Multiple sequence alignment - TraesCS3D01G354800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G354800 chr3D 100.000 2713 0 0 1 2713 465459631 465462343 0.000000e+00 5011
1 TraesCS3D01G354800 chr3A 90.736 1889 107 35 159 2025 608737304 608739146 0.000000e+00 2457
2 TraesCS3D01G354800 chr3A 90.000 300 19 7 2025 2317 608739080 608739375 7.090000e-101 377
3 TraesCS3D01G354800 chr3B 91.580 1734 99 21 274 1982 618860717 618862428 0.000000e+00 2350
4 TraesCS3D01G354800 chr3B 88.223 467 27 17 2065 2525 618862707 618863151 1.430000e-147 532


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G354800 chr3D 465459631 465462343 2712 False 5011 5011 100.0000 1 2713 1 chr3D.!!$F1 2712
1 TraesCS3D01G354800 chr3A 608737304 608739375 2071 False 1417 2457 90.3680 159 2317 2 chr3A.!!$F1 2158
2 TraesCS3D01G354800 chr3B 618860717 618863151 2434 False 1441 2350 89.9015 274 2525 2 chr3B.!!$F1 2251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.03659 GCCCAACCCAATGCAACAAT 59.963 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2032 0.100325 TCAACCACACTTTGCAAGCG 59.9 50.0 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.987046 GGTGAGCTTTTGTCTCGTTTG 58.013 47.619 0.00 0.00 33.41 2.93
21 22 2.376032 GTGAGCTTTTGTCTCGTTTGC 58.624 47.619 0.00 0.00 33.41 3.68
22 23 1.333619 TGAGCTTTTGTCTCGTTTGCC 59.666 47.619 0.00 0.00 33.41 4.52
23 24 0.668535 AGCTTTTGTCTCGTTTGCCC 59.331 50.000 0.00 0.00 0.00 5.36
24 25 0.318699 GCTTTTGTCTCGTTTGCCCC 60.319 55.000 0.00 0.00 0.00 5.80
25 26 0.313987 CTTTTGTCTCGTTTGCCCCC 59.686 55.000 0.00 0.00 0.00 5.40
26 27 0.395862 TTTTGTCTCGTTTGCCCCCA 60.396 50.000 0.00 0.00 0.00 4.96
27 28 0.178975 TTTGTCTCGTTTGCCCCCAT 60.179 50.000 0.00 0.00 0.00 4.00
28 29 0.178975 TTGTCTCGTTTGCCCCCATT 60.179 50.000 0.00 0.00 0.00 3.16
29 30 0.178975 TGTCTCGTTTGCCCCCATTT 60.179 50.000 0.00 0.00 0.00 2.32
30 31 0.966179 GTCTCGTTTGCCCCCATTTT 59.034 50.000 0.00 0.00 0.00 1.82
31 32 1.067846 GTCTCGTTTGCCCCCATTTTC 60.068 52.381 0.00 0.00 0.00 2.29
32 33 1.203001 TCTCGTTTGCCCCCATTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
33 34 1.202348 CTCGTTTGCCCCCATTTTCTC 59.798 52.381 0.00 0.00 0.00 2.87
34 35 0.965439 CGTTTGCCCCCATTTTCTCA 59.035 50.000 0.00 0.00 0.00 3.27
35 36 1.067635 CGTTTGCCCCCATTTTCTCAG 60.068 52.381 0.00 0.00 0.00 3.35
36 37 2.247358 GTTTGCCCCCATTTTCTCAGA 58.753 47.619 0.00 0.00 0.00 3.27
37 38 2.220653 TTGCCCCCATTTTCTCAGAG 57.779 50.000 0.00 0.00 0.00 3.35
38 39 1.075601 TGCCCCCATTTTCTCAGAGT 58.924 50.000 0.00 0.00 0.00 3.24
39 40 1.004745 TGCCCCCATTTTCTCAGAGTC 59.995 52.381 0.00 0.00 0.00 3.36
40 41 1.004745 GCCCCCATTTTCTCAGAGTCA 59.995 52.381 0.00 0.00 0.00 3.41
41 42 2.716217 CCCCCATTTTCTCAGAGTCAC 58.284 52.381 0.00 0.00 0.00 3.67
42 43 2.619074 CCCCCATTTTCTCAGAGTCACC 60.619 54.545 0.00 0.00 0.00 4.02
43 44 2.040278 CCCCATTTTCTCAGAGTCACCA 59.960 50.000 0.00 0.00 0.00 4.17
44 45 3.077359 CCCATTTTCTCAGAGTCACCAC 58.923 50.000 0.00 0.00 0.00 4.16
45 46 3.244700 CCCATTTTCTCAGAGTCACCACT 60.245 47.826 0.00 0.00 34.57 4.00
46 47 4.392940 CCATTTTCTCAGAGTCACCACTT 58.607 43.478 0.00 0.00 30.63 3.16
47 48 4.453819 CCATTTTCTCAGAGTCACCACTTC 59.546 45.833 0.00 0.00 30.63 3.01
48 49 4.753516 TTTTCTCAGAGTCACCACTTCA 57.246 40.909 0.00 0.00 30.63 3.02
49 50 3.735237 TTCTCAGAGTCACCACTTCAC 57.265 47.619 0.00 0.00 30.63 3.18
50 51 1.964223 TCTCAGAGTCACCACTTCACC 59.036 52.381 0.00 0.00 30.63 4.02
51 52 1.967066 CTCAGAGTCACCACTTCACCT 59.033 52.381 0.00 0.00 30.63 4.00
52 53 3.157881 CTCAGAGTCACCACTTCACCTA 58.842 50.000 0.00 0.00 30.63 3.08
53 54 3.157881 TCAGAGTCACCACTTCACCTAG 58.842 50.000 0.00 0.00 30.63 3.02
54 55 1.896465 AGAGTCACCACTTCACCTAGC 59.104 52.381 0.00 0.00 30.63 3.42
55 56 1.896465 GAGTCACCACTTCACCTAGCT 59.104 52.381 0.00 0.00 30.63 3.32
56 57 1.896465 AGTCACCACTTCACCTAGCTC 59.104 52.381 0.00 0.00 0.00 4.09
57 58 0.888619 TCACCACTTCACCTAGCTCG 59.111 55.000 0.00 0.00 0.00 5.03
58 59 0.888619 CACCACTTCACCTAGCTCGA 59.111 55.000 0.00 0.00 0.00 4.04
59 60 1.478510 CACCACTTCACCTAGCTCGAT 59.521 52.381 0.00 0.00 0.00 3.59
60 61 1.478510 ACCACTTCACCTAGCTCGATG 59.521 52.381 0.00 0.00 0.00 3.84
61 62 1.565305 CACTTCACCTAGCTCGATGC 58.435 55.000 0.00 0.00 43.29 3.91
109 110 4.329545 GCAGCCACCTTCCGTCCA 62.330 66.667 0.00 0.00 0.00 4.02
110 111 2.358737 CAGCCACCTTCCGTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
111 112 3.637273 AGCCACCTTCCGTCCACC 61.637 66.667 0.00 0.00 0.00 4.61
112 113 4.717313 GCCACCTTCCGTCCACCC 62.717 72.222 0.00 0.00 0.00 4.61
113 114 4.029809 CCACCTTCCGTCCACCCC 62.030 72.222 0.00 0.00 0.00 4.95
114 115 3.246112 CACCTTCCGTCCACCCCA 61.246 66.667 0.00 0.00 0.00 4.96
115 116 3.246880 ACCTTCCGTCCACCCCAC 61.247 66.667 0.00 0.00 0.00 4.61
116 117 3.246112 CCTTCCGTCCACCCCACA 61.246 66.667 0.00 0.00 0.00 4.17
117 118 2.347490 CTTCCGTCCACCCCACAG 59.653 66.667 0.00 0.00 0.00 3.66
118 119 3.901797 CTTCCGTCCACCCCACAGC 62.902 68.421 0.00 0.00 0.00 4.40
122 123 3.897122 GTCCACCCCACAGCCCAA 61.897 66.667 0.00 0.00 0.00 4.12
123 124 3.897122 TCCACCCCACAGCCCAAC 61.897 66.667 0.00 0.00 0.00 3.77
124 125 4.994756 CCACCCCACAGCCCAACC 62.995 72.222 0.00 0.00 0.00 3.77
125 126 4.994756 CACCCCACAGCCCAACCC 62.995 72.222 0.00 0.00 0.00 4.11
127 128 4.232061 CCCCACAGCCCAACCCAA 62.232 66.667 0.00 0.00 0.00 4.12
128 129 2.120274 CCCACAGCCCAACCCAAT 59.880 61.111 0.00 0.00 0.00 3.16
129 130 2.285024 CCCACAGCCCAACCCAATG 61.285 63.158 0.00 0.00 0.00 2.82
130 131 2.658422 CACAGCCCAACCCAATGC 59.342 61.111 0.00 0.00 0.00 3.56
131 132 2.200930 ACAGCCCAACCCAATGCA 59.799 55.556 0.00 0.00 0.00 3.96
132 133 1.459158 ACAGCCCAACCCAATGCAA 60.459 52.632 0.00 0.00 0.00 4.08
133 134 1.004679 CAGCCCAACCCAATGCAAC 60.005 57.895 0.00 0.00 0.00 4.17
134 135 1.459158 AGCCCAACCCAATGCAACA 60.459 52.632 0.00 0.00 0.00 3.33
135 136 1.053264 AGCCCAACCCAATGCAACAA 61.053 50.000 0.00 0.00 0.00 2.83
136 137 0.036590 GCCCAACCCAATGCAACAAT 59.963 50.000 0.00 0.00 0.00 2.71
137 138 1.277557 GCCCAACCCAATGCAACAATA 59.722 47.619 0.00 0.00 0.00 1.90
138 139 2.677613 GCCCAACCCAATGCAACAATAG 60.678 50.000 0.00 0.00 0.00 1.73
139 140 2.830923 CCCAACCCAATGCAACAATAGA 59.169 45.455 0.00 0.00 0.00 1.98
140 141 3.368323 CCCAACCCAATGCAACAATAGAC 60.368 47.826 0.00 0.00 0.00 2.59
141 142 3.257873 CCAACCCAATGCAACAATAGACA 59.742 43.478 0.00 0.00 0.00 3.41
142 143 4.081531 CCAACCCAATGCAACAATAGACAT 60.082 41.667 0.00 0.00 0.00 3.06
143 144 4.989279 ACCCAATGCAACAATAGACATC 57.011 40.909 0.00 0.00 0.00 3.06
144 145 4.603131 ACCCAATGCAACAATAGACATCT 58.397 39.130 0.00 0.00 0.00 2.90
145 146 5.018809 ACCCAATGCAACAATAGACATCTT 58.981 37.500 0.00 0.00 0.00 2.40
146 147 5.481473 ACCCAATGCAACAATAGACATCTTT 59.519 36.000 0.00 0.00 0.00 2.52
147 148 6.014327 ACCCAATGCAACAATAGACATCTTTT 60.014 34.615 0.00 0.00 0.00 2.27
148 149 6.532657 CCCAATGCAACAATAGACATCTTTTC 59.467 38.462 0.00 0.00 0.00 2.29
149 150 7.318141 CCAATGCAACAATAGACATCTTTTCT 58.682 34.615 0.00 0.00 0.00 2.52
150 151 7.274904 CCAATGCAACAATAGACATCTTTTCTG 59.725 37.037 0.00 0.00 0.00 3.02
151 152 7.692460 ATGCAACAATAGACATCTTTTCTGA 57.308 32.000 0.00 0.00 0.00 3.27
152 153 7.137490 TGCAACAATAGACATCTTTTCTGAG 57.863 36.000 0.00 0.00 0.00 3.35
153 154 6.936335 TGCAACAATAGACATCTTTTCTGAGA 59.064 34.615 0.00 0.00 0.00 3.27
154 155 7.445096 TGCAACAATAGACATCTTTTCTGAGAA 59.555 33.333 0.00 0.00 0.00 2.87
155 156 8.292448 GCAACAATAGACATCTTTTCTGAGAAA 58.708 33.333 3.02 3.02 0.00 2.52
156 157 9.604626 CAACAATAGACATCTTTTCTGAGAAAC 57.395 33.333 7.21 0.00 0.00 2.78
157 158 9.566432 AACAATAGACATCTTTTCTGAGAAACT 57.434 29.630 7.21 3.14 0.00 2.66
184 185 7.742556 AGACATCTTTTCTGAGAAAAAGGAG 57.257 36.000 19.62 9.44 43.38 3.69
208 210 0.319405 ACATTAGCCGGGCCGTATAC 59.681 55.000 26.32 11.25 0.00 1.47
209 211 0.606604 CATTAGCCGGGCCGTATACT 59.393 55.000 26.32 17.93 0.00 2.12
210 212 1.820519 CATTAGCCGGGCCGTATACTA 59.179 52.381 26.32 16.90 0.00 1.82
211 213 1.993956 TTAGCCGGGCCGTATACTAA 58.006 50.000 26.32 21.31 0.00 2.24
212 214 1.538047 TAGCCGGGCCGTATACTAAG 58.462 55.000 26.32 7.75 0.00 2.18
213 215 0.468771 AGCCGGGCCGTATACTAAGT 60.469 55.000 26.32 0.00 0.00 2.24
214 216 1.202927 AGCCGGGCCGTATACTAAGTA 60.203 52.381 26.32 0.00 0.00 2.24
215 217 1.068264 GCCGGGCCGTATACTAAGTAC 60.068 57.143 26.32 0.00 0.00 2.73
216 218 2.508526 CCGGGCCGTATACTAAGTACT 58.491 52.381 26.32 0.00 0.00 2.73
217 219 2.227388 CCGGGCCGTATACTAAGTACTG 59.773 54.545 26.32 0.00 0.00 2.74
218 220 2.227388 CGGGCCGTATACTAAGTACTGG 59.773 54.545 19.97 0.00 0.00 4.00
219 221 2.560105 GGGCCGTATACTAAGTACTGGG 59.440 54.545 0.00 0.00 0.00 4.45
220 222 2.029560 GGCCGTATACTAAGTACTGGGC 60.030 54.545 0.00 0.00 35.75 5.36
226 228 0.818296 ACTAAGTACTGGGCTGCTCG 59.182 55.000 0.00 0.00 0.00 5.03
227 229 0.818296 CTAAGTACTGGGCTGCTCGT 59.182 55.000 0.00 0.65 0.00 4.18
230 232 2.283604 TACTGGGCTGCTCGTGGA 60.284 61.111 0.00 0.00 0.00 4.02
231 233 2.351244 TACTGGGCTGCTCGTGGAG 61.351 63.158 1.19 1.19 34.56 3.86
246 248 2.746904 CGTGGAGGCATATCAACACAAA 59.253 45.455 0.00 0.00 0.00 2.83
247 249 3.181507 CGTGGAGGCATATCAACACAAAG 60.182 47.826 0.00 0.00 0.00 2.77
248 250 3.758554 GTGGAGGCATATCAACACAAAGT 59.241 43.478 0.00 0.00 0.00 2.66
258 260 3.958018 TCAACACAAAGTAACACTGGGT 58.042 40.909 0.00 0.00 0.00 4.51
267 269 5.362105 AAGTAACACTGGGTTGTTGTAGA 57.638 39.130 5.35 0.00 40.04 2.59
268 270 4.957296 AGTAACACTGGGTTGTTGTAGAG 58.043 43.478 5.35 0.00 40.04 2.43
436 441 0.787787 CAACAGTCGGAAATCGCGAA 59.212 50.000 15.24 0.00 39.05 4.70
437 442 1.068474 AACAGTCGGAAATCGCGAAG 58.932 50.000 15.24 2.50 39.05 3.79
494 506 4.415150 CACCGCACAGCCCCAGAT 62.415 66.667 0.00 0.00 0.00 2.90
634 646 3.912907 CCCTACAGCCCGCCGTAG 61.913 72.222 3.53 3.53 35.82 3.51
672 684 1.676006 CGGCATATCCCCACAAACTTC 59.324 52.381 0.00 0.00 0.00 3.01
683 695 0.779997 ACAAACTTCCCCCAGCATCT 59.220 50.000 0.00 0.00 0.00 2.90
687 699 0.985490 ACTTCCCCCAGCATCTCTCC 60.985 60.000 0.00 0.00 0.00 3.71
695 707 1.269673 CCAGCATCTCTCCACAGATCG 60.270 57.143 0.00 0.00 30.07 3.69
696 708 0.388659 AGCATCTCTCCACAGATCGC 59.611 55.000 0.00 0.00 30.07 4.58
702 714 5.565637 GCATCTCTCCACAGATCGCTATTTA 60.566 44.000 0.00 0.00 30.07 1.40
706 718 4.645136 TCTCCACAGATCGCTATTTACACT 59.355 41.667 0.00 0.00 0.00 3.55
707 719 5.127194 TCTCCACAGATCGCTATTTACACTT 59.873 40.000 0.00 0.00 0.00 3.16
708 720 5.348986 TCCACAGATCGCTATTTACACTTC 58.651 41.667 0.00 0.00 0.00 3.01
709 721 4.508124 CCACAGATCGCTATTTACACTTCC 59.492 45.833 0.00 0.00 0.00 3.46
710 722 4.508124 CACAGATCGCTATTTACACTTCCC 59.492 45.833 0.00 0.00 0.00 3.97
713 725 3.965379 TCGCTATTTACACTTCCCACA 57.035 42.857 0.00 0.00 0.00 4.17
714 726 3.857052 TCGCTATTTACACTTCCCACAG 58.143 45.455 0.00 0.00 0.00 3.66
715 727 3.259876 TCGCTATTTACACTTCCCACAGT 59.740 43.478 0.00 0.00 0.00 3.55
728 740 3.991051 ACAGTGTCTCGTGGCCCG 61.991 66.667 0.00 3.30 38.13 6.13
749 761 3.536570 GCCAGGGACTTTTATCTGAGAC 58.463 50.000 0.00 0.00 34.60 3.36
752 764 4.467795 CCAGGGACTTTTATCTGAGACTGA 59.532 45.833 0.00 0.00 34.60 3.41
756 768 7.445402 CAGGGACTTTTATCTGAGACTGAAAAA 59.555 37.037 0.00 0.00 34.60 1.94
757 769 7.663493 AGGGACTTTTATCTGAGACTGAAAAAG 59.337 37.037 14.44 14.44 38.97 2.27
938 950 2.446802 GGAAGGCGGGGATCCTCT 60.447 66.667 10.68 0.96 32.45 3.69
1111 1124 4.151582 GGGCTACTACGGCGGCAA 62.152 66.667 13.24 0.00 0.00 4.52
1359 1372 1.460699 GGAGGGCTCTGTTTTGGGT 59.539 57.895 0.00 0.00 0.00 4.51
1360 1373 0.609406 GGAGGGCTCTGTTTTGGGTC 60.609 60.000 0.00 0.00 0.00 4.46
1383 1397 6.817140 GTCGATTTTGGGAAGTGTAGATACTT 59.183 38.462 0.00 0.00 43.24 2.24
1388 1402 4.616553 TGGGAAGTGTAGATACTTAGCCA 58.383 43.478 0.00 0.00 40.78 4.75
1409 1423 5.715070 CCAGTTTCTCCTCTGTTGTACTAG 58.285 45.833 0.00 0.00 0.00 2.57
1443 1458 4.141914 GGATTAGGTGTGTTCTAGGGAGTG 60.142 50.000 0.00 0.00 0.00 3.51
1464 1479 5.372066 AGTGGTAGTATGTAGCTAGGTAGGT 59.628 44.000 0.86 0.00 37.80 3.08
1574 1589 0.096628 GATGCGACTCTGCTTGCTTG 59.903 55.000 0.00 0.00 35.36 4.01
1592 1607 2.455674 TGTTGCGCACTTCTGTATCT 57.544 45.000 11.12 0.00 0.00 1.98
1593 1608 2.068519 TGTTGCGCACTTCTGTATCTG 58.931 47.619 11.12 0.00 0.00 2.90
1594 1609 1.078709 TTGCGCACTTCTGTATCTGC 58.921 50.000 11.12 0.00 0.00 4.26
1595 1610 0.247460 TGCGCACTTCTGTATCTGCT 59.753 50.000 5.66 0.00 0.00 4.24
1596 1611 0.926846 GCGCACTTCTGTATCTGCTC 59.073 55.000 0.30 0.00 0.00 4.26
1650 1665 4.811908 TGTTGTTCTTCATGATGCCATTG 58.188 39.130 0.00 0.00 0.00 2.82
1654 1669 2.578786 TCTTCATGATGCCATTGCGAT 58.421 42.857 0.00 0.00 41.78 4.58
1751 1778 4.320456 CTGCTGACCCTGTGCGGT 62.320 66.667 0.00 0.00 39.49 5.68
1810 1837 3.863400 GCATGCCAGTGATTTCTTGCTTT 60.863 43.478 6.36 0.00 0.00 3.51
1856 1883 3.058016 GTGTGATCACCAATCAACCTGTG 60.058 47.826 22.85 0.00 45.88 3.66
1945 1972 3.123674 GTGCCTCCACTGTTCGTAG 57.876 57.895 0.00 0.00 38.93 3.51
1946 1973 1.014564 GTGCCTCCACTGTTCGTAGC 61.015 60.000 0.00 0.00 38.93 3.58
1985 2016 2.062971 CTGGGCCAGCTGATTAATGT 57.937 50.000 22.68 0.00 0.00 2.71
1988 2019 3.554934 TGGGCCAGCTGATTAATGTTAG 58.445 45.455 17.39 0.00 0.00 2.34
1989 2020 2.887152 GGGCCAGCTGATTAATGTTAGG 59.113 50.000 17.39 0.00 0.00 2.69
1990 2021 3.435026 GGGCCAGCTGATTAATGTTAGGA 60.435 47.826 17.39 0.00 0.00 2.94
1991 2022 3.817647 GGCCAGCTGATTAATGTTAGGAG 59.182 47.826 17.39 0.00 0.00 3.69
1992 2023 4.455606 GCCAGCTGATTAATGTTAGGAGT 58.544 43.478 17.39 0.00 0.00 3.85
1994 2025 6.055588 GCCAGCTGATTAATGTTAGGAGTTA 58.944 40.000 17.39 0.00 0.00 2.24
1996 2027 7.047891 CCAGCTGATTAATGTTAGGAGTTACA 58.952 38.462 17.39 0.00 0.00 2.41
1997 2028 7.011482 CCAGCTGATTAATGTTAGGAGTTACAC 59.989 40.741 17.39 0.00 0.00 2.90
1998 2029 7.766278 CAGCTGATTAATGTTAGGAGTTACACT 59.234 37.037 8.42 0.00 0.00 3.55
1999 2030 8.978472 AGCTGATTAATGTTAGGAGTTACACTA 58.022 33.333 0.00 0.00 0.00 2.74
2007 2038 2.685100 AGGAGTTACACTAACGCTTGC 58.315 47.619 0.00 0.00 43.29 4.01
2010 2041 3.249080 GGAGTTACACTAACGCTTGCAAA 59.751 43.478 0.00 0.00 43.29 3.68
2011 2042 4.455124 GAGTTACACTAACGCTTGCAAAG 58.545 43.478 0.00 0.00 43.29 2.77
2012 2043 3.875134 AGTTACACTAACGCTTGCAAAGT 59.125 39.130 0.00 0.43 43.29 2.66
2045 2113 6.114187 TGTTATGGGCCATCTGATTAGTAG 57.886 41.667 25.07 0.00 0.00 2.57
2046 2114 5.013079 TGTTATGGGCCATCTGATTAGTAGG 59.987 44.000 25.07 0.00 0.00 3.18
2049 2117 3.243724 GGGCCATCTGATTAGTAGGAGT 58.756 50.000 4.39 0.00 0.00 3.85
2051 2119 4.221041 GGGCCATCTGATTAGTAGGAGTAC 59.779 50.000 4.39 0.00 0.00 2.73
2052 2120 5.081032 GGCCATCTGATTAGTAGGAGTACT 58.919 45.833 0.00 0.00 42.49 2.73
2053 2121 6.246919 GGCCATCTGATTAGTAGGAGTACTA 58.753 44.000 0.00 0.00 40.23 1.82
2054 2122 6.376018 GGCCATCTGATTAGTAGGAGTACTAG 59.624 46.154 0.00 0.00 41.75 2.57
2072 2302 7.616313 AGTACTAGTAGGAGTTACACTAACGT 58.384 38.462 1.87 0.00 43.29 3.99
2076 2306 6.396829 AGTAGGAGTTACACTAACGTTTGT 57.603 37.500 5.91 8.07 43.29 2.83
2127 2361 3.364366 CGCTGTTTTGTTTTGTTTTGCCA 60.364 39.130 0.00 0.00 0.00 4.92
2346 2587 1.873591 CCGTGGTCCTGAAACTGAAAG 59.126 52.381 0.00 0.00 42.29 2.62
2356 2597 5.072741 CCTGAAACTGAAAGAAATGGAGGA 58.927 41.667 0.00 0.00 37.43 3.71
2357 2598 5.713861 CCTGAAACTGAAAGAAATGGAGGAT 59.286 40.000 0.00 0.00 37.43 3.24
2358 2599 6.349944 CCTGAAACTGAAAGAAATGGAGGATG 60.350 42.308 0.00 0.00 37.43 3.51
2385 2626 3.241177 GGTGACGCCGACAGTTTC 58.759 61.111 0.00 0.00 0.00 2.78
2386 2627 2.315386 GGTGACGCCGACAGTTTCC 61.315 63.158 0.00 0.00 0.00 3.13
2387 2628 1.593209 GTGACGCCGACAGTTTCCA 60.593 57.895 0.00 0.00 0.00 3.53
2388 2629 1.300620 TGACGCCGACAGTTTCCAG 60.301 57.895 0.00 0.00 0.00 3.86
2389 2630 2.027625 GACGCCGACAGTTTCCAGG 61.028 63.158 0.00 0.00 0.00 4.45
2390 2631 2.342279 CGCCGACAGTTTCCAGGA 59.658 61.111 0.00 0.00 0.00 3.86
2394 2635 0.613260 CCGACAGTTTCCAGGATCCA 59.387 55.000 15.82 0.00 0.00 3.41
2421 2662 2.168621 GACGAACGACGACGACGA 59.831 61.111 25.15 0.00 45.77 4.20
2422 2663 1.852351 GACGAACGACGACGACGAG 60.852 63.158 25.15 16.91 45.77 4.18
2423 2664 3.222323 CGAACGACGACGACGAGC 61.222 66.667 25.15 14.67 45.77 5.03
2424 2665 2.868787 GAACGACGACGACGAGCC 60.869 66.667 25.15 10.12 42.66 4.70
2425 2666 4.731503 AACGACGACGACGAGCCG 62.732 66.667 25.15 15.39 42.66 5.52
2494 2735 2.568612 CGGCAGCGACAGAGAGAA 59.431 61.111 0.00 0.00 0.00 2.87
2501 2742 0.738389 GCGACAGAGAGAAGGAGAGG 59.262 60.000 0.00 0.00 0.00 3.69
2504 2745 1.750778 GACAGAGAGAAGGAGAGGCAG 59.249 57.143 0.00 0.00 0.00 4.85
2506 2747 2.178580 CAGAGAGAAGGAGAGGCAGTT 58.821 52.381 0.00 0.00 0.00 3.16
2509 2750 4.221703 CAGAGAGAAGGAGAGGCAGTTTTA 59.778 45.833 0.00 0.00 0.00 1.52
2515 2756 5.765677 AGAAGGAGAGGCAGTTTTAAACTTC 59.234 40.000 7.71 3.13 40.46 3.01
2516 2757 4.399219 AGGAGAGGCAGTTTTAAACTTCC 58.601 43.478 16.68 16.68 43.98 3.46
2533 2774 2.581216 TCCGAGTGGAAGTGTAGTCT 57.419 50.000 0.00 0.00 42.85 3.24
2534 2775 3.708403 TCCGAGTGGAAGTGTAGTCTA 57.292 47.619 0.00 0.00 42.85 2.59
2535 2776 3.341823 TCCGAGTGGAAGTGTAGTCTAC 58.658 50.000 2.81 2.81 42.85 2.59
2536 2777 3.079578 CCGAGTGGAAGTGTAGTCTACA 58.920 50.000 8.70 8.70 37.49 2.74
2537 2778 3.127203 CCGAGTGGAAGTGTAGTCTACAG 59.873 52.174 13.12 0.00 37.00 2.74
2538 2779 3.426426 CGAGTGGAAGTGTAGTCTACAGC 60.426 52.174 13.12 8.38 39.77 4.40
2539 2780 3.759618 GAGTGGAAGTGTAGTCTACAGCT 59.240 47.826 13.12 10.34 39.77 4.24
2540 2781 4.919793 AGTGGAAGTGTAGTCTACAGCTA 58.080 43.478 13.12 1.78 39.77 3.32
2541 2782 4.701171 AGTGGAAGTGTAGTCTACAGCTAC 59.299 45.833 13.12 12.63 39.77 3.58
2542 2783 4.458295 GTGGAAGTGTAGTCTACAGCTACA 59.542 45.833 13.12 7.41 44.32 2.74
2543 2784 5.048224 GTGGAAGTGTAGTCTACAGCTACAA 60.048 44.000 13.12 0.00 46.81 2.41
2544 2785 5.183331 TGGAAGTGTAGTCTACAGCTACAAG 59.817 44.000 13.12 0.00 46.81 3.16
2545 2786 5.183522 GGAAGTGTAGTCTACAGCTACAAGT 59.816 44.000 13.12 0.00 46.81 3.16
2546 2787 5.630661 AGTGTAGTCTACAGCTACAAGTG 57.369 43.478 13.12 0.00 46.81 3.16
2547 2788 5.314529 AGTGTAGTCTACAGCTACAAGTGA 58.685 41.667 13.12 0.00 46.81 3.41
2548 2789 5.413213 AGTGTAGTCTACAGCTACAAGTGAG 59.587 44.000 13.12 0.00 46.81 3.51
2549 2790 4.700692 TGTAGTCTACAGCTACAAGTGAGG 59.299 45.833 8.70 0.00 43.79 3.86
2550 2791 3.768878 AGTCTACAGCTACAAGTGAGGT 58.231 45.455 0.00 0.00 0.00 3.85
2551 2792 4.153411 AGTCTACAGCTACAAGTGAGGTT 58.847 43.478 0.00 0.00 0.00 3.50
2552 2793 4.218852 AGTCTACAGCTACAAGTGAGGTTC 59.781 45.833 0.00 0.00 0.00 3.62
2553 2794 4.022242 GTCTACAGCTACAAGTGAGGTTCA 60.022 45.833 0.00 0.00 0.00 3.18
2554 2795 3.393089 ACAGCTACAAGTGAGGTTCAG 57.607 47.619 0.00 0.00 0.00 3.02
2555 2796 2.072298 CAGCTACAAGTGAGGTTCAGC 58.928 52.381 0.00 0.00 0.00 4.26
2556 2797 1.974236 AGCTACAAGTGAGGTTCAGCT 59.026 47.619 0.00 0.00 33.23 4.24
2557 2798 2.370189 AGCTACAAGTGAGGTTCAGCTT 59.630 45.455 0.00 0.00 34.35 3.74
2558 2799 2.739379 GCTACAAGTGAGGTTCAGCTTC 59.261 50.000 0.00 0.00 0.00 3.86
2559 2800 1.871080 ACAAGTGAGGTTCAGCTTCG 58.129 50.000 0.00 0.00 0.00 3.79
2560 2801 0.514691 CAAGTGAGGTTCAGCTTCGC 59.485 55.000 0.00 0.00 34.39 4.70
2561 2802 0.394565 AAGTGAGGTTCAGCTTCGCT 59.605 50.000 0.00 0.00 44.42 4.93
2562 2803 1.257743 AGTGAGGTTCAGCTTCGCTA 58.742 50.000 0.00 0.00 41.39 4.26
2563 2804 1.067495 AGTGAGGTTCAGCTTCGCTAC 60.067 52.381 0.00 0.00 41.39 3.58
2564 2805 1.067495 GTGAGGTTCAGCTTCGCTACT 60.067 52.381 0.00 0.00 36.40 2.57
2565 2806 1.067565 TGAGGTTCAGCTTCGCTACTG 60.068 52.381 0.00 0.00 36.40 2.74
2566 2807 0.390472 AGGTTCAGCTTCGCTACTGC 60.390 55.000 0.00 0.00 36.40 4.40
2567 2808 0.670546 GGTTCAGCTTCGCTACTGCA 60.671 55.000 0.00 0.00 36.40 4.41
2568 2809 0.718343 GTTCAGCTTCGCTACTGCAG 59.282 55.000 13.48 13.48 36.40 4.41
2579 2820 2.301577 CTACTGCAGCTTCCACTACC 57.698 55.000 15.27 0.00 0.00 3.18
2580 2821 0.530744 TACTGCAGCTTCCACTACCG 59.469 55.000 15.27 0.00 0.00 4.02
2581 2822 1.293498 CTGCAGCTTCCACTACCGT 59.707 57.895 0.00 0.00 0.00 4.83
2582 2823 0.530744 CTGCAGCTTCCACTACCGTA 59.469 55.000 0.00 0.00 0.00 4.02
2583 2824 0.970640 TGCAGCTTCCACTACCGTAA 59.029 50.000 0.00 0.00 0.00 3.18
2584 2825 1.553248 TGCAGCTTCCACTACCGTAAT 59.447 47.619 0.00 0.00 0.00 1.89
2585 2826 1.933853 GCAGCTTCCACTACCGTAATG 59.066 52.381 0.00 0.00 0.00 1.90
2586 2827 2.418197 GCAGCTTCCACTACCGTAATGA 60.418 50.000 0.00 0.00 0.00 2.57
2587 2828 3.741388 GCAGCTTCCACTACCGTAATGAT 60.741 47.826 0.00 0.00 0.00 2.45
2588 2829 4.500887 GCAGCTTCCACTACCGTAATGATA 60.501 45.833 0.00 0.00 0.00 2.15
2589 2830 5.223382 CAGCTTCCACTACCGTAATGATAG 58.777 45.833 0.00 0.00 0.00 2.08
2590 2831 5.009710 CAGCTTCCACTACCGTAATGATAGA 59.990 44.000 0.00 0.00 0.00 1.98
2591 2832 5.241949 AGCTTCCACTACCGTAATGATAGAG 59.758 44.000 0.00 0.00 0.00 2.43
2592 2833 5.241064 GCTTCCACTACCGTAATGATAGAGA 59.759 44.000 0.00 0.00 0.00 3.10
2593 2834 6.071840 GCTTCCACTACCGTAATGATAGAGAT 60.072 42.308 0.00 0.00 0.00 2.75
2594 2835 7.450124 TTCCACTACCGTAATGATAGAGATC 57.550 40.000 0.00 0.00 0.00 2.75
2595 2836 5.944599 TCCACTACCGTAATGATAGAGATCC 59.055 44.000 0.00 0.00 0.00 3.36
2596 2837 5.710567 CCACTACCGTAATGATAGAGATCCA 59.289 44.000 0.00 0.00 0.00 3.41
2597 2838 6.378564 CCACTACCGTAATGATAGAGATCCAT 59.621 42.308 0.00 0.00 0.00 3.41
2598 2839 7.415765 CCACTACCGTAATGATAGAGATCCATC 60.416 44.444 0.00 0.00 0.00 3.51
2599 2840 5.923733 ACCGTAATGATAGAGATCCATCC 57.076 43.478 0.00 0.00 0.00 3.51
2600 2841 5.333581 ACCGTAATGATAGAGATCCATCCA 58.666 41.667 0.00 0.00 0.00 3.41
2601 2842 5.960811 ACCGTAATGATAGAGATCCATCCAT 59.039 40.000 0.00 0.00 0.00 3.41
2602 2843 7.126061 ACCGTAATGATAGAGATCCATCCATA 58.874 38.462 0.00 0.00 0.00 2.74
2603 2844 7.068839 ACCGTAATGATAGAGATCCATCCATAC 59.931 40.741 0.00 0.00 0.00 2.39
2604 2845 7.429633 CGTAATGATAGAGATCCATCCATACC 58.570 42.308 0.00 0.00 0.00 2.73
2605 2846 6.477053 AATGATAGAGATCCATCCATACCG 57.523 41.667 0.00 0.00 0.00 4.02
2606 2847 4.935578 TGATAGAGATCCATCCATACCGT 58.064 43.478 0.00 0.00 0.00 4.83
2607 2848 6.074698 TGATAGAGATCCATCCATACCGTA 57.925 41.667 0.00 0.00 0.00 4.02
2608 2849 5.886474 TGATAGAGATCCATCCATACCGTAC 59.114 44.000 0.00 0.00 0.00 3.67
2609 2850 4.390129 AGAGATCCATCCATACCGTACT 57.610 45.455 0.00 0.00 0.00 2.73
2610 2851 4.337145 AGAGATCCATCCATACCGTACTC 58.663 47.826 0.00 0.00 0.00 2.59
2611 2852 4.079970 GAGATCCATCCATACCGTACTCA 58.920 47.826 0.00 0.00 0.00 3.41
2612 2853 4.678256 AGATCCATCCATACCGTACTCAT 58.322 43.478 0.00 0.00 0.00 2.90
2613 2854 4.464244 AGATCCATCCATACCGTACTCATG 59.536 45.833 0.00 0.00 0.00 3.07
2614 2855 2.299013 TCCATCCATACCGTACTCATGC 59.701 50.000 0.00 0.00 0.00 4.06
2615 2856 2.300152 CCATCCATACCGTACTCATGCT 59.700 50.000 0.00 0.00 0.00 3.79
2616 2857 3.244215 CCATCCATACCGTACTCATGCTT 60.244 47.826 0.00 0.00 0.00 3.91
2617 2858 3.452755 TCCATACCGTACTCATGCTTG 57.547 47.619 0.00 0.00 0.00 4.01
2618 2859 2.102420 TCCATACCGTACTCATGCTTGG 59.898 50.000 0.00 0.00 0.00 3.61
2619 2860 2.483876 CATACCGTACTCATGCTTGGG 58.516 52.381 0.00 0.00 0.00 4.12
2620 2861 0.177141 TACCGTACTCATGCTTGGGC 59.823 55.000 0.00 0.00 39.26 5.36
2621 2862 1.221840 CCGTACTCATGCTTGGGCT 59.778 57.895 0.00 0.00 39.59 5.19
2622 2863 0.392998 CCGTACTCATGCTTGGGCTT 60.393 55.000 0.00 0.00 39.59 4.35
2623 2864 1.453155 CGTACTCATGCTTGGGCTTT 58.547 50.000 0.00 0.00 39.59 3.51
2624 2865 1.812571 CGTACTCATGCTTGGGCTTTT 59.187 47.619 0.00 0.00 39.59 2.27
2625 2866 2.228822 CGTACTCATGCTTGGGCTTTTT 59.771 45.455 0.00 0.00 39.59 1.94
2649 2890 5.350504 TTTTGAAAAGCTCATGTTTGGGA 57.649 34.783 0.00 0.00 32.78 4.37
2650 2891 5.549742 TTTGAAAAGCTCATGTTTGGGAT 57.450 34.783 0.00 0.00 32.78 3.85
2651 2892 5.549742 TTGAAAAGCTCATGTTTGGGATT 57.450 34.783 0.00 0.00 31.94 3.01
2652 2893 4.885413 TGAAAAGCTCATGTTTGGGATTG 58.115 39.130 0.00 0.00 30.80 2.67
2653 2894 3.967332 AAAGCTCATGTTTGGGATTGG 57.033 42.857 0.00 0.00 30.80 3.16
2654 2895 2.610438 AGCTCATGTTTGGGATTGGT 57.390 45.000 0.00 0.00 0.00 3.67
2655 2896 2.450476 AGCTCATGTTTGGGATTGGTC 58.550 47.619 0.00 0.00 0.00 4.02
2656 2897 1.133025 GCTCATGTTTGGGATTGGTCG 59.867 52.381 0.00 0.00 0.00 4.79
2657 2898 2.710377 CTCATGTTTGGGATTGGTCGA 58.290 47.619 0.00 0.00 0.00 4.20
2658 2899 3.081061 CTCATGTTTGGGATTGGTCGAA 58.919 45.455 0.00 0.00 0.00 3.71
2659 2900 3.081061 TCATGTTTGGGATTGGTCGAAG 58.919 45.455 0.00 0.00 0.00 3.79
2660 2901 1.904287 TGTTTGGGATTGGTCGAAGG 58.096 50.000 0.00 0.00 0.00 3.46
2661 2902 1.144093 TGTTTGGGATTGGTCGAAGGT 59.856 47.619 0.00 0.00 0.00 3.50
2662 2903 2.372504 TGTTTGGGATTGGTCGAAGGTA 59.627 45.455 0.00 0.00 0.00 3.08
2663 2904 3.007635 GTTTGGGATTGGTCGAAGGTAG 58.992 50.000 0.00 0.00 0.00 3.18
2664 2905 1.946984 TGGGATTGGTCGAAGGTAGT 58.053 50.000 0.00 0.00 0.00 2.73
2665 2906 2.262637 TGGGATTGGTCGAAGGTAGTT 58.737 47.619 0.00 0.00 0.00 2.24
2666 2907 2.027561 TGGGATTGGTCGAAGGTAGTTG 60.028 50.000 0.00 0.00 0.00 3.16
2667 2908 2.027469 GGGATTGGTCGAAGGTAGTTGT 60.027 50.000 0.00 0.00 0.00 3.32
2668 2909 3.259902 GGATTGGTCGAAGGTAGTTGTC 58.740 50.000 0.00 0.00 0.00 3.18
2669 2910 3.056035 GGATTGGTCGAAGGTAGTTGTCT 60.056 47.826 0.00 0.00 0.00 3.41
2670 2911 3.655276 TTGGTCGAAGGTAGTTGTCTC 57.345 47.619 0.00 0.00 0.00 3.36
2671 2912 1.891150 TGGTCGAAGGTAGTTGTCTCC 59.109 52.381 0.00 0.00 0.00 3.71
2672 2913 1.135460 GGTCGAAGGTAGTTGTCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
2673 2914 1.538950 GTCGAAGGTAGTTGTCTCCGT 59.461 52.381 0.00 0.00 0.00 4.69
2674 2915 2.030451 GTCGAAGGTAGTTGTCTCCGTT 60.030 50.000 0.00 0.00 0.00 4.44
2675 2916 2.624838 TCGAAGGTAGTTGTCTCCGTTT 59.375 45.455 0.00 0.00 0.00 3.60
2676 2917 3.068590 TCGAAGGTAGTTGTCTCCGTTTT 59.931 43.478 0.00 0.00 0.00 2.43
2677 2918 3.427863 CGAAGGTAGTTGTCTCCGTTTTC 59.572 47.826 0.00 0.00 0.00 2.29
2678 2919 3.022607 AGGTAGTTGTCTCCGTTTTCG 57.977 47.619 0.00 0.00 43.67 3.46
2679 2920 2.363359 AGGTAGTTGTCTCCGTTTTCGT 59.637 45.455 0.00 0.00 42.35 3.85
2680 2921 3.126073 GGTAGTTGTCTCCGTTTTCGTT 58.874 45.455 0.00 0.00 42.35 3.85
2681 2922 3.557185 GGTAGTTGTCTCCGTTTTCGTTT 59.443 43.478 0.00 0.00 42.35 3.60
2682 2923 4.034394 GGTAGTTGTCTCCGTTTTCGTTTT 59.966 41.667 0.00 0.00 42.35 2.43
2683 2924 4.268767 AGTTGTCTCCGTTTTCGTTTTC 57.731 40.909 0.00 0.00 42.35 2.29
2684 2925 3.937079 AGTTGTCTCCGTTTTCGTTTTCT 59.063 39.130 0.00 0.00 42.35 2.52
2685 2926 4.033702 AGTTGTCTCCGTTTTCGTTTTCTC 59.966 41.667 0.00 0.00 42.35 2.87
2686 2927 3.523547 TGTCTCCGTTTTCGTTTTCTCA 58.476 40.909 0.00 0.00 42.35 3.27
2687 2928 3.933955 TGTCTCCGTTTTCGTTTTCTCAA 59.066 39.130 0.00 0.00 42.35 3.02
2688 2929 4.201744 TGTCTCCGTTTTCGTTTTCTCAAC 60.202 41.667 0.00 0.00 42.35 3.18
2689 2930 3.000523 TCTCCGTTTTCGTTTTCTCAACG 59.999 43.478 0.63 0.63 44.29 4.10
2696 2937 2.272678 TCGTTTTCTCAACGACAAGCA 58.727 42.857 5.73 0.00 46.21 3.91
2697 2938 2.029970 TCGTTTTCTCAACGACAAGCAC 59.970 45.455 5.73 0.00 46.21 4.40
2698 2939 2.222931 CGTTTTCTCAACGACAAGCACA 60.223 45.455 0.78 0.00 45.64 4.57
2699 2940 3.098636 GTTTTCTCAACGACAAGCACAC 58.901 45.455 0.00 0.00 0.00 3.82
2700 2941 1.295792 TTCTCAACGACAAGCACACC 58.704 50.000 0.00 0.00 0.00 4.16
2701 2942 0.874175 TCTCAACGACAAGCACACCG 60.874 55.000 0.00 0.00 0.00 4.94
2702 2943 1.831389 CTCAACGACAAGCACACCGG 61.831 60.000 0.00 0.00 0.00 5.28
2703 2944 2.177580 CAACGACAAGCACACCGGT 61.178 57.895 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.854805 GCAAACGAGACAAAAGCTCACC 60.855 50.000 0.00 0.00 32.67 4.02
1 2 2.376032 GCAAACGAGACAAAAGCTCAC 58.624 47.619 0.00 0.00 32.67 3.51
2 3 1.333619 GGCAAACGAGACAAAAGCTCA 59.666 47.619 0.00 0.00 32.67 4.26
3 4 1.335051 GGGCAAACGAGACAAAAGCTC 60.335 52.381 0.00 0.00 0.00 4.09
4 5 0.668535 GGGCAAACGAGACAAAAGCT 59.331 50.000 0.00 0.00 0.00 3.74
5 6 0.318699 GGGGCAAACGAGACAAAAGC 60.319 55.000 0.00 0.00 0.00 3.51
6 7 0.313987 GGGGGCAAACGAGACAAAAG 59.686 55.000 0.00 0.00 0.00 2.27
7 8 0.395862 TGGGGGCAAACGAGACAAAA 60.396 50.000 0.00 0.00 0.00 2.44
8 9 0.178975 ATGGGGGCAAACGAGACAAA 60.179 50.000 0.00 0.00 0.00 2.83
9 10 0.178975 AATGGGGGCAAACGAGACAA 60.179 50.000 0.00 0.00 0.00 3.18
10 11 0.178975 AAATGGGGGCAAACGAGACA 60.179 50.000 0.00 0.00 0.00 3.41
11 12 0.966179 AAAATGGGGGCAAACGAGAC 59.034 50.000 0.00 0.00 0.00 3.36
12 13 1.203001 AGAAAATGGGGGCAAACGAGA 60.203 47.619 0.00 0.00 0.00 4.04
13 14 1.202348 GAGAAAATGGGGGCAAACGAG 59.798 52.381 0.00 0.00 0.00 4.18
14 15 1.253100 GAGAAAATGGGGGCAAACGA 58.747 50.000 0.00 0.00 0.00 3.85
15 16 0.965439 TGAGAAAATGGGGGCAAACG 59.035 50.000 0.00 0.00 0.00 3.60
16 17 2.232208 CTCTGAGAAAATGGGGGCAAAC 59.768 50.000 0.00 0.00 0.00 2.93
17 18 2.158325 ACTCTGAGAAAATGGGGGCAAA 60.158 45.455 12.44 0.00 0.00 3.68
18 19 1.428912 ACTCTGAGAAAATGGGGGCAA 59.571 47.619 12.44 0.00 0.00 4.52
19 20 1.004745 GACTCTGAGAAAATGGGGGCA 59.995 52.381 12.44 0.00 0.00 5.36
20 21 1.004745 TGACTCTGAGAAAATGGGGGC 59.995 52.381 12.44 0.00 0.00 5.80
21 22 2.619074 GGTGACTCTGAGAAAATGGGGG 60.619 54.545 12.44 0.00 0.00 5.40
22 23 2.040278 TGGTGACTCTGAGAAAATGGGG 59.960 50.000 12.44 0.00 0.00 4.96
23 24 3.077359 GTGGTGACTCTGAGAAAATGGG 58.923 50.000 12.44 0.00 0.00 4.00
24 25 4.013267 AGTGGTGACTCTGAGAAAATGG 57.987 45.455 12.44 0.00 31.81 3.16
25 26 5.049818 GTGAAGTGGTGACTCTGAGAAAATG 60.050 44.000 12.44 0.00 33.70 2.32
26 27 5.059833 GTGAAGTGGTGACTCTGAGAAAAT 58.940 41.667 12.44 0.00 33.70 1.82
27 28 4.442706 GTGAAGTGGTGACTCTGAGAAAA 58.557 43.478 12.44 0.00 33.70 2.29
28 29 3.181465 GGTGAAGTGGTGACTCTGAGAAA 60.181 47.826 12.44 0.00 33.70 2.52
29 30 2.365617 GGTGAAGTGGTGACTCTGAGAA 59.634 50.000 12.44 0.00 33.70 2.87
30 31 1.964223 GGTGAAGTGGTGACTCTGAGA 59.036 52.381 12.44 0.00 33.70 3.27
31 32 1.967066 AGGTGAAGTGGTGACTCTGAG 59.033 52.381 2.45 2.45 33.70 3.35
32 33 2.088104 AGGTGAAGTGGTGACTCTGA 57.912 50.000 0.00 0.00 33.70 3.27
33 34 2.353208 GCTAGGTGAAGTGGTGACTCTG 60.353 54.545 0.00 0.00 33.70 3.35
34 35 1.896465 GCTAGGTGAAGTGGTGACTCT 59.104 52.381 0.00 0.00 35.21 3.24
35 36 1.896465 AGCTAGGTGAAGTGGTGACTC 59.104 52.381 0.00 0.00 0.00 3.36
36 37 1.896465 GAGCTAGGTGAAGTGGTGACT 59.104 52.381 0.00 0.00 0.00 3.41
37 38 1.402984 CGAGCTAGGTGAAGTGGTGAC 60.403 57.143 0.00 0.00 0.00 3.67
38 39 0.888619 CGAGCTAGGTGAAGTGGTGA 59.111 55.000 0.00 0.00 0.00 4.02
39 40 0.888619 TCGAGCTAGGTGAAGTGGTG 59.111 55.000 0.00 0.00 0.00 4.17
40 41 1.478510 CATCGAGCTAGGTGAAGTGGT 59.521 52.381 0.00 0.00 0.00 4.16
41 42 1.804372 GCATCGAGCTAGGTGAAGTGG 60.804 57.143 11.70 0.00 41.15 4.00
42 43 1.565305 GCATCGAGCTAGGTGAAGTG 58.435 55.000 11.70 0.00 41.15 3.16
92 93 4.329545 TGGACGGAAGGTGGCTGC 62.330 66.667 0.00 0.00 0.00 5.25
93 94 2.358737 GTGGACGGAAGGTGGCTG 60.359 66.667 0.00 0.00 0.00 4.85
94 95 3.637273 GGTGGACGGAAGGTGGCT 61.637 66.667 0.00 0.00 0.00 4.75
95 96 4.717313 GGGTGGACGGAAGGTGGC 62.717 72.222 0.00 0.00 0.00 5.01
96 97 4.029809 GGGGTGGACGGAAGGTGG 62.030 72.222 0.00 0.00 0.00 4.61
97 98 3.246112 TGGGGTGGACGGAAGGTG 61.246 66.667 0.00 0.00 0.00 4.00
98 99 3.246880 GTGGGGTGGACGGAAGGT 61.247 66.667 0.00 0.00 0.00 3.50
99 100 3.246112 TGTGGGGTGGACGGAAGG 61.246 66.667 0.00 0.00 0.00 3.46
100 101 2.347490 CTGTGGGGTGGACGGAAG 59.653 66.667 0.00 0.00 0.00 3.46
101 102 3.948719 GCTGTGGGGTGGACGGAA 61.949 66.667 0.00 0.00 0.00 4.30
105 106 3.897122 TTGGGCTGTGGGGTGGAC 61.897 66.667 0.00 0.00 0.00 4.02
106 107 3.897122 GTTGGGCTGTGGGGTGGA 61.897 66.667 0.00 0.00 0.00 4.02
107 108 4.994756 GGTTGGGCTGTGGGGTGG 62.995 72.222 0.00 0.00 0.00 4.61
108 109 4.994756 GGGTTGGGCTGTGGGGTG 62.995 72.222 0.00 0.00 0.00 4.61
110 111 3.544503 ATTGGGTTGGGCTGTGGGG 62.545 63.158 0.00 0.00 0.00 4.96
111 112 2.120274 ATTGGGTTGGGCTGTGGG 59.880 61.111 0.00 0.00 0.00 4.61
112 113 2.946346 GCATTGGGTTGGGCTGTGG 61.946 63.158 0.00 0.00 0.00 4.17
113 114 1.756408 TTGCATTGGGTTGGGCTGTG 61.756 55.000 0.00 0.00 0.00 3.66
114 115 1.459158 TTGCATTGGGTTGGGCTGT 60.459 52.632 0.00 0.00 0.00 4.40
115 116 1.004679 GTTGCATTGGGTTGGGCTG 60.005 57.895 0.00 0.00 0.00 4.85
116 117 1.053264 TTGTTGCATTGGGTTGGGCT 61.053 50.000 0.00 0.00 0.00 5.19
117 118 0.036590 ATTGTTGCATTGGGTTGGGC 59.963 50.000 0.00 0.00 0.00 5.36
118 119 2.830923 TCTATTGTTGCATTGGGTTGGG 59.169 45.455 0.00 0.00 0.00 4.12
119 120 3.257873 TGTCTATTGTTGCATTGGGTTGG 59.742 43.478 0.00 0.00 0.00 3.77
120 121 4.517952 TGTCTATTGTTGCATTGGGTTG 57.482 40.909 0.00 0.00 0.00 3.77
121 122 5.018809 AGATGTCTATTGTTGCATTGGGTT 58.981 37.500 0.00 0.00 0.00 4.11
122 123 4.603131 AGATGTCTATTGTTGCATTGGGT 58.397 39.130 0.00 0.00 0.00 4.51
123 124 5.587388 AAGATGTCTATTGTTGCATTGGG 57.413 39.130 0.00 0.00 0.00 4.12
124 125 7.274904 CAGAAAAGATGTCTATTGTTGCATTGG 59.725 37.037 0.00 0.00 0.00 3.16
125 126 8.024865 TCAGAAAAGATGTCTATTGTTGCATTG 58.975 33.333 0.00 0.00 0.00 2.82
126 127 8.114331 TCAGAAAAGATGTCTATTGTTGCATT 57.886 30.769 0.00 0.00 0.00 3.56
127 128 7.609146 TCTCAGAAAAGATGTCTATTGTTGCAT 59.391 33.333 0.00 0.00 0.00 3.96
128 129 6.936335 TCTCAGAAAAGATGTCTATTGTTGCA 59.064 34.615 0.00 0.00 0.00 4.08
129 130 7.369803 TCTCAGAAAAGATGTCTATTGTTGC 57.630 36.000 0.00 0.00 0.00 4.17
130 131 9.604626 GTTTCTCAGAAAAGATGTCTATTGTTG 57.395 33.333 0.00 0.00 0.00 3.33
131 132 9.566432 AGTTTCTCAGAAAAGATGTCTATTGTT 57.434 29.630 0.00 0.00 0.00 2.83
138 139 9.862371 TGTCTATAGTTTCTCAGAAAAGATGTC 57.138 33.333 0.00 0.00 0.00 3.06
161 162 6.016777 TGCTCCTTTTTCTCAGAAAAGATGTC 60.017 38.462 12.35 5.02 45.20 3.06
170 171 4.955811 TGTAGTGCTCCTTTTTCTCAGA 57.044 40.909 0.00 0.00 0.00 3.27
177 178 3.270877 CGGCTAATGTAGTGCTCCTTTT 58.729 45.455 0.00 0.00 0.00 2.27
184 185 1.892391 GGCCCGGCTAATGTAGTGC 60.892 63.158 9.86 0.00 0.00 4.40
208 210 0.818296 ACGAGCAGCCCAGTACTTAG 59.182 55.000 0.00 0.00 0.00 2.18
209 211 0.530744 CACGAGCAGCCCAGTACTTA 59.469 55.000 0.00 0.00 0.00 2.24
210 212 1.293498 CACGAGCAGCCCAGTACTT 59.707 57.895 0.00 0.00 0.00 2.24
211 213 2.650116 CCACGAGCAGCCCAGTACT 61.650 63.158 0.00 0.00 0.00 2.73
212 214 2.125512 CCACGAGCAGCCCAGTAC 60.126 66.667 0.00 0.00 0.00 2.73
213 215 2.283604 TCCACGAGCAGCCCAGTA 60.284 61.111 0.00 0.00 0.00 2.74
214 216 3.699894 CTCCACGAGCAGCCCAGT 61.700 66.667 0.00 0.00 0.00 4.00
215 217 4.463879 CCTCCACGAGCAGCCCAG 62.464 72.222 0.00 0.00 0.00 4.45
218 220 2.388890 ATATGCCTCCACGAGCAGCC 62.389 60.000 0.00 0.00 43.38 4.85
219 221 0.948141 GATATGCCTCCACGAGCAGC 60.948 60.000 0.00 0.00 43.38 5.25
220 222 0.390492 TGATATGCCTCCACGAGCAG 59.610 55.000 0.00 0.00 43.38 4.24
226 228 3.758554 ACTTTGTGTTGATATGCCTCCAC 59.241 43.478 0.00 0.00 0.00 4.02
227 229 4.032960 ACTTTGTGTTGATATGCCTCCA 57.967 40.909 0.00 0.00 0.00 3.86
230 232 6.003950 AGTGTTACTTTGTGTTGATATGCCT 58.996 36.000 0.00 0.00 0.00 4.75
231 233 6.086222 CAGTGTTACTTTGTGTTGATATGCC 58.914 40.000 0.00 0.00 0.00 4.40
246 248 4.652421 TCTCTACAACAACCCAGTGTTACT 59.348 41.667 0.00 0.00 39.73 2.24
247 249 4.952460 TCTCTACAACAACCCAGTGTTAC 58.048 43.478 0.00 0.00 39.73 2.50
248 250 5.454187 CCTTCTCTACAACAACCCAGTGTTA 60.454 44.000 0.00 0.00 39.73 2.41
258 260 1.270625 CCACGGCCTTCTCTACAACAA 60.271 52.381 0.00 0.00 0.00 2.83
267 269 4.379243 CGCTGTCCACGGCCTTCT 62.379 66.667 0.00 0.00 45.16 2.85
488 500 1.819632 GCGGCACACCTTATCTGGG 60.820 63.158 0.00 0.00 0.00 4.45
580 592 4.849310 TGATGGGTTAGCGGGCGC 62.849 66.667 0.00 0.00 42.33 6.53
581 593 2.869503 AAGTGATGGGTTAGCGGGCG 62.870 60.000 0.00 0.00 0.00 6.13
582 594 1.077716 AAGTGATGGGTTAGCGGGC 60.078 57.895 0.00 0.00 0.00 6.13
583 595 0.463833 GGAAGTGATGGGTTAGCGGG 60.464 60.000 0.00 0.00 0.00 6.13
584 596 0.463833 GGGAAGTGATGGGTTAGCGG 60.464 60.000 0.00 0.00 0.00 5.52
634 646 1.226773 GCATTGGATTCCACTGCGC 60.227 57.895 26.28 13.68 46.86 6.09
672 684 1.980784 CTGTGGAGAGATGCTGGGGG 61.981 65.000 0.00 0.00 0.00 5.40
683 695 4.645136 AGTGTAAATAGCGATCTGTGGAGA 59.355 41.667 0.00 0.00 0.00 3.71
687 699 4.508124 GGGAAGTGTAAATAGCGATCTGTG 59.492 45.833 0.00 0.00 0.00 3.66
695 707 4.946784 CACTGTGGGAAGTGTAAATAGC 57.053 45.455 0.00 0.00 42.21 2.97
710 722 2.357517 GGGCCACGAGACACTGTG 60.358 66.667 4.39 6.19 35.87 3.66
728 740 3.198853 AGTCTCAGATAAAAGTCCCTGGC 59.801 47.826 0.00 0.00 0.00 4.85
752 764 2.158460 CCTCCCAAGGACCTGACTTTTT 60.158 50.000 0.00 0.00 46.67 1.94
756 768 4.569214 CCTCCCAAGGACCTGACT 57.431 61.111 0.00 0.00 46.67 3.41
826 838 3.616935 GCGGAATTAAGCGGGAAAC 57.383 52.632 0.00 0.00 0.00 2.78
1034 1046 3.181477 TGGCCATTGGATGCTTTATTTCG 60.181 43.478 0.00 0.00 0.00 3.46
1359 1372 6.540438 AGTATCTACACTTCCCAAAATCGA 57.460 37.500 0.00 0.00 0.00 3.59
1360 1373 7.042658 GCTAAGTATCTACACTTCCCAAAATCG 60.043 40.741 0.00 0.00 39.45 3.34
1383 1397 2.972713 ACAACAGAGGAGAAACTGGCTA 59.027 45.455 0.00 0.00 38.30 3.93
1388 1402 6.151480 GCTACTAGTACAACAGAGGAGAAACT 59.849 42.308 0.00 0.00 0.00 2.66
1409 1423 0.957362 ACCTAATCCGCTACCGCTAC 59.043 55.000 0.00 0.00 0.00 3.58
1428 1442 3.537795 ACTACCACTCCCTAGAACACA 57.462 47.619 0.00 0.00 0.00 3.72
1443 1458 5.008980 CCACCTACCTAGCTACATACTACC 58.991 50.000 0.00 0.00 0.00 3.18
1464 1479 2.702478 CTCATATCAGTTCCTCTGCCCA 59.298 50.000 0.00 0.00 43.32 5.36
1574 1589 1.201965 GCAGATACAGAAGTGCGCAAC 60.202 52.381 14.00 6.79 0.00 4.17
1592 1607 0.323957 ATCAGCACTTGAGCAGAGCA 59.676 50.000 0.00 0.00 41.37 4.26
1593 1608 0.727970 CATCAGCACTTGAGCAGAGC 59.272 55.000 0.00 0.00 39.68 4.09
1594 1609 2.096220 ACATCAGCACTTGAGCAGAG 57.904 50.000 0.00 0.00 39.68 3.35
1595 1610 2.148768 CAACATCAGCACTTGAGCAGA 58.851 47.619 0.00 0.00 39.68 4.26
1596 1611 1.401148 GCAACATCAGCACTTGAGCAG 60.401 52.381 0.00 0.00 39.68 4.24
1650 1665 1.002366 AGCTCAACAATCGACATCGC 58.998 50.000 0.00 0.00 39.60 4.58
1654 1669 3.503827 ATCGTAGCTCAACAATCGACA 57.496 42.857 0.00 0.00 0.00 4.35
1844 1871 2.029649 CCTTGAAGCCACAGGTTGATTG 60.030 50.000 0.00 0.00 32.71 2.67
1851 1878 1.691196 TCAAACCTTGAAGCCACAGG 58.309 50.000 0.00 0.00 36.59 4.00
1945 1972 3.045688 GCTAACACTGAAGCAAACAAGC 58.954 45.455 0.00 0.00 38.63 4.01
1946 1973 4.285292 CAGCTAACACTGAAGCAAACAAG 58.715 43.478 9.73 0.00 41.32 3.16
1991 2022 3.966218 CACTTTGCAAGCGTTAGTGTAAC 59.034 43.478 16.63 0.00 33.34 2.50
1992 2023 3.623960 ACACTTTGCAAGCGTTAGTGTAA 59.376 39.130 25.13 0.00 45.38 2.41
1994 2025 2.014128 ACACTTTGCAAGCGTTAGTGT 58.986 42.857 22.27 22.27 43.21 3.55
1996 2027 1.333619 CCACACTTTGCAAGCGTTAGT 59.666 47.619 0.00 0.00 0.00 2.24
1997 2028 1.333619 ACCACACTTTGCAAGCGTTAG 59.666 47.619 0.00 0.00 0.00 2.34
1998 2029 1.384525 ACCACACTTTGCAAGCGTTA 58.615 45.000 0.00 0.00 0.00 3.18
1999 2030 0.530288 AACCACACTTTGCAAGCGTT 59.470 45.000 0.00 0.00 0.00 4.84
2001 2032 0.100325 TCAACCACACTTTGCAAGCG 59.900 50.000 0.00 0.00 0.00 4.68
2003 2034 2.164219 ACAGTCAACCACACTTTGCAAG 59.836 45.455 0.00 0.00 0.00 4.01
2004 2035 2.166829 ACAGTCAACCACACTTTGCAA 58.833 42.857 0.00 0.00 0.00 4.08
2005 2036 1.832883 ACAGTCAACCACACTTTGCA 58.167 45.000 0.00 0.00 0.00 4.08
2007 2038 4.261572 CCCATAACAGTCAACCACACTTTG 60.262 45.833 0.00 0.00 0.00 2.77
2010 2041 2.814097 GCCCATAACAGTCAACCACACT 60.814 50.000 0.00 0.00 0.00 3.55
2011 2042 1.539827 GCCCATAACAGTCAACCACAC 59.460 52.381 0.00 0.00 0.00 3.82
2012 2043 1.546773 GGCCCATAACAGTCAACCACA 60.547 52.381 0.00 0.00 0.00 4.17
2013 2044 1.173913 GGCCCATAACAGTCAACCAC 58.826 55.000 0.00 0.00 0.00 4.16
2015 2046 2.024414 GATGGCCCATAACAGTCAACC 58.976 52.381 0.00 0.00 0.00 3.77
2016 2047 2.684881 CAGATGGCCCATAACAGTCAAC 59.315 50.000 0.00 0.00 0.00 3.18
2018 2049 2.195727 TCAGATGGCCCATAACAGTCA 58.804 47.619 0.00 0.00 0.00 3.41
2020 2051 3.959495 AATCAGATGGCCCATAACAGT 57.041 42.857 0.00 0.00 0.00 3.55
2021 2052 4.978099 ACTAATCAGATGGCCCATAACAG 58.022 43.478 0.00 0.00 0.00 3.16
2072 2302 4.093703 CGACAGTCAACCACACTTTACAAA 59.906 41.667 0.41 0.00 0.00 2.83
2076 2306 2.828877 CCGACAGTCAACCACACTTTA 58.171 47.619 0.41 0.00 0.00 1.85
2127 2361 2.762327 TCGCCCGTATTAACTCTCCTTT 59.238 45.455 0.00 0.00 0.00 3.11
2165 2399 4.142315 CCACATTAACTGCATCTTCAAGGG 60.142 45.833 0.00 0.00 0.00 3.95
2166 2400 4.142315 CCCACATTAACTGCATCTTCAAGG 60.142 45.833 0.00 0.00 0.00 3.61
2346 2587 3.749226 GTGATCTCCCATCCTCCATTTC 58.251 50.000 0.00 0.00 0.00 2.17
2356 2597 1.816537 CGTCACCGTGATCTCCCAT 59.183 57.895 4.13 0.00 0.00 4.00
2357 2598 3.001902 GCGTCACCGTGATCTCCCA 62.002 63.158 4.13 0.00 36.15 4.37
2358 2599 2.202756 GCGTCACCGTGATCTCCC 60.203 66.667 4.13 0.00 36.15 4.30
2374 2615 0.744771 GGATCCTGGAAACTGTCGGC 60.745 60.000 3.84 0.00 0.00 5.54
2389 2630 3.366476 CGTTCGTCCATAGGATCTGGATC 60.366 52.174 5.54 2.24 44.34 3.36
2390 2631 2.558795 CGTTCGTCCATAGGATCTGGAT 59.441 50.000 5.54 0.00 44.34 3.41
2394 2635 1.602851 CGTCGTTCGTCCATAGGATCT 59.397 52.381 0.00 0.00 32.73 2.75
2400 2641 0.095245 GTCGTCGTCGTTCGTCCATA 59.905 55.000 1.33 0.00 40.80 2.74
2404 2645 1.852351 CTCGTCGTCGTCGTTCGTC 60.852 63.158 11.41 6.26 40.80 4.20
2408 2649 4.731503 CGGCTCGTCGTCGTCGTT 62.732 66.667 11.41 0.00 35.63 3.85
2444 2685 2.202797 CTCACGGGCCATCGACTG 60.203 66.667 4.39 0.00 0.00 3.51
2447 2688 3.770040 CACCTCACGGGCCATCGA 61.770 66.667 4.39 0.00 39.10 3.59
2448 2689 3.723235 CTCACCTCACGGGCCATCG 62.723 68.421 4.39 1.48 39.10 3.84
2452 2693 4.394712 CACCTCACCTCACGGGCC 62.395 72.222 0.00 0.00 39.10 5.80
2501 2742 3.562557 TCCACTCGGAAGTTTAAAACTGC 59.437 43.478 0.00 0.00 41.91 4.40
2515 2756 3.079578 TGTAGACTACACTTCCACTCGG 58.920 50.000 11.37 0.00 32.89 4.63
2516 2757 3.426426 GCTGTAGACTACACTTCCACTCG 60.426 52.174 11.37 0.33 34.46 4.18
2518 2759 3.768878 AGCTGTAGACTACACTTCCACT 58.231 45.455 11.37 0.54 34.46 4.00
2526 2767 4.700692 CCTCACTTGTAGCTGTAGACTACA 59.299 45.833 14.53 14.53 46.23 2.74
2527 2768 4.701171 ACCTCACTTGTAGCTGTAGACTAC 59.299 45.833 5.62 5.62 40.37 2.73
2528 2769 4.919793 ACCTCACTTGTAGCTGTAGACTA 58.080 43.478 0.00 0.00 0.00 2.59
2529 2770 3.768878 ACCTCACTTGTAGCTGTAGACT 58.231 45.455 0.00 0.00 0.00 3.24
2530 2771 4.022242 TGAACCTCACTTGTAGCTGTAGAC 60.022 45.833 0.00 0.00 0.00 2.59
2531 2772 4.149598 TGAACCTCACTTGTAGCTGTAGA 58.850 43.478 0.00 0.00 0.00 2.59
2532 2773 4.489810 CTGAACCTCACTTGTAGCTGTAG 58.510 47.826 0.00 0.00 0.00 2.74
2533 2774 3.306088 GCTGAACCTCACTTGTAGCTGTA 60.306 47.826 0.00 0.00 0.00 2.74
2534 2775 2.548920 GCTGAACCTCACTTGTAGCTGT 60.549 50.000 0.00 0.00 0.00 4.40
2535 2776 2.072298 GCTGAACCTCACTTGTAGCTG 58.928 52.381 0.00 0.00 0.00 4.24
2536 2777 1.974236 AGCTGAACCTCACTTGTAGCT 59.026 47.619 0.00 0.00 35.40 3.32
2537 2778 2.464157 AGCTGAACCTCACTTGTAGC 57.536 50.000 0.00 0.00 0.00 3.58
2538 2779 2.989840 CGAAGCTGAACCTCACTTGTAG 59.010 50.000 0.00 0.00 0.00 2.74
2539 2780 3.026630 CGAAGCTGAACCTCACTTGTA 57.973 47.619 0.00 0.00 0.00 2.41
2540 2781 1.871080 CGAAGCTGAACCTCACTTGT 58.129 50.000 0.00 0.00 0.00 3.16
2560 2801 1.469940 CGGTAGTGGAAGCTGCAGTAG 60.470 57.143 16.64 0.00 0.00 2.57
2561 2802 0.530744 CGGTAGTGGAAGCTGCAGTA 59.469 55.000 16.64 0.00 0.00 2.74
2562 2803 1.293498 CGGTAGTGGAAGCTGCAGT 59.707 57.895 16.64 0.00 0.00 4.40
2563 2804 0.530744 TACGGTAGTGGAAGCTGCAG 59.469 55.000 10.11 10.11 0.00 4.41
2564 2805 0.970640 TTACGGTAGTGGAAGCTGCA 59.029 50.000 1.02 0.00 0.00 4.41
2565 2806 1.933853 CATTACGGTAGTGGAAGCTGC 59.066 52.381 2.96 0.00 0.00 5.25
2566 2807 3.520290 TCATTACGGTAGTGGAAGCTG 57.480 47.619 10.29 0.00 0.00 4.24
2567 2808 5.138276 TCTATCATTACGGTAGTGGAAGCT 58.862 41.667 10.29 0.00 0.00 3.74
2568 2809 5.241064 TCTCTATCATTACGGTAGTGGAAGC 59.759 44.000 10.29 0.00 0.00 3.86
2569 2810 6.879276 TCTCTATCATTACGGTAGTGGAAG 57.121 41.667 10.29 8.27 0.00 3.46
2570 2811 6.433404 GGATCTCTATCATTACGGTAGTGGAA 59.567 42.308 10.29 0.00 33.41 3.53
2571 2812 5.944599 GGATCTCTATCATTACGGTAGTGGA 59.055 44.000 10.29 1.03 33.41 4.02
2572 2813 5.710567 TGGATCTCTATCATTACGGTAGTGG 59.289 44.000 10.29 0.00 33.41 4.00
2573 2814 6.819397 TGGATCTCTATCATTACGGTAGTG 57.181 41.667 4.43 4.43 33.41 2.74
2574 2815 6.603997 GGATGGATCTCTATCATTACGGTAGT 59.396 42.308 5.98 0.00 35.80 2.73
2575 2816 6.603599 TGGATGGATCTCTATCATTACGGTAG 59.396 42.308 5.98 0.00 35.80 3.18
2576 2817 6.490492 TGGATGGATCTCTATCATTACGGTA 58.510 40.000 5.98 0.00 35.80 4.02
2577 2818 5.333581 TGGATGGATCTCTATCATTACGGT 58.666 41.667 5.98 0.00 35.80 4.83
2578 2819 5.921962 TGGATGGATCTCTATCATTACGG 57.078 43.478 5.98 0.00 35.80 4.02
2579 2820 7.429633 GGTATGGATGGATCTCTATCATTACG 58.570 42.308 5.98 0.00 35.80 3.18
2580 2821 7.068839 ACGGTATGGATGGATCTCTATCATTAC 59.931 40.741 5.98 6.34 35.80 1.89
2581 2822 7.126061 ACGGTATGGATGGATCTCTATCATTA 58.874 38.462 5.98 0.00 35.80 1.90
2582 2823 5.960811 ACGGTATGGATGGATCTCTATCATT 59.039 40.000 5.98 0.00 35.80 2.57
2583 2824 5.523588 ACGGTATGGATGGATCTCTATCAT 58.476 41.667 5.98 1.57 35.80 2.45
2584 2825 4.935578 ACGGTATGGATGGATCTCTATCA 58.064 43.478 5.98 0.00 35.80 2.15
2585 2826 6.123651 AGTACGGTATGGATGGATCTCTATC 58.876 44.000 0.00 0.00 33.67 2.08
2586 2827 6.080969 AGTACGGTATGGATGGATCTCTAT 57.919 41.667 0.00 0.00 0.00 1.98
2587 2828 5.013808 TGAGTACGGTATGGATGGATCTCTA 59.986 44.000 0.00 0.00 0.00 2.43
2588 2829 4.202577 TGAGTACGGTATGGATGGATCTCT 60.203 45.833 0.00 0.00 0.00 3.10
2589 2830 4.079970 TGAGTACGGTATGGATGGATCTC 58.920 47.826 0.00 0.00 0.00 2.75
2590 2831 4.114015 TGAGTACGGTATGGATGGATCT 57.886 45.455 0.00 0.00 0.00 2.75
2591 2832 4.748892 CATGAGTACGGTATGGATGGATC 58.251 47.826 0.00 0.00 0.00 3.36
2592 2833 3.055819 GCATGAGTACGGTATGGATGGAT 60.056 47.826 0.00 0.00 0.00 3.41
2593 2834 2.299013 GCATGAGTACGGTATGGATGGA 59.701 50.000 0.00 0.00 0.00 3.41
2594 2835 2.300152 AGCATGAGTACGGTATGGATGG 59.700 50.000 0.00 0.00 0.00 3.51
2595 2836 3.667497 AGCATGAGTACGGTATGGATG 57.333 47.619 0.00 0.00 0.00 3.51
2596 2837 3.244215 CCAAGCATGAGTACGGTATGGAT 60.244 47.826 0.00 0.00 0.00 3.41
2597 2838 2.102420 CCAAGCATGAGTACGGTATGGA 59.898 50.000 0.00 0.00 0.00 3.41
2598 2839 2.483876 CCAAGCATGAGTACGGTATGG 58.516 52.381 0.00 0.00 0.00 2.74
2599 2840 2.483876 CCCAAGCATGAGTACGGTATG 58.516 52.381 0.00 3.59 0.00 2.39
2600 2841 1.202651 GCCCAAGCATGAGTACGGTAT 60.203 52.381 0.00 0.00 39.53 2.73
2601 2842 0.177141 GCCCAAGCATGAGTACGGTA 59.823 55.000 0.00 0.00 39.53 4.02
2602 2843 1.078426 GCCCAAGCATGAGTACGGT 60.078 57.895 0.00 0.00 39.53 4.83
2603 2844 0.392998 AAGCCCAAGCATGAGTACGG 60.393 55.000 0.00 0.00 43.56 4.02
2604 2845 1.453155 AAAGCCCAAGCATGAGTACG 58.547 50.000 0.00 0.00 43.56 3.67
2605 2846 3.942130 AAAAAGCCCAAGCATGAGTAC 57.058 42.857 0.00 0.00 43.56 2.73
2626 2867 5.738909 TCCCAAACATGAGCTTTTCAAAAA 58.261 33.333 0.00 0.00 39.77 1.94
2627 2868 5.350504 TCCCAAACATGAGCTTTTCAAAA 57.649 34.783 0.00 0.00 39.77 2.44
2628 2869 5.549742 ATCCCAAACATGAGCTTTTCAAA 57.450 34.783 0.00 0.00 39.77 2.69
2629 2870 5.299148 CAATCCCAAACATGAGCTTTTCAA 58.701 37.500 0.00 0.00 39.77 2.69
2630 2871 4.262549 CCAATCCCAAACATGAGCTTTTCA 60.263 41.667 0.00 0.00 40.85 2.69
2631 2872 4.248058 CCAATCCCAAACATGAGCTTTTC 58.752 43.478 0.00 0.00 0.00 2.29
2632 2873 3.647590 ACCAATCCCAAACATGAGCTTTT 59.352 39.130 0.00 0.00 0.00 2.27
2633 2874 3.242011 ACCAATCCCAAACATGAGCTTT 58.758 40.909 0.00 0.00 0.00 3.51
2634 2875 2.827921 GACCAATCCCAAACATGAGCTT 59.172 45.455 0.00 0.00 0.00 3.74
2635 2876 2.450476 GACCAATCCCAAACATGAGCT 58.550 47.619 0.00 0.00 0.00 4.09
2636 2877 1.133025 CGACCAATCCCAAACATGAGC 59.867 52.381 0.00 0.00 0.00 4.26
2637 2878 2.710377 TCGACCAATCCCAAACATGAG 58.290 47.619 0.00 0.00 0.00 2.90
2638 2879 2.869101 TCGACCAATCCCAAACATGA 57.131 45.000 0.00 0.00 0.00 3.07
2639 2880 2.164219 CCTTCGACCAATCCCAAACATG 59.836 50.000 0.00 0.00 0.00 3.21
2640 2881 2.225017 ACCTTCGACCAATCCCAAACAT 60.225 45.455 0.00 0.00 0.00 2.71
2641 2882 1.144093 ACCTTCGACCAATCCCAAACA 59.856 47.619 0.00 0.00 0.00 2.83
2642 2883 1.905637 ACCTTCGACCAATCCCAAAC 58.094 50.000 0.00 0.00 0.00 2.93
2643 2884 2.640826 ACTACCTTCGACCAATCCCAAA 59.359 45.455 0.00 0.00 0.00 3.28
2644 2885 2.262637 ACTACCTTCGACCAATCCCAA 58.737 47.619 0.00 0.00 0.00 4.12
2645 2886 1.946984 ACTACCTTCGACCAATCCCA 58.053 50.000 0.00 0.00 0.00 4.37
2646 2887 2.027469 ACAACTACCTTCGACCAATCCC 60.027 50.000 0.00 0.00 0.00 3.85
2647 2888 3.056035 AGACAACTACCTTCGACCAATCC 60.056 47.826 0.00 0.00 0.00 3.01
2648 2889 4.174762 GAGACAACTACCTTCGACCAATC 58.825 47.826 0.00 0.00 0.00 2.67
2649 2890 3.056035 GGAGACAACTACCTTCGACCAAT 60.056 47.826 0.00 0.00 0.00 3.16
2650 2891 2.298163 GGAGACAACTACCTTCGACCAA 59.702 50.000 0.00 0.00 0.00 3.67
2651 2892 1.891150 GGAGACAACTACCTTCGACCA 59.109 52.381 0.00 0.00 0.00 4.02
2652 2893 1.135460 CGGAGACAACTACCTTCGACC 60.135 57.143 0.00 0.00 0.00 4.79
2653 2894 1.538950 ACGGAGACAACTACCTTCGAC 59.461 52.381 0.00 0.00 0.00 4.20
2654 2895 1.901591 ACGGAGACAACTACCTTCGA 58.098 50.000 0.00 0.00 0.00 3.71
2655 2896 2.719426 AACGGAGACAACTACCTTCG 57.281 50.000 0.00 0.00 0.00 3.79
2656 2897 3.427863 CGAAAACGGAGACAACTACCTTC 59.572 47.826 0.00 0.00 0.00 3.46
2657 2898 3.181472 ACGAAAACGGAGACAACTACCTT 60.181 43.478 0.00 0.00 0.00 3.50
2658 2899 2.363359 ACGAAAACGGAGACAACTACCT 59.637 45.455 0.00 0.00 0.00 3.08
2659 2900 2.747436 ACGAAAACGGAGACAACTACC 58.253 47.619 0.00 0.00 0.00 3.18
2660 2901 4.783959 AAACGAAAACGGAGACAACTAC 57.216 40.909 0.00 0.00 0.00 2.73
2661 2902 5.111293 AGAAAACGAAAACGGAGACAACTA 58.889 37.500 0.00 0.00 0.00 2.24
2662 2903 3.937079 AGAAAACGAAAACGGAGACAACT 59.063 39.130 0.00 0.00 0.00 3.16
2663 2904 4.201744 TGAGAAAACGAAAACGGAGACAAC 60.202 41.667 0.00 0.00 0.00 3.32
2664 2905 3.933955 TGAGAAAACGAAAACGGAGACAA 59.066 39.130 0.00 0.00 0.00 3.18
2665 2906 3.523547 TGAGAAAACGAAAACGGAGACA 58.476 40.909 0.00 0.00 0.00 3.41
2666 2907 4.269312 GTTGAGAAAACGAAAACGGAGAC 58.731 43.478 0.00 0.00 0.00 3.36
2667 2908 3.000523 CGTTGAGAAAACGAAAACGGAGA 59.999 43.478 4.69 0.00 45.64 3.71
2668 2909 3.277481 CGTTGAGAAAACGAAAACGGAG 58.723 45.455 4.69 0.00 45.64 4.63
2669 2910 3.307339 CGTTGAGAAAACGAAAACGGA 57.693 42.857 4.69 0.00 45.64 4.69
2677 2918 2.222931 TGTGCTTGTCGTTGAGAAAACG 60.223 45.455 4.31 4.31 44.29 3.60
2678 2919 3.098636 GTGTGCTTGTCGTTGAGAAAAC 58.901 45.455 0.00 0.00 0.00 2.43
2679 2920 2.096819 GGTGTGCTTGTCGTTGAGAAAA 59.903 45.455 0.00 0.00 0.00 2.29
2680 2921 1.668751 GGTGTGCTTGTCGTTGAGAAA 59.331 47.619 0.00 0.00 0.00 2.52
2681 2922 1.295792 GGTGTGCTTGTCGTTGAGAA 58.704 50.000 0.00 0.00 0.00 2.87
2682 2923 0.874175 CGGTGTGCTTGTCGTTGAGA 60.874 55.000 0.00 0.00 0.00 3.27
2683 2924 1.564622 CGGTGTGCTTGTCGTTGAG 59.435 57.895 0.00 0.00 0.00 3.02
2684 2925 1.885388 CCGGTGTGCTTGTCGTTGA 60.885 57.895 0.00 0.00 0.00 3.18
2685 2926 2.177580 ACCGGTGTGCTTGTCGTTG 61.178 57.895 6.12 0.00 0.00 4.10
2686 2927 2.177580 CACCGGTGTGCTTGTCGTT 61.178 57.895 26.95 0.00 35.31 3.85
2687 2928 2.587753 CACCGGTGTGCTTGTCGT 60.588 61.111 26.95 0.00 35.31 4.34
2688 2929 2.279851 TCACCGGTGTGCTTGTCG 60.280 61.111 32.74 5.39 42.46 4.35
2689 2930 0.814010 AAGTCACCGGTGTGCTTGTC 60.814 55.000 31.01 17.46 42.46 3.18
2690 2931 1.095228 CAAGTCACCGGTGTGCTTGT 61.095 55.000 37.06 22.65 43.64 3.16
2691 2932 1.648720 CAAGTCACCGGTGTGCTTG 59.351 57.895 35.52 35.52 43.41 4.01
2692 2933 2.186826 GCAAGTCACCGGTGTGCTT 61.187 57.895 30.91 29.55 42.46 3.91
2693 2934 2.591715 GCAAGTCACCGGTGTGCT 60.592 61.111 30.91 26.63 42.46 4.40
2694 2935 2.477176 TTGCAAGTCACCGGTGTGC 61.477 57.895 31.29 31.29 42.46 4.57
2695 2936 3.820590 TTGCAAGTCACCGGTGTG 58.179 55.556 32.74 24.42 44.18 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.