Multiple sequence alignment - TraesCS3D01G349300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G349300 chr3D 100.000 2627 0 0 1 2627 460501917 460499291 0.000000e+00 4852
1 TraesCS3D01G349300 chr3B 94.978 1792 69 11 841 2627 610753039 610751264 0.000000e+00 2791
2 TraesCS3D01G349300 chr3B 85.145 653 40 21 150 753 610753754 610753110 1.340000e-172 616
3 TraesCS3D01G349300 chr3A 93.888 1767 91 5 877 2627 602921339 602919574 0.000000e+00 2649
4 TraesCS3D01G349300 chr3A 84.099 283 30 8 150 421 602921663 602921385 2.590000e-65 259
5 TraesCS3D01G349300 chr1D 94.268 157 9 0 2 158 469382781 469382937 9.400000e-60 241
6 TraesCS3D01G349300 chr1D 93.960 149 9 0 2 150 426585440 426585292 2.630000e-55 226
7 TraesCS3D01G349300 chr1D 93.919 148 9 0 2 149 307825460 307825313 9.460000e-55 224
8 TraesCS3D01G349300 chr7D 95.333 150 7 0 1 150 630792380 630792231 3.380000e-59 239
9 TraesCS3D01G349300 chr7D 94.040 151 8 1 1 151 26719112 26719261 7.310000e-56 228
10 TraesCS3D01G349300 chr2D 94.079 152 8 1 1 152 486304609 486304759 2.030000e-56 230
11 TraesCS3D01G349300 chr2D 91.139 158 13 1 1 158 559833881 559834037 2.050000e-51 213
12 TraesCS3D01G349300 chr5D 93.919 148 8 1 1 148 14641889 14642035 3.400000e-54 222
13 TraesCS3D01G349300 chr6D 93.333 150 9 1 1 150 460306686 460306834 1.220000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G349300 chr3D 460499291 460501917 2626 True 4852.0 4852 100.0000 1 2627 1 chr3D.!!$R1 2626
1 TraesCS3D01G349300 chr3B 610751264 610753754 2490 True 1703.5 2791 90.0615 150 2627 2 chr3B.!!$R1 2477
2 TraesCS3D01G349300 chr3A 602919574 602921663 2089 True 1454.0 2649 88.9935 150 2627 2 chr3A.!!$R1 2477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.036294 GGTCCTCTTAGGCACCACAC 60.036 60.0 8.72 0.0 36.33 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1801 0.249155 TCGTTCCTTCGGTGTGTGTC 60.249 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.811799 AAAAACAGGCGTGTGGGC 59.188 55.556 13.63 0.00 36.84 5.36
48 49 4.827481 CGTGTGGGCGCTAGTTAT 57.173 55.556 7.64 0.00 0.00 1.89
49 50 3.059603 CGTGTGGGCGCTAGTTATT 57.940 52.632 7.64 0.00 0.00 1.40
50 51 1.365699 CGTGTGGGCGCTAGTTATTT 58.634 50.000 7.64 0.00 0.00 1.40
51 52 1.735571 CGTGTGGGCGCTAGTTATTTT 59.264 47.619 7.64 0.00 0.00 1.82
52 53 2.475519 CGTGTGGGCGCTAGTTATTTTG 60.476 50.000 7.64 0.00 0.00 2.44
53 54 1.470890 TGTGGGCGCTAGTTATTTTGC 59.529 47.619 7.64 0.00 0.00 3.68
54 55 1.099689 TGGGCGCTAGTTATTTTGCC 58.900 50.000 7.64 0.00 41.72 4.52
55 56 3.938653 GGCGCTAGTTATTTTGCCC 57.061 52.632 7.64 0.00 36.51 5.36
56 57 1.099689 GGCGCTAGTTATTTTGCCCA 58.900 50.000 7.64 0.00 36.51 5.36
57 58 1.202256 GGCGCTAGTTATTTTGCCCAC 60.202 52.381 7.64 0.00 36.51 4.61
58 59 1.470890 GCGCTAGTTATTTTGCCCACA 59.529 47.619 0.00 0.00 0.00 4.17
59 60 2.731027 GCGCTAGTTATTTTGCCCACAC 60.731 50.000 0.00 0.00 0.00 3.82
60 61 2.486203 CGCTAGTTATTTTGCCCACACA 59.514 45.455 0.00 0.00 0.00 3.72
61 62 3.669557 CGCTAGTTATTTTGCCCACACAC 60.670 47.826 0.00 0.00 0.00 3.82
62 63 3.254657 GCTAGTTATTTTGCCCACACACA 59.745 43.478 0.00 0.00 0.00 3.72
63 64 4.615912 GCTAGTTATTTTGCCCACACACAG 60.616 45.833 0.00 0.00 0.00 3.66
64 65 2.627699 AGTTATTTTGCCCACACACAGG 59.372 45.455 0.00 0.00 0.00 4.00
82 83 3.314331 CGTGTGGGCTGGTCCTCT 61.314 66.667 0.00 0.00 34.39 3.69
83 84 2.883828 CGTGTGGGCTGGTCCTCTT 61.884 63.158 0.00 0.00 34.39 2.85
84 85 1.541310 CGTGTGGGCTGGTCCTCTTA 61.541 60.000 0.00 0.00 34.39 2.10
85 86 0.250513 GTGTGGGCTGGTCCTCTTAG 59.749 60.000 0.00 0.00 34.39 2.18
86 87 0.909610 TGTGGGCTGGTCCTCTTAGG 60.910 60.000 0.00 0.00 36.46 2.69
87 88 1.995626 TGGGCTGGTCCTCTTAGGC 60.996 63.158 0.00 0.00 34.61 3.93
88 89 1.995626 GGGCTGGTCCTCTTAGGCA 60.996 63.158 0.00 0.00 38.60 4.75
89 90 1.222113 GGCTGGTCCTCTTAGGCAC 59.778 63.158 0.00 0.00 34.61 5.01
90 91 1.222113 GCTGGTCCTCTTAGGCACC 59.778 63.158 7.32 7.32 36.63 5.01
91 92 1.553690 GCTGGTCCTCTTAGGCACCA 61.554 60.000 13.28 13.28 40.68 4.17
92 93 0.250513 CTGGTCCTCTTAGGCACCAC 59.749 60.000 11.10 0.00 39.21 4.16
93 94 0.472925 TGGTCCTCTTAGGCACCACA 60.473 55.000 11.10 0.00 39.21 4.17
94 95 0.036294 GGTCCTCTTAGGCACCACAC 60.036 60.000 8.72 0.00 36.33 3.82
95 96 0.685097 GTCCTCTTAGGCACCACACA 59.315 55.000 0.00 0.00 34.61 3.72
96 97 0.976641 TCCTCTTAGGCACCACACAG 59.023 55.000 0.00 0.00 34.61 3.66
97 98 0.976641 CCTCTTAGGCACCACACAGA 59.023 55.000 0.00 0.00 0.00 3.41
98 99 1.347707 CCTCTTAGGCACCACACAGAA 59.652 52.381 0.00 0.00 0.00 3.02
99 100 2.026822 CCTCTTAGGCACCACACAGAAT 60.027 50.000 0.00 0.00 0.00 2.40
100 101 3.005554 CTCTTAGGCACCACACAGAATG 58.994 50.000 0.00 0.00 46.00 2.67
113 114 2.403252 CAGAATGTGTGGGTAGGTCC 57.597 55.000 0.00 0.00 0.00 4.46
124 125 1.188863 GGTAGGTCCCTTAACGCTCA 58.811 55.000 0.00 0.00 0.00 4.26
125 126 1.134877 GGTAGGTCCCTTAACGCTCAC 60.135 57.143 0.00 0.00 0.00 3.51
126 127 1.547372 GTAGGTCCCTTAACGCTCACA 59.453 52.381 0.00 0.00 0.00 3.58
127 128 0.320697 AGGTCCCTTAACGCTCACAC 59.679 55.000 0.00 0.00 0.00 3.82
128 129 1.012486 GGTCCCTTAACGCTCACACG 61.012 60.000 0.00 0.00 39.50 4.49
135 136 2.725641 ACGCTCACACGTGTAGCA 59.274 55.556 31.03 17.43 46.28 3.49
136 137 1.371758 ACGCTCACACGTGTAGCAG 60.372 57.895 31.03 26.75 46.28 4.24
137 138 1.371758 CGCTCACACGTGTAGCAGT 60.372 57.895 31.03 9.03 35.19 4.40
138 139 0.939577 CGCTCACACGTGTAGCAGTT 60.940 55.000 31.03 8.41 35.19 3.16
139 140 1.664874 CGCTCACACGTGTAGCAGTTA 60.665 52.381 31.03 12.13 35.19 2.24
140 141 2.607187 GCTCACACGTGTAGCAGTTAT 58.393 47.619 29.15 4.84 35.40 1.89
141 142 2.599082 GCTCACACGTGTAGCAGTTATC 59.401 50.000 29.15 10.90 35.40 1.75
142 143 2.846550 CTCACACGTGTAGCAGTTATCG 59.153 50.000 22.90 4.86 0.00 2.92
143 144 1.917955 CACACGTGTAGCAGTTATCGG 59.082 52.381 22.90 0.00 0.00 4.18
144 145 0.921347 CACGTGTAGCAGTTATCGGC 59.079 55.000 7.58 0.00 35.11 5.54
145 146 0.524816 ACGTGTAGCAGTTATCGGCG 60.525 55.000 0.00 0.00 39.59 6.46
146 147 0.524816 CGTGTAGCAGTTATCGGCGT 60.525 55.000 6.85 0.00 39.59 5.68
147 148 1.197910 GTGTAGCAGTTATCGGCGTC 58.802 55.000 6.85 0.00 39.59 5.19
148 149 0.101759 TGTAGCAGTTATCGGCGTCC 59.898 55.000 6.85 0.00 39.59 4.79
225 228 3.370527 GGTAGATAAGCCTTGTTGGAGCA 60.371 47.826 0.00 0.00 38.35 4.26
245 248 2.547211 CAGCCAGAAATGCTCTAATCCG 59.453 50.000 0.00 0.00 36.81 4.18
348 372 3.955650 TTCTAGTTCTTCCACGAAGGG 57.044 47.619 1.76 0.00 39.82 3.95
369 417 8.964533 AAGGGATCACTATTGATACTACATCT 57.035 34.615 0.00 0.00 42.95 2.90
394 442 0.798776 CACAGATCGTCAAAGTGGGC 59.201 55.000 0.00 0.00 0.00 5.36
395 443 0.396435 ACAGATCGTCAAAGTGGGCA 59.604 50.000 0.00 0.00 0.00 5.36
401 449 0.817634 CGTCAAAGTGGGCAACAGGA 60.818 55.000 0.00 0.00 39.74 3.86
405 453 2.642311 TCAAAGTGGGCAACAGGATCTA 59.358 45.455 0.00 0.00 39.74 1.98
426 474 6.114767 TCTAGTCATGAATTAGCATGTGCAA 58.885 36.000 0.00 0.56 44.59 4.08
428 476 4.703575 AGTCATGAATTAGCATGTGCAACT 59.296 37.500 7.83 1.83 44.59 3.16
430 478 6.544931 AGTCATGAATTAGCATGTGCAACTAT 59.455 34.615 7.83 0.00 44.59 2.12
435 483 6.823182 TGAATTAGCATGTGCAACTATGTACT 59.177 34.615 7.83 0.00 42.06 2.73
436 484 6.851222 ATTAGCATGTGCAACTATGTACTC 57.149 37.500 7.83 0.00 42.06 2.59
437 485 3.535561 AGCATGTGCAACTATGTACTCC 58.464 45.455 7.83 0.00 42.06 3.85
439 487 3.879295 GCATGTGCAACTATGTACTCCAT 59.121 43.478 0.00 0.00 42.06 3.41
440 488 4.260907 GCATGTGCAACTATGTACTCCATG 60.261 45.833 0.00 0.00 42.06 3.66
441 489 4.817318 TGTGCAACTATGTACTCCATGA 57.183 40.909 0.00 0.00 42.06 3.07
442 490 5.357742 TGTGCAACTATGTACTCCATGAT 57.642 39.130 0.00 0.00 42.06 2.45
443 491 6.478512 TGTGCAACTATGTACTCCATGATA 57.521 37.500 0.00 0.00 42.06 2.15
444 492 6.280643 TGTGCAACTATGTACTCCATGATAC 58.719 40.000 0.00 0.00 42.06 2.24
553 602 1.537202 GAGTGCAGCAACTCGGAAAAT 59.463 47.619 0.00 0.00 37.44 1.82
563 612 2.375146 ACTCGGAAAATAATGCCCCAC 58.625 47.619 0.00 0.00 0.00 4.61
638 687 0.965866 AGTCGAATGACCTGAGCCGA 60.966 55.000 0.00 0.00 46.74 5.54
671 720 0.592637 TTGGAGACATTGTTGCGCAG 59.407 50.000 11.31 0.00 42.32 5.18
689 738 3.343617 GCAGCAGGTGTAATTTAGGTGA 58.656 45.455 0.66 0.00 0.00 4.02
694 743 7.472543 CAGCAGGTGTAATTTAGGTGATTTAC 58.527 38.462 0.00 0.00 0.00 2.01
707 756 3.612423 GGTGATTTACCTTTTTCATGCGC 59.388 43.478 0.00 0.00 46.51 6.09
746 796 3.936564 ACTTCTTCAAGATCAGCCTGAC 58.063 45.455 0.00 0.00 33.34 3.51
750 800 3.773667 TCTTCAAGATCAGCCTGACAGAT 59.226 43.478 3.32 0.00 0.00 2.90
753 803 1.498264 AGATCAGCCTGACAGATGCT 58.502 50.000 3.32 1.86 35.25 3.79
754 804 1.413445 AGATCAGCCTGACAGATGCTC 59.587 52.381 3.32 3.95 31.77 4.26
755 805 1.138464 GATCAGCCTGACAGATGCTCA 59.862 52.381 3.32 0.00 31.77 4.26
757 807 0.535797 CAGCCTGACAGATGCTCAGA 59.464 55.000 3.32 0.00 37.90 3.27
758 808 1.066358 CAGCCTGACAGATGCTCAGAA 60.066 52.381 3.32 0.00 37.90 3.02
760 810 3.036819 AGCCTGACAGATGCTCAGAATA 58.963 45.455 3.32 0.00 37.90 1.75
761 811 3.069872 AGCCTGACAGATGCTCAGAATAG 59.930 47.826 3.32 0.00 37.90 1.73
765 837 4.439968 TGACAGATGCTCAGAATAGCTTG 58.560 43.478 0.00 0.00 43.19 4.01
772 844 7.388224 CAGATGCTCAGAATAGCTTGTATGAAT 59.612 37.037 0.00 0.00 43.19 2.57
788 860 7.855784 TGTATGAATAAGATCAGGCTAGGAA 57.144 36.000 0.00 0.00 31.76 3.36
789 861 7.901029 TGTATGAATAAGATCAGGCTAGGAAG 58.099 38.462 0.00 0.00 31.76 3.46
790 862 7.730332 TGTATGAATAAGATCAGGCTAGGAAGA 59.270 37.037 0.00 0.00 31.76 2.87
798 870 7.954666 AGATCAGGCTAGGAAGATATTACTC 57.045 40.000 0.00 0.00 0.00 2.59
799 871 6.895204 AGATCAGGCTAGGAAGATATTACTCC 59.105 42.308 0.00 0.00 0.00 3.85
800 872 5.334421 TCAGGCTAGGAAGATATTACTCCC 58.666 45.833 0.00 0.00 0.00 4.30
801 873 5.076598 TCAGGCTAGGAAGATATTACTCCCT 59.923 44.000 0.00 0.00 0.00 4.20
802 874 5.420739 CAGGCTAGGAAGATATTACTCCCTC 59.579 48.000 2.29 0.00 0.00 4.30
803 875 5.317533 AGGCTAGGAAGATATTACTCCCTCT 59.682 44.000 0.00 0.00 0.00 3.69
804 876 5.655090 GGCTAGGAAGATATTACTCCCTCTC 59.345 48.000 0.00 0.00 0.00 3.20
805 877 6.249951 GCTAGGAAGATATTACTCCCTCTCA 58.750 44.000 0.00 0.00 0.00 3.27
806 878 6.895204 GCTAGGAAGATATTACTCCCTCTCAT 59.105 42.308 0.00 0.00 0.00 2.90
807 879 7.068226 GCTAGGAAGATATTACTCCCTCTCATC 59.932 44.444 0.00 0.00 0.00 2.92
808 880 7.114849 AGGAAGATATTACTCCCTCTCATCT 57.885 40.000 0.00 0.00 0.00 2.90
809 881 6.953520 AGGAAGATATTACTCCCTCTCATCTG 59.046 42.308 0.00 0.00 0.00 2.90
810 882 6.951198 GGAAGATATTACTCCCTCTCATCTGA 59.049 42.308 0.00 0.00 0.00 3.27
811 883 7.619302 GGAAGATATTACTCCCTCTCATCTGAT 59.381 40.741 0.00 0.00 0.00 2.90
812 884 8.593945 AAGATATTACTCCCTCTCATCTGATC 57.406 38.462 0.00 0.00 0.00 2.92
813 885 7.125391 AGATATTACTCCCTCTCATCTGATCC 58.875 42.308 0.00 0.00 0.00 3.36
814 886 4.542906 TTACTCCCTCTCATCTGATCCA 57.457 45.455 0.00 0.00 0.00 3.41
815 887 3.634218 ACTCCCTCTCATCTGATCCAT 57.366 47.619 0.00 0.00 0.00 3.41
816 888 4.756203 ACTCCCTCTCATCTGATCCATA 57.244 45.455 0.00 0.00 0.00 2.74
817 889 5.288205 ACTCCCTCTCATCTGATCCATAT 57.712 43.478 0.00 0.00 0.00 1.78
818 890 5.663631 ACTCCCTCTCATCTGATCCATATT 58.336 41.667 0.00 0.00 0.00 1.28
819 891 6.809428 ACTCCCTCTCATCTGATCCATATTA 58.191 40.000 0.00 0.00 0.00 0.98
820 892 6.667414 ACTCCCTCTCATCTGATCCATATTAC 59.333 42.308 0.00 0.00 0.00 1.89
821 893 6.809428 TCCCTCTCATCTGATCCATATTACT 58.191 40.000 0.00 0.00 0.00 2.24
822 894 7.251936 TCCCTCTCATCTGATCCATATTACTT 58.748 38.462 0.00 0.00 0.00 2.24
823 895 7.179872 TCCCTCTCATCTGATCCATATTACTTG 59.820 40.741 0.00 0.00 0.00 3.16
824 896 7.038445 CCCTCTCATCTGATCCATATTACTTGT 60.038 40.741 0.00 0.00 0.00 3.16
825 897 8.034215 CCTCTCATCTGATCCATATTACTTGTC 58.966 40.741 0.00 0.00 0.00 3.18
826 898 7.901029 TCTCATCTGATCCATATTACTTGTCC 58.099 38.462 0.00 0.00 0.00 4.02
827 899 7.009179 TCATCTGATCCATATTACTTGTCCC 57.991 40.000 0.00 0.00 0.00 4.46
828 900 6.789457 TCATCTGATCCATATTACTTGTCCCT 59.211 38.462 0.00 0.00 0.00 4.20
829 901 7.293299 TCATCTGATCCATATTACTTGTCCCTT 59.707 37.037 0.00 0.00 0.00 3.95
830 902 8.597167 CATCTGATCCATATTACTTGTCCCTTA 58.403 37.037 0.00 0.00 0.00 2.69
831 903 8.561536 TCTGATCCATATTACTTGTCCCTTAA 57.438 34.615 0.00 0.00 0.00 1.85
832 904 8.998814 TCTGATCCATATTACTTGTCCCTTAAA 58.001 33.333 0.00 0.00 0.00 1.52
833 905 8.974060 TGATCCATATTACTTGTCCCTTAAAC 57.026 34.615 0.00 0.00 0.00 2.01
834 906 7.713507 TGATCCATATTACTTGTCCCTTAAACG 59.286 37.037 0.00 0.00 0.00 3.60
835 907 6.350906 TCCATATTACTTGTCCCTTAAACGG 58.649 40.000 0.00 0.00 0.00 4.44
836 908 6.156602 TCCATATTACTTGTCCCTTAAACGGA 59.843 38.462 0.00 0.00 0.00 4.69
837 909 6.482308 CCATATTACTTGTCCCTTAAACGGAG 59.518 42.308 0.00 0.00 0.00 4.63
838 910 5.750352 ATTACTTGTCCCTTAAACGGAGA 57.250 39.130 0.00 0.00 0.00 3.71
839 911 3.397849 ACTTGTCCCTTAAACGGAGAC 57.602 47.619 0.00 0.00 0.00 3.36
871 943 3.114616 CGGAGTTGCTGGCTGTCG 61.115 66.667 0.00 0.00 0.00 4.35
872 944 2.031163 GGAGTTGCTGGCTGTCGT 59.969 61.111 0.00 0.00 0.00 4.34
875 947 0.880278 GAGTTGCTGGCTGTCGTGAA 60.880 55.000 0.00 0.00 0.00 3.18
886 958 2.494059 CTGTCGTGAACCAAATGGAGT 58.506 47.619 6.42 0.00 38.94 3.85
889 961 2.875933 GTCGTGAACCAAATGGAGTTGA 59.124 45.455 6.42 0.00 38.94 3.18
893 965 2.562298 TGAACCAAATGGAGTTGATGGC 59.438 45.455 6.42 0.00 38.94 4.40
897 969 1.098050 AAATGGAGTTGATGGCTCGC 58.902 50.000 0.00 0.00 34.00 5.03
910 982 2.866028 CTCGCTGCAGAGCCAAAC 59.134 61.111 20.43 0.00 42.91 2.93
918 990 2.359230 AGAGCCAAACGGAGCAGC 60.359 61.111 0.00 0.00 0.00 5.25
926 998 1.518903 AAACGGAGCAGCTTGGCTTC 61.519 55.000 0.00 0.00 45.99 3.86
927 999 3.130160 CGGAGCAGCTTGGCTTCC 61.130 66.667 0.00 2.93 45.99 3.46
1029 1101 1.779061 AAGGTCGTGCCCACATCCTT 61.779 55.000 14.20 14.20 38.37 3.36
1064 1136 2.656002 TGCTCTCACGCTCCTACTAAT 58.344 47.619 0.00 0.00 0.00 1.73
1163 1235 1.153823 CGCTCTACACCAACGGAGG 60.154 63.158 0.00 0.00 0.00 4.30
1167 1239 4.728102 TACACCAACGGAGGCGCG 62.728 66.667 0.00 0.00 0.00 6.86
1206 1278 1.489560 CCCCTTCCTCGAAACACCCT 61.490 60.000 0.00 0.00 0.00 4.34
1311 1383 1.154093 GACCGTCGTCGATGAGCAA 60.154 57.895 16.06 0.00 39.71 3.91
1467 1539 0.966920 TCAGGTTCTTCGGAGTCCAC 59.033 55.000 10.49 0.00 0.00 4.02
1487 1559 1.222936 GTGATGGCCAGGAGGAGTG 59.777 63.158 13.05 0.00 36.89 3.51
1690 1772 6.057533 TCTGCAAGAAGATTCAGAGTTTTCA 58.942 36.000 0.00 0.00 42.31 2.69
1719 1801 5.901884 GTGAAACTTGTACATTGACAGTTCG 59.098 40.000 9.68 0.00 0.00 3.95
2005 2087 7.955324 CGTTATACAAACACAGAATTGTACTGG 59.045 37.037 0.00 0.00 42.81 4.00
2028 2110 1.545428 GGATCCAGTTGGTGAAGCACA 60.545 52.381 6.95 0.00 35.86 4.57
2445 2532 2.176364 AGCCATCAATCCAGCAACCTAT 59.824 45.455 0.00 0.00 0.00 2.57
2446 2533 2.961062 GCCATCAATCCAGCAACCTATT 59.039 45.455 0.00 0.00 0.00 1.73
2524 2612 4.450419 GTCTGTATAGCCATTGATCTGCAC 59.550 45.833 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.066358 CCCTTCCGGTCCTTCTTACAC 60.066 57.143 0.00 0.00 0.00 2.90
2 3 1.565067 TCCCTTCCGGTCCTTCTTAC 58.435 55.000 0.00 0.00 0.00 2.34
3 4 2.330661 TTCCCTTCCGGTCCTTCTTA 57.669 50.000 0.00 0.00 0.00 2.10
4 5 1.441695 TTTCCCTTCCGGTCCTTCTT 58.558 50.000 0.00 0.00 0.00 2.52
5 6 1.441695 TTTTCCCTTCCGGTCCTTCT 58.558 50.000 0.00 0.00 0.00 2.85
6 7 2.281539 TTTTTCCCTTCCGGTCCTTC 57.718 50.000 0.00 0.00 0.00 3.46
22 23 2.811799 GCCCACACGCCTGTTTTT 59.188 55.556 0.00 0.00 0.00 1.94
23 24 3.591835 CGCCCACACGCCTGTTTT 61.592 61.111 0.00 0.00 0.00 2.43
31 32 1.365699 AAATAACTAGCGCCCACACG 58.634 50.000 2.29 0.00 0.00 4.49
32 33 2.731027 GCAAAATAACTAGCGCCCACAC 60.731 50.000 2.29 0.00 0.00 3.82
33 34 1.470890 GCAAAATAACTAGCGCCCACA 59.529 47.619 2.29 0.00 0.00 4.17
34 35 1.202256 GGCAAAATAACTAGCGCCCAC 60.202 52.381 2.29 0.00 33.31 4.61
35 36 1.099689 GGCAAAATAACTAGCGCCCA 58.900 50.000 2.29 0.00 33.31 5.36
36 37 3.938653 GGCAAAATAACTAGCGCCC 57.061 52.632 2.29 0.00 33.31 6.13
37 38 1.099689 TGGGCAAAATAACTAGCGCC 58.900 50.000 2.29 0.00 38.93 6.53
38 39 1.470890 TGTGGGCAAAATAACTAGCGC 59.529 47.619 0.00 0.00 39.95 5.92
39 40 2.486203 TGTGTGGGCAAAATAACTAGCG 59.514 45.455 0.00 0.00 0.00 4.26
40 41 3.254657 TGTGTGTGGGCAAAATAACTAGC 59.745 43.478 0.00 0.00 0.00 3.42
41 42 4.082787 CCTGTGTGTGGGCAAAATAACTAG 60.083 45.833 0.00 0.00 0.00 2.57
42 43 3.823873 CCTGTGTGTGGGCAAAATAACTA 59.176 43.478 0.00 0.00 0.00 2.24
43 44 2.627699 CCTGTGTGTGGGCAAAATAACT 59.372 45.455 0.00 0.00 0.00 2.24
44 45 2.866065 GCCTGTGTGTGGGCAAAATAAC 60.866 50.000 0.00 0.00 46.84 1.89
45 46 1.342819 GCCTGTGTGTGGGCAAAATAA 59.657 47.619 0.00 0.00 46.84 1.40
46 47 0.965439 GCCTGTGTGTGGGCAAAATA 59.035 50.000 0.00 0.00 46.84 1.40
47 48 1.747774 GCCTGTGTGTGGGCAAAAT 59.252 52.632 0.00 0.00 46.84 1.82
48 49 3.215245 GCCTGTGTGTGGGCAAAA 58.785 55.556 0.00 0.00 46.84 2.44
65 66 1.541310 TAAGAGGACCAGCCCACACG 61.541 60.000 0.00 0.00 37.37 4.49
66 67 0.250513 CTAAGAGGACCAGCCCACAC 59.749 60.000 0.00 0.00 37.37 3.82
67 68 0.909610 CCTAAGAGGACCAGCCCACA 60.910 60.000 0.00 0.00 37.67 4.17
68 69 1.908483 CCTAAGAGGACCAGCCCAC 59.092 63.158 0.00 0.00 37.67 4.61
69 70 1.995626 GCCTAAGAGGACCAGCCCA 60.996 63.158 0.00 0.00 37.67 5.36
70 71 1.995626 TGCCTAAGAGGACCAGCCC 60.996 63.158 0.00 0.00 37.67 5.19
71 72 1.222113 GTGCCTAAGAGGACCAGCC 59.778 63.158 0.00 0.00 37.67 4.85
72 73 1.222113 GGTGCCTAAGAGGACCAGC 59.778 63.158 0.00 0.00 37.67 4.85
73 74 0.250513 GTGGTGCCTAAGAGGACCAG 59.749 60.000 5.06 0.00 42.28 4.00
74 75 0.472925 TGTGGTGCCTAAGAGGACCA 60.473 55.000 0.31 0.31 40.68 4.02
75 76 0.036294 GTGTGGTGCCTAAGAGGACC 60.036 60.000 0.00 2.40 37.67 4.46
76 77 0.685097 TGTGTGGTGCCTAAGAGGAC 59.315 55.000 0.00 0.00 37.67 3.85
77 78 0.976641 CTGTGTGGTGCCTAAGAGGA 59.023 55.000 0.00 0.00 37.67 3.71
78 79 0.976641 TCTGTGTGGTGCCTAAGAGG 59.023 55.000 0.00 0.00 38.80 3.69
79 80 2.839486 TTCTGTGTGGTGCCTAAGAG 57.161 50.000 0.00 0.00 0.00 2.85
80 81 2.371841 ACATTCTGTGTGGTGCCTAAGA 59.628 45.455 0.00 0.00 40.28 2.10
81 82 2.783135 ACATTCTGTGTGGTGCCTAAG 58.217 47.619 0.00 0.00 40.28 2.18
82 83 2.949177 ACATTCTGTGTGGTGCCTAA 57.051 45.000 0.00 0.00 40.28 2.69
93 94 1.628846 GGACCTACCCACACATTCTGT 59.371 52.381 0.00 0.00 0.00 3.41
94 95 2.403252 GGACCTACCCACACATTCTG 57.597 55.000 0.00 0.00 0.00 3.02
105 106 1.134877 GTGAGCGTTAAGGGACCTACC 60.135 57.143 0.00 0.00 38.08 3.18
106 107 1.547372 TGTGAGCGTTAAGGGACCTAC 59.453 52.381 0.00 0.00 0.00 3.18
107 108 1.547372 GTGTGAGCGTTAAGGGACCTA 59.453 52.381 0.00 0.00 0.00 3.08
108 109 0.320697 GTGTGAGCGTTAAGGGACCT 59.679 55.000 0.00 0.00 0.00 3.85
109 110 1.012486 CGTGTGAGCGTTAAGGGACC 61.012 60.000 0.00 0.00 0.00 4.46
110 111 0.319297 ACGTGTGAGCGTTAAGGGAC 60.319 55.000 0.00 0.00 43.04 4.46
111 112 0.319211 CACGTGTGAGCGTTAAGGGA 60.319 55.000 7.58 0.00 43.83 4.20
112 113 0.599204 ACACGTGTGAGCGTTAAGGG 60.599 55.000 22.71 0.00 43.83 3.95
113 114 1.983605 CTACACGTGTGAGCGTTAAGG 59.016 52.381 30.83 4.46 43.83 2.69
114 115 1.385743 GCTACACGTGTGAGCGTTAAG 59.614 52.381 30.83 17.80 43.83 1.85
115 116 1.269154 TGCTACACGTGTGAGCGTTAA 60.269 47.619 30.83 15.16 43.83 2.01
116 117 0.311477 TGCTACACGTGTGAGCGTTA 59.689 50.000 30.83 15.47 43.83 3.18
117 118 0.939577 CTGCTACACGTGTGAGCGTT 60.940 55.000 30.83 4.50 43.83 4.84
118 119 1.371758 CTGCTACACGTGTGAGCGT 60.372 57.895 30.83 5.31 46.88 5.07
119 120 0.939577 AACTGCTACACGTGTGAGCG 60.940 55.000 30.83 25.59 36.91 5.03
120 121 2.060326 TAACTGCTACACGTGTGAGC 57.940 50.000 30.83 29.21 35.66 4.26
121 122 2.846550 CGATAACTGCTACACGTGTGAG 59.153 50.000 30.83 23.16 0.00 3.51
122 123 2.414957 CCGATAACTGCTACACGTGTGA 60.415 50.000 30.83 13.42 0.00 3.58
123 124 1.917955 CCGATAACTGCTACACGTGTG 59.082 52.381 30.83 20.31 0.00 3.82
124 125 1.734707 GCCGATAACTGCTACACGTGT 60.735 52.381 26.52 26.52 0.00 4.49
125 126 0.921347 GCCGATAACTGCTACACGTG 59.079 55.000 15.48 15.48 0.00 4.49
126 127 0.524816 CGCCGATAACTGCTACACGT 60.525 55.000 0.00 0.00 0.00 4.49
127 128 0.524816 ACGCCGATAACTGCTACACG 60.525 55.000 0.00 0.00 0.00 4.49
128 129 1.197910 GACGCCGATAACTGCTACAC 58.802 55.000 0.00 0.00 0.00 2.90
129 130 0.101759 GGACGCCGATAACTGCTACA 59.898 55.000 0.00 0.00 0.00 2.74
130 131 0.101759 TGGACGCCGATAACTGCTAC 59.898 55.000 0.00 0.00 0.00 3.58
131 132 1.037493 ATGGACGCCGATAACTGCTA 58.963 50.000 0.00 0.00 0.00 3.49
132 133 1.000163 CTATGGACGCCGATAACTGCT 60.000 52.381 0.00 0.00 0.00 4.24
133 134 1.000607 TCTATGGACGCCGATAACTGC 60.001 52.381 0.00 0.00 0.00 4.40
134 135 3.577649 ATCTATGGACGCCGATAACTG 57.422 47.619 0.00 0.00 0.00 3.16
135 136 4.602340 AAATCTATGGACGCCGATAACT 57.398 40.909 0.00 0.00 0.00 2.24
136 137 4.084013 CCAAAATCTATGGACGCCGATAAC 60.084 45.833 0.00 0.00 40.56 1.89
137 138 4.062293 CCAAAATCTATGGACGCCGATAA 58.938 43.478 0.00 0.00 40.56 1.75
138 139 3.556213 CCCAAAATCTATGGACGCCGATA 60.556 47.826 0.00 0.00 40.56 2.92
139 140 2.494059 CCAAAATCTATGGACGCCGAT 58.506 47.619 0.00 0.00 40.56 4.18
140 141 1.474320 CCCAAAATCTATGGACGCCGA 60.474 52.381 0.00 0.00 40.56 5.54
141 142 0.944386 CCCAAAATCTATGGACGCCG 59.056 55.000 0.00 0.00 40.56 6.46
142 143 1.318576 CCCCAAAATCTATGGACGCC 58.681 55.000 0.00 0.00 40.56 5.68
143 144 1.133915 TCCCCCAAAATCTATGGACGC 60.134 52.381 0.00 0.00 40.56 5.19
144 145 3.214328 CTTCCCCCAAAATCTATGGACG 58.786 50.000 0.00 0.00 40.56 4.79
145 146 3.566351 CCTTCCCCCAAAATCTATGGAC 58.434 50.000 0.00 0.00 40.56 4.02
146 147 2.517980 CCCTTCCCCCAAAATCTATGGA 59.482 50.000 0.00 0.00 40.56 3.41
147 148 2.426268 CCCCTTCCCCCAAAATCTATGG 60.426 54.545 0.00 0.00 37.71 2.74
148 149 2.247372 ACCCCTTCCCCCAAAATCTATG 59.753 50.000 0.00 0.00 0.00 2.23
205 206 3.682718 GCTGCTCCAACAAGGCTTATCTA 60.683 47.826 0.00 0.00 37.29 1.98
225 228 2.435805 TCGGATTAGAGCATTTCTGGCT 59.564 45.455 0.00 0.00 46.07 4.75
245 248 3.923461 GTCATGTGAGCTCAAGTACTGTC 59.077 47.826 20.19 3.67 0.00 3.51
369 417 4.556233 CACTTTGACGATCTGTGACCTTA 58.444 43.478 0.00 0.00 0.00 2.69
394 442 6.988580 TGCTAATTCATGACTAGATCCTGTTG 59.011 38.462 13.08 0.00 0.00 3.33
395 443 7.129457 TGCTAATTCATGACTAGATCCTGTT 57.871 36.000 13.08 0.00 0.00 3.16
401 449 6.293698 TGCACATGCTAATTCATGACTAGAT 58.706 36.000 12.68 0.00 44.94 1.98
405 453 4.703575 AGTTGCACATGCTAATTCATGACT 59.296 37.500 12.68 4.46 44.94 3.41
449 497 9.120538 ACTGTTTGTTGATTAGATTGTGTAAGT 57.879 29.630 0.00 0.00 0.00 2.24
507 555 5.841783 GGTCTTCCATTAGTCCCTAGAGAAT 59.158 44.000 0.00 0.00 0.00 2.40
563 612 0.456995 GACTTCTTCGGGAGAGTGCG 60.457 60.000 0.00 0.00 41.75 5.34
566 615 1.896465 CCAAGACTTCTTCGGGAGAGT 59.104 52.381 0.00 0.00 41.75 3.24
574 623 1.916697 GCAGGCGCCAAGACTTCTTC 61.917 60.000 31.54 1.89 34.57 2.87
607 656 1.617947 ATTCGACTGTCCTCCCCTGC 61.618 60.000 1.55 0.00 0.00 4.85
638 687 3.326006 TGTCTCCAAGAATTCTCTGCTGT 59.674 43.478 8.78 0.00 30.03 4.40
671 720 6.792326 GGTAAATCACCTAAATTACACCTGC 58.208 40.000 0.00 0.00 44.79 4.85
689 738 2.564947 TGGGCGCATGAAAAAGGTAAAT 59.435 40.909 10.83 0.00 0.00 1.40
694 743 2.097680 ATTTGGGCGCATGAAAAAGG 57.902 45.000 10.83 0.00 0.00 3.11
696 745 3.256879 TCTGTATTTGGGCGCATGAAAAA 59.743 39.130 10.83 2.03 0.00 1.94
702 751 1.472480 GTGTTCTGTATTTGGGCGCAT 59.528 47.619 10.83 0.00 0.00 4.73
704 753 0.170339 GGTGTTCTGTATTTGGGCGC 59.830 55.000 0.00 0.00 0.00 6.53
705 754 1.529226 TGGTGTTCTGTATTTGGGCG 58.471 50.000 0.00 0.00 0.00 6.13
706 755 2.890945 AGTTGGTGTTCTGTATTTGGGC 59.109 45.455 0.00 0.00 0.00 5.36
707 756 4.827284 AGAAGTTGGTGTTCTGTATTTGGG 59.173 41.667 0.00 0.00 32.86 4.12
746 796 6.221659 TCATACAAGCTATTCTGAGCATCTG 58.778 40.000 0.00 0.00 45.43 2.90
750 800 8.424133 TCTTATTCATACAAGCTATTCTGAGCA 58.576 33.333 0.00 0.00 45.43 4.26
755 805 9.941325 CCTGATCTTATTCATACAAGCTATTCT 57.059 33.333 0.00 0.00 0.00 2.40
757 807 8.381636 AGCCTGATCTTATTCATACAAGCTATT 58.618 33.333 0.00 0.00 0.00 1.73
758 808 7.915930 AGCCTGATCTTATTCATACAAGCTAT 58.084 34.615 0.00 0.00 0.00 2.97
760 810 6.185114 AGCCTGATCTTATTCATACAAGCT 57.815 37.500 0.00 0.00 0.00 3.74
761 811 6.593382 CCTAGCCTGATCTTATTCATACAAGC 59.407 42.308 0.00 0.00 0.00 4.01
765 837 8.128322 TCTTCCTAGCCTGATCTTATTCATAC 57.872 38.462 0.00 0.00 0.00 2.39
772 844 9.469097 GAGTAATATCTTCCTAGCCTGATCTTA 57.531 37.037 0.00 0.00 0.00 2.10
788 860 7.125391 GGATCAGATGAGAGGGAGTAATATCT 58.875 42.308 0.00 0.00 0.00 1.98
789 861 6.894654 TGGATCAGATGAGAGGGAGTAATATC 59.105 42.308 0.00 0.00 0.00 1.63
790 862 6.809428 TGGATCAGATGAGAGGGAGTAATAT 58.191 40.000 0.00 0.00 0.00 1.28
797 869 6.809428 AGTAATATGGATCAGATGAGAGGGA 58.191 40.000 0.00 0.00 0.00 4.20
798 870 7.038445 ACAAGTAATATGGATCAGATGAGAGGG 60.038 40.741 0.00 0.00 0.00 4.30
799 871 7.905265 ACAAGTAATATGGATCAGATGAGAGG 58.095 38.462 0.00 0.00 0.00 3.69
800 872 8.034215 GGACAAGTAATATGGATCAGATGAGAG 58.966 40.741 0.00 0.00 0.00 3.20
801 873 7.038729 GGGACAAGTAATATGGATCAGATGAGA 60.039 40.741 0.00 0.00 0.00 3.27
802 874 7.038445 AGGGACAAGTAATATGGATCAGATGAG 60.038 40.741 0.00 0.00 0.00 2.90
803 875 6.789457 AGGGACAAGTAATATGGATCAGATGA 59.211 38.462 0.00 0.00 0.00 2.92
804 876 7.013823 AGGGACAAGTAATATGGATCAGATG 57.986 40.000 0.00 0.00 0.00 2.90
805 877 7.639062 AAGGGACAAGTAATATGGATCAGAT 57.361 36.000 0.00 0.00 0.00 2.90
806 878 8.561536 TTAAGGGACAAGTAATATGGATCAGA 57.438 34.615 0.00 0.00 0.00 3.27
807 879 9.057089 GTTTAAGGGACAAGTAATATGGATCAG 57.943 37.037 0.00 0.00 0.00 2.90
808 880 7.713507 CGTTTAAGGGACAAGTAATATGGATCA 59.286 37.037 0.00 0.00 0.00 2.92
809 881 7.172703 CCGTTTAAGGGACAAGTAATATGGATC 59.827 40.741 0.00 0.00 0.00 3.36
810 882 6.996282 CCGTTTAAGGGACAAGTAATATGGAT 59.004 38.462 0.00 0.00 0.00 3.41
811 883 6.156602 TCCGTTTAAGGGACAAGTAATATGGA 59.843 38.462 1.88 0.00 0.00 3.41
812 884 6.350906 TCCGTTTAAGGGACAAGTAATATGG 58.649 40.000 1.88 0.00 0.00 2.74
813 885 7.224167 GTCTCCGTTTAAGGGACAAGTAATATG 59.776 40.741 1.88 0.00 34.08 1.78
814 886 7.270779 GTCTCCGTTTAAGGGACAAGTAATAT 58.729 38.462 1.88 0.00 34.08 1.28
815 887 6.625740 CGTCTCCGTTTAAGGGACAAGTAATA 60.626 42.308 1.88 0.00 33.76 0.98
816 888 5.485620 GTCTCCGTTTAAGGGACAAGTAAT 58.514 41.667 1.88 0.00 34.08 1.89
817 889 4.559300 CGTCTCCGTTTAAGGGACAAGTAA 60.559 45.833 1.88 0.00 33.76 2.24
818 890 3.057315 CGTCTCCGTTTAAGGGACAAGTA 60.057 47.826 1.88 0.00 33.76 2.24
819 891 2.288640 CGTCTCCGTTTAAGGGACAAGT 60.289 50.000 1.88 0.00 33.76 3.16
820 892 2.334838 CGTCTCCGTTTAAGGGACAAG 58.665 52.381 1.88 0.00 33.76 3.16
821 893 2.443887 CGTCTCCGTTTAAGGGACAA 57.556 50.000 1.88 0.00 33.76 3.18
833 905 4.440103 CCGTTCAATAAGAATACGTCTCCG 59.560 45.833 0.00 0.00 38.76 4.63
834 906 5.585390 TCCGTTCAATAAGAATACGTCTCC 58.415 41.667 0.00 0.00 38.76 3.71
835 907 6.264088 ACTCCGTTCAATAAGAATACGTCTC 58.736 40.000 0.00 0.00 38.76 3.36
836 908 6.205101 ACTCCGTTCAATAAGAATACGTCT 57.795 37.500 0.00 0.00 38.76 4.18
837 909 6.693342 CAACTCCGTTCAATAAGAATACGTC 58.307 40.000 0.00 0.00 38.76 4.34
838 910 5.063060 GCAACTCCGTTCAATAAGAATACGT 59.937 40.000 0.00 0.00 38.76 3.57
839 911 5.291128 AGCAACTCCGTTCAATAAGAATACG 59.709 40.000 0.00 0.00 38.76 3.06
840 912 6.456988 CCAGCAACTCCGTTCAATAAGAATAC 60.457 42.308 0.00 0.00 38.76 1.89
841 913 5.584649 CCAGCAACTCCGTTCAATAAGAATA 59.415 40.000 0.00 0.00 38.76 1.75
842 914 4.396166 CCAGCAACTCCGTTCAATAAGAAT 59.604 41.667 0.00 0.00 38.76 2.40
843 915 3.751175 CCAGCAACTCCGTTCAATAAGAA 59.249 43.478 0.00 0.00 0.00 2.52
849 921 1.148273 AGCCAGCAACTCCGTTCAA 59.852 52.632 0.00 0.00 0.00 2.69
854 926 3.114616 CGACAGCCAGCAACTCCG 61.115 66.667 0.00 0.00 0.00 4.63
869 941 3.201353 TCAACTCCATTTGGTTCACGA 57.799 42.857 0.00 0.00 36.34 4.35
871 943 3.614870 GCCATCAACTCCATTTGGTTCAC 60.615 47.826 0.00 0.00 36.34 3.18
872 944 2.562298 GCCATCAACTCCATTTGGTTCA 59.438 45.455 0.00 0.00 36.34 3.18
875 947 2.450476 GAGCCATCAACTCCATTTGGT 58.550 47.619 0.00 0.00 36.34 3.67
886 958 1.449070 CTCTGCAGCGAGCCATCAA 60.449 57.895 9.47 0.00 44.83 2.57
897 969 2.684843 GCTCCGTTTGGCTCTGCAG 61.685 63.158 7.63 7.63 34.14 4.41
910 982 3.130160 GGAAGCCAAGCTGCTCCG 61.130 66.667 1.00 0.00 41.80 4.63
918 990 1.882623 GAGTTGGTTCAGGAAGCCAAG 59.117 52.381 8.57 0.00 42.20 3.61
926 998 1.879796 GCAGAGTGGAGTTGGTTCAGG 60.880 57.143 0.00 0.00 0.00 3.86
927 999 1.517242 GCAGAGTGGAGTTGGTTCAG 58.483 55.000 0.00 0.00 0.00 3.02
1029 1101 2.124736 GCAATGCAGGCTCGGGTA 60.125 61.111 0.00 0.00 0.00 3.69
1305 1377 0.250684 TCTTGCCGTGGAATTGCTCA 60.251 50.000 0.00 0.00 0.00 4.26
1311 1383 1.270907 ACTCTCTCTTGCCGTGGAAT 58.729 50.000 0.00 0.00 0.00 3.01
1435 1507 0.833287 AACCTGATGCTATCCTGCGT 59.167 50.000 0.00 0.00 35.36 5.24
1438 1510 3.388308 CGAAGAACCTGATGCTATCCTG 58.612 50.000 0.00 0.00 0.00 3.86
1440 1512 2.365617 TCCGAAGAACCTGATGCTATCC 59.634 50.000 0.00 0.00 0.00 2.59
1443 1515 2.427453 GACTCCGAAGAACCTGATGCTA 59.573 50.000 0.00 0.00 0.00 3.49
1467 1539 3.083349 TCCTCCTGGCCATCACGG 61.083 66.667 5.51 3.56 38.11 4.94
1487 1559 3.179265 CGACCACCGCGACATGAC 61.179 66.667 8.23 0.00 0.00 3.06
1707 1789 2.032894 GGTGTGTGTCGAACTGTCAATG 60.033 50.000 0.00 0.00 0.00 2.82
1719 1801 0.249155 TCGTTCCTTCGGTGTGTGTC 60.249 55.000 0.00 0.00 0.00 3.67
1826 1908 5.221441 GCTATTGGGTTCAGTTTTGGACTTT 60.221 40.000 0.00 0.00 36.10 2.66
2005 2087 2.019984 GCTTCACCAACTGGATCCATC 58.980 52.381 16.63 0.00 38.94 3.51
2028 2110 4.520111 TGAATGCTGCGAATATAGGCAAAT 59.480 37.500 0.00 0.00 38.94 2.32
2445 2532 8.439172 TGTCATGATATTTCCATCCATGTCTAA 58.561 33.333 0.00 0.00 0.00 2.10
2446 2533 7.976712 TGTCATGATATTTCCATCCATGTCTA 58.023 34.615 0.00 0.00 0.00 2.59
2507 2595 3.851458 TGAGTGCAGATCAATGGCTAT 57.149 42.857 0.00 0.00 0.00 2.97
2524 2612 8.719648 CCTGCTTGCTTATCTTTATTAGATGAG 58.280 37.037 0.00 0.00 45.31 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.