>input_sequence_43722
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------------ATGGCGCCGTCGCAGCCCAAGTCAGGGCTCTTCGTGGGCATCAACAAGGGCCACGTCGTCACCAAGCG
CGAGCTGCCGCCACGCCCGTCCGACCGGAAGGGGGTAA---GCAGCCTCCCACCCCCACTGTCCTAGTTTCTCC-C---C
ATTCCTTTTCTGCCATTTGGTCTCCTTGTGCAATTGATCTACCCATG----CATATTATGATGGCTTCTG--CTTGTTGT
TTAGGC-----------------------------------------------TTATTCA---------TGTGTTCAGGC
TGGTGAGATGTTGACATTCATT-GCAGTAT------TTTGTGCTTGTTTGAATACTATCTTGGTGTACGTGTATCTTTGT
TGTAGTTATGATCCAGAAGAGG-TAGTGCTCTAAGTGTT-AGAGCATTGTAGCATAGTTTGATTGATATTACTGAAGGTC
CCAGCTTGTCTGGTTAAGTG--TGTGACGTGTATCTTGCAATTACATGAAAGCCC----TCAAAACTGAGGACTAAG---
----AGAATGTAC---ATATTGAGGCCAGCCTGGTGCCTGTAATTCTTG-------------------------------
---------GAACTCCCAAGTTGCTAGCCCTGCAGGC----------------TCAAATGTGCCAGCTTAATCAAGTACT
CCCTCTGTCCCATAACATAAGAGCGTTTTTTGACACCA------------------------------------------
------------ACTTTCTAATTCTGTGTTAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TAAATGCAGTTTTGAACATCTCGT-----------
--------------------------------------------------------------------------------
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----------------AGCTTTAGTTTTAATT-TCCTATTGTTGC-----------------------------------
------------------------TCATGTGTTGATCTGGCTATTCTTCCTGACTTGA-TTACTGATACAGACATGTT--
-----------------------------------GT--ATTTTCATCCCTTGCATATTATTTAATCAATTAGTACTAGC
TTGTCATGTTAAAACTCAAAATAGAACTTGCTACTCGCTCTGTCACATAATATAAGAACGTTTTTCTAGCTGTTTTAGCT
TGAAAAACGATCTTATATTATGGGACAGAGGGAGTAGTTTTGAAGCAAATTAACTATCTATACACGACATATAATGCCCA
AACAAAAACAAAACTGAGTTATTTGGCCATTGTAGTTGGCTATTTTTAACAA------AACTTGTGGGAAACTAAAACAA
AGTCAACTTTGCATTTGTATGTTTCTCTGCTTTTTC---AATAATTT-GTACATGTCTATTCAGTTTGTATTTTC-TTTA
CATTGTT---ATCTTGGACAATTTTTGCAGAAAGGTACCAAGAGGGTGCTGTTTGTCCGGAACTTGATTAGGGAGGTTGC
TGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGTGCACTCAAGGTCGCCAAGA
GGAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGGGAGGAGATGTCAAGTGTCCTCAGGAAGATGAGGTGTGTAACC
ACT-GTCTTATTATTGCAGTTTATATTATGGACACTATTTTACTATGTTATCCTATAGTTCA-TTTTCCTTTTTGTTCTA
G-----------------------------A----------------------------TAATTCGTCCTCTTACATCAT
GAATGATGAATTT-GTTGATCACTAGTTGCTTCGGTGGCTTCCAACAATGTTTTTTAAATGCCCCTTTTCAAGCCAGTGG
CTTTTCTATATTGCAAGTAGTGTAGGCTGTAGACAACAGCATCAACTTGGAAGATGTCAGTGCTATGGTGCTGTAGACAA
TGGAGCAACCTTGGTCATAATCATTGTTGTTTTATGTGGTTCTTTAGTTGTTTCTTTTGCTTGACCAAAGTCCATTCGTC
CTACCAATCAGGAAACATAAATAGCTCCTGTAATTTCTTTTTCCCTATAACAATAATGTATATGAATGAGCTCATTGTTC
TGTC-----ATGTAGGTCTGGTGGTGGTGGTGCTGCGGACAAGAAGAAATAG----------------------------
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-------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G352800
AGAGAGATATGTCAAGCCCCATGGACTATGAAGATATTGACAACCTCGCCAGGCCTCGCGGGACCACAAACCACATCCAA
GCATTTGTTGAGGCATAGTGGAAGATTGAAGACATGGCCTCACATCATCAGCCGAAAGAAGGATCTCATTGAGCATCATT
AGCAGCTAGGTATGAGATAGTCTATCTAAATTGCTTTTAAACTTGTTTTATTTTTACTTGAACAATTGGTTTGATCGCAT
T--TTGTTGCATTTGGATTATTCATTGTATTCAGAGATGGTTTGTAATAATAATTGTTGAAATATGCTCATTATTTATTT
T-AAATTATTATAAATAGGCTAGAAAGAACGTATGACCAATGACAGATGGGACCTACTTGCATGAAAACAATATGAAGGC
CATA-TTATGAAGACTCTGTATTTGCGCACAACTTTCACAATGTTCAAAATATTATAGAGCACAATACATATAAAATTTG
TTGTACTAAATCAGCGACAATTAATATGGATCAGAGATAGTAGAATTTTCTAATGGTTTATCACAA------AGAGAGAT
CAAAAATAAAAACTAGAAACAGTCCTTCTATATATTTTTTGAGACAAAGGCAGACTTTCTCTAGA---------------
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-----------------AAAAGAAAAAGGGGGCAGAAACAATTT----------AGTGACTTCGGTCCGATCATGAGCCA
TCATCACCCAGCTACCAAAATGAGGCCTAGCAAGCCCACTCGCCAGGCCCATGTGTTTGGCAGGAGGAGGGGAGACCTCG
CCTCGCGCACAGGCGAGCATATATAAAAGGGCGTCCGCCAATCTAGGGTTTTCTTCTGGGACGCAGGCGGCGGCTTAGGG
TTTTAACTCGCATCCATTCTCAAGGTAAGCCAGCAAGCACGCGCACCAAGCGCCGCCTCCTCCTCCACGAACCTCGATTC
AGATCGCCCTTCACCTCACCTGGGCTCCTGTTTGATTATTCCGGTTTGTTCTTGTTCCATTGCGCCCTTCTCAGGTTAGC
AGGAGACCGGCCATGGCGCCGTCGCAGCCCAAGTCAGGGCTCTTCGTGGGCATCAACAAGGGCCACGTCGTCACCAAGCG
CGAGCTGCCGCCACGCCCGTCCGACCGGAAGGGGGTAA---GCAGCCTCCCACCCCCACTGTCCTAGTTTCTCC-C---C
ATTCCTTTTCTGCCATTTGGTCTCCTTGTGCAATTGATCTACCCATG----CATATTATGATGGCTTCTG--CTTGTTGT
TTAGGC-----------------------------------------------TTATTCA---------TGTGTTCAGGC
TGGTGAGATGTTGACATTCATT-GCAGTAT------TTTGTGCTTGTTTGAATACTATCTTGGTGTACGTGTATCTTTGT
TGTAGTTATGATCCAGAAGAGG-TAGTGCTCTAAGTGTT-AGAGCATTGTAGCATAGTTTGATTGATATTACTGAAGGTC
CCAGCTTGTCTGGTTAAGTG--TGTGACGTGTATCTTGCAATTACATGAAAGCCC----TCAAAACTGAGGACTAAG---
----AGAATGTAC---ATATTGAGGCCAGCCTGGTGCCTGTAATTCTTG-------------------------------
---------GAACTCCCAAGTTGCTAGCCCTGCAGGC----------------TCAAATGTGCCAGCTTAATCAAGTACT
CCCTCTGTCCCATAACATAAGAGCGTTTTTTGACACCA------------------------------------------
------------ACTTTCTAATTCTGTGTTAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TAAATGCAGTTTTGAACATCTCGT-----------
--------------------------------------------------------------------------------
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----------------AGCTTTAGTTTTAATT-TCCTATTGTTGC-----------------------------------
------------------------TCATGTGTTGATCTGGCTATTCTTCCTGACTTGA-TTACTGATACAGACATGTT--
-----------------------------------GT--ATTTTCATCCCTTGCATATTATTTAATCAATTAGTACTAGC
TTGTCATGTTAAAACTCAAAATAGAACTTGCTACTCGCTCTGTCACATAATATAAGAACGTTTTTCTAGCTGTTTTAGCT
TGAAAAACGATCTTATATTATGGGACAGAGGGAGTAGTTTTGAAGCAAATTAACTATCTATACACGACATATAATGCCCA
AACAAAAACAAAACTGAGTTATTTGGCCATTGTAGTTGGCTATTTTTAACAA------AACTTGTGGGAAACTAAAACAA
AGTCAACTTTGCATTTGTATGTTTCTCTGCTTTTTC---AATAATTT-GTACATGTCTATTCAGTTTGTATTTTC-TTTA
CATTGTT---ATCTTGGACAATTTTTGCAGAAAGGTACCAAGAGGGTGCTGTTTGTCCGGAACTTGATTAGGGAGGTTGC
TGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGTGCACTCAAGGTCGCCAAGA
GGAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGGGAGGAGATGTCAAGTGTCCTCAGGAAGATGAGGTGTGTAACC
ACT-GTCTTATTATTGCAGTTTATATTATGGACACTATTTTACTATGTTATCCTATAGTTCA-TTTTCCTTTTTGTTCTA
G-----------------------------A----------------------------TAATTCGTCCTCTTACATCAT
GAATGATGAATTT-GTTGATCACTAGTTGCTTCGGTGGCTTCCAACAATGTTTTTTAAATGCCCCTTTTCAAGCCAGTGG
CTTTTCTATATTGCAAGTAGTGTAGGCTGTAGACAACAGCATCAACTTGGAAGATGTCAGTGCTATGGTGCTGTAGACAA
TGGAGCAACCTTGGTCATAATCATTGTTGTTTTATGTGGTTCTTTAGTTGTTTCTTTTGCTTGACCAAAGTCCATTCGTC
CTACCAATCAGGAAACATAAATAGCTCCTGTAATTTCTTTTTCCCTATAACAATAATGTATATGAATGAGCTCATTGTTC
TGTC-----ATGTAGGTCTGGTGGTGGTGGTGCTGCGGACAAGAAGAAATAGATTTTGCATGTTGGTGAAATTCTATTTA
TCTCAATGCGTTGCCCCGTATTTCCATATTATGCCAAGTCTGTAGTCTGTAGCCTGTGGCAAT-----------------
-TTCAAGTTCAGAGTCAAACTATGAATTTTCGACAC--TATATTTGCAAGTGGAGTAACATGGTAGTACATTGCATTCTG
AGTTCAGAGTAAAACCGTGAGTTTTTGGCACTATC-TTAGTGGGTGGTTTCTATTTTGAGAATACCTATCACCTTTTCTT
CACAGAAATCAAGCGTCTTTGTTTTATTACTTTAATATCCGAGCTATCTGTATGGCGATGGTCGTATGTTCTTC-CCAGA
CCTTATTGATCTGGGCAGTAAAGCAGGTTTGATTTTGTATCCTTTAGGACCTTGAGAACTTGGGCCCTGTTTGTCCTTAA
TGCCCCTTCGGTGGGGGAGTGTGCGGTTTTCATGGTCTGACAGCCCATTTAGTAATGGCCCCTTCGGTGGAGAAGTGTGC
GCGGCATCGCTGGAAACAAAATCATATGGCCAAAACTGGTTGAAACTGGTTGTTTTCCAGCTCAAAAAACTGGTTGTTTC
CAATGCATGATGC-------------------------------ATTATCGGACGAGGAGTTTACACTCATGGTGGTCGG
CCTGGTAGCTATCTGGTCAGCACGGACGAAAGCAATTCATGAGAATATATACCATAGTGGCATAGTCCGTTTGCAACTCA
TGGATTCAAAGAATATATACCATAGTGGC----ATACTCCCTCCGG-CCTAGTGTCAAAAAAGCGC---ACATTATGTGA
CGGAGTAGTAGATGCGATAAAAATTAAAGACACATGACTCTTACGTAATAAAGTGTGCGCAGCAGCATCGATTTGTAGGA
ACGATGGATGTCTGTTCCTAGTAGCATCAGCGCAGAGGCTATTGCATGTCGTGAACGGCTCACTTTGGCTTCAGAATTAG
AGCATCTTCAGCCGCGCCCCAAACAGGCCCCTCATATGATTTTTTTCGCTCCGGCGCCGAAAAAACGTCCCAG
>chr3B_1
AGAGGGATATGCCAGGCCCCATGGACTATGAAGATATTGACAATGTCGCAAAGCCTCGCGGGAACGCAAAGCACATTCAA
GCATTTGTTGAGGCGTATCGGAAGATTGAAGACATGGCCTCACATCATCAGCCGAAAGAAGGATCTCACCAAGCATCATT
GGCATCTAGGTAGGAGATAGTGTGTCTAAATTGCTTTTAAAACTTGTTTTATTTTTACATTCAA----------------
--------GCGTTTGGATTATTCATTGTATTCAAAGATGGTTTGTAATAATAATTGTTGGAATATGCTCATTATTTATTT
C-AAATTATTATAAATAGGCTAGAAAGAACGCATGACCAATGACATCTGGGTCCTATTTGCAGGAAA--AATATGAAGGC
TATATT-ATGACGACCCTGTA--------------TCACAATATTCAAAAAATTATAGAGCACACTACATATAAAAGTTA
TTATACTAAATCAACGACAATTAATATGGACAGGG---AGTAGAGAGAGAGAG---------------------------
-----ATAAAAACTAGAGGCAATCCTTCTGTAGAAAAATAAAGGGATAATTAATTTGGTGCCCTTAGTTGTGTCCCACTC
GATAGGTTTACCCCTAGTTTCCGAAAACACTTGTTCCTGCCCAAACCACTTTGCTCCTCTTATGCTTTTGCCCTTTGACC
GTTTGACCATCACTTTGAAAACTTCATAAAAAATTCATACTAATTCAGAAAAATTCGAATAAGATATCAAAATGTTCATA
AAAGCATCACCTATACGTGCATGTCATTTGCATTCATGAAAAAAGTGTTGGCCGGTCCCCATCTTAGTTTTAGCTCATAT
GACCTTAGCATGAATAGTAAAATCTAAAAAAAATTCTAAAAAATATTTAAAAAATTGGTGGCAAACTTTGACCAATATTT
TCAATGCTTGCTAGGTTTCATAAGGGAATGACATTTGTGAAAGTCGTGGCAAAAAATCAAAAATCAATGCTCCAAAATTA
AATTTTTGTGCCACGATTTCCACGAATGTCATTCCCTTATGAAACTTGGCAAGCACTCAAAACATTGGTCAAAGTTTGCC
ACCAATTTTTTTTTAGAATTTTTAGAATTTTTTAGATTTTACTATTCATGCTAAGGTCATATGAGCTAAAACTAAGATGG
GGATTGGCCAACACTTTTTTTCATGAATGCAAATGACATGCACATATAGGTGATGCTTTTCTGAACATTTTGATATCTTA
TTTGAATTTTTCCGAGTTAGTATGAATTTTTTATGAAATTTTCAAAGTGATGGTCAAACGGTCAAATGACAAAAGCATAA
GAGGAGCAAAGTGGTTTGGGCAGGAACAAGTGTTTTCGGAAACTAGGGGTAAACCTGCCGAGTGTAACCCAACTAGGGCC
ATAAAATCAATTATCCCAAAAAGAAAAGGGGGCCGAAACAATTTAGACTTATCCAGTGACTTCGGTCGAATCATGGCCCA
TCATCACCCAGCTACCAAAATGAGGCCTAGTAAGCCCACTCGCCAGGCCCATATGTTTGGCAGGAGGAGAGGAG-----G
CCTCGCGCACAGGCGAGCATATATAAAACGGCGTCCGCCAATCTAGGG-TTTCTTCTCGGACGCAGGCGGCGGCTTAGGG
TTTTAACTCGCATCCATTCTCAAGGTAAGCCAGCAAGCACGCGCGCCAAGCGCCGCCTTCTCCATCACGAACCTCGATTC
AGACCGCCCTTCACCTCACCCGGGCTCCTGTTTGATTATTCCGGTTTGTTCTTGTTCCATTGCGCCCGTCTCAGGTTAGC
AGGAGACCGGCCATGGCGCCGTTGCAGCCCAAGTCAGGGCTCTTCGTCGGCATCAACAAGGGCCACGTCGTCACCAAGCG
CGAGCTGCCGCCTCGCCCGTCCGACCGCAAGGGGGTAA---GCAGTCTCCCACCTCCGCCGTCCTAGTTTCTCC-CCCAC
ATTCTTTTTCTGCCATGTGGCCTCCTTGTGCAATTGATCCACCCATG----CATATTATGATGAGTTCTG--CTTGTTGT
TTAGGCTTGTGCTTGTTCGGTAGTTCCTGCCATAGCTGATGCGTATCAGTTTCTTGTTCGATAACAAACTGTGTTCAGCC
TGGCAAGATATCGGCATTCAATCGCAGTGA------TTTGTGCTTGTTTGAATACTATCGTGGTGTACGTGTATCTTTGT
TGTAGTTATGATCCAGAAC-GG-TAGTGTTCTAAGTGTAGT----ATTGTAGCATAGTTTGATTGACATTACTGAAGGTC
CCAGGTTGTCTGGTTAAATG--TGTGAGCGGCCTCTTGCAATTACAAGACAGCCC----TCAAAACTGAGGACTACG---
----AAAATGTAC---ATATTGAGGCCAGCCTGGTGCCTGTAATTCTTG-------------------------------
---------GAACTCCCAAGTTGCTAGCCCTGCAGGC----------------TCAAATGTGCCAGCTTAATTAAGTACT
CCCTCCGTCCCATAATAAGTGTCTCAACCTTAGTACAACTTTGTACTAAACTTAGTACAAAGTTGAGACACTTATTCTGG
GACGGAGGGAGTACTTTATAATTCCGTGTTAA------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------TAAATGCAGTTTTGAACATCTCGT-----------
--------------------------------------------------------------------------------
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----------------GGCCTTAGTTTTATTT-TCCTATTGTTGC-----------------------------------
------------------------TCATGTGTCGATCTGGCTATTCTTTCTGACTTGA-TTACTGCTACAGGCATGTT--
-----------------------------------TT--ATTTTCATCCATTGCATATTATTTAATCAATTAGTACTATC
TTGTCATGTTAAAACTCAAAATAGAACTTGC-------------------------------------------------
----------------------------------TAGTTTTGAAGCAAATTAACTATCTATACACGACATA--ATGCCCA
AACAAAAACAAAACTGAGTTATTTGGCCATTGTAGTTGGCTATTTTTAACAA------AACTTGTGGGAAACTAAAACAA
AGTGAACTTTGCATTTGTATGTTTCTCTGCTTTTTC---AATAATTTTGTACATGTCTATTCAGTTTATATTTTC-TTTA
CATTGTTATAATCTTGGACAATTTTTGCAGAAAGGTACCAAGAGGGTGCTGTTTGTCAGGAACTTGATTAGGGAGGTCGC
TGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGCGCACTCAAGGTCGCCAAGA
GGAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGGGAGGAGATGTCAAGTGTCCTCAGGAAGATGAGGTGTGTAGCC
ACTAGTCTTATCATTGCAGTTTATATTATGGACACTATTTTACTATGTTATCCTATAGTTCA-TTTTCCTTTTTGTTCTA
G-----------------------------ACGACTTGGTTACAAAGGTCACTAGTGCATAATTCGTCCTCTTACATCAT
GAATGATTAATTT-GTTGATCACTAATTGCTGAGGTGGCTTCCATCAATGCTTTTTAAATGTCCCTTTTCAAGCCAGTGA
CTTTTCTATATTGCAAGTAGTGTAGGCTGTAGACAACAGCATTAACTTGTAAGATGTCAGTGTTATGGTGCT-TAGACAA
TGGAGCAACCTTGGTCATAATCTC-GTTG-TTTATGTGGTTCTTTAATTGTTTCTTTTGCTTGACCGAAGTCCATTCATC
CTACCAATCAGGAAACATAAATAGCTCCTGTAATTTCTTTTTCCCTGTAACAATAATATATATGAATGGGCTCATTGTTC
TCTTCTGGTATGTAGGTCTGGTGGTGGTGGTGCTACGGACAAGAAGAAATAGATTTTGCATGTTG----------ATTTA
TCTCAATGCTTTGCCCTGTATTTCCACATTATGCCAAGTTTGTAGCCTGTGGCAATTGGAGACGAATGTAGTACATTGCA
CTTCAAGTTCAGAGTCAAACTATGAATTTTTGACAC--TAT--TTGCAATTGGAGTGACATGGTAGTACATTGCATTCTG
-------------------AGTTTTTGGCACTATCTTTAGTGCGTGGTTTCTA-TTTGAGAATACCCATCACCTTTTCTT
CGCAGAAATCAAGCGTCTTTGTTTTCTAACCTTTGTATCCGAGCTATCTGTATGCTGATGGTCGTATGTTTTTTGCCAGA
CCTTATTGATCTGGGCAGTAAAGCAGGTTTGATTTTGTATCCTTTCAGACCTTGAAAACTTGGCCC-TGTTCGTACCTTA
GCCCCGATG---------------GGTTTTCATGTTCTGCCAGCCCATTTAGTAATGCCCC-TTCGGTGGAGAAGCATGT
GCTGCATCGCTGGAAACAAAACCGCGGAACCTGAA---------------------------------------------
-----------GC-------------------------------ATTAGCAGATGAGGAGTTTACACTCATGGTGGTCGG
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3A_36
-----------------------------------ATTGACAACCTCGCCAAGCCTCAAGAGAACACAAC-CACATTCAA
GCCTTTGTTGAGGTGTAGCAGAAGAGTGAAGACATGGCCTCACATCATCAGTCGAAAGAAGGATCTCATTGAGCATCACT
GGCAGCTAGGCAGGAGATAGTGTGTCTAAATTGATTTTAAAACTTGTTTATTTTTACTTGAACAATTGGTTTGGTCGCAT
TATTTGTTACATTTGGATTATTCATTGTATTTAGAGATGGTTTGTAATAATAATTGTTCGAATATGCTCATTATTTATTT
TTAAATTATTATAAATAGGATAGAAAGAACGTATGACCAATGATAGACGAGTCCTGCTCATAGGAAA--AATACGAAGGC
CATATTTATGACGACTCTGTATTTGCGCACAACCTTCACAATGATTAGAATATTATAGAGCACATTACATATAAATGTTG
TTGTACTAAACCAGCGACAATTAATATGTATATGG---AGTAGAGTTTTCTAATGTTTTTTTTATCACATAGAGAGATAA
AAAAAACAACAACTAGAGGCAGTCCTTCTCTAGTCTAG-------------------TCTCTAGA---------------
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-----------------AAAAGACAAAAGTG--------------GACTTATCCAGTGACTTCGGTCCGATCATGATCCA
TCATCACCCAGCTACCAAAATGAGGCCTAGCAAGCCCAGTCGCCAGGCCCATGTGTTTGGCAGGAGGAGGGGAGACCTCG
CCTCGCGCACAGGCGAGCACATATAAAAGGGCGTCCGCCGATCTAGGG-TTTCTTCTGGGACGCAGGCGGCGGCTTAGGG
TTTTAACTCGCATCCATTCTCAAGGTAAGCGCCG------------------------CCTCCTCCACGAACCTCGATTC
AGACCGCCCTTCACCTCACACGGGCTCCTGTTTGATTATTCCGGTTTGTTCTTGTGCCATCGCGTCCGTCTCAGGTTAGC
AGGAGGCGGGCCATGGCGCCGTCGCAGCCCAAGTCAGGGCTCTTCGTGGGCATCAACAAGGGCCACGTCGTCACCAAGCG
CGAGCTGCCGCCACGCCCGTCCGACCGCAAGGGGGTAA---GCAGCCACCCACCTCCACTGTCCTAGTTTCTCC-CCCAC
GTTCTTTTTCTGCCATGTGGTCTCCTTGCGCAATTGATCTACCCATG----CATATTATCATGACTTGTG--CTTGTTGT
TTAGGC-----------------------------------------------TTATTCAATAATAAATTGTGTTCAGGC
TGGTGAGATGTCGACATTCAATTGCAGTGA------TTTGTGCTTGTTTGAATACTATCGTGGTGTACGTGTATCTTTGT
TGTAGTTATGATCCAGAAGGGG-TAGTGTTCTAAGTGTTACGAGCATTGTAGCATAGTTTGATTGATATTACTGAAGGTC
CCAGGTTGTCTGGTTAAATG--TGTGATGGGTATCTTGCAATTACATGAAAGCCC----TCAAAACTGAGGACTAGG---
----AAAATGTAC---ATATTGAGTTCAGCCTGCTGCCTGTAATTCTTG-------------------------------
---------GAACTCCCCAGTTGCTAGCCCTGCAGGC----------------TCAAATGTGCCAGCTTAATCAAGTAAT
--------------------------------------------------------------------------------
---------------TTATAATTCTGCGTTAA------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------T----------------------------------
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-------------------------TTTATTT-TCCTATTGTTGC-----------------------------------
------------------------TCATGTGTCGATCTGGCTGTTCTTTCTGACTTATGTTACTGATACAGACATGTT--
-----------------------------------GT--ATTTTCATGCCTTGCATATTATTTAATCAATTAGTACTATC
TTGTCATGAT-AAACTCAAAATAGAACTTGCTAGTTTTGAAG--------------------------------------
--------------------------------------------------------------------------------
--------CAAAACTGAGTTATTTGGCCATTGTAGTTGGCTATTTTAAACAA------AACTTGTGGGAAACTAATACAA
AGTGAACTTTGCATTTGTATGGTTCTCTGTGTTTTTTCAATAAC-TT-GTACATGTCTATTCAGTTTGTATTTTC-TTTA
CATTGTTAT-ATCTTGGACAATTTTTGCAGAAAGGTACCAAGAGGGTGCTGTTTGTCAGGAACTTGATTAGGGAGGTTGC
TGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGTGCACTCAAGGTCGCCAAGA
GGAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGGGAGGAGATGTCAAGTGTCCTCAGGAAGATGAGGTGTGTAACC
ACTAGTCTTATTATTGCAGTTTATATTATGGACACTATTTTACTATGTTATCCTATAGTTCA-TTTTCCTTTTTTGTTCT
AGATGACTTGGTTACAAAGATCACTAGTGCA----------------------------TAATTCGTCCTCTTACATCAT
GACTGATGAATTCCGTTGATCACTAGTTGCT------------------------TAAATGTCCCTTTTCAAGCCAGTGA
CTTTTCTATATTGCAAGTAGTGTAGGCTGTAGACAACAGCATCAACTTGGAAGATGTTGGTGTTATGGTGCTGTAGACAA
TGGAGCAACCTTGGTCATAATCATTGTTG-TTTATGTGCTTCTTTAATTGTTTCTTTTGCTTGACCAAAGTCCATTCATC
CTACCAATCAGGAAACATAA-TAGCTCCTGTAATTTCTTTTTCCCTATAACGATAATATATATGAACGAGCTCATTGTTC
TCTCCTGGTATGTAGGTCTGGTGGTGGTGGTGCCGCGGACAAGAAGAAATAGATTTTGCATGTTGGTGAAATTCTATTTA
TCTCAACGCTTTGCCCCGTATTTCCATATTATGCCAAGTTTGTAGCCTGTGGCAATTGGATACGAATGTAGCACATTGCA
CTTCAAGTTCAGAGTAAAACTATGAATTTTTGACACTATAT--TTGCAATTGGATTGACATGGTAGTACATTGCATTCTG
AGTTCAGAGTAAAACCGTGAGTTTTTGGCA--ATCTTTAGTGCGTGGTTTCTA-TTTGAGAACACCTATCACCTTTTCTT
CACAGAAATCAAACGTCTTTGTTTTCTTACTTTTGTATCTGAGCTATCTGTATGGCGATGGTTGTATGTTCTTC-CCAGA
CCTTATTGATCTGGGCAGTAAAGCAGGTTTGATTTTGTATCCTTTAGGACCTTGAG----------CTGTTTGTACCTAA
TGCCCCTTCGGTGGGGGAGTGTGCGGTTTTCATTGTCTACCAGCCCATTTAGTAATGGCCCCTTCGGCGGAGAAGTGTGC
GCAGCATCGCTGGAAACAAAATCACGGAACCTGAA---------------------------------------------
-----------GCTAAAAACTGGTTGTTTTTCAATGCATGATGCATCATCAGACGAGGAGTTTACACTCATGGTGGTCGG
CATGGGAGCTATCTGGTCAGCACGGAGGAAATCGATTCATGAGAATATATACCATAGTGGCATAGTCCGTTTGCAACGCA
TGGATTCGCATGGATTCGTCAAAGACGAAATTAATACTCTCTCCGGCCCTAGTGTCAAAAAAATGTCTTACATTATGGGA
TGGAGTAGTAGATGCGA---------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr5A_990
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-GGAGTCCGGCCATGGCGCCGTCGCAGCCCAAGTCAGGGCTCTTCGTGGGCATCAACAAGGGCCACGTCGTCACCAAGCG
CGAGCTGCCGCCTCGCCCGTCCGACCGCAAGGGGGTAATAAGCCGTCTCTAACCTCCGATATCCTCCTTCTCCTGCCCAT
ATGCGTCTTCTG--ATTTGTTCTCAGTGCCCGCTTGATCTGCCCATT----TAGATTGTACTGGCCTCGG--ACTGTTCT
CTAGATCTGTGTTTGCTCGGTAGTTCCGTTGTTTTAGTCTACTAGG----------------------------------
-----------------------------------------------TTTAGTATTATTTTCG----------TGTCTGT
TGTAGTTATGATCAAGAAAAGGGTGGTGAGCTTGATGTTAAGAACACTGTAGCATAGTATGGTTGATGCTACTAAAGGGT
AAAAGTAGTCGGGGTAAATATCTGTGAGGTGTACCTTGT-ATTGCATGGAAGCTC----GCCGAATTGAGAACTGAT---
----AAAAATTCTACAAGATTGAGAGCAGCCTTGTGTCTGCAGTGATGTAATGATGCATCAACACACCTTTGGCATTTTT
GATATTTAAGAAGTCCTAAGTTGCTAGTCCTGGAGGTCTATAGTTGTTGG---TGAAATGTGGCCGCTCAATCAAGTACC
--------------------------------------------------------------------------------
---------------TTGTATTTTCATTTCTAAAGTATCACTGACTGTGCTACACACCTTTTTGAGGGATATTGCAATAT
TC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATCTGTAAATAGTTGTTAATGCAGTTTTCAATGCCATCT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AGTATTAGTCTTAATTCTCATATTGTTC--------GATGCATAACCATGGCCTTGTGTAACTT
GGCAGCATTGATAGCCTCTTGTTTTCATGTGTAAATCTGGATTCTGTATTGGGCTTGA-TTACCTACACAGGCCTGTTGT
ATTTCTGCATTTAAGTAATAGCCAATGCAGATTCAGATCACCTTCCTTTCTTG-ATATTATTTACAACTGTTG-----TC
AAGTCGTGTTAAAAGTAAAATAGAACCTTGC-------------------------------------------------
----------------------------------TGAGTTTGGGACCAAATT----------------------------
-----------------GTTATTCGGCTATTCTAGTTGGCTTTTTTTTAAGGAATTGTAACTTGTGTGAAACTGAAACAA
AGTTAACTCTGCACTTACATGCTCCTATATGCTCAGCTGAATTATTA-TAGCATGTCTATCAGTTTGCAGTTATC-CTTA
CATTGTTAT-GTTCGCAT--A-TTTTGCAGAAAGGTACAAAGAGGGTGCATTTTGTCAGGAACTTGATCAGGGAGGTTGC
TGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGTGCACTCAAGGTCGCCAAGA
GAAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGTCAAGTGTCCTTAGGAAGATGAGGTGTGTAACA
ACTAGACTTAACATT------TATATTATGAACATTATTTGACTCTGCTGCCCTATTATTCAGTTTTCCTTTTTGTTCTG
G-----------------------------A-------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr5D_990
--------------------------------------------------------------------------------
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-GGAGTCCGGCCATGGCGCCGTCGCAGCCCAAGTCAGGGCTCTTCGTGGGCATCAACAAGGGCCACGTCGTCACCAAGCG
CGAGCTGCCGCCACGCCCGTCCGACCGCAAGGGGGTAA---GCCGTCTCTAACCTCCGATATCCTCCTTCTCCTGCCCAT
ATGCGTCTTCTG--CTATGATCTCAGTGCGGGATTGATCTGCCCATCTACTTAAATTGTGCCGACCTCTGCGACTGTTCT
CTAGATCTGTGTTTGCTCGGTAGTTCCGTTGTTGGACGCGTTATAGCTGACGCTTCTATCTCGTTCCCTAGTGTTCACAA
GGCTAAATTGTTCGTGTTTGTTTTATTTAGGTACGCTTTCTACTAGTTTTAGTATTGTGTTCG----------TGTTTGT
TGTTTTTATGATCAAAAAAGGG-TGGCGAGCTAGATGTTAA---CAGTATAGCACAGTATGGTTGATACTACTGAAGGGC
AAAAGTAGTCGGGTTAAATATCTGTGAGGTGTACCTTGT-CTTGCATGGAAGCTCGCTTGCCGAATTGAGACCAACCGAT
AAAAAATTTCTAC---ACATTGGGAGCAGCCTTGGGTCTGCAGTGATG--------CATGAACACACGTTTGGCAATTTT
GATATTTCAGAAGTCCCAAGTTGTTAGTCCTGGAGGTTGATAGTTGTTGGTGATGAAATGTGACCGCTCAATCAAGTACC
--------------------------------------------------------------------------------
---------------TTATAATTTCATTTCTAAAGTATCACTGACTGTACTACACATCTTTTTGAAGAATATTTCAATAT
TATCTGTAACAGTTTTGCTAAAGCTAAATTTGCCATAAGTATTGCACATCTAAGTCCTATGTCATTGATCTTACACCGAG
ATTCGTGTGGGTATATTCTTTTTCCTTTTTCTTTTTCTTTTTAATACTTGATTGAGTCTCTTAGATGTGCAATAACTAGG
GCACATCTGGATAGGCCCTAGACAGACCCTATCTGTAAATAGCTGTAAATGCAGTTTTAAATGATTTAGTATTAGGGGGT
GTTTGGTTACAGGGACTTATTGGTGTTGGGACTTAAAAAAGTCCCTTTAAGTCCCATCTAAACCAAACAGGAGGGACTTA
TAGGGACTTAAAGTGGGCATTTGGGACTTATGAAATAGTCTTATAGGGACTTATAGTTGTAATATGGTCTTTTAGTCCAT
GTTAAGTCCCAGGAACCAAACAGGTAGGGACTTTTTAGGAACTTGAGACTTATAAGTTGGGACTAAAAAAAGTCCTAGGA
CTTATGAACCAAACAGGGCCTTAGTCTTAATTCTCCTATTGTTCAATACTTCGATGCATAACCATGGCCTTGCATAACTT
GGGAGCATTGATAGCCTCTTGTTTTCATGTGTAAATCTGGATTCTGTATTGGGCTTGA-TTACCCACATGGGCCTGTTGT
ATT-CTGCAGTGAAGTAATAGCCATTGCAGAAGGAGT--ACCTTCCTTCCTTGCATATTATTTACTACTGTTG-----TC
AAGTCATGTTGAAAGTAAAATAGGACCTTGC-------------------------------------------------
----------------------------------TGTGTTTGGGACCAAATT----------------------------
-----------------GTTATTCGGCTATTCTAGCTGGCTTTTTTTTAGCGAATTGTAACTTGTATGAAACTGAAACAA
AGTTAACT-------TACATGCTCCTATATGCTCAGCTGAATTATTA-TAACATGTCTATCCAGTTTGCAGTTATTCTTA
CAATGTT---ATCTTGGCATA-TTTTGCAGAAAGGTACCAAGAGGGTGCATTTTGTCAGGAACTTGATTAGGGAGGTTGC
TGGATTCGCTCCCTATGAGAAACGTATCACTGAGCTTCTTAAGGTTGGAAAGGACAAGCGTGCACTCAAGGTCGCCAAGA
GAAAGCTTGGTACTCACAAGAGAGCAAAGAAGAAGAGAGAGGAGATGTCAAGTGTCCTTAGGAAGATGAGGTGTGTAACC
ACTCGACTCACCATT------TATATTATGAACATTATTTGACTCTGCTGTCCTATTATTCAGTTTTCCTTTTTGCTCTG
G-----------------------------A-------------------------------------------------
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>SNPs
----S------S--S------------------------------------S-----------S------S-----S---
--------------S---S-------------------------------------------------------------
S-----------S--------S-S-----------------SS-SS---------------------------S------
-----------------------------------------------------------S--------------------
---------------------------------------------------S----------S----SS-----------
-----------S---------------------S------------------------------S-----------S---
-------------------------------SS-SSSS------S----------S---S-SSSSS-----------S-S
S----------------SS----------S--S-S-SS-SS--SS-S-SSS-SSS-S-----------------------
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---------------------------------S------------------------------------------S---
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------------------------------------------------S-------------------------------
--------------------------------------------S-----------------------------------
---S----------------S----------------------------------------------S------------
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---------------------------S--------------------------S-------------------------
----S---------------------------------------------------------------------------
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-----------------------------S--------------------------------------------------
----------------------------S---------------------------------------------------
----S------------S---------S----------------------------------------------------
-----S--------------------------------------------------------------------------
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-----S---------S-SSS-SSSSSSSS--SSS--S-------------------------------------------
-----------------S--------------------------------------------------------------
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-------------------S------------------------------------------------------------
--------------------------------S---------------S-------------------------------
------------------------------------------------------------------------------S-
---------------------------------S-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------SS-------
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---S----------------------------------------------------------------------------
---------------------------------------------------------S----------------------
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-------------------------------SS-----------S-----S----------S-----------------S
--------------------------------------------------------------S-----------------
-----------------------------S----------------S------------------------------S--
---------------------------------------------------------S----------------------
-S------------------------------------------------------------------------------
---------S-----------------------------S-----S----S--SSS---SS-S-----------------
------------------------------S----------SS------S------S-----------------------
------------------------------------------S----------S--------------------------
-------------------------S-------SS---------------------------------------------
---------------------------------------------------------------S----------S-S---
---------------------------------------S----------------------------------------
--S---------------------SSSSS--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------S-----------------------------
-----S--------------------S----S-S-------------------------------------------S--
-------SS-SSSSS-SSS-S-SSSS-SS----------S----------------------SS-S-----------S--
S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1828
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------------------------------------------------TTCTTGTTCCATTGCGCCCT------------
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>reverse_4192
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-------------------------------TCGGTGGCTTCCAACAATGT-----------------------------
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>forward_3818
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--------------------------------------CAAGAGGGTGCTGTTTGTCC----------------------
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>reverse_5407
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----------------------------------------------AATAAAGTGTGCGCAGCAGC--------------
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-------------------------------------------------------------------------
