>input_sequence_70954
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---------------------------------------------------TTTCAAAACAAGGAAGGCCAAAATTTCTC
CCCCCCGAAAT-AAAGCATCCAATGGCCATGGAGAGCGGCGCTGAGGCGGCGGCGGCGGCGGCGGCGGGCTACTACGGCG
GCAACTGCGGGTGGGAGACGCCGAAGCGGGAGGAGTGCCGCATCCCGGCGACGCTGCCCTGCCCCGCGGCGCCGAGGAAG
GCGGCAGCGGACTTCGGCACGCCCCGGCGCCCGCCCAAGAACGGCTACTTCCAGCCACCGGACCTCGAGGCCCTCTTCGC
GCTCGCCCCGCGCCGGCAGGCGTCTTGCGCGTGATTCTGCCCGCTTCGGCGGCGGCACGCGGCGGCCGGCCGCGGAGGGC
TCTGTTTTGGGTC-GATTTTGGGAAGTGTAGATACTTAGCCAGTTTCTCCTCTGTTGTACTAGTAGCGGTAGCGGATTAG
GTG-TGTTCTAGGGAGTGGTAGTATGTAGCTAGGTAGGTGGGCAGAGGAACTGATATGAGCGGGGAGCTGATGAGCATAT
GGTTTTTGTATCGGCTGGAATGAGAAATCCTTATTTGTTTCTTGGCACTGATGCGACTCTGCTTGCTTGTTGCGCACTTC
TGTATCTGCTCTGCTCAAGTGCTGATGTTGCTGAAGTTCTGATGTTGTTCTTCATGATGCCATTGCGATGTCGATTGTTG
AGCTACGATTAATTTTTACTGCAAAGAATCCAAGGTCAATAATGGCG---------------------------------
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>chr3D_1_TraesCS3D01G354800
GGTGAGCTTTTGTCTCGTTTGCCCCCATTTTCTCAGAGTCACCACTTCACCTAGCTCGATGCTACGCGCGGCACTGCCCT
CGCTCGGCGGCGGCAGCCACCTTCCGTCCACCCCACAGCCCAACCCAATGCAACAATAGACATCTTTTCTGAGAAACTAT
AGACATCTTTTCTGAGAAAAAGGAGCA-CTACATTAGCCGGGCCGTATACTAAGTACTGGGCTGCTCGTGGAGGCATATC
AACACAAAGTAACACTGGGTTGTTGTAGAGAAGGCC-GTGGACAGCGCCGGGCCCACCAAGCGGGGAACCGTCACGCAT-
-GGGGTCAACGCGCAGAGCTGCCGTTTCACACGAGACCGTCCAAGCTCCTTCCGGCGCGGGGCCCACGCGGCCCGGGAAT
CCGAGGCGGAAGGGATCATTCCAACAGTCGGAAATCGCGAAG-------CCCCCCGCGCCCGGTCTTTCATGGACCACAC
CGCGGACCCACCGCACAGCCCCAGATAAGGTGTGCCGCGGCGCGCGGCGCACCGAGGACCCCGACCAGGTCGCGTGACGG
GGTCGTGGGTACGCGCGGGCCCACCGCGCCGGCGCCCGCTAACCCATCACTTCCCCGTACACCTGGCGCCCTACAGCCCG
CCGTAGCGCAGTGGAATCCAATGCGGCATATCCCCACAAACTTCCCCCAGCATCTCTCCACAGATCGCTATTTACACTTC
CCACAGTGTCTCGTGGCCCGCCAGGGACTTTTATCTGAGACTGAAAAAGTCAGGTCCTTGGGAGGAAGAGTTTTAAATCG
AACAGTGGCTCGCGGTTTCCCGCCCACTTGGCGCGCAGTTTCCCGCTTAATTCCGCGCCGGCGGATCGGAGGGACGGGAG
GCGGCCACGTCACCGATCCCGCCCCGCCTTCCCCCGCACGGCGCCGTCCGTTGGAAGGCGGGGATCCTCTCGCCGCGGGC
GCGTCCATTATAAGCCGCCCCTGCCCACGACGCTTCCCTCCCAAATTCCCCTTTCAAAACAAGGAAGGCCAAAATTTCTC
CCCCCCGAAAT-AAAGCATCCAATGGCCATGGAGAGCGGCGCTGAGGCGGCGGCGGCGGCGGCGGCGGGCTACTACGGCG
GCAACTGCGGGTGGGAGACGCCGAAGCGGGAGGAGTGCCGCATCCCGGCGACGCTGCCCTGCCCCGCGGCGCCGAGGAAG
GCGGCAGCGGACTTCGGCACGCCCCGGCGCCCGCCCAAGAACGGCTACTTCCAGCCACCGGACCTCGAGGCCCTCTTCGC
GCTCGCCCCGCGCCGGCAGGCGTCTTGCGCGTGATTCTGCCCGCTTCGGCGGCGGCACGCGGCGGCCGGCCGCGGAGGGC
TCTGTTTTGGGTC-GATTTTGGGAAGTGTAGATACTTAGCCAGTTTCTCCTCTGTTGTACTAGTAGCGGTAGCGGATTAG
GTG-TGTTCTAGGGAGTGGTAGTATGTAGCTAGGTAGGTGGGCAGAGGAACTGATATGAGCGGGGAGCTGATGAGCATAT
GGTTTTTGTATCGGCTGGAATGAGAAATCCTTATTTGTTTCTTGGCACTGATGCGACTCTGCTTGCTTGTTGCGCACTTC
TGTATCTGCTCTGCTCAAGTGCTGATGTTGCTGAAGTTCTGATGTTGTTCTTCATGATGCCATTGCGATGTCGATTGTTG
AGCTACGATTAATTTTTACTGCAAAGAATCCAAGGTCAATAATGGCGGCC---------ACTGTAAGCTGAATGCG---G
CTGCTGACCCTGTGCGGTCGGCTCCTCACAGAGGGAAGCGTCGCTGTATGCACTGCATGCCAGTGATTTCTTGCTTTGCT
TCCATGCGAGGCATCTGACGGTGTGATCACCAATCAACCTGTGGCTTCAAGGTTTGAAATGCCTCCTGTCCAGGCTGCAA
TCAGAAACCACAGTGCAGTGACTCGATCCCACAGTGCCTCCACTGTTCGTAGCTT----GTTTGCTTCAGTGTTAGCTGG
GCCAGCTGATTAATGTTAGGAGTTACACTAACGCTTGCAAAGTGTGGTTGACTG--------------------------
-----------TTATGGGCCATCTGATTAGTAGGAGTACTAGTAGGAGTTA-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CACTAACGTTTGTAAAGTGTGGTTGAC
TGTCGG----CACTGTGCCGCTGTTTTGTTTTGTTTTGCCAAAGGAGAGTTAATACGGGCGACATGAAGCAGTGCGTGCC
CTTGAAGATGCAGTTAATGTGGGTGT--GTGTGGGAGATCCGGCAGCATGATGTGGCTTTCTTCGCCTCGCATGCCTGCC
TCCTAGCGGCTAT-----GCGTATTGCAATGCGAGGTGTGTGGCCGTGCGTGTGACTAGTGTCAGGGCTTCATTCAGAAC
AACACCCCGTGGTCCTGAAACTGAAAGAAATGGAGGATGGGAGATCACGGTGACGCCGACAGTTTCCAGGATCCAGATCC
TATGGACGAACGACGACGACGAGCCGACGCCGCCGCCCGCCGGGCAGTCGATGGCCCGTGAGGTGAGGTGGCCCGCGCGG
CAGCGACAGAGAGAAGGAGAGGCAGTTTTAAACTTCCGAGTGGAAGTGTAGTCTACAGCTACAAGTGAGGTTCAGCTTCG
CTACTGCAGCTTCCACTACCGTAATGATAGAGATCCATCCATACCGTACTCATGCTTGGGCTTTTTTTTTTGAAAAGCTC
ATGTTTGGGATTGGTCGAAGGTAGTTGTCTCCGTTTTCGTTTTCTCAACGACAAGCACACCGGTGACTTGCAA
>chr3A_159
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------------------------------------------------------------------------------AT
AAACATCTTTCCTGAGAGAAAGGAACACCTACATTAGCCGGGCCGTATA-------------TGCTCCCGGTTGCATATC
AACACAAGC-AACACTGGGCTGTTGTAGGAAAGGCCTGTGGACAGAGCCGGGCCCACCAAGGGGGGAACCGTCACGCAT-
-GGGGTCAACGCGCAGAGCTGCCGTTTCACACGAGACCGTCCAAGCTCCTTCCACCGCGGGGCCCACGCGGCCCGGGAAT
CCGAGGCGGAAGGGATCATTCCAACAGTCGGAAATCGCGAC------CCCCCCCCGCGCCCGGTCTTTCATGGACCACGC
CGCGGACCCACCGCACAGCGCCAGACAAGGTGCGCCGCGGCGCGCGGCGCACCGAGGACCCCGACCAGGTCGCGTGACGG
GGTCGTGGGTACGCGCGGGCCCACCGCGCC------CGCTAACCCATCACTTCCCCGTACACCTGGCGCCCTACAGCCCG
CCGTAACGCAGTGGAATCCAATGCGGCATATCCCCACAAACTTACCCCACCATCCCTTTACAGATCATTTTTTGCACAAA
ATACCTAACATTGTGGCCCACCAGGGGCATATATGTGAGAGTGGAAACCTCAGGTCCCTGGGAGGAAGAGTTTTAAATCG
AACAGTGGCCCGCGGTTTCCCGCCCACTTGGCGCGCAATTTCCCGCTTAATTCCGCGCCGGCGGATCGGAGGGACGGGAG
GCGGCCACGTCACCGATCCCGCCCCGCCTTCCCCCGCACGGCGCCGTCCGTTGGGAGGCGGGGATCCTCCCGCCGCGGGC
GCGCCCGTTATAAGCCGCCCCCGCCCACGACGCTTCCCTCCCAAATTCCCCTTTGAAAACAAGGAAGCCCAAAATTTCTC
CCCCC-GAAATAAAAGCATCCAATGGCCATGGAGAGCGGCT------CGGAGGCGGCGGCGGCGGCGGGCTACTACGGCG
GCACCTGCGGGTGGGAGACGCCGAAGCGGGAGGAGTGCCGCATCCTGGCGACGCTGCCCTGCCCCGCGGCGCCGAGGAAG
GCCGCGGCCGACTTCGGCACGCCCCGGCGCCCGCCCAAGAACGGCTACTTCCAGCCGCCGGACCTCGAGGCCCTCTTCGC
GCTCGCCCCGCGCCGGCAGGCCTCGTGCGCGTGATTCGGCCCGCTCCGAA---GGCATGCGGCGG----------AGAGC
TGTGTTTT-GGATTGATTTTGGGAAGTGTAGATACTCAGCCGGTTTCTCCTCTGTTGTACTATTAGCGGTAGCGGATTAG
GGGGTGTTCTAGGGGGTAGTAGTATGTAGCTAGGTAGGCGGGCAGAGGAACTGATATGGGCTGGGAGCTGATGAGCATAT
GGTTTTTGTATCGGCTGGAATGAGAAATCCTTATTTGTTTCTTGGCACTGATGTCACTCTGCTTGCTTATTGCGCACTTC
TGTATCC-----GCTCAAGTGCTGATGTTGCTGAAGTTCTGACGTTGTTCTTCATGATGCCATCACGACGTCGATTGTTG
AGCTACGATTAATTTTCACTGCAAAGAATCCAAGGTCAATAATGGCGGCC---------ACTGTAAGCTGAATGCG---G
CCGCTGACCCTGTGCGGCCGGCTCCTCACGGAGGGAACCGTCGCTGTATGCACTGCATGCCAGTGATTTCTTGCTTGGCT
TCCATGCGAGGCATCAGACGGTGTGACCACGAATCAAGCTGTAGCTTCAAGGTTTGAAATGCCTCCTGTCCAGCCTGCAA
TCAGAAACCACAGTGCAGTGACTCGATCCCACAGTGCCTCCACTGTTCGTACTTTGTTCGTTTGCTTCAGTGTTTTGGC-
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----------CTTATGGGCCATCTGATTAGTACTAGCAT---TAGGAGTTA-----------------------------
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-----------------------------------------------------CACTAACGCTTGCAAAGTGTGGTTGAC
TGTCGG----CACTGTGCCGCTGTTTTGTTTTGTTTTGCC-AAGGAGAGTTAATACGGGCGACATGAAGCAGTGCGCGGT
CTTGAAGACGCAGTTAATGTGGGTGCGGGTGTGGGAGATCCGGCAGCATGATGTGGCTTTCTTCGCCTCGCATGCCCGCC
TGCCTGCCTCCTGGTGAAGCGTATTGCAATGCGAGGTGTGTGGCCGTGCGTGTGACCGGTGTCAAGGCTTCATTCAG---
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>chr3B_274
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----------------------------------CC-GTGGACAGCGCTGGGCCCACTGAGGGGG-AACCGTCATGTATG
GGGGGTCAACGCGCAGAGCTGCCGTTTCACACGAGACCGTCCAAGCTCCTTCCGGCGCGGGGCCCACGCGGCCCGGGAAT
CCGAGGCGGAAGGGATCATCCCAACAGTCGGAAATCGCGACTCCCCCCCCCCCCCGCGCCCGGTCTTTCATGGACCACAC
CGCGGACCCACTGCACAGCGCCAGACATGGTGTGCCGCGGCGCGCGGCGCACCGAGGACCCCGACCAGGTCGCGTGACGG
AGTCGTGGGTACGCGCGGGCCCACCGCGCC------CGCTAACCCATCACTT-CCCGTACACCTGGCGCCCTACAGCCCG
CCGTAACGCAGTGGAATCCAATGCGGCATATCCCCACAAACTTGCCTCTGTACCCTTCGAGAAATGTTTATTCGCACAAA
ATACCTAACCTTGTGGCCCACCAAGGGCCTATGTGGAATAATCGAAACCTCAGGTCCTTGGGAGGAAGAGTTTTAAATCG
AACAGTGGCTCGCGGTTTCCCGCCCACTTGGCGCGCAATTTCCCGCTTAATTCCGCGCCGAGGGATCAGAGGGACGGGAG
GCGGCCACGTCACCGATCCCGCCCCTCCTTCCCCCGCACGGCGCCGTCCGTTGGAAGGCGGGGATCCTCCCGCCGCGGGC
GCGTCCATTATAAGCCGCCCCTGCCCACGACACTTCCCTCCCAAATTCCCCTTTCAAAACAAGGAAGGCCAAAATTTCTC
CCCCC-GAAAT-AAAGCATCCAATGGCCATGGAGAGCGGCGCAGAGGCC---GCGGCGGCGGCGGCGGGCTACTACGGCG
GCACCTGCGGGTGGGAGACGCCGAAGCGGGAGGAGTGCCGCATCCCGGCGACGCTGCCCTGCCCCGCGGCGCCGAGGAAG
GCCGCCGCGGACTTCGGCACGCCCCGGCGTCCGCCCAAGAACGGCTACTTCCAGCCGCCTGACCTCGAGGCCCTCTTTGC
GCTGGCCCCGCGCCGGCAGGCGTCTTGCGCGTGATTCTGCCCGCTTCGGCGGCGA----CGGCGGCCGGCCGCGGAGGGC
TCTGTTTTGGGATTGATTTTGGGAAGTGTAGATACTCAGCCGGTTTCTCCTCTGTTGTACTATTAGCGGTAGCGGATTAG
GGG-TGTTCTAGGGAGCAGTAGTATGTAGCTAGGTAGGCGGGCAGGGGAACTGATATGAGCGGGGAGCTGATGAGCATAT
GGTTTTTGTATCGGCTGGAATGAGAAATCCTGATTTGTTTCTTGGCACTGATGCGACTCTGCTTGCTTATTGCGCACTTC
TGTAGTATG--TGCTCAAGTGCTGATGTTGCTGAAGTTCTGATGTTGTTCTTCATGATGCCATTTTGACGTCGATTGTTG
AGCCACGATTAA-TTTTACTACTAAGGATCCAAGGTCAATAATGGCGGCTGGGGCGGCAACTGTAAGCTGAATGCTGCTG
CTGCTGACCCTGTGCGGCCGGCTCCTCACAGCGGGAAGCGTCGCTGTATGCACTGCATGCCAGTGATTTCTTGCTTGGCT
TCCATGCGAGGCATCTGACGGCGTGATCACTAATCAAGCTGTAGCTTCAAGGTTTGAAATGCCTCCTGTCCAAGCTGCAA
TCAGAAACCACAGTGCAGTGACTCGATCCCACAGTGCCTCCACTGTTCGTG----GTTCGTTTGCTTTAGGGTTAGCTGG
GCCAGCTGATTAGTACTACTCCCTCCGTCTAGGTGAGTAAGTCATTTTAGGTTGTGCACCGTGACCAAGGAGGAGGAGAA
AACAAGAAAACTTAATGTTCATTTGCTAATTAATAGCAT---TGCATGCAATGAACTAACCACTGCATGTCGTGTTTGGT
AGTCTCAAGTCATTAAAAGCATGCACACCTTATTTCTTTTATTGGTTGATATGTCAAGAAACAAGAAACGAGGTAGAATT
TAATGCACCGCGCCTAAGTGTTTTGGAATTATTTGGTTTTCGTAAGGTGACTTCACTAACGCTCGCAAAGTGTGGTTGAC
TGTCGGTCGGCACTGTGCCACTGTTTTGTTTTGTTTTGCC-AAGGAGAGTTAATACAGGCGACATGAAGCAGTGCGTGGT
CTTGAAGATGCAATTAATGTGGGTGTGGGTGTGGGAAATCCGGCAGCATGATGTGGCTTTCTCCGCCTCGCATGCCTGCC
TCCTAGCGGCTAT-----GCGTATTGCAATGCGAGGTGTGTGGCCGTGCGTGTGACTAGTGTCAGGGCTTCATTCAGAAC
AACACCCCGTGGTCCTGAAACTGAAACAAATGGAGGGGAGGAGATCACGGTGACACCGACAGTC-------TCCGGATCC
CATGAACGGACGACGACGACG--------------CCCGCCGGGGAGAAGATAGCCCGTGAGGTGAGGTGGCCCGCGCGG
CAGCGACAGAGAGACGGAGAGCCATTCTTTAACTTTGGCGTGGAA-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S--------S------S------S------------------------SSSSSSSSSSSSS-----SS--SS-------
-------SSS---------S--------SS-------------------------------S------------------
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----------------------------------------SS--------------------------------------
-------------------S-----S------------------------------------------------------
------------------------------SSSSSS--------------------------------------------
-----S-------------------------------------S----------S---S-------SS-----S---SSS
SS--SSSSS--S-------S------S-S-S---S-----S--S---SS-------------------------------
-------------------------------------S------------------------------------------
---------------------------------------------------------------------S----------
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-----S------------------------------------S-------S-----------------------------
---S----------------------------------------------------------------------------
--S--S--------------------------------------------------S-----------------------
---------------------------------------------------------S----------------------
-----------SS-----------------------S----S--------------------S-----------------
-S---------------S--------------------S-----------------------------------------
--------------------------------------------------------------------S-----------
------SSSSS-----------------------------------------------------S---S-----------
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-----------------S----------------------------------------------------------S---
------------------------------S------S----S-------------------------------------
---------------------------------------------------SS---------------------------
------------S-SS--SSSSS-S-SSSS-S-SSS-S--SSSS-SS-S-SS----------------------------
--------------------------------SS--S-SSSS--------------------------------------
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-------------------------------------------------------------S---S--------------
----------------------------------------S-------------------------------------SS
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--------------------------S---------SSS---------------S--------SSSSSSSS---S-----
S---S---S------------SSSSSSSSSSSSSS---------S--SS---S---------------------------
--------------S------S--S-S--S-----SS-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_137
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-------------------------------------GCCCAACCCAATGCAACAAT-----------------------
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>reverse_2032
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-------------------------------CGCTTGCAAAGTGTGGTTGA-----------------------------
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