>input_sequence_47056
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGCAAC
TCGCCGCCCGAACCTCTCGT--------TCCTCGATGTTGCGCAGGGTCCTCGCCGGAGCGATCGCGCGCCTCTCCGGCC
CCGGATTCTCCAACCCACCGCCGAGGAGACGGCCTCTCCTCCCGCCCAACGCCCCGCGCCTCTCCACCGCGCGGGTGCCG
TCCGGCGGCGGCGAGGGCAGCGAGGGGGAGGATGACGACGACCCGTTCTCCTTCCCGGACCAGCAGCAGCTCCCGCCGGA
CGTGGCGCGCGGCGTGGACGCCGTCGTCGCGGCGGCCGAGGGCGCCCACCTGGACGCCGCGCGCGCCGGGGCGCTCCTGG
AGCAATGCGGCGCCGCGGCCTCGGAGACGCTCGTGGTGGCCGCGCTCTCGCGCCTCCGCAACAGCTGGGCCGCCGCGCAC
GCCGCATTCCGGTGGGCCGCCGCGCGGGGGCGGCCGCAGCCCGGGTACGCCCCCGGGCGCCACGCGTGCCACTCCATGCT
CGCCATCCTCGCCAGGCACCGCCGCTTCGACGACGCGCGCGCCCTGCTCGACGAAATGCGCCGCAGGTCGCTCGCGTCGC
CGAGGGCGGTGCTCCTCCTAATCCGGCGCTACTGCGCCGCGCGGGACGTTGCTAGCGCGATCGCCGCGTTCCGCGCACTC
CCGAGCTTCGGCATTGAGCCCGGGGTCGTCCAGTTCCATGGCCTCCTCGGCGCCCTCTGCCGGTACAAGAACGTCAAGGA
CGCGGAGCACCTGCTTCTGTCCAGCGAGAGGGAGTTCCCGTTCGAGACCAAGGGCTTCAACATCGTGCTCAACGGCTGGT
GCAACATGGTCTGCAGCGTGCGGGAGGCCAAGAGGTTTTGGACCGTCATGGAGCTCAGGGGTGTCGCGAGGGACGTTGTG
TCTTATGGGAGTATGATCTCGTGCTTCTCGAAGGCTGGGAGCTTGGATTCGGTCATGAAGCTCTTTAACCGCATGAAGGA
GGCCGGCATCGTGCCAGACCGGAAGGTGTACAATGCAGTTGTGCACGCGCTCGCTAAGGGACGGTGTGTGGACGAGGCAA
GGGCTCTTGTCCGGAGCATGGAGGAGAAGGGGGTTACACCGGACACGGCCACTTACAACTCCCTCATTCGGCCTCTTTGC
AAGGCTCGTCAGGTCCAGGAGGCAAGGGAGATGTTTGATGAGATGGTAGGAAGGGGGCTGTTGGCATCAGTGAGGACATT
CCATGCATTGTTCGATGTTGCTACGAGCCCCACTGAGGTCTTTGATCTGTTGGATAAGATGAAGACACTGCATTGCGAGC
CAGAGATGGACACTTATATTATGTTGATCCGGAAGTTCTGCAGGTGGAAGCAGCACGACAGTGTGGAGAAACTGTGGAAC
GCAATGCCTGCAAACGGGCTGACCCCTGATCGGAGTGCGTACATTGTGTTCATACATGGATTGTTCCTGAATGGGAAGCT
AGAGGAAGCTGCAAAGTATTATGAGGAGATGAAAGCCAAGGGATTTTCACCTGAGGAGAAGACTGAATCAATGATACAGG
CGTGGCGTTCAGGCAGAGAGCTCGCCAAGGCGTCAGCTTCTGCCGGTTCAAGAAGTGGTTCGGTGTCTCTCAAAGTAACT
CGTAGAGAGTGGTAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr3D_1_TraesCS3D01G333000
AGCCGTGCAATGTCTCGCCCAAAAGAATCCTTCCAATATTAGATACCGCAGGCACAACCGCTAACACGGTTATCTCGCTT
GGATCAATGCCTTCTGCCATCATGCGGCGAAAGAGAGCAACGGCCTCTACCGAGCGGCAGGAGCGCGTGTACCCATCAAT
CATCCCGGTCCACGAGACAATATTCCTACAGGGCATCCGCTCAAAGAGCAGCCTGGCGTACTCAACCTCGCCCCGCGCAG
CAAACCCGGTGATCATCACGTTCCAAGTAACCGCATTCTTCGCCGGCATCTCGTCGAACGCACCACGAGATTCCGCCAGG
CACCCGCACACAACATAGGCGTTGACCAGGGCGGTGTGCACATAGGCGTGGAACTCGAACCCCTTGCGGACGGCAAGCCC
GTGCAGCTGCGCGGCAGCCCGCGGCCACGCCAGGGCCGCGCAGGCCCCAAGGGCGTGCACGAAGGCGTAGGTGTCGTCGG
CCGCGTGCCGGCGTGCGTCCCTGAAGAGGCTCAGGGCCTCCTGCGGGAGAGGGCCGCGGGAGTAGGCCTTGAGGAGCGCG
TGCCACGGCGTGGGCCGCCGGTCGAACACCTGGCGGGCAACGAGCTGGGCGTGGATCTGGAGGAGCGGGCGCCTCTCCGC
CTGGTGCCTCAGGAGGAGGGCGACCAGGCCCCGGGCGTGGGCGGCGGCGGCGGCGGCATGGAAGGGCGCGCATCCCTGCC
TCAGGAGGTCAGCCGGGAACCGCGCCATGAGGGGGGCTCCGTCTTCTGCAGCCCTA----CCCAACGCCTCTCTCGTCTA
CTTAGAAT----ATGTCATGGTGCAATG------------------GAGAGAGAGAGAGAGAGAGAGAGAGAGGCATTAC
CTTGTCTGGAGAGAAGAG--------GTGGAGGAGGCTGGACTCGAAATCGTCCGAGGCTTTCTCCCTCCCGCGCCGGCG
TCCAAGACAAAAAGATTGTGTTTTTGCTTTCCCTTCCCGGGCGTACTACATTGCTCTGTTGACAGTTGACACGAGGCAAC
TCGCCGCCCGAACCTCTCGT--------TCCTCGATGTTGCGCAGGGTCCTCGCCGGAGCGATCGCGCGCCTCTCCGGCC
CCGGATTCTCCAACCCACCGCCGAGGAGACGGCCTCTCCTCCCGCCCAACGCCCCGCGCCTCTCCACCGCGCGGGTGCCG
TCCGGCGGCGGCGAGGGCAGCGAGGGGGAGGATGACGACGACCCGTTCTCCTTCCCGGACCAGCAGCAGCTCCCGCCGGA
CGTGGCGCGCGGCGTGGACGCCGTCGTCGCGGCGGCCGAGGGCGCCCACCTGGACGCCGCGCGCGCCGGGGCGCTCCTGG
AGCAATGCGGCGCCGCGGCCTCGGAGACGCTCGTGGTGGCCGCGCTCTCGCGCCTCCGCAACAGCTGGGCCGCCGCGCAC
GCCGCATTCCGGTGGGCCGCCGCGCGGGGGCGGCCGCAGCCCGGGTACGCCCCCGGGCGCCACGCGTGCCACTCCATGCT
CGCCATCCTCGCCAGGCACCGCCGCTTCGACGACGCGCGCGCCCTGCTCGACGAAATGCGCCGCAGGTCGCTCGCGTCGC
CGAGGGCGGTGCTCCTCCTAATCCGGCGCTACTGCGCCGCGCGGGACGTTGCTAGCGCGATCGCCGCGTTCCGCGCACTC
CCGAGCTTCGGCATTGAGCCCGGGGTCGTCCAGTTCCATGGCCTCCTCGGCGCCCTCTGCCGGTACAAGAACGTCAAGGA
CGCGGAGCACCTGCTTCTGTCCAGCGAGAGGGAGTTCCCGTTCGAGACCAAGGGCTTCAACATCGTGCTCAACGGCTGGT
GCAACATGGTCTGCAGCGTGCGGGAGGCCAAGAGGTTTTGGACCGTCATGGAGCTCAGGGGTGTCGCGAGGGACGTTGTG
TCTTATGGGAGTATGATCTCGTGCTTCTCGAAGGCTGGGAGCTTGGATTCGGTCATGAAGCTCTTTAACCGCATGAAGGA
GGCCGGCATCGTGCCAGACCGGAAGGTGTACAATGCAGTTGTGCACGCGCTCGCTAAGGGACGGTGTGTGGACGAGGCAA
GGGCTCTTGTCCGGAGCATGGAGGAGAAGGGGGTTACACCGGACACGGCCACTTACAACTCCCTCATTCGGCCTCTTTGC
AAGGCTCGTCAGGTCCAGGAGGCAAGGGAGATGTTTGATGAGATGGTAGGAAGGGGGCTGTTGGCATCAGTGAGGACATT
CCATGCATTGTTCGATGTTGCTACGAGCCCCACTGAGGTCTTTGATCTGTTGGATAAGATGAAGACACTGCATTGCGAGC
CAGAGATGGACACTTATATTATGTTGATCCGGAAGTTCTGCAGGTGGAAGCAGCACGACAGTGTGGAGAAACTGTGGAAC
GCAATGCCTGCAAACGGGCTGACCCCTGATCGGAGTGCGTACATTGTGTTCATACATGGATTGTTCCTGAATGGGAAGCT
AGAGGAAGCTGCAAAGTATTATGAGGAGATGAAAGCCAAGGGATTTTCACCTGAGGAGAAGACTGAATCAATGATACAGG
CGTGGCGTTCAGGCAGAGAGCTCGCCAAGGCGTCAGCTTCTGCCGGTTCAAGAAGTGGTTCGGTGTCTCTCAAAGTAACT
CGTAGAGAGTGGTAAAGATGAAGACCACTTGGAAGTGATCTATAGAAACAGACATGGGTGTCGTTTTGGAGTAACTGGT-
-AAACTTTGGAGAGAGATTATTTGGTTATTCCTAAAGATGAGTCTGATTACCCTTGAGTGATCTTCATCTACGTTGTTGT
GGCCGGTTTGGTCAAGGAAGCCACGCTTGCAAGGGCCCTGACTTTCGTTAAGAG---TTGTCAGCCATGACCTCAGCTGA
GGGTATGCTGTTCGGTTTCCTTTGTTCAAGTCTGTA-TCAAACTTTCTTCCTTCTAAT-AGAATGGGCAGAGCT-CTGCC
GTATTCGAAAGTAGTATGTTTGCCCAGTTATTTTCATTCTCACTAGATTGCTTGGTTGTAGGTTGGAATTAGAAAGTGCA
AACTATGGTTTATCCTGTTTAAACTTGGATAGGCATCACTTTGCTGTAACCCTTCTTTTGTAGCTCATACTCCCTCCGTC
CGAAAAAGCTTGTCCCTCAAATGGATGTATCTAGCACCAAGTTAGTGCTAGATACATCCATTTGAGGGACAAGTTTGGGA
CAAGCTTTTTCGGACAGAGGGAGTAGTTTGTACTGGGTACATGTTCAATGATTGGTTCACAACATATAATGACTGTCCAC
CATATTCATACTGGTCCGACTCGCATACTTTCGCATAATAATATGGGCAGATATTTTAGCTTTACAAAATATAATGACGA
ATACAGCTCATTTCATATGGTTTGATACTAAATACTCCCTCCGTTCCTAAATATAAGTCTTTTAAGAGATTCCATTACAA
ACTACATACGGATATATATAGACATGTTTTAGACTTTAGATTCACTCATTTTGCTCCGTATGTAGTCCATGGTGGAATCT
CTAAATAGACTTATACTCCCTCCGTTCCTAAATACAAGTCTTTTTAGAGATTCCACTACAAACTACATACGGATGTATAT
AGACATATTTTAGAGTGTAGGTTCACTCATTTTGCTCCGTATGTAGTCTATAATGGAATCTCT
>chr3A_1
AGCCGTGCAAGGCCTCGCCCAAAAGAATCCTTCCAATATTTGATACCGCAGGTACAACCGCTAAAACAGTTATCTCGCTT
GGATCAACGCCTTCAGCCATCATGCGGCGAAAGAGAGCAACGGCCTCCACAGACCGACAGGAGCGTGTGTACCCATCAAT
CATCCCGGTCCACGAGACAACATTCCTACAGGGCATCCGCTCAAAGAGCAGCCTCGCGTACTCAACCTCGCCCCGCGCAG
CAAACCCGGTGATCACCACGTTCCAAGTAACCGCATTCTTCGCCGGCATCTCCTCGAACGCAATCCGAGCATCCGCCAGG
CACCCGCACACGACATATGCGTTGACAAGGGCGGTATGCACGTAGGCGTGGATCTCGAACCCCTTGCGGACGGCGAGCCC
GTGCAGCTGCGCGCCGGCCCGCGGCCACGCCAGGGCCGCGCAGGCCCCGAGGGCGTGCACGAAGGCGTAGGTGTCGTCGG
CCGCGTGCCGGCGCGCGTCCCTGAAGAGGCTCAGGGCCTCCTGGGGGAGAGGGCCGCGGGAGTAGGCCTTGAGGAGCGCG
TGCCAGGGCGTGGGACGGCGATCGAACACCTGGCGGGCAACGAGCTGGGCGTGGATCTGGAGGAGCGGGCGCCTCTCCGC
CTGGTGCCTCAGGAGGAGGGCGACCAGGCCCCGGACGTGGGCGGCGGCGGCGTCG---TGGGAGGGCGCGCAGCCCTGCC
GCAAGAGGTCAGCCGGGAACCGCGCCATGAGGGGGGCTCCGTCTTCTCCAGCCCTA----CC-AACGCCTCTCTCGTCTA
CTTAGAAT----ATGTCATGGTGCAATGGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCATTAC
CTTGTCTG--GAGAGAAG--------GTGGAGGAGGCTCGACTCGAAATCGTCCTAGGCTTTCTCCCTCCCGCGCCGGCG
TCCAGGACAAAAAGAATGTGCTTTTGCTTGCGCTTCCCGGGCGGACCACGTTGCTCTGTTGACAGTTGACACGAGGCAAC
TCGCCGCCCGATCCTCACTCGTCGCTCCTCCTCGATGTTGCGCAGGGTCCTCGCCGGAGCGATCACGCGCCTCTCCGGCC
CCGGATTCTCCAGCCCACCGCCGAGGAGACGGCCTCTCCTCCCGCCCAACGCCCCGCGCCTCTCCACCGCGCGGGTGCCG
TCCGGCGGCGGCGAGGGCAGCGAGGGGGAGGATGACGACGACCCGTTCTCCTTCCCGGACCAGCAGCAGCTCCCGCCGGA
CGTGGCGCGGGGCGTGGACGCCGTCGTCGCGGCGGCCGAGGGCGCCCACTTGGACGCCGCGCGCGCCGGGGCCCTCCTGG
AGCAATGCGGCGCCGCGGCTTCCGAGACGCTCGTGGTGGCCGCGCTCTCGCGCCTCCGCAACAGCTGGGCCGCCGCGCAC
GCCGCGTTCCGGTGGGCGGCCTCGCGGGGGCGGCCGCAGCCCGGGTACGCCCCGGGGCGCCACGCGTGCCACTCCATGCT
CGCCATCCTCGCCAGGCACCACCGCTTCGACGACGCCCGCGCCCTGCTCGACGAAATGCGCCGCAGGTCGCTCGCGTCGC
CGAGGGCGGTGCTCCTCCTAATCCGGCGCTACTGCGCCGCGCGTGACGTTGCTAGCGCGATCGCCGCGTTCCGCTCGCTC
CCGAGCTTCGGCATTGAGCCCGGGGTCACCCAGTTCCATGGCCTCCTCAGCGCCCTCTGCCGGTACAAGAACGTCAAGGA
CGCGGAGCACCTGCTTCTGTCGAGCGGGAAGGAGTTCCCGTTCGAGACCAAGGGCTTCAACATCGTGCTCAACGGCTGGT
GCAACATGGTCTGCAGCACGCGGGAGGCCAAGAGGTTTTGGGTCGTCATGGAGCTCAGGGGCATCGCGAGGGACGTTGTG
TCTTATGGGAGCATGATCTCGTGCTTCTCGAAGGCCGGGAGCTTGGACTCGGTCATGAAGCTCTTTAACCGCATGAAGGA
GGCTGGCATTGTGCCTGACCGGAAGGTGTACAATGCAGTTGTGCACGCGCTCGCCAAGGGACGGTGCGTGGATGAGGCAA
GAGCGCTCGTCCGGAGTATGGAGGAGAAGGGGGTTGCACCAGACACGGCCACTTACAACTCCCTCATTCGGCCTCTTTGC
AAGGCTCGTCAGGTCCAGGAGGCAAGGGAGATGTTTGATGAGATGGTAGGAAGGGGGCTGTTGGCATCGGTGAGGACATT
CCATGCATTGTTCGATGTTGCTACAAGCCCCACTGAGGTCTTTGATCTGTTGGACAAGATGAAGGCACTACATTGCAAGC
CAGAGATGGACACTTATATTATGTTGATCCGGAAGTTCTGCAGGTGGAAGCAGCACGACAGTGTGGAGAAACTGTGGAAC
GCAATGCCTGCAAACGGACTGACCCCTGATCGGAGTGCATACATCGTGTTCATACATGGATTGTTCCTGAATGGGAAGCT
AGAGGAGGCTGCAAAGTATTTTGAGGAGATGAAAGTCAAGGGATTTTCACCAGAGGAGAAGACTGAATCAATGATACAGG
CGTGGCGTTCAGGCAGAGAGCTTGCCAAGGCATCGGCTTCTGTCGGTTCAAAACATGGTTCTGTGTCTCTCAAAGTAACT
CGTAGAGAGTGGTAAAGATGAAGAGCACTTGAAAGTGATCTATAGAAAGAAACACAGCTGTTGTTTTCGAGTAACTGCTA
GACACT--GGAGAGAGATTATTTGGTTATTCAGAAAGATGAGTCTGATTACTTTCAAGTGATCTTCATCTACTTTGTTGT
GGTTGGTTTGGTCAAGGAAGCCACGCTCGCAAGGGCCCTTGCTTTCGTTA-GAGTTATTGTCAGCGATGACCTCAGCTGA
GGGTATGCTGTTTGGTTTCCTTTGTTCCAGTCTGTAATCAAACTTTGTTCCTTCTAACAAGAAGGCGCAGAGCTCCTACC
GTATTTGAAAAGAGTATGTTTACCCAGTTATTTTCGTTCTCACTAGATTGCTTGGCTGTAGATTGGAATTAGAAAGTGCA
ACCTAGGGTTTGTCCTTTTGAAACTTGGATAGGCATCACTTTGCTATGACCCTTCTTTTGTAGCTCA-------------
--------------------------------------------------------------------------------
-----------------------TAGTTTGTACTGGGTACATGTTCAATGATTGGTTCACAACATATAATGACTGTCCAC
TATATTCATACTGGTCCGACTCCTATACTTTCACATAATAATATGTGCAGAGATTTTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr3B_1
AGCCGTGCAAGGCCTCACCCAAAAGAATCCTTCCAATATTAGATACCGCAGGTACAACCGCTAACACAGTTATCTCGCTT
GGATCAACACCTTCTGCCATCATGCGGCGAAAGAGAGCAATGGCCTCTACCGAGCGACAGGAGCGCGTGTACCCATCAAT
CATCCCGGTCCACGAGACAACATTCCTACAGGGCATCCGCTCAAAAAGCAGCCTCGCGTACTCAACCTCGCCCCGCGCAG
CAAACCCGGTGATCACCACGTTCCAAGTAACCGCATTCTTGGCCGGCATCTCGTCGAACGCGATCCGAGCATTCGCCAGG
CACCCGCACACGACATAGGCATTGACGAGGGCGGTGTGCACGTAGGCGTGGAACTCGAACCCCTTCCGGACGGCAAGCCC
GTGCAGCTGCACGGCAGCCCGCGGCCACGCCAGGGCCGCGCAGGCCCCGAGGGCGTGCACGAAGGCGTAGGTGTTGTCGG
CCGCGTGCCGCCGCGCGTCCCTGAAGAGGCTCAGTGCCTCCTGCGGGAGAGGGCCGCGGGAGTAGGCCTTGAGGAGCGCG
TGCCACGGCGTGGGACGGCGGTCGAACACCTGGCGGGCAACGAGCTGGGCGTGGATCTGGAGGAGCGGGCGCCTCTCCGC
CTGGTATCTCAGGAGGAGGGCCACCAGGCCCCGGACGTGGGCGGCGGCGGCGTCG---TGGGAGGGCGCGCATCCCTGCC
TCCAGAGGTCAGCCGGGAACCGCGCCATGAGGGG--CTCCGTCTCCTCCAGACCTACTACCC-AACGCCTCTCTCGTCTG
CTTAGAATTATTATGTCATGGTGCAATGGAGAGAGATAGAGAGAGAGG--------------------GAGAGGCATACC
CTTGTCTA--GCGAGAAGGTGGAGCAGTGGAGGAGGCTGGACTCGAAATCGTCCGAGGCTTTCTCCCTCCCGCGCCGGCG
TCCAAGACAAAAAGATTGTG-TTTTGCTTGCCCTTGCCGGGCGTACTACGTTGCTCTCTTG-------------------
-----------TCCTCACTCCTCGCTCCTCCTCCATGTTGCGTAGGGTTCTCGCGGGAGCGATCGTGCGCCTCTCCGGCC
CCGGATTCTCCAACCCGCCACCGAGGAGTCGGCCTGTCCTTCTGCCCATTGCCCCGCGCCTTTCCACCGCGCGGGAGCCG
GCCGGCGGCGAG------AGCGAGGGGGAGGAG---GACGACCCGTTCTCCTTCCCGGACCAGCAGCAGCTCCCGCCCGA
CGTGGCGCGGGGCGTGGACGCCGTCGTCGCGGCGGCCGAGGGCGCCCACCTGGACGCCGCGCGCGCCGGGGCCCTCCTGG
AGCAATGCGGCGCCGCGGCCTCCGAGACGCTCGTGGTGGCCGCGCTCTCGCGCCTCCGCAACAGCTGGGCCGCCGCGCAC
GCCGCGTTCCGGTGGGCGGCCGCGCGGGCGCGGCAGCAGCCCGGGTACGCCCCCGGGCGCCACGCGTGCCACTCCATGCT
CGCCATCCTCGCCAGGCACCGCCGCTTCGACGACGCGCGCGCCCTGCTCGACGAAATGCGCCGCAGGTCGCTCGCGTCGC
CGAGGGCGGTGCTCCTCCTAATCCGGCGATACTGCGCCGCGCGAGACGTTGCTAGCGCGATCGCCGCGTTCCGCGCGCTC
CCGAGCTTCGGCATTGAGCCTGGGGTCGCCCAGTTCCATGGCCTCCTCAGCGCCCTCTGCCGGTACAAGAACGTCAAGGA
CGCGGAGCACCTGCTTCTGTCCAGCGACAAGGAGTTCCCGTTCGAGACCAAGGGCTTCAACATCGTGCTCAATGGCTGGT
GCAACATGGTCTGCAGCGTGCGGGAGGCCAAGAGGTTTTGGACCGTCATGGAGCTCAGGGGCGTCGCGAGGGACGTTGTG
TCCTATGGGAGTATGATCTCGTGCTTCTCAAAGGCCGGGAGCTTGGATTCGGTCATGAAGCTCTTTAACCGCATGAAAGA
GGCCGGCATTGTGCCAGACCGGAAGGTGTACAATGCAGTTGTGCACGCGCTCGCCAAGGGGCGGTGTGTGGATGAGGCAA
GAGCGCTCGTCCGGAGCATGGAGGAGAAGGGGGTTGCACCAGACACGGCCACTTACAACTCCCTCATTCGGCCTCTTTGC
AAGGCTCGTCAGATCCAGGAGGCAAGAGAGATGTTTGATGAGATGGTAGGAAGGGGGCTGTTGGCATCAGTGAGGACATT
CCATGCATTGTTCGATGTTGCTACGAGCCCCACTGAGGTCTTTGATCTCTTGGATAAGATGAAGGCACTACATTGTGAGC
CAGAGATGGACACTTATATTATGTTGATCCGGAAGTTCTGCAGGTGGAAGCAGCACGACAGTGTGGAGAAACTGTGGAAC
GCAATGCCTGCAAATGGGCTGACCCCTGATCGGAGTGCGTACATTGTGTTCATACATGGACTGTTCCTGAATGGGAAGTT
AGAGGAGGCTGCAAAGTATTATGAGGAGATGAAAGCCAAGGGATTTTCACCAGAGGAGAAGACTGAATCAATGATACAGG
CGTGGCGTTCAGGCAGAGAGCTTGCCAAGGCGTCAGCTTCTGTCGGTTCAAGACGTGGTTCGGTGTCTCTCAAAGTAACT
CGTAGAGAGTGGTAAAGACGAAGACCACTTGGAAGTGGTCTATAAAGAGGGACACGGGTGTTGTTTTGGAGTAACTGGTA
GAAACTTTGGAGAGAGATTATTTGGTTATTCAGAAAGATGAGTCTGATTACCCTCAAGTGATCTTCATCTACTTTGTTCT
GGCCGGTTTGGTCAAGGAAGCCACGCGCGCAAGGGCC-TTGCTTTCGTTAAGAGTTATTGTCAGCGATGACCTCAGCTGA
GGGTATGCTGTTTGGTTTCCTTTGTTCCAGTCTGTAATCAAACTTTGTTCCTTCTAACAAGAAGGCGCAGAGCTCCTGCC
GTATTTGAAAAGAGTATGTTTACCCAGTTATTTTCGTTCTCACTAGATTGCTTGGCTGTAGATCGGAAGTAGAAAGTGCA
ACCTAGGGTTTATTCTGTTTAGACTTGGATAGGCATCACTTTGCTGTAACCCTTCTTTTGTAGCTCA-------------
--------------------------------------------------------------------------------
-----------------------TAGTTTGTACTGGGTACATGTTTGATGATTGGTTCACAACATATAATGAGTGTCCAC
CATATTCATACTGGTCCGACTCCTATACTTTCGCATTATAATATGTGCAGAGATTTTACAAAATAATGAG----------
----AGCTCATTTCATATGGTTTGATACTAAATAC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>SNPs
----------S-S---------------------------------------S--------------S------------
-------S------------------------------------------------S-----------------------
--------------------S---------------------------------S-------------------------
---------------S----------------------------------------------SSS----SS---------
-----------S--------------S--------------S--------------------------------------
------------------------------------------------S-------------------------------
-------------S------------------------------------------------------------------
--------------S--S--------------------------------------------------------------
----------------------------------S-----------------S--SSS---S------------------
---S-------------------------------------------S--------------S-----------------
--------------------------------------------------------------------------------
--------SS----SS----------------------------------------------------------------
--------------------S--------S-------------------S------------------------------
-----------S----S-SS------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S--------------------------------------------------------------S-------
----------------------S---------------------------------------------------------
-----S-----------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S--------------------------------S---
----------------------------S-------------------S-------------------------------
-----------------------------S--------------------------------------------------
-------------------------------------------------------------S------------------
-----------------------------------S--------------------------------------------
---------S--------------------------------------------S-----------------S-------
-S--S--S---------------------------S----S---------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S----S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------------------------------S----------------------------
----------------------S-------------------S----------S--------------------------
------------------------------------------------S-----S------S------------------
-------------------------------SS---------------------SS----------------S-------
---------------------------S-----------SS------------------------S--------------
------------S--------------S------------------S----------S-----S-S--------------
-----S----SS---------S-------------S-------------------S-----S------------------
-S---S-------------------------------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
----------------------SS---------------------S-----S------SSSSSSS-SS-SSSSSSSSSSS
SSSS-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_783
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTCTTCTGCAGCCCTACCC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2121
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GGACACGGCCACTTACAACT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_2073
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CTAAGGGACGGTGTGTGGAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_3116
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CCGTC
CGAAAAAGCTTGTCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
