Multiple sequence alignment - TraesCS3D01G352800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G352800 chr3D 100.000 3777 0 0 1 3777 463529636 463525860 0.000000e+00 6975.0
1 TraesCS3D01G352800 chr3D 83.168 101 13 4 1796 1894 540563387 540563485 5.200000e-14 89.8
2 TraesCS3D01G352800 chr3A 88.512 1680 94 52 1933 3561 606660804 606659173 0.000000e+00 1941.0
3 TraesCS3D01G352800 chr3A 88.171 1547 101 30 36 1556 606662472 606660982 0.000000e+00 1768.0
4 TraesCS3D01G352800 chr3A 92.208 154 10 2 1645 1797 606660966 606660814 2.280000e-52 217.0
5 TraesCS3D01G352800 chr3B 88.123 1465 60 33 1879 3284 616774196 616772787 0.000000e+00 1637.0
6 TraesCS3D01G352800 chr3B 93.322 584 30 3 643 1223 616775453 616774876 0.000000e+00 854.0
7 TraesCS3D01G352800 chr3B 91.066 347 24 5 1229 1573 616774814 616774473 2.660000e-126 462.0
8 TraesCS3D01G352800 chr3B 83.525 522 43 14 1 520 616776870 616776390 7.440000e-122 448.0
9 TraesCS3D01G352800 chr3B 94.030 201 12 0 1597 1797 616774395 616774195 4.740000e-79 305.0
10 TraesCS3D01G352800 chr3B 86.869 99 12 1 1790 1888 71400468 71400371 3.990000e-20 110.0
11 TraesCS3D01G352800 chr3B 84.375 96 12 1 1796 1888 199529383 199529288 1.440000e-14 91.6
12 TraesCS3D01G352800 chr3B 92.000 50 3 1 464 512 411443985 411443936 6.770000e-08 69.4
13 TraesCS3D01G352800 chr3B 91.111 45 4 0 3351 3395 616772776 616772732 1.130000e-05 62.1
14 TraesCS3D01G352800 chr5A 84.848 462 48 16 1942 2390 35280047 35279595 2.680000e-121 446.0
15 TraesCS3D01G352800 chr5A 95.935 123 5 0 990 1112 35281016 35280894 2.300000e-47 200.0
16 TraesCS3D01G352800 chr5A 91.837 49 4 0 477 525 404563275 404563323 6.770000e-08 69.4
17 TraesCS3D01G352800 chr5A 93.478 46 2 1 467 512 27939574 27939618 2.430000e-07 67.6
18 TraesCS3D01G352800 chr5D 89.143 350 26 8 2045 2390 44783686 44783345 3.490000e-115 425.0
19 TraesCS3D01G352800 chr5D 96.800 125 4 0 990 1114 44785304 44785180 3.820000e-50 209.0
20 TraesCS3D01G352800 chr5D 89.412 85 9 0 1796 1880 40302831 40302747 1.430000e-19 108.0
21 TraesCS3D01G352800 chr5D 87.500 96 8 4 1796 1889 277816386 277816479 1.430000e-19 108.0
22 TraesCS3D01G352800 chr5D 84.444 90 14 0 1796 1885 238555672 238555761 5.200000e-14 89.8
23 TraesCS3D01G352800 chr7B 85.407 418 40 13 1942 2350 109394581 109394986 7.550000e-112 414.0
24 TraesCS3D01G352800 chr7B 85.273 421 41 13 1942 2353 148626046 148625638 7.550000e-112 414.0
25 TraesCS3D01G352800 chr7B 100.000 33 0 0 1555 1587 200132612 200132644 1.130000e-05 62.1
26 TraesCS3D01G352800 chr5B 85.407 418 40 13 1942 2350 297522189 297522594 7.550000e-112 414.0
27 TraesCS3D01G352800 chr5B 98.319 119 2 0 990 1108 44658095 44657977 3.820000e-50 209.0
28 TraesCS3D01G352800 chr5B 95.000 40 1 1 1554 1593 170597811 170597773 1.130000e-05 62.1
29 TraesCS3D01G352800 chr4B 85.238 420 43 14 1942 2353 16429709 16429301 7.550000e-112 414.0
30 TraesCS3D01G352800 chr1B 85.407 418 40 13 1942 2350 183641260 183641665 7.550000e-112 414.0
31 TraesCS3D01G352800 chr1B 80.851 423 69 10 13 429 409287582 409287166 4.710000e-84 322.0
32 TraesCS3D01G352800 chr1B 94.643 112 6 0 996 1107 512157160 512157271 1.390000e-39 174.0
33 TraesCS3D01G352800 chr1D 92.857 126 8 1 996 1121 382203562 382203686 8.330000e-42 182.0
34 TraesCS3D01G352800 chr1D 92.135 89 6 1 1794 1882 78965824 78965911 1.420000e-24 124.0
35 TraesCS3D01G352800 chr1A 91.270 126 10 1 996 1121 482277201 482277325 1.800000e-38 171.0
36 TraesCS3D01G352800 chr1A 88.636 88 10 0 1796 1883 589498373 589498460 1.430000e-19 108.0
37 TraesCS3D01G352800 chr1A 85.859 99 9 5 1786 1883 186994584 186994678 2.400000e-17 100.0
38 TraesCS3D01G352800 chr7A 91.150 113 10 0 996 1108 110964617 110964729 1.820000e-33 154.0
39 TraesCS3D01G352800 chr7A 88.172 93 11 0 1795 1887 71137352 71137260 1.110000e-20 111.0
40 TraesCS3D01G352800 chr6A 89.773 88 9 0 1796 1883 8000301 8000388 3.080000e-21 113.0
41 TraesCS3D01G352800 chr6A 83.495 103 15 2 1796 1897 598614794 598614895 1.120000e-15 95.3
42 TraesCS3D01G352800 chr6A 83.495 103 15 2 1796 1897 598617101 598617202 1.120000e-15 95.3
43 TraesCS3D01G352800 chr6A 95.652 46 2 0 474 519 104118362 104118407 1.460000e-09 75.0
44 TraesCS3D01G352800 chr4A 89.888 89 8 1 1796 1884 647209389 647209302 3.080000e-21 113.0
45 TraesCS3D01G352800 chr6D 83.168 101 13 4 1793 1891 157660533 157660435 5.200000e-14 89.8
46 TraesCS3D01G352800 chr6B 84.416 77 9 3 3703 3777 216655251 216655326 5.230000e-09 73.1
47 TraesCS3D01G352800 chr2B 92.308 52 3 1 477 527 358674750 358674801 5.230000e-09 73.1
48 TraesCS3D01G352800 chr2B 93.617 47 3 0 476 522 796805928 796805882 1.880000e-08 71.3
49 TraesCS3D01G352800 chr2A 92.308 52 3 1 477 527 373869000 373868949 5.230000e-09 73.1
50 TraesCS3D01G352800 chr2A 86.667 60 6 2 464 522 240483163 240483105 8.760000e-07 65.8
51 TraesCS3D01G352800 chr4D 97.500 40 0 1 1555 1594 451169212 451169250 2.430000e-07 67.6
52 TraesCS3D01G352800 chr2D 86.667 60 6 2 464 522 220977126 220977068 8.760000e-07 65.8
53 TraesCS3D01G352800 chrUn 100.000 33 0 0 3703 3735 24382297 24382265 1.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G352800 chr3D 463525860 463529636 3776 True 6975.000000 6975 100.000000 1 3777 1 chr3D.!!$R1 3776
1 TraesCS3D01G352800 chr3A 606659173 606662472 3299 True 1308.666667 1941 89.630333 36 3561 3 chr3A.!!$R1 3525
2 TraesCS3D01G352800 chr3B 616772732 616776870 4138 True 628.016667 1637 90.196167 1 3395 6 chr3B.!!$R4 3394
3 TraesCS3D01G352800 chr5A 35279595 35281016 1421 True 323.000000 446 90.391500 990 2390 2 chr5A.!!$R1 1400
4 TraesCS3D01G352800 chr5D 44783345 44785304 1959 True 317.000000 425 92.971500 990 2390 2 chr5D.!!$R2 1400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 1828 0.539438 TTCTTGTTCCATTGCGCCCT 60.539 50.0 4.18 0.0 0.0 5.19 F
2127 3818 0.954452 CAAGAGGGTGCTGTTTGTCC 59.046 55.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2441 4192 0.179004 ACATTGTTGGAAGCCACCGA 60.179 50.0 0.00 0.0 30.78 4.69 R
3590 5407 0.109597 GCTGCTGCGCACACTTTATT 60.110 50.0 5.66 0.0 33.79 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.185246 AGATATTGACAACCTCGCCAG 57.815 47.619 0.00 0.00 0.00 4.85
70 71 3.047877 CCTCGCGGGACCACAAAC 61.048 66.667 8.08 0.00 37.23 2.93
76 77 1.862602 GCGGGACCACAAACCACATC 61.863 60.000 0.00 0.00 0.00 3.06
94 95 1.702182 TCCAAGCATTTGTTGAGGCA 58.298 45.000 0.00 0.00 32.21 4.75
98 99 3.194116 CCAAGCATTTGTTGAGGCATAGT 59.806 43.478 0.00 0.00 32.21 2.12
160 161 7.515586 AAGAAGGATCTCATTGAGCATCATTA 58.484 34.615 17.74 0.63 39.33 1.90
172 173 4.529769 TGAGCATCATTAGCAGCTAGGTAT 59.470 41.667 1.49 0.00 42.56 2.73
181 182 7.338196 TCATTAGCAGCTAGGTATGAGATAGTC 59.662 40.741 10.18 0.00 0.00 2.59
183 184 6.381498 AGCAGCTAGGTATGAGATAGTCTA 57.619 41.667 0.00 0.00 0.00 2.59
368 372 3.181466 CGTATGACCAATGACAGATGGGA 60.181 47.826 13.12 2.05 41.17 4.37
379 383 2.171448 GACAGATGGGACCTACTTGCAT 59.829 50.000 0.00 0.00 0.00 3.96
384 388 3.517296 TGGGACCTACTTGCATGAAAA 57.483 42.857 6.60 0.00 0.00 2.29
385 389 3.153919 TGGGACCTACTTGCATGAAAAC 58.846 45.455 6.60 0.00 0.00 2.43
429 434 2.480419 GACTCTGTATTTGCGCACAACT 59.520 45.455 11.12 0.00 34.87 3.16
507 512 9.979270 CTAAATCAGCGACAATTAATATGGATC 57.021 33.333 0.00 0.00 0.00 3.36
508 513 7.984422 AATCAGCGACAATTAATATGGATCA 57.016 32.000 0.00 0.00 0.00 2.92
510 515 6.758254 TCAGCGACAATTAATATGGATCAGA 58.242 36.000 0.00 0.00 0.00 3.27
511 516 6.870439 TCAGCGACAATTAATATGGATCAGAG 59.130 38.462 0.00 0.00 0.00 3.35
512 517 6.870439 CAGCGACAATTAATATGGATCAGAGA 59.130 38.462 0.00 0.00 0.00 3.10
513 518 7.548427 CAGCGACAATTAATATGGATCAGAGAT 59.452 37.037 0.00 0.00 0.00 2.75
550 561 9.823647 TCTAATGGTTTATCACAAAGAGAGATC 57.176 33.333 0.00 0.00 0.00 2.75
631 1474 4.810345 TCTAGAAAAAGAAAAAGGGGGCA 58.190 39.130 0.00 0.00 0.00 5.36
664 1517 1.405463 TGACTTCGGTCCGATCATGAG 59.595 52.381 16.23 11.55 43.85 2.90
796 1649 3.090219 GCGTCCGCCAATCTAGGGT 62.090 63.158 0.00 0.00 34.56 4.34
911 1764 2.099921 CTCCACGAACCTCGATTCAGAT 59.900 50.000 2.59 0.00 43.74 2.90
928 1781 1.613630 ATCGCCCTTCACCTCACCT 60.614 57.895 0.00 0.00 0.00 4.00
975 1828 0.539438 TTCTTGTTCCATTGCGCCCT 60.539 50.000 4.18 0.00 0.00 5.19
1119 1975 2.272471 GTAAGCAGCCTCCCACCC 59.728 66.667 0.00 0.00 0.00 4.61
1145 2005 2.844348 TGTCCTAGTTTCTCCCCATTCC 59.156 50.000 0.00 0.00 0.00 3.01
1267 2190 6.600427 TGAGATGTTGACATTCATTGCAGTAT 59.400 34.615 0.00 0.00 36.57 2.12
1339 2269 5.069781 AGTTATGATCCAGAAGAGGTAGTGC 59.930 44.000 0.00 0.00 0.00 4.40
1394 2325 4.689612 TGATATTACTGAAGGTCCCAGC 57.310 45.455 0.00 0.00 35.14 4.85
1415 2348 3.002348 GCTTGTCTGGTTAAGTGTGTGAC 59.998 47.826 0.00 0.00 0.00 3.67
1563 2566 4.407296 CCAGCTTAATCAAGTACTCCCTCT 59.593 45.833 0.00 0.00 34.00 3.69
1573 2576 3.644335 AGTACTCCCTCTGTCCCATAAC 58.356 50.000 0.00 0.00 0.00 1.89
1575 2578 3.136641 ACTCCCTCTGTCCCATAACAT 57.863 47.619 0.00 0.00 0.00 2.71
1576 2579 4.280789 ACTCCCTCTGTCCCATAACATA 57.719 45.455 0.00 0.00 0.00 2.29
1577 2580 4.631234 ACTCCCTCTGTCCCATAACATAA 58.369 43.478 0.00 0.00 0.00 1.90
1579 2582 4.890988 TCCCTCTGTCCCATAACATAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1580 2583 4.901849 TCCCTCTGTCCCATAACATAAGAG 59.098 45.833 0.00 0.00 0.00 2.85
1581 2584 4.503991 CCCTCTGTCCCATAACATAAGAGC 60.504 50.000 0.00 0.00 0.00 4.09
1582 2585 4.302455 CTCTGTCCCATAACATAAGAGCG 58.698 47.826 0.00 0.00 0.00 5.03
1583 2586 3.704566 TCTGTCCCATAACATAAGAGCGT 59.295 43.478 0.00 0.00 0.00 5.07
1584 2587 4.161565 TCTGTCCCATAACATAAGAGCGTT 59.838 41.667 0.00 0.00 0.00 4.84
1585 2588 4.839121 TGTCCCATAACATAAGAGCGTTT 58.161 39.130 0.00 0.00 0.00 3.60
1586 2589 5.250200 TGTCCCATAACATAAGAGCGTTTT 58.750 37.500 0.00 0.00 0.00 2.43
1643 3220 3.433615 GCAGTTTTGAACATCTCGTAGCT 59.566 43.478 0.00 0.00 0.00 3.32
1676 3313 6.594788 ATTTCCTATTGTTGCTCATGTGTT 57.405 33.333 0.00 0.00 0.00 3.32
1692 3329 5.819379 TCATGTGTTGATCTGGCTATTCTTC 59.181 40.000 0.00 0.00 0.00 2.87
1800 3477 6.952935 ACTCAAAATAGAACTTGCTACTCG 57.047 37.500 0.00 0.00 0.00 4.18
1801 3478 5.348997 ACTCAAAATAGAACTTGCTACTCGC 59.651 40.000 0.00 0.00 39.77 5.03
1802 3479 5.479306 TCAAAATAGAACTTGCTACTCGCT 58.521 37.500 0.00 0.00 40.11 4.93
1803 3480 5.577164 TCAAAATAGAACTTGCTACTCGCTC 59.423 40.000 0.00 0.00 40.11 5.03
1804 3481 4.993029 AATAGAACTTGCTACTCGCTCT 57.007 40.909 0.00 0.00 40.11 4.09
1806 3483 1.889829 AGAACTTGCTACTCGCTCTGT 59.110 47.619 0.00 0.00 40.11 3.41
1807 3484 2.094957 AGAACTTGCTACTCGCTCTGTC 60.095 50.000 0.00 0.00 40.11 3.51
1808 3485 1.248486 ACTTGCTACTCGCTCTGTCA 58.752 50.000 0.00 0.00 40.11 3.58
1809 3486 1.068194 ACTTGCTACTCGCTCTGTCAC 60.068 52.381 0.00 0.00 40.11 3.67
1810 3487 0.958822 TTGCTACTCGCTCTGTCACA 59.041 50.000 0.00 0.00 40.11 3.58
1811 3488 1.177401 TGCTACTCGCTCTGTCACAT 58.823 50.000 0.00 0.00 40.11 3.21
1812 3489 2.365582 TGCTACTCGCTCTGTCACATA 58.634 47.619 0.00 0.00 40.11 2.29
1813 3490 2.752903 TGCTACTCGCTCTGTCACATAA 59.247 45.455 0.00 0.00 40.11 1.90
1814 3491 3.381590 TGCTACTCGCTCTGTCACATAAT 59.618 43.478 0.00 0.00 40.11 1.28
1815 3492 4.578928 TGCTACTCGCTCTGTCACATAATA 59.421 41.667 0.00 0.00 40.11 0.98
1816 3493 5.241728 TGCTACTCGCTCTGTCACATAATAT 59.758 40.000 0.00 0.00 40.11 1.28
1817 3494 6.430000 TGCTACTCGCTCTGTCACATAATATA 59.570 38.462 0.00 0.00 40.11 0.86
1818 3495 7.040686 TGCTACTCGCTCTGTCACATAATATAA 60.041 37.037 0.00 0.00 40.11 0.98
1819 3496 7.483375 GCTACTCGCTCTGTCACATAATATAAG 59.517 40.741 0.00 0.00 35.14 1.73
1820 3497 7.511959 ACTCGCTCTGTCACATAATATAAGA 57.488 36.000 0.00 0.00 0.00 2.10
1821 3498 7.941919 ACTCGCTCTGTCACATAATATAAGAA 58.058 34.615 0.00 0.00 0.00 2.52
1822 3499 7.863375 ACTCGCTCTGTCACATAATATAAGAAC 59.137 37.037 0.00 0.00 0.00 3.01
1823 3500 6.856426 TCGCTCTGTCACATAATATAAGAACG 59.144 38.462 0.00 0.00 0.00 3.95
1824 3501 6.637254 CGCTCTGTCACATAATATAAGAACGT 59.363 38.462 0.00 0.00 0.00 3.99
1825 3502 7.167635 CGCTCTGTCACATAATATAAGAACGTT 59.832 37.037 0.00 0.00 0.00 3.99
1826 3503 8.818057 GCTCTGTCACATAATATAAGAACGTTT 58.182 33.333 0.46 0.00 0.00 3.60
1857 3534 7.914537 CTGTTTTAGCTTGAAAAACGATCTT 57.085 32.000 15.21 0.00 45.52 2.40
1859 3536 9.612620 CTGTTTTAGCTTGAAAAACGATCTTAT 57.387 29.630 15.21 0.00 45.52 1.73
1867 3544 9.612620 GCTTGAAAAACGATCTTATATTATGGG 57.387 33.333 0.00 0.00 0.00 4.00
2001 3684 6.627243 ACTTGTGGGAAACTAAAACAAAGTC 58.373 36.000 0.00 0.00 30.90 3.01
2127 3818 0.954452 CAAGAGGGTGCTGTTTGTCC 59.046 55.000 0.00 0.00 0.00 4.02
2441 4192 7.275888 TGAATTTGTTGATCACTAGTTGCTT 57.724 32.000 0.00 0.00 0.00 3.91
2442 4193 7.362662 TGAATTTGTTGATCACTAGTTGCTTC 58.637 34.615 0.00 0.00 0.00 3.86
2454 4205 1.152860 TTGCTTCGGTGGCTTCCAA 60.153 52.632 0.00 0.00 34.18 3.53
2460 4211 0.179004 TCGGTGGCTTCCAACAATGT 60.179 50.000 1.53 0.00 42.24 2.71
2489 4240 1.820010 GCCCCTTTTCAAGCCAGTGG 61.820 60.000 4.20 4.20 0.00 4.00
2552 4303 3.141398 TCAACTTGGAAGATGTCAGTGC 58.859 45.455 0.00 0.00 31.53 4.40
2599 4350 6.690530 CAACCTTGGTCATAATCATTGTTGT 58.309 36.000 0.00 0.00 0.00 3.32
2616 4367 9.743057 TCATTGTTGTTTTATGTGGTTCTTTAG 57.257 29.630 0.00 0.00 0.00 1.85
2647 4398 1.879380 TGCTTGACCAAAGTCCATTCG 59.121 47.619 0.00 0.00 42.81 3.34
2731 4482 8.374327 TGTATATGAATGAGCTCATTGTTCTG 57.626 34.615 39.54 0.00 45.72 3.02
2814 4570 8.344831 TGGTGAAATTCTATTTATCTCAATGCG 58.655 33.333 0.00 0.00 0.00 4.73
2844 4600 6.128007 CCCGTATTTCCATATTATGCCAAGTC 60.128 42.308 0.00 0.00 0.00 3.01
2850 4606 6.747414 TCCATATTATGCCAAGTCTGTAGT 57.253 37.500 0.00 0.00 0.00 2.73
2855 4611 6.791867 ATTATGCCAAGTCTGTAGTCTGTA 57.208 37.500 0.00 0.00 0.00 2.74
2858 4614 2.417515 GCCAAGTCTGTAGTCTGTAGCC 60.418 54.545 0.00 0.00 0.00 3.93
2859 4615 3.093057 CCAAGTCTGTAGTCTGTAGCCT 58.907 50.000 0.00 0.00 0.00 4.58
2860 4616 3.119316 CCAAGTCTGTAGTCTGTAGCCTG 60.119 52.174 0.00 0.00 0.00 4.85
2914 4690 8.894409 TGAATTTTCGACACTATATTTGCAAG 57.106 30.769 0.00 0.00 0.00 4.01
2921 4697 6.040247 CGACACTATATTTGCAAGTGGAGTA 58.960 40.000 17.43 0.00 43.91 2.59
3049 4826 6.690957 CACAGAAATCAAGCGTCTTTGTTTTA 59.309 34.615 5.88 0.00 32.82 1.52
3166 4944 4.327680 CTTTAGGACCTTGAGAACTTGGG 58.672 47.826 0.00 0.00 0.00 4.12
3177 4955 0.673985 GAACTTGGGCCCTGTTTGTC 59.326 55.000 26.55 15.45 0.00 3.18
3179 4957 1.153756 CTTGGGCCCTGTTTGTCCT 59.846 57.895 25.70 0.00 0.00 3.85
3222 5000 1.234821 GTGCGGTTTTCATGGTCTGA 58.765 50.000 0.00 0.00 0.00 3.27
3265 5043 3.414700 GGTGGAGAAGTGTGCGCG 61.415 66.667 0.00 0.00 0.00 6.86
3287 5065 3.514645 GCATCGCTGGAAACAAAATCAT 58.485 40.909 0.00 0.00 42.06 2.45
3288 5066 4.439974 GGCATCGCTGGAAACAAAATCATA 60.440 41.667 0.00 0.00 42.06 2.15
3289 5067 5.284079 GCATCGCTGGAAACAAAATCATAT 58.716 37.500 0.00 0.00 42.06 1.78
3290 5068 5.174398 GCATCGCTGGAAACAAAATCATATG 59.826 40.000 0.00 0.00 42.06 1.78
3291 5069 5.247507 TCGCTGGAAACAAAATCATATGG 57.752 39.130 2.13 0.00 42.06 2.74
3294 5072 4.382901 GCTGGAAACAAAATCATATGGCCA 60.383 41.667 8.56 8.56 42.06 5.36
3295 5073 5.732633 CTGGAAACAAAATCATATGGCCAA 58.267 37.500 10.96 0.00 42.06 4.52
3298 5076 6.429385 TGGAAACAAAATCATATGGCCAAAAC 59.571 34.615 10.96 0.00 37.44 2.43
3299 5077 6.654582 GGAAACAAAATCATATGGCCAAAACT 59.345 34.615 10.96 0.00 0.00 2.66
3300 5078 7.361116 GGAAACAAAATCATATGGCCAAAACTG 60.361 37.037 10.96 5.11 0.00 3.16
3301 5079 5.490159 ACAAAATCATATGGCCAAAACTGG 58.510 37.500 10.96 0.00 0.00 4.00
3302 5080 5.012975 ACAAAATCATATGGCCAAAACTGGT 59.987 36.000 10.96 0.00 0.00 4.00
3303 5081 5.760484 AAATCATATGGCCAAAACTGGTT 57.240 34.783 10.96 4.62 0.00 3.67
3304 5082 4.741321 ATCATATGGCCAAAACTGGTTG 57.259 40.909 10.96 0.00 0.00 3.77
3305 5083 3.772387 TCATATGGCCAAAACTGGTTGA 58.228 40.909 10.96 1.28 0.00 3.18
3306 5084 4.155709 TCATATGGCCAAAACTGGTTGAA 58.844 39.130 10.96 0.00 0.00 2.69
3307 5085 4.590647 TCATATGGCCAAAACTGGTTGAAA 59.409 37.500 10.96 0.00 0.00 2.69
3308 5086 2.682155 TGGCCAAAACTGGTTGAAAC 57.318 45.000 0.61 0.00 0.00 2.78
3309 5087 2.183679 TGGCCAAAACTGGTTGAAACT 58.816 42.857 0.61 0.00 0.00 2.66
3310 5088 2.093764 TGGCCAAAACTGGTTGAAACTG 60.094 45.455 0.61 0.00 0.00 3.16
3311 5089 2.549926 GCCAAAACTGGTTGAAACTGG 58.450 47.619 0.00 0.00 0.00 4.00
3312 5090 2.093711 GCCAAAACTGGTTGAAACTGGT 60.094 45.455 0.00 0.00 0.00 4.00
3313 5091 3.618752 GCCAAAACTGGTTGAAACTGGTT 60.619 43.478 0.00 0.00 0.00 3.67
3314 5092 3.932089 CCAAAACTGGTTGAAACTGGTTG 59.068 43.478 0.00 0.00 0.00 3.77
3315 5093 4.562552 CCAAAACTGGTTGAAACTGGTTGT 60.563 41.667 0.00 0.00 0.00 3.32
3316 5094 4.882842 AAACTGGTTGAAACTGGTTGTT 57.117 36.364 0.00 0.00 41.29 2.83
3328 5106 3.799281 CTGGTTGTTTTCCAGCTCAAA 57.201 42.857 0.00 0.00 44.46 2.69
3329 5107 4.122143 CTGGTTGTTTTCCAGCTCAAAA 57.878 40.909 0.00 0.00 44.46 2.44
3330 5108 4.502962 CTGGTTGTTTTCCAGCTCAAAAA 58.497 39.130 2.32 1.05 44.46 1.94
3349 5127 3.902881 AAACTGGTTGTTTCCAATGCA 57.097 38.095 0.00 0.00 44.81 3.96
3350 5128 4.420522 AAACTGGTTGTTTCCAATGCAT 57.579 36.364 0.00 0.00 44.81 3.96
3351 5129 3.389925 ACTGGTTGTTTCCAATGCATG 57.610 42.857 0.00 0.00 37.01 4.06
3352 5130 2.964464 ACTGGTTGTTTCCAATGCATGA 59.036 40.909 0.00 0.00 37.01 3.07
3353 5131 3.579586 ACTGGTTGTTTCCAATGCATGAT 59.420 39.130 0.00 0.00 37.01 2.45
3397 5206 4.033776 CATGGTGGTCGGCCTGGT 62.034 66.667 7.97 0.00 35.27 4.00
3418 5227 0.528684 GCTATCTGGTCAGCACGGAC 60.529 60.000 0.00 0.00 37.73 4.79
3423 5232 1.284982 CTGGTCAGCACGGACGAAAG 61.285 60.000 0.00 0.00 38.70 2.62
3425 5234 1.954146 GTCAGCACGGACGAAAGCA 60.954 57.895 0.00 0.00 0.00 3.91
3469 5278 1.165270 GGCATAGTCCGTTTGCAACT 58.835 50.000 0.00 0.00 38.12 3.16
3479 5288 2.228582 CCGTTTGCAACTCATGGATTCA 59.771 45.455 0.00 0.00 0.00 2.57
3480 5289 3.305267 CCGTTTGCAACTCATGGATTCAA 60.305 43.478 0.00 0.00 0.00 2.69
3482 5291 4.383649 CGTTTGCAACTCATGGATTCAAAG 59.616 41.667 0.00 0.00 0.00 2.77
3483 5292 5.531634 GTTTGCAACTCATGGATTCAAAGA 58.468 37.500 0.00 0.00 0.00 2.52
3484 5293 5.787953 TTGCAACTCATGGATTCAAAGAA 57.212 34.783 0.00 0.00 0.00 2.52
3485 5294 5.988310 TGCAACTCATGGATTCAAAGAAT 57.012 34.783 0.00 0.00 0.00 2.40
3486 5295 7.465353 TTGCAACTCATGGATTCAAAGAATA 57.535 32.000 0.00 0.00 0.00 1.75
3488 5297 8.750515 TGCAACTCATGGATTCAAAGAATATA 57.249 30.769 0.00 0.00 0.00 0.86
3489 5298 9.358406 TGCAACTCATGGATTCAAAGAATATAT 57.642 29.630 0.00 0.00 0.00 0.86
3507 5320 9.148879 AGAATATATACCATAGTGGCATACTCC 57.851 37.037 0.00 0.00 42.67 3.85
3565 5382 5.762825 ACGGAGTAGTAGATGCGATAAAA 57.237 39.130 3.63 0.00 41.94 1.52
3566 5383 6.140303 ACGGAGTAGTAGATGCGATAAAAA 57.860 37.500 3.63 0.00 41.94 1.94
3567 5384 6.746120 ACGGAGTAGTAGATGCGATAAAAAT 58.254 36.000 3.63 0.00 41.94 1.82
3568 5385 7.208080 ACGGAGTAGTAGATGCGATAAAAATT 58.792 34.615 3.63 0.00 41.94 1.82
3569 5386 8.355169 ACGGAGTAGTAGATGCGATAAAAATTA 58.645 33.333 3.63 0.00 41.94 1.40
3570 5387 9.188588 CGGAGTAGTAGATGCGATAAAAATTAA 57.811 33.333 0.00 0.00 31.24 1.40
3577 5394 9.982291 GTAGATGCGATAAAAATTAAAGACACA 57.018 29.630 0.00 0.00 0.00 3.72
3579 5396 9.507280 AGATGCGATAAAAATTAAAGACACATG 57.493 29.630 0.00 0.00 0.00 3.21
3580 5397 9.502145 GATGCGATAAAAATTAAAGACACATGA 57.498 29.630 0.00 0.00 0.00 3.07
3581 5398 8.667987 TGCGATAAAAATTAAAGACACATGAC 57.332 30.769 0.00 0.00 0.00 3.06
3582 5399 8.511321 TGCGATAAAAATTAAAGACACATGACT 58.489 29.630 0.00 0.00 0.00 3.41
3583 5400 9.000018 GCGATAAAAATTAAAGACACATGACTC 58.000 33.333 0.00 0.00 0.00 3.36
3588 5405 9.878599 AAAAATTAAAGACACATGACTCTTACG 57.121 29.630 0.00 0.00 0.00 3.18
3589 5406 8.603242 AAATTAAAGACACATGACTCTTACGT 57.397 30.769 0.00 0.00 0.00 3.57
3590 5407 9.701098 AAATTAAAGACACATGACTCTTACGTA 57.299 29.630 0.00 0.00 0.00 3.57
3591 5408 9.701098 AATTAAAGACACATGACTCTTACGTAA 57.299 29.630 7.94 7.94 0.00 3.18
3592 5409 9.871238 ATTAAAGACACATGACTCTTACGTAAT 57.129 29.630 8.76 0.00 0.00 1.89
3595 5412 9.701098 AAAGACACATGACTCTTACGTAATAAA 57.299 29.630 8.76 0.00 0.00 1.40
3596 5413 8.912787 AGACACATGACTCTTACGTAATAAAG 57.087 34.615 8.76 9.31 0.00 1.85
3597 5414 8.521176 AGACACATGACTCTTACGTAATAAAGT 58.479 33.333 8.76 12.30 0.00 2.66
3598 5415 8.462143 ACACATGACTCTTACGTAATAAAGTG 57.538 34.615 17.69 16.16 0.00 3.16
3599 5416 8.086522 ACACATGACTCTTACGTAATAAAGTGT 58.913 33.333 17.69 16.61 33.44 3.55
3600 5417 8.373256 CACATGACTCTTACGTAATAAAGTGTG 58.627 37.037 17.69 17.54 31.54 3.82
3601 5418 6.939551 TGACTCTTACGTAATAAAGTGTGC 57.060 37.500 17.69 8.39 31.54 4.57
3602 5419 5.570206 TGACTCTTACGTAATAAAGTGTGCG 59.430 40.000 17.69 1.48 31.54 5.34
3603 5420 4.325472 ACTCTTACGTAATAAAGTGTGCGC 59.675 41.667 8.76 0.00 30.54 6.09
3604 5421 4.236147 TCTTACGTAATAAAGTGTGCGCA 58.764 39.130 5.66 5.66 0.00 6.09
3605 5422 4.325204 TCTTACGTAATAAAGTGTGCGCAG 59.675 41.667 12.22 0.00 0.00 5.18
3618 5435 4.280276 CGCAGCAGCATCGATTTG 57.720 55.556 0.82 0.00 42.27 2.32
3619 5436 1.426621 CGCAGCAGCATCGATTTGT 59.573 52.632 0.82 0.00 42.27 2.83
3620 5437 0.652071 CGCAGCAGCATCGATTTGTA 59.348 50.000 0.82 0.00 42.27 2.41
3621 5438 1.332640 CGCAGCAGCATCGATTTGTAG 60.333 52.381 0.82 0.00 42.27 2.74
3622 5439 1.003116 GCAGCAGCATCGATTTGTAGG 60.003 52.381 0.00 0.00 41.58 3.18
3623 5440 2.554142 CAGCAGCATCGATTTGTAGGA 58.446 47.619 0.00 0.00 0.00 2.94
3624 5441 2.938451 CAGCAGCATCGATTTGTAGGAA 59.062 45.455 0.00 0.00 0.00 3.36
3625 5442 2.939103 AGCAGCATCGATTTGTAGGAAC 59.061 45.455 0.00 0.00 0.00 3.62
3626 5443 2.285834 GCAGCATCGATTTGTAGGAACG 60.286 50.000 0.00 0.00 0.00 3.95
3627 5444 3.186909 CAGCATCGATTTGTAGGAACGA 58.813 45.455 0.00 0.00 37.39 3.85
3628 5445 3.804325 CAGCATCGATTTGTAGGAACGAT 59.196 43.478 0.00 0.00 42.89 3.73
3631 5448 4.665833 ATCGATTTGTAGGAACGATGGA 57.334 40.909 0.00 0.00 41.09 3.41
3632 5449 4.665833 TCGATTTGTAGGAACGATGGAT 57.334 40.909 0.00 0.00 0.00 3.41
3633 5450 4.368315 TCGATTTGTAGGAACGATGGATG 58.632 43.478 0.00 0.00 0.00 3.51
3634 5451 4.119862 CGATTTGTAGGAACGATGGATGT 58.880 43.478 0.00 0.00 0.00 3.06
3635 5452 4.209288 CGATTTGTAGGAACGATGGATGTC 59.791 45.833 0.00 0.00 0.00 3.06
3636 5453 4.819105 TTTGTAGGAACGATGGATGTCT 57.181 40.909 0.00 0.00 0.00 3.41
3637 5454 3.801114 TGTAGGAACGATGGATGTCTG 57.199 47.619 0.00 0.00 0.00 3.51
3638 5455 3.096852 TGTAGGAACGATGGATGTCTGT 58.903 45.455 0.00 0.00 0.00 3.41
3639 5456 3.513912 TGTAGGAACGATGGATGTCTGTT 59.486 43.478 0.00 0.00 0.00 3.16
3640 5457 3.252974 AGGAACGATGGATGTCTGTTC 57.747 47.619 0.00 0.00 38.50 3.18
3642 5459 3.252974 GAACGATGGATGTCTGTTCCT 57.747 47.619 0.00 0.00 34.35 3.36
3643 5460 4.386867 GAACGATGGATGTCTGTTCCTA 57.613 45.455 0.00 0.00 34.35 2.94
3644 5461 4.363999 GAACGATGGATGTCTGTTCCTAG 58.636 47.826 0.00 0.00 34.35 3.02
3645 5462 3.366396 ACGATGGATGTCTGTTCCTAGT 58.634 45.455 0.00 0.00 34.17 2.57
3646 5463 4.533815 ACGATGGATGTCTGTTCCTAGTA 58.466 43.478 0.00 0.00 34.17 1.82
3647 5464 4.580995 ACGATGGATGTCTGTTCCTAGTAG 59.419 45.833 0.00 0.00 34.17 2.57
3648 5465 4.557695 CGATGGATGTCTGTTCCTAGTAGC 60.558 50.000 0.00 0.00 34.17 3.58
3649 5466 3.708451 TGGATGTCTGTTCCTAGTAGCA 58.292 45.455 0.00 0.00 34.17 3.49
3650 5467 4.290093 TGGATGTCTGTTCCTAGTAGCAT 58.710 43.478 0.00 0.00 34.17 3.79
3651 5468 4.342378 TGGATGTCTGTTCCTAGTAGCATC 59.658 45.833 0.00 0.00 34.17 3.91
3652 5469 4.342378 GGATGTCTGTTCCTAGTAGCATCA 59.658 45.833 11.42 0.00 34.79 3.07
3653 5470 4.991153 TGTCTGTTCCTAGTAGCATCAG 57.009 45.455 0.00 0.00 0.00 2.90
3654 5471 3.131223 TGTCTGTTCCTAGTAGCATCAGC 59.869 47.826 0.00 0.00 42.56 4.26
3664 5481 2.107750 GCATCAGCGCAGAGGCTA 59.892 61.111 28.62 0.00 42.53 3.93
3665 5482 1.301558 GCATCAGCGCAGAGGCTAT 60.302 57.895 28.62 0.00 42.53 2.97
3666 5483 0.883814 GCATCAGCGCAGAGGCTATT 60.884 55.000 28.62 0.00 42.53 1.73
3667 5484 0.866427 CATCAGCGCAGAGGCTATTG 59.134 55.000 11.47 0.00 42.53 1.90
3668 5485 0.883814 ATCAGCGCAGAGGCTATTGC 60.884 55.000 11.47 12.16 42.53 3.56
3669 5486 1.816679 CAGCGCAGAGGCTATTGCA 60.817 57.895 19.57 0.00 42.53 4.08
3670 5487 1.147824 AGCGCAGAGGCTATTGCAT 59.852 52.632 19.57 7.91 42.62 3.96
3671 5488 1.164662 AGCGCAGAGGCTATTGCATG 61.165 55.000 19.57 8.49 42.62 4.06
3672 5489 1.442526 GCGCAGAGGCTATTGCATGT 61.443 55.000 19.57 0.00 40.28 3.21
3673 5490 0.585357 CGCAGAGGCTATTGCATGTC 59.415 55.000 19.57 0.00 40.28 3.06
3674 5491 0.585357 GCAGAGGCTATTGCATGTCG 59.415 55.000 16.10 0.00 41.91 4.35
3675 5492 1.945387 CAGAGGCTATTGCATGTCGT 58.055 50.000 0.66 0.00 41.91 4.34
3676 5493 1.596260 CAGAGGCTATTGCATGTCGTG 59.404 52.381 0.66 0.00 41.91 4.35
3677 5494 1.482182 AGAGGCTATTGCATGTCGTGA 59.518 47.619 0.66 0.00 41.91 4.35
3678 5495 2.093500 AGAGGCTATTGCATGTCGTGAA 60.093 45.455 0.66 0.00 41.91 3.18
3679 5496 2.009774 AGGCTATTGCATGTCGTGAAC 58.990 47.619 0.66 0.00 41.91 3.18
3680 5497 1.267532 GGCTATTGCATGTCGTGAACG 60.268 52.381 0.66 0.00 41.91 3.95
3681 5498 1.267532 GCTATTGCATGTCGTGAACGG 60.268 52.381 2.59 0.00 38.39 4.44
3682 5499 0.724549 TATTGCATGTCGTGAACGGC 59.275 50.000 0.00 0.00 45.40 5.68
3683 5500 0.955428 ATTGCATGTCGTGAACGGCT 60.955 50.000 9.06 0.00 45.41 5.52
3684 5501 1.565156 TTGCATGTCGTGAACGGCTC 61.565 55.000 9.06 0.00 45.41 4.70
3685 5502 2.027073 GCATGTCGTGAACGGCTCA 61.027 57.895 9.06 4.26 45.41 4.26
3692 5509 3.744559 TGAACGGCTCACTTTGGC 58.255 55.556 0.00 0.00 0.00 4.52
3693 5510 1.148273 TGAACGGCTCACTTTGGCT 59.852 52.632 0.00 0.00 0.00 4.75
3694 5511 0.465460 TGAACGGCTCACTTTGGCTT 60.465 50.000 0.00 0.00 0.00 4.35
3695 5512 0.238553 GAACGGCTCACTTTGGCTTC 59.761 55.000 0.00 0.00 0.00 3.86
3696 5513 0.465460 AACGGCTCACTTTGGCTTCA 60.465 50.000 0.00 0.00 0.00 3.02
3697 5514 0.886490 ACGGCTCACTTTGGCTTCAG 60.886 55.000 0.00 0.00 0.00 3.02
3698 5515 0.603707 CGGCTCACTTTGGCTTCAGA 60.604 55.000 0.00 0.00 0.00 3.27
3699 5516 1.609208 GGCTCACTTTGGCTTCAGAA 58.391 50.000 0.00 0.00 0.00 3.02
3700 5517 2.165998 GGCTCACTTTGGCTTCAGAAT 58.834 47.619 0.00 0.00 0.00 2.40
3701 5518 2.560105 GGCTCACTTTGGCTTCAGAATT 59.440 45.455 0.00 0.00 0.00 2.17
3702 5519 3.758554 GGCTCACTTTGGCTTCAGAATTA 59.241 43.478 0.00 0.00 0.00 1.40
3703 5520 4.142513 GGCTCACTTTGGCTTCAGAATTAG 60.143 45.833 0.00 0.00 0.00 1.73
3704 5521 4.697352 GCTCACTTTGGCTTCAGAATTAGA 59.303 41.667 0.00 0.00 0.00 2.10
3705 5522 5.163774 GCTCACTTTGGCTTCAGAATTAGAG 60.164 44.000 0.00 0.00 0.00 2.43
3706 5523 4.697352 TCACTTTGGCTTCAGAATTAGAGC 59.303 41.667 0.00 0.00 0.00 4.09
3707 5524 4.456911 CACTTTGGCTTCAGAATTAGAGCA 59.543 41.667 0.00 0.00 0.00 4.26
3708 5525 5.125097 CACTTTGGCTTCAGAATTAGAGCAT 59.875 40.000 0.00 0.00 0.00 3.79
3709 5526 5.356470 ACTTTGGCTTCAGAATTAGAGCATC 59.644 40.000 0.00 0.00 0.00 3.91
3720 5537 3.934684 GAGCATCTTCAGCCGCGC 61.935 66.667 0.00 0.00 0.00 6.86
3737 5554 3.589542 CCCCAAACAGGCCCCTCA 61.590 66.667 0.00 0.00 35.39 3.86
3738 5555 2.772924 CCCAAACAGGCCCCTCAT 59.227 61.111 0.00 0.00 35.39 2.90
3739 5556 1.580066 CCCCAAACAGGCCCCTCATA 61.580 60.000 0.00 0.00 35.39 2.15
3740 5557 0.557729 CCCAAACAGGCCCCTCATAT 59.442 55.000 0.00 0.00 35.39 1.78
3741 5558 1.696063 CCAAACAGGCCCCTCATATG 58.304 55.000 0.00 0.00 0.00 1.78
3742 5559 1.215173 CCAAACAGGCCCCTCATATGA 59.785 52.381 5.07 5.07 0.00 2.15
3743 5560 2.158415 CCAAACAGGCCCCTCATATGAT 60.158 50.000 5.72 0.00 0.00 2.45
3744 5561 3.569491 CAAACAGGCCCCTCATATGATT 58.431 45.455 5.72 0.00 0.00 2.57
3745 5562 3.962718 CAAACAGGCCCCTCATATGATTT 59.037 43.478 5.72 0.00 0.00 2.17
3746 5563 3.979501 ACAGGCCCCTCATATGATTTT 57.020 42.857 5.72 0.00 0.00 1.82
3747 5564 4.270317 ACAGGCCCCTCATATGATTTTT 57.730 40.909 5.72 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.107204 GTCCATGGGGCTTGACATATCT 59.893 50.000 13.02 0.00 0.00 1.98
11 12 1.891933 TCATAGTCCATGGGGCTTGA 58.108 50.000 13.02 12.90 35.16 3.02
14 15 2.196742 TCTTCATAGTCCATGGGGCT 57.803 50.000 13.02 13.02 35.16 5.19
63 64 1.039068 TGCTTGGATGTGGTTTGTGG 58.961 50.000 0.00 0.00 0.00 4.17
70 71 3.581755 CTCAACAAATGCTTGGATGTGG 58.418 45.455 0.00 0.00 36.82 4.17
76 77 2.754946 ATGCCTCAACAAATGCTTGG 57.245 45.000 0.00 0.00 36.82 3.61
94 95 5.128919 GCCATGTCTTCAATCTTCCACTAT 58.871 41.667 0.00 0.00 0.00 2.12
98 99 2.309755 AGGCCATGTCTTCAATCTTCCA 59.690 45.455 5.01 0.00 0.00 3.53
160 161 5.255397 AGACTATCTCATACCTAGCTGCT 57.745 43.478 7.57 7.57 0.00 4.24
368 372 7.701539 TCATATTGTTTTCATGCAAGTAGGT 57.298 32.000 0.00 0.00 0.00 3.08
407 412 2.455674 TGTGCGCAAATACAGAGTCT 57.544 45.000 14.00 0.00 0.00 3.24
472 477 6.606234 TTGTCGCTGATTTAGTACAACAAA 57.394 33.333 0.00 0.00 32.84 2.83
586 597 4.949856 AGAAAGTCTGCCTTTGTCTCAAAA 59.050 37.500 0.00 0.00 43.47 2.44
587 598 4.526970 AGAAAGTCTGCCTTTGTCTCAAA 58.473 39.130 0.00 0.00 43.47 2.69
589 600 3.733337 GAGAAAGTCTGCCTTTGTCTCA 58.267 45.455 1.61 0.00 45.42 3.27
593 604 5.552870 TTCTAGAGAAAGTCTGCCTTTGT 57.447 39.130 0.00 0.00 43.47 2.83
594 605 6.867662 TTTTCTAGAGAAAGTCTGCCTTTG 57.132 37.500 4.96 0.00 43.47 2.77
596 607 6.831976 TCTTTTTCTAGAGAAAGTCTGCCTT 58.168 36.000 26.43 0.00 43.90 4.35
598 609 7.497925 TTTCTTTTTCTAGAGAAAGTCTGCC 57.502 36.000 26.43 0.00 43.90 4.85
599 610 9.444534 CTTTTTCTTTTTCTAGAGAAAGTCTGC 57.555 33.333 26.43 0.00 43.90 4.26
600 611 9.943163 CCTTTTTCTTTTTCTAGAGAAAGTCTG 57.057 33.333 26.43 16.41 43.90 3.51
602 613 8.353684 CCCCTTTTTCTTTTTCTAGAGAAAGTC 58.646 37.037 26.43 0.00 43.90 3.01
603 614 7.287927 CCCCCTTTTTCTTTTTCTAGAGAAAGT 59.712 37.037 26.43 0.00 43.90 2.66
604 615 7.661968 CCCCCTTTTTCTTTTTCTAGAGAAAG 58.338 38.462 23.46 23.46 43.90 2.62
606 617 5.538813 GCCCCCTTTTTCTTTTTCTAGAGAA 59.461 40.000 0.00 0.00 0.00 2.87
631 1474 5.469084 GGACCGAAGTCACTAAATTGTTTCT 59.531 40.000 0.00 0.00 45.48 2.52
664 1517 0.536006 GGTAGCTGGGTGATGATGGC 60.536 60.000 0.00 0.00 0.00 4.40
796 1649 0.889186 GCCTGCGTCCCAGAAGAAAA 60.889 55.000 0.00 0.00 44.64 2.29
911 1764 2.203788 AGGTGAGGTGAAGGGCGA 60.204 61.111 0.00 0.00 0.00 5.54
928 1781 3.631250 GGAATAATCAAACAGGAGCCCA 58.369 45.455 0.00 0.00 0.00 5.36
975 1828 2.180276 GGTCTCCTGCTAACCTGAGAA 58.820 52.381 0.00 0.00 35.76 2.87
1095 1948 1.224870 GAGGCTGCTTACCCCCTTC 59.775 63.158 0.00 0.00 0.00 3.46
1119 1975 1.555533 GGGAGAAACTAGGACAGTGGG 59.444 57.143 0.00 0.00 37.63 4.61
1145 2005 3.160269 AGGAGACCAAATGGCAGAAAAG 58.840 45.455 0.00 0.00 39.32 2.27
1267 2190 9.462174 CAAGATAGTATTCAAACAAGCACAAAA 57.538 29.630 0.00 0.00 0.00 2.44
1394 2325 3.245284 CGTCACACACTTAACCAGACAAG 59.755 47.826 0.00 0.00 0.00 3.16
1407 2338 2.131972 TGCAAGATACACGTCACACAC 58.868 47.619 0.00 0.00 0.00 3.82
1415 2348 6.195244 GCTTTCATGTAATTGCAAGATACACG 59.805 38.462 22.80 17.70 32.80 4.49
1462 2406 3.503748 GGCTGGCCTCAATATGTACATTC 59.496 47.826 14.77 0.00 0.00 2.67
1584 2587 8.527810 ACAGAATTAGAAAGTTGGTGTCAAAAA 58.472 29.630 0.00 0.00 34.28 1.94
1585 2588 7.973388 CACAGAATTAGAAAGTTGGTGTCAAAA 59.027 33.333 0.00 0.00 34.28 2.44
1586 2589 7.122055 ACACAGAATTAGAAAGTTGGTGTCAAA 59.878 33.333 0.00 0.00 31.98 2.69
1589 2592 6.619801 ACACAGAATTAGAAAGTTGGTGTC 57.380 37.500 0.00 0.00 31.98 3.67
1590 2593 8.514330 TTAACACAGAATTAGAAAGTTGGTGT 57.486 30.769 0.00 0.00 38.47 4.16
1676 3313 4.293494 AGTCAGGAAGAATAGCCAGATCA 58.707 43.478 0.00 0.00 0.00 2.92
1692 3329 6.867550 TGTCTGTATCAGTAATCAAGTCAGG 58.132 40.000 0.00 0.00 32.61 3.86
1762 3439 9.677567 TCTATTTTGAGTTTTAACATGACAAGC 57.322 29.630 0.00 0.00 0.00 4.01
1797 3474 7.060059 CGTTCTTATATTATGTGACAGAGCGAG 59.940 40.741 0.00 0.00 36.10 5.03
1799 3476 6.637254 ACGTTCTTATATTATGTGACAGAGCG 59.363 38.462 0.00 0.00 38.83 5.03
1800 3477 7.932120 ACGTTCTTATATTATGTGACAGAGC 57.068 36.000 0.00 0.00 0.00 4.09
1833 3510 7.914537 AAGATCGTTTTTCAAGCTAAAACAG 57.085 32.000 18.63 12.95 42.68 3.16
1841 3518 9.612620 CCCATAATATAAGATCGTTTTTCAAGC 57.387 33.333 0.00 0.00 0.00 4.01
1844 3521 9.839817 TGTCCCATAATATAAGATCGTTTTTCA 57.160 29.630 0.00 0.00 0.00 2.69
1847 3524 9.712305 CTCTGTCCCATAATATAAGATCGTTTT 57.288 33.333 0.00 0.00 0.00 2.43
1848 3525 8.314751 CCTCTGTCCCATAATATAAGATCGTTT 58.685 37.037 0.00 0.00 0.00 3.60
1849 3526 7.093289 CCCTCTGTCCCATAATATAAGATCGTT 60.093 40.741 0.00 0.00 0.00 3.85
1850 3527 6.381420 CCCTCTGTCCCATAATATAAGATCGT 59.619 42.308 0.00 0.00 0.00 3.73
1851 3528 6.607600 TCCCTCTGTCCCATAATATAAGATCG 59.392 42.308 0.00 0.00 0.00 3.69
1852 3529 7.621683 ACTCCCTCTGTCCCATAATATAAGATC 59.378 40.741 0.00 0.00 0.00 2.75
1853 3530 7.491681 ACTCCCTCTGTCCCATAATATAAGAT 58.508 38.462 0.00 0.00 0.00 2.40
1854 3531 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
1855 3532 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
1856 3533 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
1857 3534 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
1858 3535 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
1859 3536 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
1860 3537 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
1861 3538 4.348020 AACTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
1862 3539 4.348020 AAACTACTCCCTCTGTCCCATA 57.652 45.455 0.00 0.00 0.00 2.74
1863 3540 2.950990 AACTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
1864 3541 2.637872 CAAAACTACTCCCTCTGTCCCA 59.362 50.000 0.00 0.00 0.00 4.37
1865 3542 2.904434 TCAAAACTACTCCCTCTGTCCC 59.096 50.000 0.00 0.00 0.00 4.46
1866 3543 4.570930 CTTCAAAACTACTCCCTCTGTCC 58.429 47.826 0.00 0.00 0.00 4.02
1867 3544 3.997681 GCTTCAAAACTACTCCCTCTGTC 59.002 47.826 0.00 0.00 0.00 3.51
1868 3545 3.391296 TGCTTCAAAACTACTCCCTCTGT 59.609 43.478 0.00 0.00 0.00 3.41
1869 3546 4.008074 TGCTTCAAAACTACTCCCTCTG 57.992 45.455 0.00 0.00 0.00 3.35
1870 3547 4.706842 TTGCTTCAAAACTACTCCCTCT 57.293 40.909 0.00 0.00 0.00 3.69
1871 3548 5.966742 ATTTGCTTCAAAACTACTCCCTC 57.033 39.130 0.00 0.00 36.90 4.30
1872 3549 7.505923 AGTTAATTTGCTTCAAAACTACTCCCT 59.494 33.333 0.00 0.00 36.90 4.20
1873 3550 7.658261 AGTTAATTTGCTTCAAAACTACTCCC 58.342 34.615 0.00 0.00 36.90 4.30
1915 3592 6.655003 TCAGTTTTGTTTTTGTTTGGGCATTA 59.345 30.769 0.00 0.00 0.00 1.90
1916 3593 5.474876 TCAGTTTTGTTTTTGTTTGGGCATT 59.525 32.000 0.00 0.00 0.00 3.56
2001 3684 7.568134 GCAGAGAAACATACAAATGCAAAGTTG 60.568 37.037 0.00 0.00 36.50 3.16
2127 3818 3.270877 CAACCTCCCTAATCAAGTTCCG 58.729 50.000 0.00 0.00 0.00 4.30
2441 4192 0.179004 ACATTGTTGGAAGCCACCGA 60.179 50.000 0.00 0.00 30.78 4.69
2442 4193 0.673437 AACATTGTTGGAAGCCACCG 59.327 50.000 0.15 0.00 30.78 4.94
2471 4222 1.820010 GCCACTGGCTTGAAAAGGGG 61.820 60.000 13.28 0.00 46.35 4.79
2489 4240 8.552034 CCTACACTACTTGCAATATAGAAAAGC 58.448 37.037 19.57 0.00 0.00 3.51
2552 4303 4.375272 CTCCATTGTCTACAGCACCATAG 58.625 47.826 0.00 0.00 0.00 2.23
2616 4367 5.408299 ACTTTGGTCAAGCAAAAGAAACAAC 59.592 36.000 8.53 0.00 39.88 3.32
2647 4398 7.881775 ATTTATGTTTCCTGATTGGTAGGAC 57.118 36.000 0.00 0.00 43.75 3.85
2707 4458 8.375608 ACAGAACAATGAGCTCATTCATATAC 57.624 34.615 33.95 21.70 44.10 1.47
2731 4482 1.066143 CCACCACCAGACCTACATGAC 60.066 57.143 0.00 0.00 0.00 3.06
2814 4570 5.621329 GCATAATATGGAAATACGGGGCAAC 60.621 44.000 2.13 0.00 0.00 4.17
2844 4600 1.134965 GCCACAGGCTACAGACTACAG 60.135 57.143 0.00 0.00 46.69 2.74
2858 4614 4.037208 ACTCTGAACTTGAAATTGCCACAG 59.963 41.667 0.00 0.00 0.00 3.66
2859 4615 3.953612 ACTCTGAACTTGAAATTGCCACA 59.046 39.130 0.00 0.00 0.00 4.17
2860 4616 4.036734 TGACTCTGAACTTGAAATTGCCAC 59.963 41.667 0.00 0.00 0.00 5.01
2864 4620 9.390795 CATAGTTTGACTCTGAACTTGAAATTG 57.609 33.333 0.00 0.00 37.32 2.32
2865 4621 9.342308 TCATAGTTTGACTCTGAACTTGAAATT 57.658 29.630 0.00 0.00 37.32 1.82
2867 4623 8.731275 TTCATAGTTTGACTCTGAACTTGAAA 57.269 30.769 5.20 0.00 36.71 2.69
2897 4671 4.870426 ACTCCACTTGCAAATATAGTGTCG 59.130 41.667 13.08 7.06 38.04 4.35
2906 4682 4.151883 ACCATGTTACTCCACTTGCAAAT 58.848 39.130 0.00 0.00 0.00 2.32
2907 4683 3.561143 ACCATGTTACTCCACTTGCAAA 58.439 40.909 0.00 0.00 0.00 3.68
2914 4690 5.293569 GCAATGTACTACCATGTTACTCCAC 59.706 44.000 0.00 0.00 0.00 4.02
2921 4697 6.179756 TCAGAATGCAATGTACTACCATGTT 58.820 36.000 0.00 0.00 34.76 2.71
2986 4763 7.939784 AGGTATTCTCAAAATAGAAACCACC 57.060 36.000 14.57 11.04 38.90 4.61
2997 4774 9.807921 AAGAAAAGGTGATAGGTATTCTCAAAA 57.192 29.630 0.00 0.00 0.00 2.44
3057 4834 4.202060 CGCCATACAGATAGCTCGGATATT 60.202 45.833 0.00 0.00 0.00 1.28
3058 4835 3.316588 CGCCATACAGATAGCTCGGATAT 59.683 47.826 0.00 0.00 0.00 1.63
3166 4944 1.204704 GGCATTAAGGACAAACAGGGC 59.795 52.381 0.00 0.00 0.00 5.19
3265 5043 2.262211 GATTTTGTTTCCAGCGATGCC 58.738 47.619 0.00 0.00 0.00 4.40
3294 5072 4.882842 ACAACCAGTTTCAACCAGTTTT 57.117 36.364 0.00 0.00 0.00 2.43
3295 5073 4.882842 AACAACCAGTTTCAACCAGTTT 57.117 36.364 0.00 0.00 37.03 2.66
3309 5087 4.543590 TTTTTGAGCTGGAAAACAACCA 57.456 36.364 0.00 0.00 35.96 3.67
3332 5110 5.677375 GCATCATGCATTGGAAACAACCAG 61.677 45.833 4.20 0.00 43.73 4.00
3333 5111 3.865302 GCATCATGCATTGGAAACAACCA 60.865 43.478 4.20 0.00 43.73 3.67
3334 5112 2.674357 GCATCATGCATTGGAAACAACC 59.326 45.455 4.20 0.00 43.73 3.77
3347 5125 2.068519 TCGTCCGATAATGCATCATGC 58.931 47.619 1.35 1.35 45.29 4.06
3348 5126 2.669924 CCTCGTCCGATAATGCATCATG 59.330 50.000 0.00 0.00 32.71 3.07
3349 5127 2.562738 TCCTCGTCCGATAATGCATCAT 59.437 45.455 0.00 0.00 32.71 2.45
3350 5128 1.960689 TCCTCGTCCGATAATGCATCA 59.039 47.619 0.00 0.00 32.71 3.07
3351 5129 2.029828 ACTCCTCGTCCGATAATGCATC 60.030 50.000 0.00 0.00 0.00 3.91
3352 5130 1.964223 ACTCCTCGTCCGATAATGCAT 59.036 47.619 0.00 0.00 0.00 3.96
3353 5131 1.399714 ACTCCTCGTCCGATAATGCA 58.600 50.000 0.00 0.00 0.00 3.96
3362 5171 3.512680 CATGAGTGTAAACTCCTCGTCC 58.487 50.000 10.66 0.00 35.97 4.79
3397 5206 1.032794 CCGTGCTGACCAGATAGCTA 58.967 55.000 0.00 0.00 40.52 3.32
3418 5227 9.979270 GGTATATATTCTCATGAATTGCTTTCG 57.021 33.333 0.00 0.00 42.37 3.46
3541 5358 2.320745 TCGCATCTACTACTCCGTCA 57.679 50.000 0.00 0.00 0.00 4.35
3544 5361 7.639162 AATTTTTATCGCATCTACTACTCCG 57.361 36.000 0.00 0.00 0.00 4.63
3562 5379 9.878599 CGTAAGAGTCATGTGTCTTTAATTTTT 57.121 29.630 14.71 0.00 43.02 1.94
3563 5380 9.052759 ACGTAAGAGTCATGTGTCTTTAATTTT 57.947 29.630 14.71 0.00 43.62 1.82
3564 5381 8.603242 ACGTAAGAGTCATGTGTCTTTAATTT 57.397 30.769 14.71 0.00 43.62 1.82
3565 5382 9.701098 TTACGTAAGAGTCATGTGTCTTTAATT 57.299 29.630 14.71 0.00 43.62 1.40
3566 5383 9.871238 ATTACGTAAGAGTCATGTGTCTTTAAT 57.129 29.630 14.25 10.97 43.62 1.40
3569 5386 9.701098 TTTATTACGTAAGAGTCATGTGTCTTT 57.299 29.630 14.25 3.78 43.62 2.52
3570 5387 9.355215 CTTTATTACGTAAGAGTCATGTGTCTT 57.645 33.333 14.25 14.17 43.62 3.01
3571 5388 8.521176 ACTTTATTACGTAAGAGTCATGTGTCT 58.479 33.333 14.25 0.00 43.62 3.41
3572 5389 8.584600 CACTTTATTACGTAAGAGTCATGTGTC 58.415 37.037 14.25 0.00 43.62 3.67
3573 5390 8.086522 ACACTTTATTACGTAAGAGTCATGTGT 58.913 33.333 14.25 14.23 43.62 3.72
3574 5391 8.373256 CACACTTTATTACGTAAGAGTCATGTG 58.627 37.037 14.25 17.02 43.62 3.21
3575 5392 7.063074 GCACACTTTATTACGTAAGAGTCATGT 59.937 37.037 14.25 10.32 43.62 3.21
3576 5393 7.391786 GCACACTTTATTACGTAAGAGTCATG 58.608 38.462 14.25 15.63 43.62 3.07
3577 5394 6.252869 CGCACACTTTATTACGTAAGAGTCAT 59.747 38.462 14.25 5.71 43.62 3.06
3578 5395 5.570206 CGCACACTTTATTACGTAAGAGTCA 59.430 40.000 14.25 0.00 43.62 3.41
3579 5396 5.498226 GCGCACACTTTATTACGTAAGAGTC 60.498 44.000 14.25 5.59 43.62 3.36
3580 5397 4.325472 GCGCACACTTTATTACGTAAGAGT 59.675 41.667 14.25 13.56 43.62 3.24
3581 5398 4.325204 TGCGCACACTTTATTACGTAAGAG 59.675 41.667 5.66 12.97 43.62 2.85
3582 5399 4.236147 TGCGCACACTTTATTACGTAAGA 58.764 39.130 5.66 6.33 43.62 2.10
3583 5400 7.349234 TGCTGCGCACACTTTATTACGTAAG 62.349 44.000 5.66 4.18 37.12 2.34
3584 5401 3.181528 GCTGCGCACACTTTATTACGTAA 60.182 43.478 5.66 11.02 0.00 3.18
3585 5402 2.346244 GCTGCGCACACTTTATTACGTA 59.654 45.455 5.66 0.00 0.00 3.57
3586 5403 1.127951 GCTGCGCACACTTTATTACGT 59.872 47.619 5.66 0.00 0.00 3.57
3587 5404 1.127766 TGCTGCGCACACTTTATTACG 59.872 47.619 5.66 0.00 31.71 3.18
3588 5405 2.774007 CTGCTGCGCACACTTTATTAC 58.226 47.619 5.66 0.00 33.79 1.89
3589 5406 1.130373 GCTGCTGCGCACACTTTATTA 59.870 47.619 5.66 0.00 33.79 0.98
3590 5407 0.109597 GCTGCTGCGCACACTTTATT 60.110 50.000 5.66 0.00 33.79 1.40
3591 5408 1.236616 TGCTGCTGCGCACACTTTAT 61.237 50.000 5.66 0.00 43.34 1.40
3592 5409 1.236616 ATGCTGCTGCGCACACTTTA 61.237 50.000 18.32 0.00 43.61 1.85
3593 5410 2.467946 GATGCTGCTGCGCACACTTT 62.468 55.000 18.32 5.52 43.61 2.66
3594 5411 2.974489 GATGCTGCTGCGCACACTT 61.974 57.895 18.32 5.84 43.61 3.16
3595 5412 3.429141 GATGCTGCTGCGCACACT 61.429 61.111 18.32 6.15 43.61 3.55
3596 5413 4.806481 CGATGCTGCTGCGCACAC 62.806 66.667 18.32 1.41 43.61 3.82
3598 5415 2.588146 AAATCGATGCTGCTGCGCAC 62.588 55.000 18.32 4.25 43.61 5.34
3599 5416 2.400962 AAATCGATGCTGCTGCGCA 61.401 52.632 10.98 10.98 45.10 6.09
3600 5417 1.937846 CAAATCGATGCTGCTGCGC 60.938 57.895 11.21 0.00 43.34 6.09
3601 5418 0.652071 TACAAATCGATGCTGCTGCG 59.348 50.000 11.21 4.76 43.34 5.18
3602 5419 1.003116 CCTACAAATCGATGCTGCTGC 60.003 52.381 8.89 8.89 40.20 5.25
3603 5420 2.554142 TCCTACAAATCGATGCTGCTG 58.446 47.619 0.00 0.00 0.00 4.41
3604 5421 2.939103 GTTCCTACAAATCGATGCTGCT 59.061 45.455 0.00 0.00 0.00 4.24
3605 5422 2.285834 CGTTCCTACAAATCGATGCTGC 60.286 50.000 0.00 0.00 0.00 5.25
3606 5423 3.186909 TCGTTCCTACAAATCGATGCTG 58.813 45.455 0.00 2.11 0.00 4.41
3607 5424 3.520290 TCGTTCCTACAAATCGATGCT 57.480 42.857 0.00 0.00 0.00 3.79
3608 5425 4.120646 CATCGTTCCTACAAATCGATGC 57.879 45.455 0.00 0.00 46.39 3.91
3610 5427 4.665833 TCCATCGTTCCTACAAATCGAT 57.334 40.909 0.00 0.00 40.95 3.59
3611 5428 4.142026 ACATCCATCGTTCCTACAAATCGA 60.142 41.667 0.00 0.00 35.14 3.59
3612 5429 4.119862 ACATCCATCGTTCCTACAAATCG 58.880 43.478 0.00 0.00 0.00 3.34
3613 5430 5.235186 CAGACATCCATCGTTCCTACAAATC 59.765 44.000 0.00 0.00 0.00 2.17
3614 5431 5.118990 CAGACATCCATCGTTCCTACAAAT 58.881 41.667 0.00 0.00 0.00 2.32
3615 5432 4.020573 ACAGACATCCATCGTTCCTACAAA 60.021 41.667 0.00 0.00 0.00 2.83
3616 5433 3.513912 ACAGACATCCATCGTTCCTACAA 59.486 43.478 0.00 0.00 0.00 2.41
3617 5434 3.096852 ACAGACATCCATCGTTCCTACA 58.903 45.455 0.00 0.00 0.00 2.74
3618 5435 3.802948 ACAGACATCCATCGTTCCTAC 57.197 47.619 0.00 0.00 0.00 3.18
3619 5436 3.132289 GGAACAGACATCCATCGTTCCTA 59.868 47.826 11.42 0.00 42.54 2.94
3620 5437 2.093447 GGAACAGACATCCATCGTTCCT 60.093 50.000 11.42 0.00 42.54 3.36
3621 5438 2.093447 AGGAACAGACATCCATCGTTCC 60.093 50.000 10.85 10.85 44.15 3.62
3622 5439 3.252974 AGGAACAGACATCCATCGTTC 57.747 47.619 0.00 0.00 39.55 3.95
3623 5440 3.769844 ACTAGGAACAGACATCCATCGTT 59.230 43.478 0.00 0.00 39.55 3.85
3624 5441 3.366396 ACTAGGAACAGACATCCATCGT 58.634 45.455 0.00 0.00 39.55 3.73
3625 5442 4.557695 GCTACTAGGAACAGACATCCATCG 60.558 50.000 0.00 0.00 39.55 3.84
3626 5443 4.342378 TGCTACTAGGAACAGACATCCATC 59.658 45.833 0.00 0.00 39.55 3.51
3627 5444 4.290093 TGCTACTAGGAACAGACATCCAT 58.710 43.478 0.00 0.00 39.55 3.41
3628 5445 3.708451 TGCTACTAGGAACAGACATCCA 58.292 45.455 0.00 0.00 39.55 3.41
3629 5446 4.342378 TGATGCTACTAGGAACAGACATCC 59.658 45.833 0.00 0.00 37.22 3.51
3630 5447 5.521906 TGATGCTACTAGGAACAGACATC 57.478 43.478 0.00 0.00 34.63 3.06
3631 5448 4.202202 GCTGATGCTACTAGGAACAGACAT 60.202 45.833 16.14 0.00 38.42 3.06
3632 5449 3.131223 GCTGATGCTACTAGGAACAGACA 59.869 47.826 16.14 0.00 38.42 3.41
3633 5450 3.712187 GCTGATGCTACTAGGAACAGAC 58.288 50.000 16.14 6.37 38.42 3.51
3634 5451 2.359214 CGCTGATGCTACTAGGAACAGA 59.641 50.000 16.14 0.00 38.42 3.41
3635 5452 2.736978 CGCTGATGCTACTAGGAACAG 58.263 52.381 9.66 9.66 38.99 3.16
3636 5453 1.202417 GCGCTGATGCTACTAGGAACA 60.202 52.381 0.00 0.00 36.97 3.18
3637 5454 1.202417 TGCGCTGATGCTACTAGGAAC 60.202 52.381 9.73 0.00 36.97 3.62
3638 5455 1.067669 CTGCGCTGATGCTACTAGGAA 59.932 52.381 9.73 0.00 36.97 3.36
3639 5456 0.670706 CTGCGCTGATGCTACTAGGA 59.329 55.000 9.73 0.00 36.97 2.94
3640 5457 0.670706 TCTGCGCTGATGCTACTAGG 59.329 55.000 13.46 0.00 36.97 3.02
3641 5458 1.335780 CCTCTGCGCTGATGCTACTAG 60.336 57.143 17.78 3.36 36.97 2.57
3642 5459 0.670706 CCTCTGCGCTGATGCTACTA 59.329 55.000 17.78 0.00 36.97 1.82
3643 5460 1.440893 CCTCTGCGCTGATGCTACT 59.559 57.895 17.78 0.00 36.97 2.57
3644 5461 2.243264 GCCTCTGCGCTGATGCTAC 61.243 63.158 28.37 10.56 36.97 3.58
3645 5462 1.109323 TAGCCTCTGCGCTGATGCTA 61.109 55.000 33.93 33.93 44.33 3.49
3646 5463 1.756408 ATAGCCTCTGCGCTGATGCT 61.756 55.000 35.56 35.56 44.33 3.79
3647 5464 0.883814 AATAGCCTCTGCGCTGATGC 60.884 55.000 28.41 28.41 44.33 3.91
3648 5465 0.866427 CAATAGCCTCTGCGCTGATG 59.134 55.000 17.78 15.60 44.33 3.07
3649 5466 0.883814 GCAATAGCCTCTGCGCTGAT 60.884 55.000 17.78 5.79 44.33 2.90
3650 5467 1.522355 GCAATAGCCTCTGCGCTGA 60.522 57.895 16.55 16.55 44.33 4.26
3651 5468 1.164662 ATGCAATAGCCTCTGCGCTG 61.165 55.000 9.73 8.88 44.33 5.18
3652 5469 1.147824 ATGCAATAGCCTCTGCGCT 59.852 52.632 9.73 0.00 44.33 5.92
3653 5470 1.281960 CATGCAATAGCCTCTGCGC 59.718 57.895 0.00 0.00 44.33 6.09
3654 5471 0.585357 GACATGCAATAGCCTCTGCG 59.415 55.000 0.00 0.00 44.33 5.18
3655 5472 0.585357 CGACATGCAATAGCCTCTGC 59.415 55.000 0.00 0.00 41.13 4.26
3656 5473 1.596260 CACGACATGCAATAGCCTCTG 59.404 52.381 0.00 0.00 41.13 3.35
3657 5474 1.482182 TCACGACATGCAATAGCCTCT 59.518 47.619 0.00 0.00 41.13 3.69
3658 5475 1.939974 TCACGACATGCAATAGCCTC 58.060 50.000 0.00 0.00 41.13 4.70
3659 5476 2.009774 GTTCACGACATGCAATAGCCT 58.990 47.619 0.00 0.00 41.13 4.58
3660 5477 1.267532 CGTTCACGACATGCAATAGCC 60.268 52.381 0.00 0.00 43.02 3.93
3661 5478 1.267532 CCGTTCACGACATGCAATAGC 60.268 52.381 0.00 0.00 43.02 2.97
3662 5479 1.267532 GCCGTTCACGACATGCAATAG 60.268 52.381 0.00 0.00 43.02 1.73
3663 5480 0.724549 GCCGTTCACGACATGCAATA 59.275 50.000 0.00 0.00 43.02 1.90
3664 5481 0.955428 AGCCGTTCACGACATGCAAT 60.955 50.000 0.00 0.00 43.02 3.56
3665 5482 1.565156 GAGCCGTTCACGACATGCAA 61.565 55.000 0.00 0.00 43.02 4.08
3666 5483 2.027073 GAGCCGTTCACGACATGCA 61.027 57.895 0.00 0.00 43.02 3.96
3667 5484 2.027073 TGAGCCGTTCACGACATGC 61.027 57.895 0.00 0.00 43.02 4.06
3668 5485 1.781555 GTGAGCCGTTCACGACATG 59.218 57.895 0.00 0.00 46.13 3.21
3669 5486 4.261888 GTGAGCCGTTCACGACAT 57.738 55.556 0.00 0.00 46.13 3.06
3675 5492 0.465460 AAGCCAAAGTGAGCCGTTCA 60.465 50.000 0.00 0.00 0.00 3.18
3676 5493 0.238553 GAAGCCAAAGTGAGCCGTTC 59.761 55.000 0.00 0.00 0.00 3.95
3677 5494 0.465460 TGAAGCCAAAGTGAGCCGTT 60.465 50.000 0.00 0.00 0.00 4.44
3678 5495 0.886490 CTGAAGCCAAAGTGAGCCGT 60.886 55.000 0.00 0.00 0.00 5.68
3679 5496 0.603707 TCTGAAGCCAAAGTGAGCCG 60.604 55.000 0.00 0.00 0.00 5.52
3680 5497 1.609208 TTCTGAAGCCAAAGTGAGCC 58.391 50.000 0.00 0.00 0.00 4.70
3681 5498 3.930634 AATTCTGAAGCCAAAGTGAGC 57.069 42.857 0.00 0.00 0.00 4.26
3682 5499 5.163774 GCTCTAATTCTGAAGCCAAAGTGAG 60.164 44.000 0.00 0.00 0.00 3.51
3683 5500 4.697352 GCTCTAATTCTGAAGCCAAAGTGA 59.303 41.667 0.00 0.00 0.00 3.41
3684 5501 4.456911 TGCTCTAATTCTGAAGCCAAAGTG 59.543 41.667 0.00 0.00 0.00 3.16
3685 5502 4.655963 TGCTCTAATTCTGAAGCCAAAGT 58.344 39.130 0.00 0.00 0.00 2.66
3686 5503 5.589452 AGATGCTCTAATTCTGAAGCCAAAG 59.411 40.000 0.00 0.00 0.00 2.77
3687 5504 5.503927 AGATGCTCTAATTCTGAAGCCAAA 58.496 37.500 0.00 0.00 0.00 3.28
3688 5505 5.108187 AGATGCTCTAATTCTGAAGCCAA 57.892 39.130 0.00 0.00 0.00 4.52
3689 5506 4.767578 AGATGCTCTAATTCTGAAGCCA 57.232 40.909 0.00 0.00 0.00 4.75
3690 5507 5.121811 TGAAGATGCTCTAATTCTGAAGCC 58.878 41.667 0.00 0.00 0.00 4.35
3691 5508 5.277442 GCTGAAGATGCTCTAATTCTGAAGC 60.277 44.000 0.00 0.00 0.00 3.86
3692 5509 5.236911 GGCTGAAGATGCTCTAATTCTGAAG 59.763 44.000 0.00 0.00 0.00 3.02
3693 5510 5.121811 GGCTGAAGATGCTCTAATTCTGAA 58.878 41.667 0.00 0.00 0.00 3.02
3694 5511 4.701765 GGCTGAAGATGCTCTAATTCTGA 58.298 43.478 0.00 0.00 0.00 3.27
3695 5512 3.493877 CGGCTGAAGATGCTCTAATTCTG 59.506 47.826 0.00 0.00 0.00 3.02
3696 5513 3.726607 CGGCTGAAGATGCTCTAATTCT 58.273 45.455 0.00 0.00 0.00 2.40
3697 5514 2.222911 GCGGCTGAAGATGCTCTAATTC 59.777 50.000 0.00 0.00 0.00 2.17
3698 5515 2.216898 GCGGCTGAAGATGCTCTAATT 58.783 47.619 0.00 0.00 0.00 1.40
3699 5516 1.871408 CGCGGCTGAAGATGCTCTAAT 60.871 52.381 0.00 0.00 0.00 1.73
3700 5517 0.528466 CGCGGCTGAAGATGCTCTAA 60.528 55.000 0.00 0.00 0.00 2.10
3701 5518 1.066422 CGCGGCTGAAGATGCTCTA 59.934 57.895 0.00 0.00 0.00 2.43
3702 5519 2.202851 CGCGGCTGAAGATGCTCT 60.203 61.111 0.00 0.00 0.00 4.09
3703 5520 3.934684 GCGCGGCTGAAGATGCTC 61.935 66.667 8.83 0.00 0.00 4.26
3720 5537 1.580066 TATGAGGGGCCTGTTTGGGG 61.580 60.000 0.84 0.00 36.00 4.96
3721 5538 0.557729 ATATGAGGGGCCTGTTTGGG 59.442 55.000 0.84 0.00 36.00 4.12
3722 5539 1.215173 TCATATGAGGGGCCTGTTTGG 59.785 52.381 0.84 0.00 39.35 3.28
3723 5540 2.734755 TCATATGAGGGGCCTGTTTG 57.265 50.000 0.84 0.00 0.00 2.93
3724 5541 3.979501 AATCATATGAGGGGCCTGTTT 57.020 42.857 11.78 0.00 0.00 2.83
3725 5542 3.979501 AAATCATATGAGGGGCCTGTT 57.020 42.857 11.78 0.00 0.00 3.16
3726 5543 3.979501 AAAATCATATGAGGGGCCTGT 57.020 42.857 11.78 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.