>input_sequence_73615
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-------------------------------ATGCAACCACAAGGTCGTGCCCACATCCTTACCCGAGCCTGCATTGCTC
TCACGCTCCTACTAATCACGGTAAACACCGCGTCGGGCCGCCGCCCGGCAGGCCACAGCCCCCCGCCCACTCCCCACGGC
TCCGGCCAGACCATAACGCTCTACACCAACGGAGGCGCGCCACCAAATGCCGGCGGCACCCCTTCCTCGAAACACCCTGC
CTTCACCAGCCAAGGCCCGATCGGCCACCCCGGCAGCTGGCTGCGCGCCTTGACGCGGCCTGGGGCGCTCCGCCCCGGCA
CGGTGACCGTCGTCGATGAGCAATTCCACGGCAAGAGAGAGTTTGGGCTGCCCTTGGCTGGGAAGCTGCAGGGCGTTCTT
GTCACCAGCTTGGATGATAACAGCAGCCGTATGGTGGCAGTGAAGGCCCTGTTCACCGGCGCTGGCACGCAGGATAGCAT
CAGGTTCTTCGGAGTCCACCGTGATGGCCAGGAGGAGTGTCATGTCGCGGTGGTCGGAGGGACGGGAAGGTACGACGGCA
CCACCGGTTTCGCTGTTATCAGAGCAGCGGATGTACCTGAAACAAGCGGAAATGTCAGCTTCAGCAGGATTCTTAGTTTC
AGTGTGCACCTCAAGTGA--------------------------------------------------------------
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>chr3D_1_TraesCS3D01G349300
GTGTAAGAAGGACCGGAAGGGAAAAAACAGGCGTGTGGGCGCTAGTTATTTTGCCCACACACAGGCGTGTGGGCTGGTCC
TCTTAGGCACCACACAGAATGTGTGGGTAGGTCCCTTAACGCTCACACGTGTAGCAGTTATCGGCGTCCATAGATTTTGG
GGGAAGGGGTAGAAGTAGCTTAACTCCTCAAACTGATTTTTTAGGTAG--ATAAGCCTTGTTGGAGCAGCCAGAAATGCT
CTAATCCGACAGTA---------------------CTTGAGCTCACATGACCAACAACCTGAAGAGGTTGTCACGTTGAT
TTCATCTTAACCTGAGGAATGATCCAGGAAATTCTAGTTCTTCCACGAAGGGATCAC-----------------------
TAT-TGATACTACATCTAAGGTCACAGATCGTCAAAGTGGGCAACAGGATCTAGTCATGAATTAGCATGTGCAACTATGT
ACTCCATGATACTAATACTTACACAATCTAATCAACAAACAGTAATGTGAAAAGTAAAAGACCAGAATCAAATTATTCTC
TAGGGACTAATGGAAGACCAGAGTGCAGCAACT-CGGAAAATAATGCCCCACGCACTCTCCCGAAGAAGTCTTGGCGCCT
GCTTACCAAGTCGTGGCAGGGGAGGACAGTCGAATGACCTGAGCCGACAGCAGAGAATTCTTGGAGACATTGTTGCGCAG
CAGGTGTAATTTAGGTGATTTACCTTTTTCATGCGC-CCAAATACAGAACACCAACTTCTTCAAGATCAGCCTGACAGAT
GCTCAGAATAG----------------------CTTGTATGAATAAGATCAGGCTAGGAAGATATTACTCCCTCTCATCT
GATCCATATTACTTGTCCCTTAAACGGAGACGTATTCTTATTGAACGGAGTTGCTGGCTGTCGTGAACCAAATGGAGTTG
ATGGCTCGCTGCAGAGCCAAACGGAGCAGCTTGGCTTCCTGAACCAACTCCACTCTGCGCTACTTAAGCAAATCACACGG
CAGATGCCCGTAACCTCACGACCGAGCCAAGATGCAACCACAAGGTCGTGCCCACATCCTTACCCGAGCCTGCATTGCTC
TCACGCTCCTACTAATCACGGTAAACACCGCGTCGGGCCGCCGCCCGGCAGGCCACAGCCCCCCGCCCACTCCCCACGGC
TCCGGCCAGACCATAACGCTCTACACCAACGGAGGCGCGCCACCAAATGCCGGCGGCACCCCTTCCTCGAAACACCCTGC
CTTCACCAGCCAAGGCCCGATCGGCCACCCCGGCAGCTGGCTGCGCGCCTTGACGCGGCCTGGGGCGCTCCGCCCCGGCA
CGGTGACCGTCGTCGATGAGCAATTCCACGGCAAGAGAGAGTTTGGGCTGCCCTTGGCTGGGAAGCTGCAGGGCGTTCTT
GTCACCAGCTTGGATGATAACAGCAGCCGTATGGTGGCAGTGAAGGCCCTGTTCACCGGCGCTGGCACGCAGGATAGCAT
CAGGTTCTTCGGAGTCCACCGTGATGGCCAGGAGGAGTGTCATGTCGCGGTGGTCGGAGGGACGGGAAGGTACGACGGCA
CCACCGGTTTCGCTGTTATCAGAGCAGCGGATGTACCTGAAACAAGCGGAAATGTCAGCTTCAGCAGGATTCTTAGTTTC
AGTGTGCACCTCAAGTGAAGGCTGTGAAG---------TCTCACATACCATTCTGC-AATCAACTTCTCTGCAAGAAGAT
TCAGAGTTTTCAACAAGTGAAACTTGTACATTGACAGTTCGACACACACCGAAGGAACGAGACTTAACTGAACAGGATAT
ATATGCAATCTCATCCCATTACATTTCACTTATATCAAGTATTCATTTTACAGTTAGGAGTTAACTGAAAGTCCAAAACT
GAACCCAATAGCTCCTGAAATACAACCTCTTCACCTATCTTTCACTTCACTTCTATAGTTCCACATGTGGACAAAAAACC
ATTGGTTACTTCTGTCCAGTCTCACCAAGACGAAAACAAATTTAAATGATTCTACAAGGTCGTTATACAAACACAGAATT
GTACTGGATGGATCCAGTTGGTGAAGCACATTTGCCTATATTCGCAGCATTCAGAACCAAATAGATTCATCTCAGTGTTG
CCTTGATTACTCATCCAAGATCCTTTTGCGGAAATCTGTCACCATCAAGGGAAGGCCTTCCTTCAGAGATACCTTTGGCT
CCCAACCTAGCAGTTGCTTGGCCTTGGTAATATCGGGCTTTCTCATATGGGGATCATCAGCTGTGTTGGGCTTGAATTCA
ATTGTCGACATTGGGTCAATTGTTTCCTTCACAACCTGGAAAAAGGCAGGATATTCATTTACTACGAACCATTTTAGATT
AAA-A----GTATCTAAAAACACTCTTGTACAGACCTCTGCAAGTTCCAACATGGTGAACTCTCCTGGGTTTCCCAGATT
GAAAGGGCCAATATGTTCACTCTCCATCAGAGCCATCAATCCAGCAACCTATTAGACATGGATGGAAATATCATGACAAA
CTTA-GACTTGATAAGAGAAATCAAAAGGTCTGTATAGCCATTGATCTGCACTCATCTAATAAAGATAAGCAAGCAGGTG
ATATGATTAAAAAACATTTGATATTTGTATGCAAAGGGGAAAAGTAGATGCAACAGACAAAAATACTGAAGCTA
>chr3B_150
ATAGT---------------------------------------------------------------------------
---------------------------------------------------------------------------TTTTG
GGGAAGGGGTAGAAGTAGCTTAACTCCTCAAACTGATTT-TTAGGGAGTTATAAGCCTTTTTGGAGCGGCCAGAAATGCT
CTAATCCTACGGTACTTTTCAATCGCCAATACGCTCTTGAGCTCACATGACCAACAACCTGAAGAGGTTGTCACGTTGAT
TTCATCTTAACCTGAGGAATGTTCCAGGAAATTTTAGTTCTTCCATGTGCAACTAAGATTTCATCTTAACCAGAAGAGGT
TATCTGATACTACATCCAAGGTCAGAGATCGTCGAAGTGGGGGACAGGGTCTGGTCATGAATTAGCATGTGCAGCAAAGT
ACATGA------TAATTCTTACACGATCTAATCAACAAACAGTAATGTGAAACGCAAAAGACCAGAATCAAATTGTTCTC
TAGGGACTAATGGAAGACCAGAGTGCAGCAACTACGAAAAAAAATGCCCCATGCGCTCTCCCCAAGAAGTCTTGGCGCCT
GCTTACCAAGTCGTGACAGGGGAGGACAGTCGAATGACCTGAGCCGGCAGCAGAGAATTCTTGGAGACATTGTTGCGCAA
CAGGTGTAGTTTAGGTGGTTTAACCTTTTCCTTGTGTCCAAATACAGAACACCAACTTCTTCAAGATCAGCCTGATAGAG
GCCATGGTTCCAGAATATAAGCTCTTTTATGAACTTTTATGAACAAGATCAGGCTAGGAGCCTAGGAGGATGGTA-----
-----------------------------------TCTTACTGAAGGGAGTTGCTGGCTGACACGAGCCAAATGGAGCTG
CTGGTTCGTTGCAGAGCCAAATGGAGCAGTTTGGCTTTGTGAACCAACTCCACTCTGCGCTACTTAAGCAAATCACACGG
CAGATGACCGTAACCTCACAACCGAGCCAAGATGCAACCACAAGGTCGTGCCCACATCCTCACCCGAGCCTGCATTGCTC
TCACGCTCCTACTAACCACGGTAAACACCGCGTCGGGCCGCCGTCC---------------CCCGCCCCCTACCCATGGC
TCCGGCCAGACCATAACGCTCTACACCATCGGAGCCGCACCACCAAATGCCGGCGGCACCCCTTCCTCGAAACACCCCGC
CTTCACCAGCCAAGGCCCGATCGGCCACCCCGGCAGCTGGCTGCGCACCTTGACGCTGCCTGGAGCGCTTCGGCCTGGCA
CTGTGACCGTGATTGACGAGCAGTTCCACGGCAAGAGAGAGTTTGGGCTGCCCTTGGCTGGGAAGCTGCAGGGCGTTCTT
GTCACCAGCTTGGATGATAACAGCAGCCGTATGGTGGCAGTGAAGGCCCTGTTCACCGGCGCTGGCGCAGAAGACAGCAT
CAGGTTCTTCGGAGTCCATCGTGATGGCCAGGAGGAGTCTCATGTCGCGGTGGTCGGAGGGACGGGAAGGTACGACGGCA
CCACCGGTTTCGCTGTTATCAGAGCAGCGGATGTACCTGAAACAAGCGGAAATGTCAGCTTCAGCAGGATTCTTAGTTTC
AGTGTGCACCTCAAGTGAAGGCCGTGAAG---------CCTCACATACCATTCTGCAAATCAACTTCTCTGCAAGAAGCT
TCAGAGTTTTCGACAAGTGAAACTTGTAGACCGACAGTTCAAAACACACCGAAGGAACGAGACTTAACTGAACAGGATAT
ATATGCAATCTCATCCCATTACATTTCACTTATATTAAGTATTCATTTTACAGTTAGGAGTTAACTGGAAGTCCAAAACT
GAACCCAATAGCTCCTGAAATACAACCTCTTCACCTATCTTTCAATTCACTTCTATAGTTCCACATGTGGACAAAAAACC
ATTGGTTACTTCTGTCCAGTCTCACCAAGACGAAAACAAATTTAAATGATTCTACAAGGTCGTTATACAAACACAGAATT
ATACTGAATGGATCCAGTTGGTGAAGCACGTTTGCCTATATTCGCAGCATTCAGAACCGAATAGATTCATCTCAGTGTTG
CCTTGGTTACTCATCCAAGATCCTTTTGCGGAAATCTGTCACCATCAAGGGAAGGCCTTCCTTCAGAGATACCTTTGGCT
CCCAACCTAGCAGTTGCTTGGCCTTGGTAATATCGGGCTTTCTCATATGGGGATCATCAGCAGTGTTGGGCTTGAATTCA
ATTGTCGACATTGGGTCAATTGTTTCCTTCACAACCTGGAAAAAGGCAGGATATTCATTTACTACGAACCATTTTAGATT
AAA-AAAAAGTATCTAACAACACTCTTGTGCAGACCTCTGCAAGTTCCAACATGGTGAACTCTCCTGGGTTTCCCAGATT
GAAAGGGCCAATATGTTCACTCTCCATCAGAGCCATCAATCCAGCAACCTAAAAGACATGGATGGAAATATCATGACAAA
CTTA-GACTTGATAAGAGAAATCAAAAGGTCTGTGTAGCCATTGATCTGCATTCATCTAATAAAGATAAGCAAGCAGGTG
ATATGATTAAAAAACATTTGATATTTGTATGCAAAGGGGAAAAGTAGATGCAACAGACAAAAATCCTGAAGCTA
>chr3A_150
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---------------------------------------------------------------------ATAGATTTTGG
GGGAAGGGCAAGAAGTAGCTTAACTCCTCAAACTGATTTTTTAGTGAGTTATAAGCCTTGTTGGAGTGGACAGAAATGCT
CTAATCCTACATTACTTTTCAATCGCCAATACGCTCTTGAGCTCACATGACCAACAACCTGA-----------------T
TTCATCTTAACCTGAGGAATGATCCAGGAAATTCTAATTCTTCCACGAAGGAATCAC-----------------------
TATCTGATACTACATCCAAGGTCACAGATCGTCAAAGTGGGGGACAGCGTCTGGTCATGAATTAGCATCCATGGTC----
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-----------------------------------TTTGTGAACCAAATGGGGCTGCTGGTTCGTTGCA-----------
----------------------------------------------------------------GAGCCAAATGGAGCTG
CTGGTTCGTTGCAGAGCCAAATGGAGCAGTTTGCCTTTGTGAACCAACTCCGCACTGCGCTACATAAGCAAATCACACAG
GAAACGCCCGTAACCTCACGACTGAG-CAAGATGCAACCACAAGATCGTGCCCACATCCTCACCGGAGCCTGCATTGCTC
TCACGCTCCTACTAAGCACTGTAAACACGGCGTCCAGCCGCCGTCCGGCAGGCCACAGCCCCCCGCCCCCTCCCCACGGC
TCCGGCCAGACCATAACGCTCTACACCAATGGAGCTGCACCACCAAACGCCGGCGGCACCCCTTCCTCGAAACACCCGGC
CTTCACCAGCCAAGGCCCGATCGGCCACCCCGGCAGCTGGCTACGCACCTTGACGCGGCCTGGGGCGCTCCGCCCCGGCA
CGGTGACCGTCGTCGACGAGCAGTTCCATGGAAAGAGAGAGTTTGGGCTGCCCTTGGCTGGGAAGCTGCAGGGCGTTCTT
GTCACCAGCTTGGATGATAACAGCAACCATATAGTTGCAGTGAAGGCCCTGTTCACCGGCGATGGCGCGGAAGACAGCAT
CAGGTTCTTCGGAATCCATCACAACGGTCAGGAGGAGTCCCATGTCGCGGTGGTCGGAGGGACGGGGAGGTATGACAGCG
CCACCGGTTTCGCTGTTATTAGAGCAGCAGATGTACCTGAAACAAGGGGAAATGACAGCTTCAGCAGGAATCTCAGTTTC
AGTGTGCTCCTCAAGTGAAGGCTGTGAAGGCTGTGAAGTCTCACATACCATTCTGCAAATCAACTTCTCCGCAAGAAGCT
TCAGAGTTTTCGACAAGTGAAACTTGTAGATTGACAGTTCAACACACACCGAAGGAACAAGACTTAACTGAACAGGATAT
ATATGCAATCTCATCCCATTACATTTCACTCATATCAAGTATTCATTTTACAGTTAGGAGTTAACTGGAAGTCCAAAACT
GAACCCAATAGCTCCTGAAATACAATCTCTTCACCTATCTTTCACTGCACTTCTATAGTTCCACATGTGGACAAAAAACC
ATTGGTTACTTCTGTCCAGTCTCACCAAGACGAAAACAAATTTAAATGATTCTACAAGGTCGTTATACAAACACAGAATT
GTACTGAACGGATCCAGTTGGTGAAGCGCGTTTGCCTATATTCGCAGCATTCAGAACCAAATAGATTCATCTCACTGTTG
CCTTGATTACTCATCCAAGATCCTTTTGCGGAAATCTGTCACCATCAAGGGAAGGCCTTCCTTCAGAGATACCTTTGGCT
CCCAACCTAGCAGTTGCTTGGCCTTGGTAATATCGGGCTTTCTCATATGGGGATCATCGGCTGTGTTGGGCTTGAATTCA
ATTGTCGACATTGGGTCAATTGTTCCCTTCACAACCTGGAAAAAGGCAGGATATTCATTTACTACGAACCATTTTAGATT
AAAAAAAAAGTATCTAAAAACACTCTTGTACAGACCTCTGCAAGTTCCAACATGGTGAACTCTCCTGGGTTTCCCAGATT
GAAAGGGCCAATATGTTCACTCTCCATCAGAGCCATCAATCCAGCAACCTAAAAGACATGGATGGAAATATCATGACAAA
CTTAAGACTTGATAAGAGAAATCAAAAGGTCTGTGTAGCCATTGATCTGCATTCATCTAATAAAGATAAGCAAGCAGGTG
ATATGATGAAAAAACATTTGATATTTGTATGCAAAGGGGAAAAATAGATGCAACAGACAAAAATACTGAAGCTA
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
---------------------------------------------S---------------------S------------
-------S------------------------------------------------------------------------
---------------------------------------------------S----------------------------
----------------S------------------------SS-----S---S--------------------S-S-S--
--SSS-SSSSSS----S-------S---------------------------S-S-------------------S-----
------------------------------------S----S---------S--S-------S-----------------
---------------S------------------------------S--------------------------------S
--------S--------S----S-S-----S-SSSS---------------------------------------S---S
--SSS-SS-SS-------------------------S------S---------------SSS------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S--------------S-SS--S----------S--
S---S---S------------S-------S-------SS-----------------------------------------
------------------------------------------------------------S-------------------
---------------S---------------------------S------------------------S-----------
----------------------------------S---S--------------------------------------S--
----------------------------------------------S---------------------------------
----------------S-----S---------------------------------------------------------
------------------------------------------------------------------S--S-S--S-----
------------------S-------------------S-----------------------------------------
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------------------------------------------------------------------------------S-
-----------S----------------S-----------S---------------------------------------
-------------------------------------------------------------------S------------
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------S----------------------S--------------------------------------------------
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---------------------------------------------------SS---------------------------
----------------------------------S----------------S----------------------------
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>forward_95
---------------------------------------------------------------------------GGTCC
TCTTAGGCACCACAC-----------------------------------------------------------------
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>reverse_1801
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----------------------------------------GACACACACCGAAGGAACGA--------------------
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