Multiple sequence alignment - TraesCS3D01G333000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G333000 chr3D 100.000 3613 0 0 1 3613 445032076 445035688 0.000000e+00 6673
1 TraesCS3D01G333000 chr3D 84.116 277 34 7 3343 3613 560940803 560940531 3.580000e-65 259
2 TraesCS3D01G333000 chr3D 96.610 118 4 0 3058 3175 14846671 14846788 2.850000e-46 196
3 TraesCS3D01G333000 chr3A 93.335 3091 167 14 1 3059 586417332 586420415 0.000000e+00 4530
4 TraesCS3D01G333000 chr3A 96.000 125 4 1 3056 3180 203993511 203993388 6.120000e-48 202
5 TraesCS3D01G333000 chr3A 94.783 115 6 0 3174 3288 586420414 586420528 2.870000e-41 180
6 TraesCS3D01G333000 chr3B 93.089 3082 148 38 1 3059 583387202 583390241 0.000000e+00 4451
7 TraesCS3D01G333000 chr3B 86.822 258 31 3 3343 3598 117922701 117922445 5.900000e-73 285
8 TraesCS3D01G333000 chr3B 96.639 119 4 0 3057 3175 658489668 658489550 7.910000e-47 198
9 TraesCS3D01G333000 chr3B 87.209 172 8 8 3174 3345 583390240 583390397 2.220000e-42 183
10 TraesCS3D01G333000 chr1B 87.546 273 32 2 3343 3613 359208726 359208454 7.530000e-82 315
11 TraesCS3D01G333000 chr1B 96.694 121 4 0 3057 3177 184461545 184461425 6.120000e-48 202
12 TraesCS3D01G333000 chr6B 86.081 273 35 3 3343 3613 82007390 82007661 1.270000e-74 291
13 TraesCS3D01G333000 chr5B 86.873 259 31 3 3342 3598 528574280 528574537 1.640000e-73 287
14 TraesCS3D01G333000 chr5B 85.145 276 36 5 3340 3613 449613849 449614121 9.880000e-71 278
15 TraesCS3D01G333000 chr5D 85.000 280 38 4 3336 3613 448333311 448333588 7.640000e-72 281
16 TraesCS3D01G333000 chr7D 85.496 262 37 1 3338 3598 577703888 577704149 4.600000e-69 272
17 TraesCS3D01G333000 chr7B 85.551 263 31 5 3340 3598 562382465 562382206 5.950000e-68 268
18 TraesCS3D01G333000 chr4D 97.521 121 3 0 3058 3178 367720770 367720890 1.310000e-49 207
19 TraesCS3D01G333000 chr4D 93.233 133 8 1 3045 3177 494876041 494875910 1.020000e-45 195
20 TraesCS3D01G333000 chr5A 96.063 127 4 1 3058 3183 649239249 649239375 4.730000e-49 206
21 TraesCS3D01G333000 chr2D 96.032 126 4 1 3058 3182 599946113 599946238 1.700000e-48 204
22 TraesCS3D01G333000 chr7A 94.488 127 7 0 3054 3180 642901371 642901497 2.850000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G333000 chr3D 445032076 445035688 3612 False 6673 6673 100.000 1 3613 1 chr3D.!!$F2 3612
1 TraesCS3D01G333000 chr3A 586417332 586420528 3196 False 2355 4530 94.059 1 3288 2 chr3A.!!$F1 3287
2 TraesCS3D01G333000 chr3B 583387202 583390397 3195 False 2317 4451 90.149 1 3345 2 chr3B.!!$F1 3344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 783 1.222113 GTCTTCTGCAGCCCTACCC 59.778 63.158 9.47 0.0 0.0 3.69 F
2030 2073 0.037605 CTAAGGGACGGTGTGTGGAC 60.038 60.000 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2121 0.250166 AGTTGTAAGTGGCCGTGTCC 60.250 55.0 0.0 0.0 0.0 4.02 R
3065 3116 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.959226 AGGCACAACCGCTAACACG 60.959 57.895 0.00 0.00 46.52 4.49
87 88 3.181465 ACGGTTATCTCGCTTGGATCAAT 60.181 43.478 0.00 0.00 0.00 2.57
255 256 1.315257 GCAGCAAACCCGGTGATCAT 61.315 55.000 0.00 0.00 36.48 2.45
302 303 2.689766 GCATCTCGTCGAACGCAC 59.310 61.111 0.00 0.00 42.21 5.34
303 304 2.789203 GCATCTCGTCGAACGCACC 61.789 63.158 0.00 0.00 42.21 5.01
304 305 1.443702 CATCTCGTCGAACGCACCA 60.444 57.895 0.00 0.00 42.21 4.17
778 783 1.222113 GTCTTCTGCAGCCCTACCC 59.778 63.158 9.47 0.00 0.00 3.69
868 895 3.055094 GGCATTACCTTGTCTGGAGAGAA 60.055 47.826 0.00 0.00 34.51 2.87
869 896 4.187694 GCATTACCTTGTCTGGAGAGAAG 58.812 47.826 6.58 6.58 42.89 2.85
946 981 4.733523 GCGTCCAAGACAAAAAGATTGTGT 60.734 41.667 0.00 0.00 31.96 3.72
975 1010 2.053865 CCTTCCCGGGCGTACTACA 61.054 63.158 18.49 0.00 0.00 2.74
1666 1709 4.096003 CATTGAGCCCGGGGTCGT 62.096 66.667 39.55 30.25 44.68 4.34
1686 1729 1.153289 CAGTTCCATGGCCTCCTCG 60.153 63.158 6.96 0.00 0.00 4.63
1747 1790 0.458197 CTGCTTCTGTCCAGCGAGAG 60.458 60.000 0.00 0.00 40.45 3.20
1859 1902 2.362369 CGTCATGGAGCTCAGGGGT 61.362 63.158 17.19 0.00 0.00 4.95
1913 1956 1.214062 CTCGTGCTTCTCGAAGGCT 59.786 57.895 8.59 0.00 38.80 4.58
1967 2010 1.895707 CATGAAGGAGGCCGGCATC 60.896 63.158 32.22 32.22 0.00 3.91
2030 2073 0.037605 CTAAGGGACGGTGTGTGGAC 60.038 60.000 0.00 0.00 0.00 4.02
2039 2082 1.961277 GTGTGTGGACGAGGCAAGG 60.961 63.158 0.00 0.00 0.00 3.61
2042 2085 4.021925 GTGGACGAGGCAAGGGCT 62.022 66.667 0.00 0.00 42.48 5.19
2073 2116 1.893315 CATGGAGGAGAAGGGGGTTA 58.107 55.000 0.00 0.00 0.00 2.85
2078 2121 0.908180 AGGAGAAGGGGGTTACACCG 60.908 60.000 0.00 0.00 39.83 4.94
2262 2305 8.542926 TCTTTGATCTGTTGGATAAGATGAAGA 58.457 33.333 0.00 0.00 33.26 2.87
2267 2310 6.401394 TCTGTTGGATAAGATGAAGACACTG 58.599 40.000 0.00 0.00 0.00 3.66
2444 2487 2.774234 CCTGAATGGGAAGCTAGAGGAA 59.226 50.000 0.00 0.00 0.00 3.36
2489 2532 2.702270 AAGCCAAGGGATTTTCACCT 57.298 45.000 0.00 0.00 39.21 4.00
2540 2583 1.809209 GCGTTCAGGCAGAGAGCTC 60.809 63.158 5.27 5.27 44.79 4.09
2560 2603 2.684843 CCAAGGCGTCAGCTTCTGC 61.685 63.158 0.00 0.00 44.37 4.26
2571 2614 0.108585 AGCTTCTGCCGGTTCAAGAA 59.891 50.000 1.90 7.06 40.80 2.52
2652 2695 8.311395 TGGAAGTGATCTATAGAAACAGACAT 57.689 34.615 6.52 0.00 0.00 3.06
2707 2752 8.980481 TTGGAGAGAGATTATTTGGTTATTCC 57.020 34.615 0.00 0.00 0.00 3.01
2708 2753 8.337118 TGGAGAGAGATTATTTGGTTATTCCT 57.663 34.615 0.00 0.00 37.07 3.36
2730 2775 6.903534 TCCTAAAGATGAGTCTGATTACCCTT 59.096 38.462 0.00 0.00 34.13 3.95
2731 2776 6.989169 CCTAAAGATGAGTCTGATTACCCTTG 59.011 42.308 0.00 0.00 34.13 3.61
2748 2793 4.098654 ACCCTTGAGTGATCTTCATCTACG 59.901 45.833 0.00 0.00 0.00 3.51
2818 2866 3.808174 ACTTTCGTTAAGAGTTGTCAGCC 59.192 43.478 6.97 0.00 37.30 4.85
2845 2893 1.661341 CAGCTGAGGGTATGCTGTTC 58.339 55.000 8.42 0.00 46.23 3.18
2860 2908 2.098443 GCTGTTCGGTTTCCTTTGTTCA 59.902 45.455 0.00 0.00 0.00 3.18
2878 2927 9.226345 CTTTGTTCAAGTCTGTATCAAACTTTC 57.774 33.333 0.00 0.00 31.04 2.62
2920 2971 1.855360 GAGCTCTGCCGTATTCGAAAG 59.145 52.381 6.43 0.00 39.71 2.62
2921 2972 1.204941 AGCTCTGCCGTATTCGAAAGT 59.795 47.619 0.00 0.00 39.71 2.66
2931 2982 6.035220 TGCCGTATTCGAAAGTAGTATGTTTG 59.965 38.462 0.00 0.00 39.71 2.93
2945 2996 6.909550 AGTATGTTTGCCCAGTTATTTTCA 57.090 33.333 0.00 0.00 0.00 2.69
2965 3016 5.426689 TCATTCTCACTAGATTGCTTGGT 57.573 39.130 0.00 0.00 34.50 3.67
2971 3022 4.832248 TCACTAGATTGCTTGGTTGTAGG 58.168 43.478 0.00 0.00 0.00 3.18
2991 3042 6.547880 TGTAGGTTGGAATTAGAAAGTGCAAA 59.452 34.615 0.00 0.00 38.47 3.68
2995 3046 7.602753 GGTTGGAATTAGAAAGTGCAAACTAT 58.397 34.615 2.74 0.00 40.60 2.12
3057 3108 5.876357 TGTAACCCTTCTTTTGTAGCTCAT 58.124 37.500 0.00 0.00 0.00 2.90
3058 3109 7.011499 TGTAACCCTTCTTTTGTAGCTCATA 57.989 36.000 0.00 0.00 0.00 2.15
3059 3110 6.877322 TGTAACCCTTCTTTTGTAGCTCATAC 59.123 38.462 0.00 0.00 34.72 2.39
3060 3111 5.763876 ACCCTTCTTTTGTAGCTCATACT 57.236 39.130 0.00 0.00 35.24 2.12
3061 3112 5.735766 ACCCTTCTTTTGTAGCTCATACTC 58.264 41.667 0.00 0.00 35.24 2.59
3062 3113 5.119694 CCCTTCTTTTGTAGCTCATACTCC 58.880 45.833 0.00 0.00 35.24 3.85
3063 3114 5.119694 CCTTCTTTTGTAGCTCATACTCCC 58.880 45.833 0.00 0.00 35.24 4.30
3064 3115 5.104735 CCTTCTTTTGTAGCTCATACTCCCT 60.105 44.000 0.00 0.00 35.24 4.20
3065 3116 5.599999 TCTTTTGTAGCTCATACTCCCTC 57.400 43.478 0.00 0.00 35.24 4.30
3066 3117 4.406003 TCTTTTGTAGCTCATACTCCCTCC 59.594 45.833 0.00 0.00 35.24 4.30
3067 3118 1.982660 TGTAGCTCATACTCCCTCCG 58.017 55.000 0.00 0.00 35.24 4.63
3068 3119 1.214673 TGTAGCTCATACTCCCTCCGT 59.785 52.381 0.00 0.00 35.24 4.69
3069 3120 1.881324 GTAGCTCATACTCCCTCCGTC 59.119 57.143 0.00 0.00 0.00 4.79
3070 3121 0.468400 AGCTCATACTCCCTCCGTCC 60.468 60.000 0.00 0.00 0.00 4.79
3071 3122 1.797211 GCTCATACTCCCTCCGTCCG 61.797 65.000 0.00 0.00 0.00 4.79
3072 3123 0.179026 CTCATACTCCCTCCGTCCGA 60.179 60.000 0.00 0.00 0.00 4.55
3073 3124 0.256752 TCATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
3074 3125 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
3075 3126 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
3076 3127 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3077 3128 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
3078 3129 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
3079 3130 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
3080 3131 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
3081 3132 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3082 3133 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
3083 3134 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
3084 3135 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
3085 3136 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3086 3137 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
3087 3138 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
3088 3139 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
3089 3140 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
3090 3141 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
3091 3142 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3092 3143 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3093 3144 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
3094 3145 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3095 3146 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3096 3147 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3097 3148 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3098 3149 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3099 3150 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3100 3151 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3101 3152 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3102 3153 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3103 3154 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3104 3155 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3105 3156 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3106 3157 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3107 3158 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
3108 3159 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
3109 3160 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
3110 3161 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
3111 3162 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
3112 3163 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
3113 3164 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
3114 3165 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
3115 3166 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
3116 3167 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
3128 3179 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3129 3180 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3130 3181 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
3131 3182 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
3132 3183 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
3133 3184 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3134 3185 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3135 3186 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3136 3187 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
3137 3188 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3138 3189 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3139 3190 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3140 3191 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3141 3192 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3142 3193 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3143 3194 3.814504 ACATCCATTTGAGGGACAAGT 57.185 42.857 0.00 0.00 39.77 3.16
3144 3195 4.118168 ACATCCATTTGAGGGACAAGTT 57.882 40.909 0.00 0.00 39.77 2.66
3145 3196 4.482990 ACATCCATTTGAGGGACAAGTTT 58.517 39.130 0.00 0.00 39.77 2.66
3146 3197 4.281688 ACATCCATTTGAGGGACAAGTTTG 59.718 41.667 0.00 0.00 39.77 2.93
3147 3198 3.230134 TCCATTTGAGGGACAAGTTTGG 58.770 45.455 0.00 0.00 39.77 3.28
3148 3199 2.299867 CCATTTGAGGGACAAGTTTGGG 59.700 50.000 0.00 0.00 39.77 4.12
3149 3200 3.230134 CATTTGAGGGACAAGTTTGGGA 58.770 45.455 0.00 0.00 39.77 4.37
3150 3201 2.358322 TTGAGGGACAAGTTTGGGAC 57.642 50.000 0.00 0.00 34.20 4.46
3151 3202 1.217916 TGAGGGACAAGTTTGGGACA 58.782 50.000 0.00 0.00 0.00 4.02
3152 3203 2.024846 TTGAGGGACAAGTTTGGGACAA 60.025 45.455 0.00 0.00 37.48 3.18
3153 3204 3.939454 TTGAGGGACAAGTTTGGGACAAG 60.939 47.826 0.00 0.00 37.48 3.16
3163 3214 3.811031 TGGGACAAGCTTTTTCGGA 57.189 47.368 0.00 0.00 31.92 4.55
3164 3215 1.314730 TGGGACAAGCTTTTTCGGAC 58.685 50.000 0.00 0.00 31.92 4.79
3165 3216 1.314730 GGGACAAGCTTTTTCGGACA 58.685 50.000 0.00 0.00 0.00 4.02
3166 3217 1.266989 GGGACAAGCTTTTTCGGACAG 59.733 52.381 0.00 0.00 0.00 3.51
3167 3218 2.218603 GGACAAGCTTTTTCGGACAGA 58.781 47.619 0.00 0.00 0.00 3.41
3168 3219 2.224314 GGACAAGCTTTTTCGGACAGAG 59.776 50.000 0.00 0.00 0.00 3.35
3169 3220 2.222027 ACAAGCTTTTTCGGACAGAGG 58.778 47.619 0.00 0.00 0.00 3.69
3170 3221 1.537202 CAAGCTTTTTCGGACAGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
3171 3222 1.056660 AGCTTTTTCGGACAGAGGGA 58.943 50.000 0.00 0.00 0.00 4.20
3172 3223 1.002544 AGCTTTTTCGGACAGAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
3252 3303 4.476862 CATATTCATACTGGTCCGACTCG 58.523 47.826 0.00 0.00 0.00 4.18
3253 3304 0.454600 TTCATACTGGTCCGACTCGC 59.545 55.000 0.00 0.00 0.00 5.03
3275 3326 7.905126 TCGCATACTTTCGCATAATAATATGG 58.095 34.615 0.08 0.00 39.49 2.74
3281 3332 6.886459 ACTTTCGCATAATAATATGGGCAGAT 59.114 34.615 15.18 1.01 46.56 2.90
3296 3347 7.896383 ATGGGCAGATATTTTAGCTTTACAA 57.104 32.000 0.00 0.00 0.00 2.41
3297 3348 7.710676 TGGGCAGATATTTTAGCTTTACAAA 57.289 32.000 0.00 0.00 0.00 2.83
3299 3350 8.757877 TGGGCAGATATTTTAGCTTTACAAAAT 58.242 29.630 9.31 9.31 37.87 1.82
3351 3402 7.133133 TGGTTTGATACTAAATACTCCCTCC 57.867 40.000 0.00 0.00 0.00 4.30
3352 3403 6.183360 TGGTTTGATACTAAATACTCCCTCCG 60.183 42.308 0.00 0.00 0.00 4.63
3353 3404 6.183360 GGTTTGATACTAAATACTCCCTCCGT 60.183 42.308 0.00 0.00 0.00 4.69
3354 3405 7.270779 GTTTGATACTAAATACTCCCTCCGTT 58.729 38.462 0.00 0.00 0.00 4.44
3355 3406 6.645790 TGATACTAAATACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
3356 3407 5.537674 TGATACTAAATACTCCCTCCGTTCC 59.462 44.000 0.00 0.00 0.00 3.62
3357 3408 3.991683 ACTAAATACTCCCTCCGTTCCT 58.008 45.455 0.00 0.00 0.00 3.36
3358 3409 5.134725 ACTAAATACTCCCTCCGTTCCTA 57.865 43.478 0.00 0.00 0.00 2.94
3359 3410 5.522641 ACTAAATACTCCCTCCGTTCCTAA 58.477 41.667 0.00 0.00 0.00 2.69
3360 3411 5.960202 ACTAAATACTCCCTCCGTTCCTAAA 59.040 40.000 0.00 0.00 0.00 1.85
3361 3412 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
3362 3413 7.786464 ACTAAATACTCCCTCCGTTCCTAAATA 59.214 37.037 0.00 0.00 0.00 1.40
3363 3414 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
3364 3415 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
3365 3416 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3366 3417 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3367 3418 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3368 3419 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3369 3420 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3370 3421 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3371 3422 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3372 3423 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3399 3450 8.873215 AGAGATTCCATTACAAACTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
3400 3451 7.926555 AGAGATTCCATTACAAACTACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
3401 3452 7.788026 AGATTCCATTACAAACTACATACGGA 58.212 34.615 0.00 0.00 0.00 4.69
3402 3453 8.429641 AGATTCCATTACAAACTACATACGGAT 58.570 33.333 0.00 0.00 0.00 4.18
3403 3454 9.701098 GATTCCATTACAAACTACATACGGATA 57.299 33.333 0.00 0.00 0.00 2.59
3437 3488 9.778741 ACATGTTTTAGACTTTAGATTCACTCA 57.221 29.630 0.00 0.00 0.00 3.41
3444 3495 7.992754 AGACTTTAGATTCACTCATTTTGCT 57.007 32.000 0.00 0.00 0.00 3.91
3445 3496 8.038492 AGACTTTAGATTCACTCATTTTGCTC 57.962 34.615 0.00 0.00 0.00 4.26
3446 3497 7.120432 AGACTTTAGATTCACTCATTTTGCTCC 59.880 37.037 0.00 0.00 0.00 4.70
3447 3498 5.801350 TTAGATTCACTCATTTTGCTCCG 57.199 39.130 0.00 0.00 0.00 4.63
3448 3499 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3449 3500 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3450 3501 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3451 3502 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3452 3503 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3453 3504 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3454 3505 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3455 3506 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3456 3507 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3457 3508 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3458 3509 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3459 3510 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3460 3511 3.452755 TTGCTCCGTATGTAGTCCATG 57.547 47.619 0.00 0.00 34.86 3.66
3461 3512 1.686587 TGCTCCGTATGTAGTCCATGG 59.313 52.381 4.97 4.97 34.86 3.66
3462 3513 1.687123 GCTCCGTATGTAGTCCATGGT 59.313 52.381 12.58 0.00 34.86 3.55
3463 3514 2.545952 GCTCCGTATGTAGTCCATGGTG 60.546 54.545 12.58 0.00 34.86 4.17
3464 3515 2.035961 CTCCGTATGTAGTCCATGGTGG 59.964 54.545 12.58 1.55 39.43 4.61
3465 3516 2.036387 CCGTATGTAGTCCATGGTGGA 58.964 52.381 12.58 0.00 45.98 4.02
3479 3530 7.067496 TCCATGGTGGAATCTCTAAATAGAC 57.933 40.000 12.58 0.00 45.00 2.59
3480 3531 6.846505 TCCATGGTGGAATCTCTAAATAGACT 59.153 38.462 12.58 0.00 45.00 3.24
3481 3532 7.348274 TCCATGGTGGAATCTCTAAATAGACTT 59.652 37.037 12.58 0.00 45.00 3.01
3482 3533 8.651389 CCATGGTGGAATCTCTAAATAGACTTA 58.349 37.037 2.57 0.00 40.96 2.24
3492 3543 9.984590 ATCTCTAAATAGACTTATACTCCCTCC 57.015 37.037 0.00 0.00 0.00 4.30
3493 3544 8.102047 TCTCTAAATAGACTTATACTCCCTCCG 58.898 40.741 0.00 0.00 0.00 4.63
3494 3545 7.753630 TCTAAATAGACTTATACTCCCTCCGT 58.246 38.462 0.00 0.00 0.00 4.69
3495 3546 8.223330 TCTAAATAGACTTATACTCCCTCCGTT 58.777 37.037 0.00 0.00 0.00 4.44
3496 3547 6.897706 AATAGACTTATACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
3497 3548 3.564264 AGACTTATACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
3498 3549 3.204831 AGACTTATACTCCCTCCGTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
3499 3550 4.414846 AGACTTATACTCCCTCCGTTCCTA 59.585 45.833 0.00 0.00 0.00 2.94
3500 3551 5.103771 AGACTTATACTCCCTCCGTTCCTAA 60.104 44.000 0.00 0.00 0.00 2.69
3501 3552 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3502 3553 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
3503 3554 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
3504 3555 7.232330 ACTTATACTCCCTCCGTTCCTAAATAC 59.768 40.741 0.00 0.00 0.00 1.89
3505 3556 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
3506 3557 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
3507 3558 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
3508 3559 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
3509 3560 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3510 3561 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3511 3562 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3512 3563 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3513 3564 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3514 3565 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3515 3566 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3516 3567 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
3517 3568 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
3528 3579 8.834749 ACAAGTCTTTTTAGAGATTCCACTAC 57.165 34.615 0.00 0.00 0.00 2.73
3529 3580 8.429641 ACAAGTCTTTTTAGAGATTCCACTACA 58.570 33.333 0.00 0.00 0.00 2.74
3530 3581 9.273016 CAAGTCTTTTTAGAGATTCCACTACAA 57.727 33.333 0.00 0.00 0.00 2.41
3531 3582 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
3532 3583 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
3533 3584 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
3540 3591 7.481642 AGAGATTCCACTACAAACTACATACG 58.518 38.462 0.00 0.00 0.00 3.06
3541 3592 6.570692 AGATTCCACTACAAACTACATACGG 58.429 40.000 0.00 0.00 0.00 4.02
3542 3593 5.981088 TTCCACTACAAACTACATACGGA 57.019 39.130 0.00 0.00 0.00 4.69
3543 3594 6.534475 TTCCACTACAAACTACATACGGAT 57.466 37.500 0.00 0.00 0.00 4.18
3544 3595 5.898174 TCCACTACAAACTACATACGGATG 58.102 41.667 5.94 5.94 39.16 3.51
3546 3597 6.602803 TCCACTACAAACTACATACGGATGTA 59.397 38.462 19.32 19.32 44.77 2.29
3547 3598 7.286087 TCCACTACAAACTACATACGGATGTAT 59.714 37.037 20.64 8.38 45.42 2.29
3548 3599 8.570488 CCACTACAAACTACATACGGATGTATA 58.430 37.037 20.64 9.08 45.42 1.47
3585 3636 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
3586 3637 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
3587 3638 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
3588 3639 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
3589 3640 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
3590 3641 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
3591 3642 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
3592 3643 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
3593 3644 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3594 3645 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3595 3646 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3596 3647 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3597 3648 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3598 3649 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
3599 3650 6.096423 ACTCATTTTGCTCCGTATGTAGTCTA 59.904 38.462 0.00 0.00 0.00 2.59
3600 3651 7.050970 TCATTTTGCTCCGTATGTAGTCTAT 57.949 36.000 0.00 0.00 0.00 1.98
3601 3652 8.173542 TCATTTTGCTCCGTATGTAGTCTATA 57.826 34.615 0.00 0.00 0.00 1.31
3602 3653 8.635328 TCATTTTGCTCCGTATGTAGTCTATAA 58.365 33.333 0.00 0.00 0.00 0.98
3603 3654 9.424319 CATTTTGCTCCGTATGTAGTCTATAAT 57.576 33.333 0.00 0.00 0.00 1.28
3604 3655 8.812147 TTTTGCTCCGTATGTAGTCTATAATG 57.188 34.615 0.00 0.00 0.00 1.90
3605 3656 6.510879 TGCTCCGTATGTAGTCTATAATGG 57.489 41.667 0.00 0.00 0.00 3.16
3606 3657 6.243148 TGCTCCGTATGTAGTCTATAATGGA 58.757 40.000 0.00 0.00 0.00 3.41
3607 3658 6.717997 TGCTCCGTATGTAGTCTATAATGGAA 59.282 38.462 0.00 0.00 0.00 3.53
3608 3659 7.396339 TGCTCCGTATGTAGTCTATAATGGAAT 59.604 37.037 0.00 0.00 0.00 3.01
3609 3660 7.916450 GCTCCGTATGTAGTCTATAATGGAATC 59.084 40.741 0.00 0.00 0.00 2.52
3610 3661 9.179909 CTCCGTATGTAGTCTATAATGGAATCT 57.820 37.037 0.00 0.00 0.00 2.40
3611 3662 9.175312 TCCGTATGTAGTCTATAATGGAATCTC 57.825 37.037 0.00 0.00 0.00 2.75
3612 3663 9.179909 CCGTATGTAGTCTATAATGGAATCTCT 57.820 37.037 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.351017 AGGATTCTTTTGGGCGAGACA 59.649 47.619 0.00 0.00 0.00 3.41
12 13 2.618045 GGAAGGATTCTTTTGGGCGAGA 60.618 50.000 0.00 0.00 46.56 4.04
67 68 3.058639 GCATTGATCCAAGCGAGATAACC 60.059 47.826 0.00 0.00 0.00 2.85
180 181 0.685097 GCGGATGCCCTGTAGGAATA 59.315 55.000 0.00 0.00 31.70 1.75
255 256 0.104487 TGCGGTTACTTGGAACGTGA 59.896 50.000 0.00 0.00 0.00 4.35
302 303 2.202932 CCTGGCGGAATCTCGTGG 60.203 66.667 0.00 0.00 0.00 4.94
303 304 2.892425 GCCTGGCGGAATCTCGTG 60.892 66.667 1.35 0.00 0.00 4.35
304 305 3.390521 TGCCTGGCGGAATCTCGT 61.391 61.111 14.98 0.00 0.00 4.18
331 332 0.035439 CCCTGGTCAACGCCTATGTT 60.035 55.000 0.00 0.00 0.00 2.71
346 347 2.046411 TATGTGCACACCGCCCTG 60.046 61.111 24.37 0.00 41.33 4.45
361 362 0.175073 GGTTCGAGTTCCACGCCTAT 59.825 55.000 0.00 0.00 0.00 2.57
493 494 2.604686 AGCCTCTTCAGGGACGCA 60.605 61.111 0.00 0.00 40.75 5.24
696 697 3.957535 GATGCGCGCCCTTCCATG 61.958 66.667 30.77 0.00 0.00 3.66
723 724 4.097361 GGTTCCCGGCTGACCTCC 62.097 72.222 10.77 0.00 0.00 4.30
778 783 1.088306 AGTAGACGAGAGAGGCGTTG 58.912 55.000 0.00 0.00 42.77 4.10
862 889 1.775385 CCTCCTCCACCTCTTCTCTC 58.225 60.000 0.00 0.00 0.00 3.20
863 890 0.325203 GCCTCCTCCACCTCTTCTCT 60.325 60.000 0.00 0.00 0.00 3.10
868 895 2.040278 CCAGCCTCCTCCACCTCT 59.960 66.667 0.00 0.00 0.00 3.69
869 896 2.039624 TCCAGCCTCCTCCACCTC 59.960 66.667 0.00 0.00 0.00 3.85
946 981 1.044611 CCGGGAAGGGAAAGCAAAAA 58.955 50.000 0.00 0.00 35.97 1.94
975 1010 3.313526 GTGTCAACTGTCAACAGAGCAAT 59.686 43.478 16.71 0.00 46.59 3.56
1024 1059 1.421485 CTGCGCAACATCGAGGAAC 59.579 57.895 13.05 0.00 0.00 3.62
1025 1060 1.741401 CCTGCGCAACATCGAGGAA 60.741 57.895 13.05 0.00 32.41 3.36
1601 1644 2.577785 GATCGCGCTAGCAACGTCC 61.578 63.158 22.11 13.53 45.49 4.79
1666 1709 1.229951 AGGAGGCCATGGAACTGGA 60.230 57.895 18.40 0.00 38.69 3.86
1859 1902 3.598715 ACAACGTCCCTCGCGACA 61.599 61.111 3.71 0.00 44.19 4.35
1913 1956 1.198094 TGACCGAATCCAAGCTCCCA 61.198 55.000 0.00 0.00 0.00 4.37
1967 2010 4.003788 ACCTTCCGGTCTGGCACG 62.004 66.667 0.00 0.00 40.27 5.34
2012 2055 1.808531 CGTCCACACACCGTCCCTTA 61.809 60.000 0.00 0.00 0.00 2.69
2042 2085 1.617018 CCTCCATGCTCCGGACAAGA 61.617 60.000 0.00 5.18 0.00 3.02
2045 2088 2.038813 TCCTCCATGCTCCGGACA 59.961 61.111 0.00 4.37 0.00 4.02
2078 2121 0.250166 AGTTGTAAGTGGCCGTGTCC 60.250 55.000 0.00 0.00 0.00 4.02
2262 2305 2.281692 TGGCTCGCAATGCAGTGT 60.282 55.556 16.47 0.00 0.00 3.55
2267 2310 1.647629 CATCTCTGGCTCGCAATGC 59.352 57.895 0.00 0.00 0.00 3.56
2444 2487 5.620738 TCTCCTCATAATACTTTGCAGCT 57.379 39.130 0.00 0.00 0.00 4.24
2489 2532 6.556974 ATCATTGATTCAGTCTTCTCCTCA 57.443 37.500 0.00 0.00 0.00 3.86
2540 2583 3.793144 GAAGCTGACGCCTTGGCG 61.793 66.667 29.32 29.32 36.60 5.69
2560 2603 0.865769 CGAACCACTTCTTGAACCGG 59.134 55.000 0.00 0.00 0.00 5.28
2571 2614 1.410004 TTGAGAGACACCGAACCACT 58.590 50.000 0.00 0.00 0.00 4.00
2652 2695 2.171027 AGTTACTCCAAAACGACACCCA 59.829 45.455 0.00 0.00 32.00 4.51
2659 2702 5.996669 AGTTTACCAGTTACTCCAAAACG 57.003 39.130 7.08 0.00 32.18 3.60
2707 2752 7.786030 TCAAGGGTAATCAGACTCATCTTTAG 58.214 38.462 0.00 0.00 30.42 1.85
2708 2753 7.400339 ACTCAAGGGTAATCAGACTCATCTTTA 59.600 37.037 0.00 0.00 30.42 1.85
2730 2775 5.644977 ACAACGTAGATGAAGATCACTCA 57.355 39.130 0.00 0.00 33.32 3.41
2731 2776 5.864474 ACAACAACGTAGATGAAGATCACTC 59.136 40.000 0.00 0.00 33.32 3.51
2748 2793 1.227118 CCAAACCGGCCACAACAAC 60.227 57.895 0.00 0.00 0.00 3.32
2783 2828 1.228552 GAAAGTCAGGGCCCTTGCA 60.229 57.895 26.10 6.07 40.13 4.08
2845 2893 3.377172 ACAGACTTGAACAAAGGAAACCG 59.623 43.478 0.00 0.00 40.51 4.44
2860 2908 8.214364 AGAAGGAAGAAAGTTTGATACAGACTT 58.786 33.333 0.00 0.00 39.85 3.01
2878 2927 6.179906 TCTGCCCATTCTATTAGAAGGAAG 57.820 41.667 17.37 14.03 38.18 3.46
2915 2966 4.000988 ACTGGGCAAACATACTACTTTCG 58.999 43.478 0.00 0.00 0.00 3.46
2920 2971 7.822658 TGAAAATAACTGGGCAAACATACTAC 58.177 34.615 0.00 0.00 0.00 2.73
2921 2972 8.588290 ATGAAAATAACTGGGCAAACATACTA 57.412 30.769 0.00 0.00 0.00 1.82
2931 2982 5.904362 AGTGAGAATGAAAATAACTGGGC 57.096 39.130 0.00 0.00 0.00 5.36
2945 2996 5.564550 ACAACCAAGCAATCTAGTGAGAAT 58.435 37.500 0.00 0.00 34.61 2.40
2965 3016 6.065374 TGCACTTTCTAATTCCAACCTACAA 58.935 36.000 0.00 0.00 0.00 2.41
2971 3022 7.542130 CCATAGTTTGCACTTTCTAATTCCAAC 59.458 37.037 0.00 0.00 34.06 3.77
2991 3042 9.020731 CCAAGTTTAAACAGGATAAACCATAGT 57.979 33.333 20.06 0.00 41.83 2.12
2995 3046 9.238368 CTATCCAAGTTTAAACAGGATAAACCA 57.762 33.333 31.18 21.12 42.48 3.67
3057 3108 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
3058 3109 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
3059 3110 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
3060 3111 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
3061 3112 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
3062 3113 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3063 3114 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
3064 3115 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
3065 3116 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
3066 3117 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3067 3118 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
3068 3119 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
3069 3120 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
3070 3121 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
3071 3122 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
3072 3123 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
3073 3124 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3074 3125 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3075 3126 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3076 3127 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3077 3128 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3078 3129 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3079 3130 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3080 3131 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3081 3132 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3082 3133 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3083 3134 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3084 3135 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
3085 3136 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
3086 3137 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
3087 3138 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
3088 3139 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
3089 3140 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
3090 3141 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
3091 3142 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3092 3143 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3104 3155 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3105 3156 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
3106 3157 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
3107 3158 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3108 3159 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3109 3160 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3110 3161 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
3111 3162 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
3112 3163 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
3113 3164 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
3114 3165 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3115 3166 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3116 3167 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3117 3168 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3118 3169 6.386927 ACTTGTCCCTCAAATGGATGTATCTA 59.613 38.462 0.00 0.00 35.48 1.98
3119 3170 5.192522 ACTTGTCCCTCAAATGGATGTATCT 59.807 40.000 0.00 0.00 35.48 1.98
3120 3171 5.440610 ACTTGTCCCTCAAATGGATGTATC 58.559 41.667 0.00 0.00 35.48 2.24
3121 3172 5.456921 ACTTGTCCCTCAAATGGATGTAT 57.543 39.130 0.00 0.00 35.48 2.29
3122 3173 4.927267 ACTTGTCCCTCAAATGGATGTA 57.073 40.909 0.00 0.00 35.48 2.29
3123 3174 3.814504 ACTTGTCCCTCAAATGGATGT 57.185 42.857 0.00 0.00 35.48 3.06
3124 3175 4.322198 CCAAACTTGTCCCTCAAATGGATG 60.322 45.833 0.00 0.00 36.92 3.51
3125 3176 3.834231 CCAAACTTGTCCCTCAAATGGAT 59.166 43.478 0.00 0.00 36.92 3.41
3126 3177 3.230134 CCAAACTTGTCCCTCAAATGGA 58.770 45.455 0.00 0.00 36.92 3.41
3127 3178 2.299867 CCCAAACTTGTCCCTCAAATGG 59.700 50.000 0.00 0.00 35.48 3.16
3128 3179 3.005791 GTCCCAAACTTGTCCCTCAAATG 59.994 47.826 0.00 0.00 35.48 2.32
3129 3180 3.230976 GTCCCAAACTTGTCCCTCAAAT 58.769 45.455 0.00 0.00 35.48 2.32
3130 3181 2.024846 TGTCCCAAACTTGTCCCTCAAA 60.025 45.455 0.00 0.00 35.48 2.69
3131 3182 1.566703 TGTCCCAAACTTGTCCCTCAA 59.433 47.619 0.00 0.00 34.61 3.02
3132 3183 1.217916 TGTCCCAAACTTGTCCCTCA 58.782 50.000 0.00 0.00 0.00 3.86
3133 3184 2.230660 CTTGTCCCAAACTTGTCCCTC 58.769 52.381 0.00 0.00 0.00 4.30
3134 3185 1.754201 GCTTGTCCCAAACTTGTCCCT 60.754 52.381 0.00 0.00 0.00 4.20
3135 3186 0.673985 GCTTGTCCCAAACTTGTCCC 59.326 55.000 0.00 0.00 0.00 4.46
3136 3187 1.692411 AGCTTGTCCCAAACTTGTCC 58.308 50.000 0.00 0.00 0.00 4.02
3137 3188 3.801114 AAAGCTTGTCCCAAACTTGTC 57.199 42.857 0.00 0.00 0.00 3.18
3138 3189 4.503910 GAAAAAGCTTGTCCCAAACTTGT 58.496 39.130 0.00 0.00 0.00 3.16
3139 3190 3.551485 CGAAAAAGCTTGTCCCAAACTTG 59.449 43.478 0.00 0.00 0.00 3.16
3140 3191 3.430236 CCGAAAAAGCTTGTCCCAAACTT 60.430 43.478 0.00 0.00 0.00 2.66
3141 3192 2.100749 CCGAAAAAGCTTGTCCCAAACT 59.899 45.455 0.00 0.00 0.00 2.66
3142 3193 2.100087 TCCGAAAAAGCTTGTCCCAAAC 59.900 45.455 0.00 0.00 0.00 2.93
3143 3194 2.100087 GTCCGAAAAAGCTTGTCCCAAA 59.900 45.455 0.00 0.00 0.00 3.28
3144 3195 1.679153 GTCCGAAAAAGCTTGTCCCAA 59.321 47.619 0.00 0.00 0.00 4.12
3145 3196 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
3146 3197 1.266989 CTGTCCGAAAAAGCTTGTCCC 59.733 52.381 0.00 0.00 0.00 4.46
3147 3198 2.218603 TCTGTCCGAAAAAGCTTGTCC 58.781 47.619 0.00 0.00 0.00 4.02
3148 3199 2.224314 CCTCTGTCCGAAAAAGCTTGTC 59.776 50.000 0.00 0.00 0.00 3.18
3149 3200 2.222027 CCTCTGTCCGAAAAAGCTTGT 58.778 47.619 0.00 0.00 0.00 3.16
3150 3201 1.537202 CCCTCTGTCCGAAAAAGCTTG 59.463 52.381 0.00 0.00 0.00 4.01
3151 3202 1.420138 TCCCTCTGTCCGAAAAAGCTT 59.580 47.619 0.00 0.00 0.00 3.74
3152 3203 1.002544 CTCCCTCTGTCCGAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
3153 3204 1.270893 ACTCCCTCTGTCCGAAAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
3154 3205 2.841442 ACTCCCTCTGTCCGAAAAAG 57.159 50.000 0.00 0.00 0.00 2.27
3155 3206 3.236896 ACTACTCCCTCTGTCCGAAAAA 58.763 45.455 0.00 0.00 0.00 1.94
3156 3207 2.885616 ACTACTCCCTCTGTCCGAAAA 58.114 47.619 0.00 0.00 0.00 2.29
3157 3208 2.599408 ACTACTCCCTCTGTCCGAAA 57.401 50.000 0.00 0.00 0.00 3.46
3158 3209 2.561419 CAAACTACTCCCTCTGTCCGAA 59.439 50.000 0.00 0.00 0.00 4.30
3159 3210 2.168496 CAAACTACTCCCTCTGTCCGA 58.832 52.381 0.00 0.00 0.00 4.55
3160 3211 1.893801 ACAAACTACTCCCTCTGTCCG 59.106 52.381 0.00 0.00 0.00 4.79
3161 3212 4.082136 CAGTACAAACTACTCCCTCTGTCC 60.082 50.000 0.00 0.00 33.48 4.02
3162 3213 4.082136 CCAGTACAAACTACTCCCTCTGTC 60.082 50.000 0.00 0.00 33.48 3.51
3163 3214 3.833070 CCAGTACAAACTACTCCCTCTGT 59.167 47.826 0.00 0.00 33.48 3.41
3164 3215 3.195825 CCCAGTACAAACTACTCCCTCTG 59.804 52.174 0.00 0.00 33.48 3.35
3165 3216 3.181409 ACCCAGTACAAACTACTCCCTCT 60.181 47.826 0.00 0.00 33.48 3.69
3166 3217 3.171528 ACCCAGTACAAACTACTCCCTC 58.828 50.000 0.00 0.00 33.48 4.30
3167 3218 3.271153 ACCCAGTACAAACTACTCCCT 57.729 47.619 0.00 0.00 33.48 4.20
3168 3219 3.834231 TGTACCCAGTACAAACTACTCCC 59.166 47.826 5.14 0.00 44.56 4.30
3252 3303 6.912591 GCCCATATTATTATGCGAAAGTATGC 59.087 38.462 0.00 0.00 36.93 3.14
3253 3304 7.984391 TGCCCATATTATTATGCGAAAGTATG 58.016 34.615 0.00 0.00 36.93 2.39
3293 3344 9.325198 TGAGCTGTATTCGTCATTATATTTTGT 57.675 29.630 0.00 0.00 0.00 2.83
3299 3350 9.710900 ATGAAATGAGCTGTATTCGTCATTATA 57.289 29.630 0.00 0.00 38.42 0.98
3300 3351 8.613060 ATGAAATGAGCTGTATTCGTCATTAT 57.387 30.769 0.00 0.00 38.42 1.28
3301 3352 9.710900 ATATGAAATGAGCTGTATTCGTCATTA 57.289 29.630 0.00 0.00 38.42 1.90
3302 3353 6.932356 ATGAAATGAGCTGTATTCGTCATT 57.068 33.333 0.00 0.00 40.55 2.57
3303 3354 7.118825 CCATATGAAATGAGCTGTATTCGTCAT 59.881 37.037 3.65 2.17 0.00 3.06
3304 3355 6.424812 CCATATGAAATGAGCTGTATTCGTCA 59.575 38.462 3.65 0.00 0.00 4.35
3305 3356 6.425114 ACCATATGAAATGAGCTGTATTCGTC 59.575 38.462 3.65 0.00 0.00 4.20
3306 3357 6.291377 ACCATATGAAATGAGCTGTATTCGT 58.709 36.000 3.65 0.00 0.00 3.85
3307 3358 6.791887 ACCATATGAAATGAGCTGTATTCG 57.208 37.500 3.65 0.00 0.00 3.34
3308 3359 8.623903 TCAAACCATATGAAATGAGCTGTATTC 58.376 33.333 3.65 0.00 0.00 1.75
3309 3360 8.523915 TCAAACCATATGAAATGAGCTGTATT 57.476 30.769 3.65 0.00 0.00 1.89
3310 3361 8.701908 ATCAAACCATATGAAATGAGCTGTAT 57.298 30.769 3.65 0.00 0.00 2.29
3311 3362 9.056005 GTATCAAACCATATGAAATGAGCTGTA 57.944 33.333 3.65 0.00 0.00 2.74
3312 3363 7.776969 AGTATCAAACCATATGAAATGAGCTGT 59.223 33.333 3.65 0.00 0.00 4.40
3313 3364 8.162878 AGTATCAAACCATATGAAATGAGCTG 57.837 34.615 3.65 0.00 0.00 4.24
3345 3396 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3346 3397 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3347 3398 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3373 3424 9.314321 CGTATGTAGTTTGTAATGGAATCTCTT 57.686 33.333 0.00 0.00 0.00 2.85
3374 3425 7.926555 CCGTATGTAGTTTGTAATGGAATCTCT 59.073 37.037 0.00 0.00 0.00 3.10
3375 3426 7.924412 TCCGTATGTAGTTTGTAATGGAATCTC 59.076 37.037 0.00 0.00 0.00 2.75
3376 3427 7.788026 TCCGTATGTAGTTTGTAATGGAATCT 58.212 34.615 0.00 0.00 0.00 2.40
3377 3428 8.603242 ATCCGTATGTAGTTTGTAATGGAATC 57.397 34.615 0.00 0.00 0.00 2.52
3411 3462 9.778741 TGAGTGAATCTAAAGTCTAAAACATGT 57.221 29.630 0.00 0.00 0.00 3.21
3418 3469 9.507329 AGCAAAATGAGTGAATCTAAAGTCTAA 57.493 29.630 0.00 0.00 0.00 2.10
3419 3470 9.155975 GAGCAAAATGAGTGAATCTAAAGTCTA 57.844 33.333 0.00 0.00 0.00 2.59
3420 3471 7.120432 GGAGCAAAATGAGTGAATCTAAAGTCT 59.880 37.037 0.00 0.00 0.00 3.24
3421 3472 7.247019 GGAGCAAAATGAGTGAATCTAAAGTC 58.753 38.462 0.00 0.00 0.00 3.01
3422 3473 6.128172 CGGAGCAAAATGAGTGAATCTAAAGT 60.128 38.462 0.00 0.00 0.00 2.66
3423 3474 6.128172 ACGGAGCAAAATGAGTGAATCTAAAG 60.128 38.462 0.00 0.00 0.00 1.85
3424 3475 5.705441 ACGGAGCAAAATGAGTGAATCTAAA 59.295 36.000 0.00 0.00 0.00 1.85
3425 3476 5.245531 ACGGAGCAAAATGAGTGAATCTAA 58.754 37.500 0.00 0.00 0.00 2.10
3426 3477 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3427 3478 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3428 3479 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3429 3480 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3430 3481 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3431 3482 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3432 3483 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3433 3484 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3434 3485 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3435 3486 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3436 3487 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3437 3488 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3438 3489 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3439 3490 3.431626 CCATGGACTACATACGGAGCAAA 60.432 47.826 5.56 0.00 37.84 3.68
3440 3491 2.102420 CCATGGACTACATACGGAGCAA 59.898 50.000 5.56 0.00 37.84 3.91
3441 3492 1.686587 CCATGGACTACATACGGAGCA 59.313 52.381 5.56 0.00 37.84 4.26
3442 3493 1.687123 ACCATGGACTACATACGGAGC 59.313 52.381 21.47 0.00 37.84 4.70
3443 3494 2.035961 CCACCATGGACTACATACGGAG 59.964 54.545 21.47 0.00 40.96 4.63
3444 3495 2.036387 CCACCATGGACTACATACGGA 58.964 52.381 21.47 0.00 40.96 4.69
3445 3496 2.036387 TCCACCATGGACTACATACGG 58.964 52.381 21.47 4.36 42.67 4.02
3453 3504 7.202047 GTCTATTTAGAGATTCCACCATGGACT 60.202 40.741 21.47 7.34 38.56 3.85
3454 3505 6.931840 GTCTATTTAGAGATTCCACCATGGAC 59.068 42.308 21.47 2.42 38.56 4.02
3455 3506 6.846505 AGTCTATTTAGAGATTCCACCATGGA 59.153 38.462 21.47 0.00 37.65 3.41
3456 3507 7.072263 AGTCTATTTAGAGATTCCACCATGG 57.928 40.000 11.19 11.19 33.87 3.66
3466 3517 9.984590 GGAGGGAGTATAAGTCTATTTAGAGAT 57.015 37.037 0.00 0.00 32.01 2.75
3467 3518 8.102047 CGGAGGGAGTATAAGTCTATTTAGAGA 58.898 40.741 0.00 0.00 32.01 3.10
3468 3519 7.884354 ACGGAGGGAGTATAAGTCTATTTAGAG 59.116 40.741 0.00 0.00 32.01 2.43
3469 3520 7.753630 ACGGAGGGAGTATAAGTCTATTTAGA 58.246 38.462 0.00 0.00 0.00 2.10
3470 3521 7.999450 ACGGAGGGAGTATAAGTCTATTTAG 57.001 40.000 0.00 0.00 0.00 1.85
3471 3522 7.449704 GGAACGGAGGGAGTATAAGTCTATTTA 59.550 40.741 0.00 0.00 0.00 1.40
3472 3523 6.267242 GGAACGGAGGGAGTATAAGTCTATTT 59.733 42.308 0.00 0.00 0.00 1.40
3473 3524 5.774184 GGAACGGAGGGAGTATAAGTCTATT 59.226 44.000 0.00 0.00 0.00 1.73
3474 3525 5.074790 AGGAACGGAGGGAGTATAAGTCTAT 59.925 44.000 0.00 0.00 0.00 1.98
3475 3526 4.414846 AGGAACGGAGGGAGTATAAGTCTA 59.585 45.833 0.00 0.00 0.00 2.59
3476 3527 3.204831 AGGAACGGAGGGAGTATAAGTCT 59.795 47.826 0.00 0.00 0.00 3.24
3477 3528 3.564264 AGGAACGGAGGGAGTATAAGTC 58.436 50.000 0.00 0.00 0.00 3.01
3478 3529 3.684408 AGGAACGGAGGGAGTATAAGT 57.316 47.619 0.00 0.00 0.00 2.24
3479 3530 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3480 3531 7.068702 TGTATTTAGGAACGGAGGGAGTATAA 58.931 38.462 0.00 0.00 0.00 0.98
3481 3532 6.613699 TGTATTTAGGAACGGAGGGAGTATA 58.386 40.000 0.00 0.00 0.00 1.47
3482 3533 5.461327 TGTATTTAGGAACGGAGGGAGTAT 58.539 41.667 0.00 0.00 0.00 2.12
3483 3534 4.870636 TGTATTTAGGAACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
3484 3535 3.716431 TGTATTTAGGAACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
3485 3536 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3486 3537 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3487 3538 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3488 3539 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3489 3540 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3490 3541 9.211485 CTAAAAAGACTTGTATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
3491 3542 9.211485 TCTAAAAAGACTTGTATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
3502 3553 9.924650 GTAGTGGAATCTCTAAAAAGACTTGTA 57.075 33.333 0.00 0.00 0.00 2.41
3503 3554 8.429641 TGTAGTGGAATCTCTAAAAAGACTTGT 58.570 33.333 0.00 0.00 0.00 3.16
3504 3555 8.833231 TGTAGTGGAATCTCTAAAAAGACTTG 57.167 34.615 0.00 0.00 0.00 3.16
3505 3556 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
3506 3557 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
3507 3558 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
3514 3565 8.618677 CGTATGTAGTTTGTAGTGGAATCTCTA 58.381 37.037 0.00 0.00 0.00 2.43
3515 3566 7.416438 CCGTATGTAGTTTGTAGTGGAATCTCT 60.416 40.741 0.00 0.00 0.00 3.10
3516 3567 6.696148 CCGTATGTAGTTTGTAGTGGAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
3517 3568 6.379133 TCCGTATGTAGTTTGTAGTGGAATCT 59.621 38.462 0.00 0.00 0.00 2.40
3518 3569 6.567050 TCCGTATGTAGTTTGTAGTGGAATC 58.433 40.000 0.00 0.00 0.00 2.52
3519 3570 6.534475 TCCGTATGTAGTTTGTAGTGGAAT 57.466 37.500 0.00 0.00 0.00 3.01
3520 3571 5.981088 TCCGTATGTAGTTTGTAGTGGAA 57.019 39.130 0.00 0.00 0.00 3.53
3521 3572 5.419788 ACATCCGTATGTAGTTTGTAGTGGA 59.580 40.000 0.00 0.00 44.66 4.02
3522 3573 5.657474 ACATCCGTATGTAGTTTGTAGTGG 58.343 41.667 0.00 0.00 44.66 4.00
3550 3601 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
3564 3615 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
3565 3616 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
3566 3617 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
3567 3618 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
3568 3619 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
3569 3620 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
3570 3621 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
3571 3622 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3572 3623 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3573 3624 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3574 3625 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3575 3626 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
3576 3627 5.339008 AGACTACATACGGAGCAAAATGA 57.661 39.130 0.00 0.00 0.00 2.57
3577 3628 8.812147 TTATAGACTACATACGGAGCAAAATG 57.188 34.615 0.00 0.00 0.00 2.32
3578 3629 9.424319 CATTATAGACTACATACGGAGCAAAAT 57.576 33.333 0.00 0.00 0.00 1.82
3579 3630 7.870954 CCATTATAGACTACATACGGAGCAAAA 59.129 37.037 0.00 0.00 0.00 2.44
3580 3631 7.231925 TCCATTATAGACTACATACGGAGCAAA 59.768 37.037 0.00 0.00 0.00 3.68
3581 3632 6.717997 TCCATTATAGACTACATACGGAGCAA 59.282 38.462 0.00 0.00 0.00 3.91
3582 3633 6.243148 TCCATTATAGACTACATACGGAGCA 58.757 40.000 0.00 0.00 0.00 4.26
3583 3634 6.754702 TCCATTATAGACTACATACGGAGC 57.245 41.667 0.00 0.00 0.00 4.70
3584 3635 9.179909 AGATTCCATTATAGACTACATACGGAG 57.820 37.037 0.00 0.00 0.00 4.63
3585 3636 9.175312 GAGATTCCATTATAGACTACATACGGA 57.825 37.037 0.00 0.00 0.00 4.69
3586 3637 9.179909 AGAGATTCCATTATAGACTACATACGG 57.820 37.037 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.