-GTAC
AACTTCCCATGCTCAATTTTACTTGATGGGCGTGGAAACTCAATTTGGTATCTTGACCTCACCAATTGTGCCTTCCATCC
CATGGTTGGATTTGATTGCTTGAGAAGCCTGACAAAGCTGCGTCTCTATGGAGTTTGTATCACGGGGGATGAGTTAGGGC
ATCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTGCAAGTCTGGTGTTGCATGGAGCTAATCTGCTCGACGATACCATTC
TGGCTGCAGCGGCTTAGTTGTTTGACTGTGTCAGAGTGCGATATGCTGCGAGTGATAGAGAGCACAGCTCCAAACCTCAC
CACTTTAGACTTCTTTGGTGAACCAGTACAACTCGTGCTTAGAGAATCATCAAAGGTCAAACACTTGAAGGTGGGGTATT
CATATACGCCCAATGCTGTAAGTTATGCTATCACTAAGCTACCTTCTATTGCACCACATCTTAAGACTCTTGCCATATAC
TCGTCTTCTGAGGTATTCTCTGAAGCTTCA-AATTATTATATTCCAGTGTTTATGACTTGTAAGAAGGAATGTGATTAAT
TCGAGATATCTTTGTGCAGACGGTTAATACCCCAATGGTAGCTGACAAATTCCTTGCCATAAAGCACTTGAATATTCACC
TTGGTGAGGATTATGATGATGCTGTTACCCCAACCTATGATTATTTATCCTTGGCTTCGTTTCTGGATGCTTGTCCTGTC
CTGGAGAGTTTCAACTTAAGTGTGAGTTTACTGTTCACGCTTCAAAGGTGTCTA-CTATCTGCTGCGGAGACTTTTTTTT
TTCGAGAAAACGCAGAAGATTTGCGTTTCATTGCATTGAAAAGGAAGGGGTTTCAGTTACATCCTCCTAGGAGGCAATTA
TACAGAGTGAGGGTGCTGCAATTAATGTACATCCCAGGTCTGGGGAATGAGGGCACGCAGGCCCAACGCGCCGGCTCTGG
CCCAAAGCGTCGCCTCCTCCTTGATTTTATCCAGCAGCGTAGCTATAGAAGGGCTGGCTCTGTCGAAGACGCAGTCGTTC
CGATGCTTCCACAGCATCCAAGGAATGAGTAGGAGACATTTAATTTGACTGGCAATAATATTTGATGCCATGCAGGTGGA
TCAGAGTGACATGCAGCATGATTCGGTTTTTGGGGATCCCTCCTTAGGTTTGAGGCAGATTCTTCAACACAAGCATGAGA
GGCTCAAGAAGGTCCAGATCATTGGCTTCTGCTCTGCAAAGAGCATGGTTGAGCTAACATGTGATATTCTCAAGAATGCA
ACATCACTTGAGAGCCTCACACTGGACTGTATATATGGTGCGGGTACGGGGGCGATCAGTGATTCTGTTAGGTGTGGTCC
CTCAAGATCCGGTAAATGCTGGATCAGAAGCCAAGCTATGATCTTGGAAGCACATAAAGCAGTCGGTGCCATCAAAAGAT
ACATCCTGGAGAGAGTTCCCCCTGCAGTCAAGTTAAATGTTGGGGGGCCTTGTAGCCAGTGCCAAGCTATGGATGTGATG
CTACCGCAATTATCCAGTGTTTAG--------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>chr3D_1_TraesCS3D01G358100
AGCACATCCTTGTGCGGTGTGTCTTTGCCCTGCAGGTCTGGTCTTGTATTC-TCCAAAGACTAGGCCTAATTGCTATTGC
TCCACAACCCACCACTGGCTGGTTCTCAAGCTGGTGGTGCCAAGTTCTCAATCAAGTTCCCAAAGAACTCCGAAAAGGGC
TTAACTGCCTCATTATCTTGGTAGCGTGGGACATATGGAAGCATCGGAACAATTGCGTTTTCAGTGATGCTAGGCAAAAT
GTTTTCATGG-GTTGCTGACAGTTGCTAGTGAATGGACCCTCTAGAGTTCAGCCAGACATTTGGCACTTCGGCAGCTTTT
ATGTGGGCCGCTTACCTTGGACAATTAGGCTCGTCCTTTGTCTTAGTTTGGTA-GTTTTGTTTCCTGTGGTGTGAGTTCT
TAGCTTGTTCCTTA------------GA------------GGTGTGTTTGGGTTGAGGAAGTTTCTATCTTCAGCCTTCT
ACATATTTCTTTCT---TAATGAAGTGTTACGCAGCCCTCCTGCGTGTTTGAGAAAAATATATTTATGATTGCTTTGCAT
GTCAACGTTATTTCTGTCTTTTTGCTACTGGGTTTATTTGTTCCAAGCTATT-GCACAAAGCACCATTCCTTGACTGTAA
CGAATGCACCTAAACC--TATTGTTGGCTACTCTAGATTTCGTTCAAAAAGTAGGTTATGGAATTGGTTGAAAATAAAGG
TTATG---GGGAAA--AATCCAAAATTATCGATTTCTTAGTGATA-------GCAGTCGGTTATATAAATTACAATGAAG
CGTTCTTTAGGAAAGCCACCTACATTACTCTTATA--GAGAAGGAACCTCTCTGCACAAGCTGAACTTGTCTACCACAAT
------------------------TCCATGTGCATCACATTTTGTACAAGCGTGAACAGGTCACATGGGATATACATTTT
CTCTGTATGGTTCCTTAATTTTTTGTAAAAAAAA-TGTTTGCCTTTACAATCCCAGTGATCAACTATTTTT-ACATGCCT
GTGCAGGATATCTGGTGCCTTGTACATTCCCTAATGCCATTGTGTGATTCTGCCCACTCTGCCTGTGTCTCTCGCACATT
TCTACGTTCTTGGAGATGCCACCCCAAGCTTATCTTCACTGAGGAAACACTAGGCTTGAAACGGACGGA-----------
-------AGCAAGGGAT---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCACTAGCAGAGTTAATCAAATTCTG
AAAAATCACTCAGACACCGGTGTGAAGATACTCGAGTTTGTATTCGATGATCGTAACAATGTCAACACATGTCATCTAAA
TAGTTGGCTCCAGAAAGCTGTCACGCCAGGGATTGAAAAAATCACCCTTTTTCTGCCTTGGCGATATAGGGAAGA-GTAC
AACTTCCCATGCTCAATTTTACTTGATGGGCGTGGAAACTCAATTTGGTATCTTGACCTCACCAATTGTGCCTTCCATCC
CATGGTTGGATTTGATTGCTTGAGAAGCCTGACAAAGCTGCGTCTCTATGGAGTTTGTATCACGGGGGATGAGTTAGGGC
ATCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTGCAAGTCTGGTGTTGCATGGAGCTAATCTGCTCGACGATACCATTC
TGGCTGCAGCGGCTTAGTTGTTTGACTGTGTCAGAGTGCGATATGCTGCGAGTGATAGAGAGCACAGCTCCAAACCTCAC
CACTTTAGACTTCTTTGGTGAACCAGTACAACTCGTGCTTAGAGAATCATCAAAGGTCAAACACTTGAAGGTGGGGTATT
CATATACGCCCAATGCTGTAAGTTATGCTATCACTAAGCTACCTTCTATTGCACCACATCTTAAGACTCTTGCCATATAC
TCGTCTTCTGAGGTATTCTCTGAAGCTTCA-AATTATTATATTCCAGTGTTTATGACTTGTAAGAAGGAATGTGATTAAT
TCGAGATATCTTTGTGCAGACGGTTAATACCCCAATGGTAGCTGACAAATTCCTTGCCATAAAGCACTTGAATATTCACC
TTGGTGAGGATTATGATGATGCTGTTACCCCAACCTATGATTATTTATCCTTGGCTTCGTTTCTGGATGCTTGTCCTGTC
CTGGAGAGTTTCAACTTAAGTGTGAGTTTACTGTTCACGCTTCAAAGGTGTCTA-CTATCTGCTGCGGAGACTTTTTTTT
TTCGAGAAAACGCAGAAGATTTGCGTTTCATTGCATTGAAAAGGAAGGGGTTTCAGTTACATCCTCCTAGGAGGCAATTA
TACAGAGTGAGGGTGCTGCAATTAATGTACATCCCAGGTCTGGGGAATGAGGGCACGCAGGCCCAACGCGCCGGCTCTGG
CCCAAAGCGTCGCCTCCTCCTTGATTTTATCCAGCAGCGTAGCTATAGAAGGGCTGGCTCTGTCGAAGACGCAGTCGTTC
CGATGCTTCCACAGCATCCAAGGAATGAGTAGGAGACATTTAATTTGACTGGCAATAATATTTGATGCCATGCAGGTGGA
TCAGAGTGACATGCAGCATGATTCGGTTTTTGGGGATCCCTCCTTAGGTTTGAGGCAGATTCTTCAACACAAGCATGAGA
GGCTCAAGAAGGTCCAGATCATTGGCTTCTGCTCTGCAAAGAGCATGGTTGAGCTAACATGTGATATTCTCAAGAATGCA
ACATCACTTGAGAGCCTCACACTGGACTGTATATATGGTGCGGGTACGGGGGCGATCAGTGATTCTGTTAGGTGTGGTCC
CTCAAGATCCGGTAAATGCTGGATCAGAAGCCAAGCTATGATCTTGGAAGCACATAAAGCAGTCGGTGCCATCAAAAGAT
ACATCCTGGAGAGAGTTCCCCCTGCAGTCAAGTTAAATGTTGGGGGGCCTTGTAGCCAGTGCCAAGCTATGGATGTGATG
CTACCGCAATTATCCAGTGTTTAGATTTGCAATGTTGCAGATGCTGTCGTCGT---------GTGCTGCTTATAGCT---
--------------------------------------------------------------------------------
-----------------------------------------AGTATATGCAACGCC-GAAGGT--TGTCAGAGTTTTTCT
ATGCTATGCACCTTTTTGGCGTCTCTTAACACTGCAAGTTGATTGTTACTCCACCTAAATTAGAGCTA-AGGCTAGCTAT
GCAAATACATTTTGGTGTGTTTGGTTCCAAAGTATTTTTAAGTAGAGATTAAGTATTCTAAGAATACCAAAGTATCTTGA
AAA-CTATGGTTTCAAGTACTCCCTCCGGTCCATAATAAGTGTTGTAATTTGGAACT-----------------------
------------TTATTATAGATTGGAAGGAGTACCTGTTTGGAAGCAATGTTTTTTTTT--TAAACCTCAGTATTGCAA
TAGTATG-------------------------------------TTTTTTTTTGCCGATCACAATAAAATACTGTATCTA
TGAAAACACCAGTTTTTCAAAGTATTGTTGAAACGATGATGGTGTGTTTGGCAATAATAAAAGTACATAGCACTGTATTT
GGTCACCGTCCTCTTCTTTTCCCCCT--GTT----GCTGGATTGACTAGTCAAGATGAACAAATTTAGCGCTAAAACCAC
CAAATTCAGCAACTAATTTGTGACATTCAAATCAGAAGTTGACCAGGAGTCTACGCTTGTCAGAAGAGCTAATACGACCG
AGAATACCACCCCCGTCCCCCGCGTCGCCCTCCCTGGCGGCGACGGGGGAACCCAGATCCGGCGGCCGTGCACCCTCCCC
ACCTCGCCACCACCGGAGGAACGGCCGGCGAAGCCCGCGCCGGCTCCCGGGATGGTGGCGGCGGGGCGACTTGGCTGCCG
GACCTGCGCTCTCCAGGTCCCCCGGCTTGTCATCGTCCTCTGCTGGCGCGGCTCCGGATCTGGCGCTCCGAAGGCCGCGT
TTCTCTCCGGCTTCTTCGGTTCACTGGTCCTCGCCGGTGCTGCTCCGGCCCCGGCAGCCCAAGACCTGCGCTTTCCAGTG
TCTTCGGCTTGCCCGCACACTGCTCACGCGGCTCGGTCCCCG
>chr3B_1
AGCACATCCTTGTGCGGTGTGTCTTTGCCCTGCAGGTCTGGTCTTGTATTT-TCCAAAGACTAGGCCTAATTGCTGTTGC
TCCACAACCCACCACTGGCCGGTTCTCAAGCTGGTGGTGCCAAGTTCTCAATCAAGTTCCCAAAGAACTCATAAGAGGGC
TTAACTACCTCATTATCTTGGTGGCGTGGGAAATATGGAAGCATCAGAACAATTGCGTTTTCAATGGCTCTAGGCAAAAT
GTTTTCATGGTGTTGCTGACAGTTGCTAATGAATGCACCCTCCGGTGTTCAGCCAGAGCTTTGGCGCTTCGGCAGCTTTT
ATGTGGGCTGCTTACCTTGGACAATTAGGCTTTTCCTTTGTCTGATTTTTGGTCGTTTTGTTTCCTGTGGTGTGAGTTCT
TAGCTTGTTCCTTAGAGGTGTGTCTTGA------------GGTGTGTTTGGGTTGAGGAAGTTTCTGTCTTTAGCCGTGT
ACATATTTCTTTCTTCTTAATGAAGTGATATGCAGCCCTCCTGCGTGTTTGAGAAAAATATATTTATGATTGCTTTGCAT
GTCAACGTTATTTCTGTTTTTTTGCAACTGGGTTTATTTGTTGCAAGCTATTTGCACAAAGCACCATTCCTTGTCTGTAA
CAAATGCACCTAAACC--TATTGTCGGCTACTCTAGGTTTTGTTCAAAAAATAGGTTATGGAATTGGTTGAAAATAAAGG
TTATG---GGGAAAAAAATCCAAAATTATCGATTTCTTAGTGATA-------GCAGTCGGTTATATAAATTACAATGAAG
CCTTCTTTAGGAAAGCCACCTACATTACTCTTATA--GAGAAGGAACCTCTCTGCACAAGCTGAACTTATCTACCACAAC
TACATTTCAATGCAGTTATCTTACTCCATGTGCATCACATTTTGTACAAGCGTGAACAGATCACATGGGGTATACATTTT
CTCTGTGTAGTTCCTTAATTTTTTGTAAA-AAAA-TGTTTGCCTTTACAATCCCAGTGATCAAATATTTTTTCCATGCCT
GTGCAGGATATCTGGTGCCTTGTACATTCACTAATGCCATTGTGTGATTCTGCCCACTCTGCCTGTGTCTCTCGCACATT
TCTACGTTCTTGGAGATGCCACCCCAAGCTTATCTTCACTGAGGAAACACTAGGCTTGAAACAGACGGA-----------
-------AGCAAGGGAT---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCACTAGCAGAGTTAATCAAATTCTG
AAAAATCACTCAGACACCGGTGTGAAGATACTCAAGTTTGTAATCGATGATCATAACAATGTCAACACATGTCATCTAAA
TAGTTGGCTCCAGAAAGCTGTCACACCAGGGATTGAAAAAATCACCCTTTTTCTGCCTTGGCGCAGTAGGGAAGA-GTAC
AACTTCCCATGCTCAATTTTACTTGATGGGCGTGGAAACTCAATTTGGTATCTTGACCTCACCAATTGTGCCTTCCGTCC
CATGGTTGGATTTGATTGCTTGAGAAGCCTGACAAAGCTGCGTCTCTATGGAGTTTGTATCACGGGGGATGAGTTAGGGC
GTCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTGCAAGTCTGGTGTTGCATGGAGCTAATCTGCTTGACGATACCATTC
TGGCTGCAGCGGCTTAGTTGTTTGACTGTGTCAGAGTGCGATATGCTGCGAGTGATAGAGAGCACAGCTCCAAACCTCAC
CACTTTAGACTTCTTTGGTGAACCAGTACAACTCGTGCTTAGAGAATCATCAAAGGTAAAAGACTTGAAGGTGGGGTATT
CATATAAGCCCAATGCTGTAAGTTATGCTATCACTAAGCTACCTTCTATTGCGCCACATCTTCAGACTCTTGCTATATAC
TCGTCTTCTGAGGTATTCTCTGAAGCTTCA-AATTATTATATTCCAGTGTTTATGACTTGTAAGAAGGAATGTGATTAAT
TCGAGATATCTTTGTGCAGAAGGTTAATACCCCAATGGTAGCTGACAAATTCCTTGCCATAAAGCACTTGAATATTCACC
TTGGTGAGGATGATGATGATGCTGTTACCCCGACCTATGATTATTTATCCTTGGCTTCGTTTCTGGATGCTTGTCCTGTC
CTGGAGAGTTTCACCTTAAGTGTGAGTTTACTGTTCACGCTTCAAAGGTGTCTA-GTATCTGCTGC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GGAGACATTTAATTTGACTGGCAATAATATTTGATGCTATGCAGGTGGA
TCAGAGTGACATGCAGCATGATTCGGTTTTTGGGGATCCCTCCTTAGCTTTGAGGCAGATTCTTCCACACAAGCATGAGA
GGCTCAAGAAGGTACAGATCATTGGCTTCTGCTCTGCAAAGAGCATGGTTGAGCTAACATGTGATATTCTCAAGAATGCA
ACATCACTTGAGAGCCTCACGCTGGACTGTATATATGGTGCGGGTACAGGGGCGATTAGTGATTCTGTTAGGTGTGGTCC
CTCAAGATCCGGTAAATGCTGGATCAGAAGCCGAGCTATGATCTTGGAAGCACATAAAGCAGTTGGTGCCATCAAAAGAT
ACATCCTGGAGAGAGTTCCCCCTGCAGTCAAGTTAAATGTTGGGGGGCCTTGTAGCCGGTGTCAAGCTATGGATGTGATG
CTACCGTAATTATCCAATGTTTAGGTTTGCAATATTGCAGATGCTGCCGTCGTCTTTGTTCAGTGTTGTTTATAGCTAGT
ACTCCCTCCGTCCGAAAATACTTGTCATCAAAATGGACAAAAAGGATGTATCTAGAATTAAAATACATCTAGATATATCC
ACTTTTATTCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTATATGCAACGCC-GAATGTGTTGTCAGAGTTTTTCT
ATGCTATGCACCTTATTCGCGTCTCTTAACACTGCAAGTTGATTGTTACTCTACCTAGATTAGAGCTAAAGGCTTGCTAT
GCAAATACATTTTGGTGTGTTTGGTTCCAAAGTATTT-----------TTAAGTATTCCAAGAATACCAAAGTATCTTGA
AAAACTATGGTTTCAAGTACTCCCTACCTTAG----------------------------------------TTAGTTCC
AAATTACGAGACTTATTATGGATCAGAGGGAGTACCTGTTTGGAAGCAATGTTTTTCTTCCATAAACCTCAGTATTGCAA
TAGTATCATTTTTTTCCCTATAAACCTCAGTGTTGCAATAGTATTTTTTTTTTGCCGATCACAATAAAATACCGTATCTA
TGAAAACACCAGTTTTTCAAAGTATTATTGAAACGATGATCTTGTGTTTGGCAGTAACAAAAGTACATAGCACTGTATTT
CGTCACCGTCCTCTTCTTTTCCATCT--GTTTGTTGCTGGAATTTTCTAGTCAAATGAATAAATTTAG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>chr3A_1
AGCACATCCTTGTGCGGTGTGACTTTGCCCTGCAGGTCTGGTCTTGTATTTTTCCAAAGACTAGGCCTAATTGCTGTTGC
TCCACAACCCACCACTGGCCGGTTCTCAAGTTGGTGGTGCCAAGTTCTCAATCAAGTTCCCAAAGAACTCCGAAAAGGGC
TTAAGTACCTCATTATCTTGGTGGCTTGGGAAATATGGAAGCATCAGAACAATTGCATTTTCAATGGCGCTAGGCAAAAT
GTTTTCATGGTGTTGCTGACAGTTGCTAATGAATGCACCCTCTGGTGTTCAGCTAGAGCTTTGGCGCTTCGGCAGCTTTT
GTGTGGGCTACTTACCTTGGACAATTAGGCTTGTCCTTTGTCTGAGTTTTGGTCATTTTGTTTCCTGTGGTGTGAGTTCT
TAGCTTGTTCCTTA------------GAGGTGTGTCTTGGGGTGTGTTTGGGTTGAGGAAGTTTCTGTCTTCAGCCTTGT
ACATATTTCTTTCTTCTTATTGAAGTGATATGCAGCCCTCCTGCGTGTTTGAGAAAAATATCTTTATGATTGCTTTGCAT
GTCAACGTTATTTCTGTCTTTTTGCTACTGGGTTTATTTGTTGCAAGCTATT-GCACAAAGCACCATTCCTTGACTGTAA
CAAATGTACATAAACCTATATTATTGGCTACTCTAGGTTTTGTTAAAAAAAA----TATGGAATTGGTTGAAAAAAAGGT
TAAGGGA-----------------------AATTTCTTAGTGATA-------GCAGTCGATTATATAAATTACAATGAAG
TGTTCTGTAGGAAAGCCGCCTACATTACTCTTATATAGAGAAGGAACCTCTATGCACAAGCTGAACTAATCTACCACAAT
TACATTTCAATGCACTTATCTTACTCCATGTGCATCACAT----TACAAGCGTGAACAGATCACATGGGATATACATTTT
CTCTGTATGGTTTCTTAATTTTTTGTAAA-AAAAGTGTTTGCCTTTACAATCCCAGTGATCAACTATTTTTTCCATGTCT
GTGCAGGATATCTGGTGCCTTGTACATTCCCTAATGCCATTGTGTGATTCTGCCCACTCTGCCTGTGTGTCTCGCACATT
TCTACGTTCTTGGAGATGCCACCCCAAGCTTATCTTCAGTGAGGAAGCACTAGGTTTGAAACAGAAGGAAGGACGAAATA
TCAATATAGCATGGGATTTCACTAGCAGAGTTAATCAAAGGGCAGCCCGGTGCATGTAGCTCCCGCTTGCGCAGGGTCCG
GGGAAGGGTCCGACCACTTTGGGTCTATAGTACGCAGCCTTTCCTACATTTCTGTAAGAGGCTGTTTCCAGGACTTGAAC
CCGTGACCTCTTGGTCACAAGGCAGCAGCTTTACCACTGCGCCAAGGCTCCCCTTCACTAGCAGAGTTAATCAAATTCTG
AAAAATCACTCAGACACCAGTGTGAAGATACTCGAGTTTGTAATCAATAATCGTCACAATGTCAACACATGTCAGCTAAA
TAGTTGGCTCCAGAAAGCTGTCACACCAGGGATTGAAAAAATCACCCTTTTTCTGCCTATGGAATA-AGGGAAGA-GTAC
AACTTCCCGTGCTCAGTTTTATTTGATGGGCGTGGAAACTCAATTTGGTATCTTAACCTCACCAATTGCGCCTTCCGTCC
CGTGGCTGGATTTGATTGCTTGAGAAGCCTGACAAAGCTGCGTCTTTATGGAGTTTGTATCAGGGGGGATGAGTTAGGGC
ATCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTGCAAGTCTGGTGTTGCATGGAGCTAATCTGCTTGACGATACCATTC
TGGCTGCAGCGGCTTAGTTGTTTGACTGTGTCAGAGTGCGATATGCTGCGAGTGATAGAGAGCACAGCTCCAAACCTCAC
CACTTTAGACTTCTTTGGTGAACCAGTACAACTTGTGCTTAGAGAATCATCAAAGGTAAAAAACTTGCAAGTGGGGTATT
CATATAAGCCCAATGCTATAAGTTATGCTATCACTAAGCTACCTTCTATTGTGCCACATCTTTAGACTCTTACTATATAC
TCGTCTTCTGAGGTATTCTCTGAAGCTTCA-AATTATTATATTCCAGTGTTTCTGACTTGTAAGAAGGAATATGATTAAT
TCGAGATATCTTTGTGCAGACGGTTAATACCCCAATGGTAGCTGACAAATTCCTTGACATAAAGCACTTGAATATTCACC
TTGGTGAGGATTATGATGACGCTGTTACCCCGACCTATGATTATTTATCCTTGGCTTTGTTTCTGGATGCTTGTCCTGTC
CTGGAGAGTTTCACCTTAATTGTGAGTTTACTGTTCACGCTTCAAAGGTGTCTA-GTATCTGCTGCGGAGAC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATTTAATTTGGCTGGCAATAATATTTGATGCTACGCAGGTAGA
TCAGAGTGATATGCAGCATGATTCGGTTTTTGGGAATCCCTCCTTGTTTTTGAGGCAGATTCTTCAACACAAGCATGAGA
GGCTCAAGAAGGTGCAGATCATTGGCTTCTGCTCTGCAAAGAGCATGGTTGAGCTAACATGTGATATTCTCAAGAATGCA
ACATCACTTGAGAGCCTCACTCTGGACTGTGTATTTGGTGCGGGTACGGGGGCCATTAGTGATTCTGTTAGGTGTGGTCC
CTCAAAATCCGATAAATGCTGGATCAGAAGCCGAACTATGATCTTGGAAGCACATAAAGCACTCGGTGCCATCAAAACGT
ACATCCTGGAGAGAGTTCCCCCTGCAGTCAAGTTAAATGTTGGGGGGCCTTGTAGCCGGTGCCAAGCTATGGATGTGATG
CTTTAG-------------------TTTTTAATGTTGCAGATGTTGTCATCGTCATTGTTCAGTATTGTTTATAGCT---
--------------------------------------------------------------------------------
-----------------------------------------AGTATATGCAACGCC-AAATGTGTTGTCAAAGTTTTTCT
ATGCTATGCACCTTATTGGCGTCTCTTAACACTGCAAGTTGATTGTTACTCCACCTAAATTAGAGCCC-AGGCCAGCTAT
GCAAATACATTTTGGCGTGTTTGGTTCTAAAGTATTT-----------TTAAGTATTCCAAGAATACCAAAGTATCTTGG
AAACCTATTGTTTCAAGTACT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>chr3A_1
AGCACATCCTTGTGCGGTGTGCCTTTGCCCTGCAGGTCTGGTCTTGTATTTTG-CAAAGACTAGGCCTAATTGCTGTTGC
TCCACAACCCACCACTGGCTGGTTCTCAAGCTGGTGGTGCCAAGTTCTCAATCAAGTTCCCAAAGAATTCCAAAAAGGGC
TTAACTGCCTCATTATCTTGGTAGCGTGGGACATATGGAAGCATCGGAACAATTGCGTTTGCAGTGACGCTAGGCAAAAT
GTTTTCATGG-GTTGCTGACAGTTGCTAGTGAATGCACCCTCTAGTGTTCAGCCAGACATTTGGCACTTCGGCAGCTTTT
ATGTGGGCCGCTTACCTTGGACAATTAGGCTCGTCCTTTGTCTTAGTTTGGTA-GTTTTGTTTCCTGTGGTGTGAGTTCT
TAGCTTGTTCCTTA------------GA------------GGTGTGTTTGGGTTGAGGAAGTTTCTATCTTCAGCCTTCT
ACATATTTCTTTCTT---AATGAAGTGTTACACAGCCCTCCTGCGTGTTTGAGAGAAATATATTTATGATTGCTTTGCAT
GTCAACGCTATTTCTGTCTTTTTGCTACTGGGTTTATTTGTTCCAAGCTATC-GCACAAAGCACCATTCCTTGACTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GGTTCCTTAATTTTTTGTAAA-AAAAATGTTTGCCTTTACAATCCCAGTGATCAACTATTTTT-CCATGCCT
GTGCAGGATATCTGGTGCCTTGTACATTCCCTAATGCCATTGTGTGATTCTGCCCACTCTGCCTGTGTCTCTCGCACATT
TCTACGTTCTTGGAGATGCCACCCCAAGCTTATCTTCACTGAGGAAACACTAGGCTTGAAACGGACGGA-----------
-------AGCAAGGGAT---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCACTAGCAGAGTTAATCAAATTCTG
AAAAATCACTCAGACACCAGTGTGAAGATACTTGAGTTTGTATTTGATGATTGTAACAATGTCAACACATGTCATCTAAA
TAGTTGGCTCCAGAAAGCTGTCACGCCAGGGATTGAAAAAATCACCCTTTTTCTGCCTTGGCGATATAGGGAAGA-GTAC
AACTTCCCGTGCTCAATTTTACTTGATGGGCGTGGAAACTCAATTTGTTATCTTGACCTCACCAATTGTGCCTTCCATCC
CATGGTTGGATTTGATTGCTTGAGAAGCCTGACAAAGCTGCGTCTCTATGGAGTTTGTATCACGGGGGATGAGTTGGGGC
ATCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTGCAAGTCTGGTGTTGCATGGAGCTAATCTGCTTGACGATACCATTC
TGGCTGCAGCGGCTTAGTTGTTTGACTGTGTCAGAGTGCAATATGCTGCGAGTGATAGAGAGCACAGCTCCAAACTTCAC
CACTTTAGACTTCTTTGGTGAACCAGTACAACTCGTGCTTAGAGAATCATCAAAGGTCAAACACTTGAAGGTGGGGTATT
CATATAAGCCCAATGCTGTAAGTTATGCTATCACTAAGCTACCTTCTATTGCGCCACATCTTCAGACTCTTGCTATATAC
TCGTCTTCTGAGGTATACTCTGAAGCTTCA-A-TTATTATATTCCAGTGTTTATGAATTGTAAGAAGGAATGTGATTAAT
TCGAGATATCTTTGTGCAGACGGTTAATACCCCAATGGTAGCTGACAAATTCCTTGACATAAAGCACTTGAATATTCACC
TTGGTGAGGATGATGATGATGCTGTTACCCCGACCTATGATTATTTATCCTTGGCTTCGTTTCTGGATGCTTGTCCTGTC
CTGGAGAGTTTCACCTTAAGTGTGAGTTTACTGTTCACGCTTCAAATGTGTCTAAGTATCTGCTGCGGAGAC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATTTAATTTGATTGGCAATAATATTTGATGCTATGCAGGTAGA
TCAGAGTGATATGCAGCATGAGTCGGTTTTTGGAGATCCCTCCTTATTTTTGAGGCAGATTCTTCAACACGAGCATGAGA
GGCTCAAGAAGGTGCAGATCATTGGCTTTTGCTCTGCAAAGAGCATGGTGGAGCTAACATGTGATATTCTCAAGAATGCA
ACATCACTTGAGAGCCTCACACTGGACTGTATATTTGGTGCCGGTACGGGGGCGATTAGTGATTCTGTTAGGTGTGGTCC
CTCAAAATCCGGTAAATGCTGGATCAGAAGCCGAGCTATGATCTTGGAAGCACATAAAGCAGTTGGTGCCATCAAAAGAT
ACATCCTGGAGAGAGTTCCCCCTGCAGTCAAGTTAAATGTTGGGGGGCCCTGTAGCCGGTGCCAAGCTATGAATGTGATG
CTACCGTAATTATCCAATGTTTAGATTTGCAATGTTGTAGATG---TCATTGTCATTGTTTAGTG----TTATAGCT---
--------------------------------------------------------------------------------
-----------------------------------------AGTATATGCAACGCCCGAATGTGTTGTCAGAATTTTTCT
ATGCTATGCACCTTATTGGCGTCTTTTAACACTGCAAGTTGATTGTTACTCCACCTTGATTAGAGCTA-AGGCTAGCTAT
GCAAATACATTTTGGTCTGTTTGGTTCCAAAGTATTC-----------TTAAGTATTCGAAGAATACCAAAGTATCTTGA
AAAACTATATGATA-----------------CATAATAAGTGTCGTAATTTGGGACTAAGGTTGAACTAACCTGAATTGA
AAATTGCCACACTTATT-TGGATCAGAGGGAGTACCTGTTTGGAAGCAATGAT---------------------------
--------------------------------------------------------------------------------
----AACACCAGTTTTTCGAAGTATTGTTGAAACGATGATGGTGTGTATGGCAATAATAAAAGTACATAGCACTGTACTT
GGTCACCGTCCTCTTCTTTTCCCTCTCTGTTTGTTGCCGGATTGACTAGTCAAGGTGAATAAATTTAGCGCTGAAATCAC
CAAACTCAG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>chr3A_630
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GTTGGCTACTCTAGGTTTTGTTCAAAGAATAGGTTATGAAATTGGTTGAAAAAAAGAA
TAGGTTATGGGGAAAAAATCCAACATTATTAATTTCTTAGTGATATACTCCAGTAGTTGATCATACAAATTGCAACGAAC
TGT-------GAAAGCCACCTACATTACTCTTACATAGAAAAGGAATCTCGGTAATG-AGCTGAACTTATCTACCAAAAT
TACATTTCAATGCACTTACCTTCCTCAATGTGCAGCACATTTTGTACAAGTGCGAGCAGATCACTTGGGATTTAACATTT
CTCTGTATCATTCCACTATTATTTGTTAA-AAAT-TGT--------TCAATCCCAGTGATCAACTATTTTTTCCATGCTT
GTGCAGGATATCTGGTGCCTTATACATTCCCTAATGCCATTGCGTGATTCTGCCTGCTCTGCCTGTGTATCACGCACATT
TCTACGTTCTTGGAGATGTCACCCCAAGCTTATATTCAGTGAGGAAACACTAGGCTTGAAACAGAAAGAAGGCCAAAATA
TCGATATAGCAAGGGGT---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCACTAGCAGAGTTGATCATATTCTG
AAAAATCACTCAGACACCGGTGTGAAGATACTCAAGTTTGTAATCCGTGATCATTACAATGTCGACACTTGTCATCTAAA
TAGTTGGCTCCAGAAAGCTATCACACCAGGGATTGAAGAAGTCACACTTTTGCTGCCTACAAAATA-TAGGAAAATGTAT
GAAGTCCCGTGTTCAGCTCTACTTGATGGGTGTGGAAACTCAATCTGGTATCTTTACCTCACCAATTGTGCCTTCCGCCC
CCCGGTTGGATTTGATTGCTTGAGAAGCCTGACAAAGCTGCATCTGTATGGAGTTTGTATCACGGGGGATGAGTTGGGGC
ATCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTAGAAGTCAGCTGTTGCATGAAGCTAATCTGCCTGGAGATACCATTC
TGGCTGGAGCGGCTTAGTTGCTTGACTGTGTCTCAGTGCGACAAGCTGAGAGTGATAAAGAGCACAGCTCCACACCTCTC
CATTTTTGACTTCTTTGGTGAACCAGTACAACTCGTGCTTGGAGAATCATCAAAGGTAAAAGACTTAAGGGTGGGGTATT
CATTTGCGCCCAATGCTGTGAGTTATGCTATCACTAAGCTACCTTTCATCGCACCACATCTTGAGACTCTTACTGTATAC
TCGTTTTGTGAGGTATACTCTGAAGCTTCA-CATTATTAGATTCCAGTGTTTATGACTCATAGGAAGGAATATGATTAAT
TCGAGTTATCTTTGTGCAGAGGGTTAGTACCCCAATGGTAGCTGACAAATTCCTCCACATAAAGCACTTGAATATCTACC
TTGGTGAGGATGATGGTGGGGCTGTTACCCCGGCCTATGATTATTTATCCTTGGCTTCATTTCTGGATGCTTGTCCTGTC
TTGGAGAGTTTCATCTTAAGTGTGAGTTAACTGTTCACGCTGCAAAGGTGTCTA-GTATCTGCCATGGAGAC--------
--------------------------------------------------------------------------------
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-------------------------------------ATTT---------------------------------------
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>chr3D_834
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------------------------TCCATGTGCAGCACATTTTGTACAAGTGCGAGCAGATCACTTGGGATTTAAAATTT
CTCTGTATGATCCCACTATTATTTGTTAA-AAAA-TGC--------ACAATCCCAGTGATCAACTATTTTTTCCATGCTT
GTGCAGGATATCTGGTGCCTTATACATTCCCTAATGCCATTGCGTGATTCTGCCCGTTCTGCCTGTGTATCTCGCACATT
TCTATGTTCCTGGAGATGCCACCCCAAGCTTATATTCAGTGAGGAAACACTAGGCTTGAAACAGAAGGAAGGCCAAAATA
TCGATATAGCAAGGGGT---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCACTAGCAGAGTTGATCATATTCTG
AAAAATCACTCAGACACCGGTGTGAAGATACTCAAGTTTGTAATCCGTGATCATTACAATGTCGACACTTGTCATCTAAA
TAGTTGGCTCCAGAAAGCTGTCACACCAGGGATTGAAGAAGTCACACTTTTGCTGCCTACGAAACA-TAGGAAAATGTAT
GAATTCCCGTGTTCAGCTCTACTTGATGGGCGTGGAAACTCAATCTGGTATCTTTACCTCACCAATTGTGCCTTCCGCCC
CCCGGTTGGATTTGATTGCTTGAGAAGCCTGGCAAAGCTGCATCTGTATGGAGTTTGTATCACGGGGGATGAGTTGGGGC
ATCTTATTTCCAATTGTTTTGCTTTGGAGGAGTTAGAAGTCAGCTGTTGCATGAAGCTAATCTGCCTGGAGATACCATTC
TGGCTGGAGCGGCTTAGTTGCTTGACTGTGTCTCAGTGCGACAAGCTGAGAGTGATAAAGAGCACAGCTCCGCACCTCTC
CATTTTTGACTTCTTTGGTGAACCAGTACAACTCGTGCTTGGAGAATCATCAAAGGTAAAAGACTTAAGGGTGGGGTATT
CATTTGCGCCCAATGCTGTGAGTTATGCTATCACTAAGCTACCTTTCATCGCACCACATCTTGAGACTCTTACTGTATAC
TCGTTTTGTGAGGTATGCTCTGAAGCTTCACA-TCATTAGATTCCAGTGTTTATGACTCGTAGGAAGGAATATGATTAAT
TCGAGATATCTTTGTGCAGAGGGTTAGTACCCCAATGGTAGCTGACAAATTCATCCACATAAAGCACTTGAATATCTACT
TTGGTGAGGATGGTGAGGGGGCTGTTACCCCTGCCTATGATTATTTATCCTTGGCTTCATTTCTGGATGCTTGTCCTGTC
TTGGAGAGTTTCATCTTAAGTGTGAGTTAACTGTTCACGCTGCAAAGGTGTCTA-GTATCTGCCGTGGAGAC--------
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-------------------------------------ATTT---------------------------------------
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>SNPs
--------------------------------------------------S------------------------S----
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-------------------------------------------------------------------S------------
-----------------------------------S---------S----------------------------------
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-S----------------------------------S---S---------S-----------------------------
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--------------------------------------------------------------------S-----------
-----------------------------------------------------------S--------------------
-----------------------------S------------------------------------------S-------
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------------------------------------------------------------------S-------------
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--------------------------------------------------------------S----------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
-------------S-----------------------------------------S----------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------S-----------
-----------------------------------------------S--------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------S-----------------------------------------------
---------------------------------------------------------S----------------------
------S---------S------------------------------------------------S--S-----------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------S-----------------------------------------------------------------
-------------------------------------SSSSSSSSSSS----------S---------------------
-------------------------S-SS-S------------S---------S--------------------------
-------------------S---SS--S----------------------------S--S--------------------
------S-----------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----------------------S-----------------------------------S------------S---S---
----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_642
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------GCACCATTCCTTGACTGTAA
CG------------------------------------------------------------------------------
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------------------------------------------
>reverse_2568
--------------------------------------------------------------------------------
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-------CGTCGCCTCCTCCTTGATTT-----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>forward_2502
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--CAGAGTGAGGGTGCTGCAAT----------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>reverse_4185
--------------------------------------------------------------------------------
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------------------------GCTTGTCATCGTCCTCTGCT------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
