Multiple sequence alignment - TraesCS3D01G325900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G325900 chr3D 100.000 3073 0 0 1 3073 438471664 438468592 0.000000e+00 5675
1 TraesCS3D01G325900 chr3D 82.245 490 56 13 2538 2998 601616064 601615577 7.990000e-106 394
2 TraesCS3D01G325900 chr3D 91.748 206 17 0 2536 2741 438468057 438468262 1.390000e-73 287
3 TraesCS3D01G325900 chr3D 89.474 190 20 0 2537 2726 601614756 601614945 1.100000e-59 241
4 TraesCS3D01G325900 chr3D 84.653 202 30 1 2330 2530 79555384 79555183 1.870000e-47 200
5 TraesCS3D01G325900 chr3D 84.080 201 31 1 2330 2530 481915911 481916110 3.130000e-45 193
6 TraesCS3D01G325900 chr3B 90.198 1969 113 37 361 2304 574266878 574264965 0.000000e+00 2494
7 TraesCS3D01G325900 chr3B 94.277 332 18 1 1 331 574267206 574266875 9.830000e-140 507
8 TraesCS3D01G325900 chr3A 91.353 1353 93 12 1 1345 577066877 577065541 0.000000e+00 1829
9 TraesCS3D01G325900 chr3A 90.049 824 43 23 1461 2276 577065544 577064752 0.000000e+00 1031
10 TraesCS3D01G325900 chr1D 82.892 491 53 12 2537 2998 254635971 254635483 2.200000e-111 412
11 TraesCS3D01G325900 chr1D 91.146 192 17 0 2535 2726 254634659 254634850 8.450000e-66 261
12 TraesCS3D01G325900 chr2D 82.485 491 56 13 2537 2998 73834966 73835455 1.330000e-108 403
13 TraesCS3D01G325900 chr2D 82.222 495 58 12 2533 2998 480770319 480770812 1.720000e-107 399
14 TraesCS3D01G325900 chr2D 89.806 206 20 1 2536 2741 73845029 73844825 2.350000e-66 263
15 TraesCS3D01G325900 chr2D 91.005 189 16 1 2537 2724 480771635 480771447 1.410000e-63 254
16 TraesCS3D01G325900 chr2D 84.236 203 32 0 2338 2540 72155835 72155633 6.720000e-47 198
17 TraesCS3D01G325900 chr4A 80.588 510 53 18 2537 3017 161397090 161397582 4.880000e-93 351
18 TraesCS3D01G325900 chr5B 78.622 566 69 23 2534 3068 547312164 547312708 8.220000e-86 327
19 TraesCS3D01G325900 chr5B 84.878 205 31 0 2330 2534 678906020 678906224 1.120000e-49 207
20 TraesCS3D01G325900 chr5A 83.721 215 34 1 2327 2540 563360072 563359858 5.200000e-48 202
21 TraesCS3D01G325900 chr5A 84.974 193 29 0 2338 2530 299295077 299294885 2.420000e-46 196
22 TraesCS3D01G325900 chr2A 85.492 193 28 0 2338 2530 409644266 409644074 5.200000e-48 202
23 TraesCS3D01G325900 chr2A 80.909 220 41 1 2304 2523 52051281 52051499 4.070000e-39 172
24 TraesCS3D01G325900 chr6D 85.492 193 27 1 2338 2530 454889511 454889320 1.870000e-47 200
25 TraesCS3D01G325900 chr6D 84.974 193 28 1 2338 2530 454923066 454922875 8.690000e-46 195
26 TraesCS3D01G325900 chr7A 78.761 226 34 10 2299 2521 195549417 195549631 4.130000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G325900 chr3D 438468592 438471664 3072 True 5675.0 5675 100.0000 1 3073 1 chr3D.!!$R2 3072
1 TraesCS3D01G325900 chr3B 574264965 574267206 2241 True 1500.5 2494 92.2375 1 2304 2 chr3B.!!$R1 2303
2 TraesCS3D01G325900 chr3A 577064752 577066877 2125 True 1430.0 1829 90.7010 1 2276 2 chr3A.!!$R1 2275
3 TraesCS3D01G325900 chr5B 547312164 547312708 544 False 327.0 327 78.6220 2534 3068 1 chr5B.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 351 0.387239 GCACCAACGAGGAACAATGC 60.387 55.0 5.7 1.41 41.22 3.56 F
1157 1196 0.039472 TTTGCTTCTGCCCCATGCTA 59.961 50.0 0.0 0.00 42.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1616 0.109597 CGCTGCTGGTTTTTGCTAGG 60.110 55.0 0.00 0.00 0.00 3.02 R
2458 2527 0.027194 GTCAGCATAGACGCGTCGTA 59.973 55.0 31.56 23.28 41.37 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 1.073722 CACTTTGCCCTGCCTCTCA 59.926 57.895 0.00 0.00 0.00 3.27
310 312 0.500178 CTAATCGACAGCGTGCATCG 59.500 55.000 11.03 11.03 43.12 3.84
312 314 4.794439 TCGACAGCGTGCATCGGG 62.794 66.667 15.50 0.00 40.26 5.14
327 329 2.973694 TCGGGTTGCAAGATAGGTAC 57.026 50.000 0.00 0.00 0.00 3.34
328 330 2.463752 TCGGGTTGCAAGATAGGTACT 58.536 47.619 0.00 0.00 46.37 2.73
329 331 7.469039 GCATCGGGTTGCAAGATAGGTACTA 62.469 48.000 0.00 0.00 43.43 1.82
341 343 1.183549 AGGTACTAGCACCAACGAGG 58.816 55.000 14.76 0.00 41.40 4.63
342 344 1.180029 GGTACTAGCACCAACGAGGA 58.820 55.000 7.31 0.00 41.22 3.71
343 345 1.547372 GGTACTAGCACCAACGAGGAA 59.453 52.381 7.31 0.00 41.22 3.36
344 346 2.603953 GTACTAGCACCAACGAGGAAC 58.396 52.381 5.70 0.00 41.22 3.62
345 347 1.045407 ACTAGCACCAACGAGGAACA 58.955 50.000 5.70 0.00 41.22 3.18
346 348 1.414919 ACTAGCACCAACGAGGAACAA 59.585 47.619 5.70 0.00 41.22 2.83
347 349 2.038557 ACTAGCACCAACGAGGAACAAT 59.961 45.455 5.70 0.00 41.22 2.71
348 350 1.238439 AGCACCAACGAGGAACAATG 58.762 50.000 5.70 0.00 41.22 2.82
349 351 0.387239 GCACCAACGAGGAACAATGC 60.387 55.000 5.70 1.41 41.22 3.56
350 352 0.950836 CACCAACGAGGAACAATGCA 59.049 50.000 5.70 0.00 41.22 3.96
351 353 1.541147 CACCAACGAGGAACAATGCAT 59.459 47.619 0.00 0.00 41.22 3.96
352 354 1.541147 ACCAACGAGGAACAATGCATG 59.459 47.619 0.00 0.00 41.22 4.06
353 355 1.135315 CCAACGAGGAACAATGCATGG 60.135 52.381 0.00 0.00 41.22 3.66
354 356 1.811965 CAACGAGGAACAATGCATGGA 59.188 47.619 8.45 0.00 0.00 3.41
355 357 1.742761 ACGAGGAACAATGCATGGAG 58.257 50.000 8.45 0.00 0.00 3.86
356 358 1.278985 ACGAGGAACAATGCATGGAGA 59.721 47.619 8.45 0.00 0.00 3.71
357 359 2.092753 ACGAGGAACAATGCATGGAGAT 60.093 45.455 8.45 0.00 0.00 2.75
358 360 2.289820 CGAGGAACAATGCATGGAGATG 59.710 50.000 8.45 0.23 0.00 2.90
359 361 2.621998 GAGGAACAATGCATGGAGATGG 59.378 50.000 8.45 0.00 0.00 3.51
420 453 2.282462 CAGGGGTGTCCTTGGTGC 60.282 66.667 0.00 0.00 45.47 5.01
575 608 1.069765 CCTGTGACTGACAACCGCT 59.930 57.895 0.00 0.00 32.80 5.52
871 909 1.135315 CGTGTACGTGTACGGGAGG 59.865 63.158 15.78 0.00 44.95 4.30
983 1022 3.414700 CGAGCAGCAACGGTGGAC 61.415 66.667 0.90 0.00 0.00 4.02
984 1023 2.031163 GAGCAGCAACGGTGGACT 59.969 61.111 0.90 0.00 0.00 3.85
985 1024 2.281070 AGCAGCAACGGTGGACTG 60.281 61.111 0.90 2.73 0.00 3.51
1042 1081 2.202492 CCGTCCTTCGCGTCTCTG 60.202 66.667 5.77 0.00 38.35 3.35
1053 1092 4.838486 GTCTCTGCCCGCTCGACG 62.838 72.222 0.00 0.00 43.15 5.12
1137 1176 1.330655 ACTCCGGCCACTCTGGTATG 61.331 60.000 2.24 0.00 40.46 2.39
1149 1188 2.421424 CTCTGGTATGTTTGCTTCTGCC 59.579 50.000 0.00 0.00 38.71 4.85
1156 1195 1.228956 TTTGCTTCTGCCCCATGCT 60.229 52.632 0.00 0.00 42.00 3.79
1157 1196 0.039472 TTTGCTTCTGCCCCATGCTA 59.961 50.000 0.00 0.00 42.00 3.49
1158 1197 0.259647 TTGCTTCTGCCCCATGCTAT 59.740 50.000 0.00 0.00 42.00 2.97
1159 1198 0.259647 TGCTTCTGCCCCATGCTATT 59.740 50.000 0.00 0.00 42.00 1.73
1160 1199 1.342275 TGCTTCTGCCCCATGCTATTT 60.342 47.619 0.00 0.00 42.00 1.40
1182 1226 3.941573 TCTTGTGATAATGAGCTGCACA 58.058 40.909 1.49 1.49 37.66 4.57
1183 1227 3.937079 TCTTGTGATAATGAGCTGCACAG 59.063 43.478 5.89 0.00 40.16 3.66
1189 1233 1.747709 AATGAGCTGCACAGATCCAC 58.252 50.000 12.95 0.00 42.79 4.02
1190 1234 0.107312 ATGAGCTGCACAGATCCACC 60.107 55.000 12.95 0.00 42.79 4.61
1199 1243 0.749649 ACAGATCCACCGAGCAGATC 59.250 55.000 0.00 0.00 0.00 2.75
1296 1343 3.394836 GGGACAGAGGAGGCGCTT 61.395 66.667 7.64 0.00 0.00 4.68
1297 1344 2.058595 GGGACAGAGGAGGCGCTTA 61.059 63.158 7.64 0.00 0.00 3.09
1345 1392 0.321653 AAGCCACGGATGACAAGGTC 60.322 55.000 0.00 0.00 0.00 3.85
1369 1416 3.422303 GCATGCGTTGCGTCCTGA 61.422 61.111 0.00 0.00 42.54 3.86
1370 1417 2.965147 GCATGCGTTGCGTCCTGAA 61.965 57.895 0.00 0.00 42.54 3.02
1371 1418 1.573932 CATGCGTTGCGTCCTGAAA 59.426 52.632 0.00 0.00 0.00 2.69
1372 1419 0.453282 CATGCGTTGCGTCCTGAAAG 60.453 55.000 0.00 0.00 0.00 2.62
1373 1420 2.127232 GCGTTGCGTCCTGAAAGC 60.127 61.111 0.00 0.00 0.00 3.51
1374 1421 2.607892 GCGTTGCGTCCTGAAAGCT 61.608 57.895 0.00 0.00 0.00 3.74
1381 1428 1.201965 GCGTCCTGAAAGCTGAAATCG 60.202 52.381 0.00 0.00 0.00 3.34
1384 1431 3.067106 GTCCTGAAAGCTGAAATCGTCA 58.933 45.455 0.00 0.00 34.17 4.35
1396 1443 3.336566 TCGTCAGCGACTCGTTCA 58.663 55.556 0.00 0.00 42.81 3.18
1398 1445 1.082038 CGTCAGCGACTCGTTCAGT 60.082 57.895 0.00 0.00 41.33 3.41
1407 1454 0.318784 ACTCGTTCAGTCTTCCACGC 60.319 55.000 0.00 0.00 32.59 5.34
1409 1456 2.372690 CGTTCAGTCTTCCACGCCG 61.373 63.158 0.00 0.00 0.00 6.46
1413 1460 4.719369 AGTCTTCCACGCCGCGTC 62.719 66.667 17.16 3.45 38.32 5.19
1429 1476 2.284331 TCGGGAGCTAACCAGGCA 60.284 61.111 7.62 0.00 0.00 4.75
1569 1616 3.009584 AGGTGACCCTCTTCTTGATTTCC 59.990 47.826 0.00 0.00 35.62 3.13
1579 1629 6.209391 CCTCTTCTTGATTTCCCTAGCAAAAA 59.791 38.462 0.00 0.00 0.00 1.94
1582 1632 5.144100 TCTTGATTTCCCTAGCAAAAACCA 58.856 37.500 0.00 0.00 0.00 3.67
1614 1664 2.478539 GGTTTGCCATCGATGAAGAAGC 60.479 50.000 26.86 19.85 34.09 3.86
1615 1665 2.408271 TTGCCATCGATGAAGAAGCT 57.592 45.000 26.86 0.00 0.00 3.74
1617 1667 1.065926 TGCCATCGATGAAGAAGCTGT 60.066 47.619 26.86 0.00 0.00 4.40
1618 1668 1.596727 GCCATCGATGAAGAAGCTGTC 59.403 52.381 26.86 0.73 0.00 3.51
1619 1669 2.741228 GCCATCGATGAAGAAGCTGTCT 60.741 50.000 26.86 0.00 38.69 3.41
1620 1670 2.864946 CCATCGATGAAGAAGCTGTCTG 59.135 50.000 26.86 1.02 36.40 3.51
1628 1685 5.403897 TGAAGAAGCTGTCTGTTTTTACG 57.596 39.130 0.00 0.00 36.40 3.18
1636 1693 4.508861 GCTGTCTGTTTTTACGTGAACCTA 59.491 41.667 0.00 0.00 0.00 3.08
1640 1697 6.203338 TGTCTGTTTTTACGTGAACCTAATCC 59.797 38.462 0.00 0.00 0.00 3.01
1641 1698 6.426025 GTCTGTTTTTACGTGAACCTAATCCT 59.574 38.462 0.00 0.00 0.00 3.24
1642 1699 6.425721 TCTGTTTTTACGTGAACCTAATCCTG 59.574 38.462 0.00 0.00 0.00 3.86
1643 1700 6.289834 TGTTTTTACGTGAACCTAATCCTGA 58.710 36.000 0.00 0.00 0.00 3.86
1644 1701 6.938030 TGTTTTTACGTGAACCTAATCCTGAT 59.062 34.615 0.00 0.00 0.00 2.90
1645 1702 7.118680 TGTTTTTACGTGAACCTAATCCTGATC 59.881 37.037 0.00 0.00 0.00 2.92
1646 1703 5.925506 TTACGTGAACCTAATCCTGATCA 57.074 39.130 0.00 0.00 0.00 2.92
1647 1704 4.124851 ACGTGAACCTAATCCTGATCAC 57.875 45.455 0.00 0.00 35.13 3.06
1651 1708 5.175859 GTGAACCTAATCCTGATCACGAAA 58.824 41.667 0.00 0.00 0.00 3.46
1654 1711 3.123804 CCTAATCCTGATCACGAAACCG 58.876 50.000 0.00 0.00 0.00 4.44
1666 1723 1.070275 GAAACCGTTCCCTGACCGT 59.930 57.895 0.00 0.00 0.00 4.83
1852 1909 2.814336 GGTGAGCTAGTGACCCTTTTTG 59.186 50.000 0.00 0.00 0.00 2.44
1854 1911 1.813178 GAGCTAGTGACCCTTTTTGCC 59.187 52.381 0.00 0.00 0.00 4.52
1855 1912 1.144913 AGCTAGTGACCCTTTTTGCCA 59.855 47.619 0.00 0.00 0.00 4.92
1857 1914 2.863809 CTAGTGACCCTTTTTGCCACT 58.136 47.619 0.00 0.00 40.66 4.00
1858 1915 1.692411 AGTGACCCTTTTTGCCACTC 58.308 50.000 0.00 0.00 33.27 3.51
1859 1916 1.215423 AGTGACCCTTTTTGCCACTCT 59.785 47.619 0.00 0.00 33.27 3.24
1860 1917 1.609072 GTGACCCTTTTTGCCACTCTC 59.391 52.381 0.00 0.00 0.00 3.20
1861 1918 1.494721 TGACCCTTTTTGCCACTCTCT 59.505 47.619 0.00 0.00 0.00 3.10
1864 1921 0.600057 CCTTTTTGCCACTCTCTGCC 59.400 55.000 0.00 0.00 0.00 4.85
1865 1922 1.613836 CTTTTTGCCACTCTCTGCCT 58.386 50.000 0.00 0.00 0.00 4.75
1867 1924 0.473755 TTTTGCCACTCTCTGCCTGA 59.526 50.000 0.00 0.00 0.00 3.86
1868 1925 0.035881 TTTGCCACTCTCTGCCTGAG 59.964 55.000 0.00 0.00 43.96 3.35
1869 1926 1.834856 TTGCCACTCTCTGCCTGAGG 61.835 60.000 0.00 0.00 42.86 3.86
1880 1937 2.029073 CCTGAGGCACACGACGTT 59.971 61.111 0.00 0.00 0.00 3.99
1881 1938 2.022129 CCTGAGGCACACGACGTTC 61.022 63.158 0.00 0.00 0.00 3.95
1884 1941 0.874175 TGAGGCACACGACGTTCAAG 60.874 55.000 0.00 0.00 0.00 3.02
1892 1958 1.517276 CACGACGTTCAAGTGTGAGTC 59.483 52.381 0.00 0.00 34.49 3.36
1900 1966 1.067060 TCAAGTGTGAGTCGTGACTGG 59.933 52.381 7.35 0.00 42.66 4.00
2027 2095 1.834822 GACGAGGAGGGATCAGGGG 60.835 68.421 0.00 0.00 0.00 4.79
2101 2169 6.249192 TCCTAGAACACCTCGATCATGATAT 58.751 40.000 8.54 0.00 0.00 1.63
2114 2182 5.807520 CGATCATGATATTAGCCCAGTACAC 59.192 44.000 8.54 0.00 0.00 2.90
2115 2183 6.572314 CGATCATGATATTAGCCCAGTACACA 60.572 42.308 8.54 0.00 0.00 3.72
2149 2218 3.829948 CTTGCATCGATTGATTATGGCC 58.170 45.455 0.00 0.00 30.49 5.36
2234 2303 4.755629 TGAGTTATACTCCGATCTCCGAAG 59.244 45.833 4.52 0.00 44.44 3.79
2280 2349 5.060884 TGAACGCGATACATAAATCAACG 57.939 39.130 15.93 0.00 33.58 4.10
2286 2355 5.423717 GCGATACATAAATCAACGTGACAG 58.576 41.667 0.00 0.00 0.00 3.51
2308 2377 6.882610 AGCAAAACTGAGATATTGTGTGAA 57.117 33.333 0.00 0.00 0.00 3.18
2309 2378 6.672147 AGCAAAACTGAGATATTGTGTGAAC 58.328 36.000 0.00 0.00 0.00 3.18
2310 2379 5.858581 GCAAAACTGAGATATTGTGTGAACC 59.141 40.000 0.00 0.00 0.00 3.62
2311 2380 6.514870 GCAAAACTGAGATATTGTGTGAACCA 60.515 38.462 0.00 0.00 0.00 3.67
2312 2381 7.424803 CAAAACTGAGATATTGTGTGAACCAA 58.575 34.615 0.00 0.00 0.00 3.67
2313 2382 6.560253 AACTGAGATATTGTGTGAACCAAC 57.440 37.500 0.00 0.00 0.00 3.77
2314 2383 5.003804 ACTGAGATATTGTGTGAACCAACC 58.996 41.667 0.00 0.00 0.00 3.77
2315 2384 5.221925 ACTGAGATATTGTGTGAACCAACCT 60.222 40.000 0.00 0.00 0.00 3.50
2316 2385 6.013725 ACTGAGATATTGTGTGAACCAACCTA 60.014 38.462 0.00 0.00 0.00 3.08
2317 2386 6.957631 TGAGATATTGTGTGAACCAACCTAT 58.042 36.000 0.00 0.00 0.00 2.57
2318 2387 6.823182 TGAGATATTGTGTGAACCAACCTATG 59.177 38.462 0.00 0.00 0.00 2.23
2331 2400 5.835113 CCAACCTATGGTTTGGATACTTG 57.165 43.478 0.00 0.00 44.33 3.16
2332 2401 4.644685 CCAACCTATGGTTTGGATACTTGG 59.355 45.833 0.00 0.00 44.33 3.61
2333 2402 5.505780 CAACCTATGGTTTGGATACTTGGA 58.494 41.667 0.00 0.00 44.33 3.53
2334 2403 5.994416 ACCTATGGTTTGGATACTTGGAT 57.006 39.130 0.00 0.00 27.29 3.41
2335 2404 7.287061 CAACCTATGGTTTGGATACTTGGATA 58.713 38.462 0.00 0.00 44.33 2.59
2336 2405 7.648177 ACCTATGGTTTGGATACTTGGATAT 57.352 36.000 0.00 0.00 27.29 1.63
2337 2406 8.057246 ACCTATGGTTTGGATACTTGGATATT 57.943 34.615 0.00 0.00 27.29 1.28
2338 2407 8.511126 ACCTATGGTTTGGATACTTGGATATTT 58.489 33.333 0.00 0.00 27.29 1.40
2341 2410 8.940397 ATGGTTTGGATACTTGGATATTTAGG 57.060 34.615 0.00 0.00 37.61 2.69
2342 2411 8.108378 TGGTTTGGATACTTGGATATTTAGGA 57.892 34.615 0.00 0.00 37.61 2.94
2343 2412 7.996644 TGGTTTGGATACTTGGATATTTAGGAC 59.003 37.037 0.00 0.00 37.61 3.85
2344 2413 7.172703 GGTTTGGATACTTGGATATTTAGGACG 59.827 40.741 0.00 0.00 37.61 4.79
2345 2414 7.606135 TTGGATACTTGGATATTTAGGACGA 57.394 36.000 0.00 0.00 37.61 4.20
2346 2415 6.989659 TGGATACTTGGATATTTAGGACGAC 58.010 40.000 0.00 0.00 37.61 4.34
2347 2416 6.551975 TGGATACTTGGATATTTAGGACGACA 59.448 38.462 0.00 0.00 37.61 4.35
2348 2417 7.070198 TGGATACTTGGATATTTAGGACGACAA 59.930 37.037 0.00 0.00 37.61 3.18
2349 2418 8.095169 GGATACTTGGATATTTAGGACGACAAT 58.905 37.037 0.00 0.00 0.00 2.71
2350 2419 8.833231 ATACTTGGATATTTAGGACGACAATG 57.167 34.615 0.00 0.00 0.00 2.82
2351 2420 6.884832 ACTTGGATATTTAGGACGACAATGA 58.115 36.000 0.00 0.00 0.00 2.57
2352 2421 7.509546 ACTTGGATATTTAGGACGACAATGAT 58.490 34.615 0.00 0.00 0.00 2.45
2353 2422 8.647796 ACTTGGATATTTAGGACGACAATGATA 58.352 33.333 0.00 0.00 0.00 2.15
2354 2423 9.658799 CTTGGATATTTAGGACGACAATGATAT 57.341 33.333 0.00 0.00 0.00 1.63
2355 2424 9.653287 TTGGATATTTAGGACGACAATGATATC 57.347 33.333 0.00 0.00 0.00 1.63
2356 2425 9.035890 TGGATATTTAGGACGACAATGATATCT 57.964 33.333 3.98 0.00 0.00 1.98
2357 2426 9.522804 GGATATTTAGGACGACAATGATATCTC 57.477 37.037 3.98 0.00 0.00 2.75
2358 2427 9.522804 GATATTTAGGACGACAATGATATCTCC 57.477 37.037 3.98 0.63 0.00 3.71
2359 2428 3.924918 AGGACGACAATGATATCTCCG 57.075 47.619 3.98 3.30 0.00 4.63
2360 2429 2.558795 AGGACGACAATGATATCTCCGG 59.441 50.000 3.98 0.00 0.00 5.14
2361 2430 2.296471 GGACGACAATGATATCTCCGGT 59.704 50.000 0.00 0.00 0.00 5.28
2362 2431 3.566523 GACGACAATGATATCTCCGGTC 58.433 50.000 0.00 5.93 0.00 4.79
2363 2432 2.296471 ACGACAATGATATCTCCGGTCC 59.704 50.000 0.00 0.00 0.00 4.46
2364 2433 2.296190 CGACAATGATATCTCCGGTCCA 59.704 50.000 0.00 0.00 0.00 4.02
2365 2434 3.056536 CGACAATGATATCTCCGGTCCAT 60.057 47.826 0.00 0.00 0.00 3.41
2366 2435 4.499183 GACAATGATATCTCCGGTCCATC 58.501 47.826 0.00 1.25 0.00 3.51
2367 2436 3.903714 ACAATGATATCTCCGGTCCATCA 59.096 43.478 0.00 7.27 0.00 3.07
2368 2437 4.020751 ACAATGATATCTCCGGTCCATCAG 60.021 45.833 0.00 0.00 0.00 2.90
2369 2438 2.529632 TGATATCTCCGGTCCATCAGG 58.470 52.381 0.00 0.00 0.00 3.86
2370 2439 1.827969 GATATCTCCGGTCCATCAGGG 59.172 57.143 0.00 0.00 34.83 4.45
2371 2440 0.561184 TATCTCCGGTCCATCAGGGT 59.439 55.000 0.00 0.00 38.11 4.34
2372 2441 0.326618 ATCTCCGGTCCATCAGGGTT 60.327 55.000 0.00 0.00 38.11 4.11
2373 2442 0.976073 TCTCCGGTCCATCAGGGTTC 60.976 60.000 0.00 0.00 38.11 3.62
2374 2443 1.229368 TCCGGTCCATCAGGGTTCA 60.229 57.895 0.00 0.00 38.11 3.18
2375 2444 0.838554 TCCGGTCCATCAGGGTTCAA 60.839 55.000 0.00 0.00 38.11 2.69
2376 2445 0.037590 CCGGTCCATCAGGGTTCAAA 59.962 55.000 0.00 0.00 38.11 2.69
2377 2446 1.340991 CCGGTCCATCAGGGTTCAAAT 60.341 52.381 0.00 0.00 38.11 2.32
2378 2447 2.017049 CGGTCCATCAGGGTTCAAATC 58.983 52.381 0.00 0.00 38.11 2.17
2379 2448 2.379005 GGTCCATCAGGGTTCAAATCC 58.621 52.381 0.00 0.00 38.11 3.01
2380 2449 2.024941 GGTCCATCAGGGTTCAAATCCT 60.025 50.000 0.00 0.00 41.23 3.24
2381 2450 3.564352 GGTCCATCAGGGTTCAAATCCTT 60.564 47.826 0.00 0.00 37.45 3.36
2382 2451 3.445096 GTCCATCAGGGTTCAAATCCTTG 59.555 47.826 0.00 0.00 37.45 3.61
2383 2452 3.075882 TCCATCAGGGTTCAAATCCTTGT 59.924 43.478 0.00 0.00 37.45 3.16
2384 2453 3.194116 CCATCAGGGTTCAAATCCTTGTG 59.806 47.826 0.00 0.00 37.45 3.33
2385 2454 2.238521 TCAGGGTTCAAATCCTTGTGC 58.761 47.619 0.00 0.00 37.45 4.57
2386 2455 2.158475 TCAGGGTTCAAATCCTTGTGCT 60.158 45.455 0.00 0.00 37.45 4.40
2387 2456 2.229784 CAGGGTTCAAATCCTTGTGCTC 59.770 50.000 0.00 0.00 37.45 4.26
2388 2457 1.200020 GGGTTCAAATCCTTGTGCTCG 59.800 52.381 0.00 0.00 33.94 5.03
2389 2458 1.401539 GGTTCAAATCCTTGTGCTCGC 60.402 52.381 0.00 0.00 33.94 5.03
2390 2459 1.266718 GTTCAAATCCTTGTGCTCGCA 59.733 47.619 0.00 0.00 33.94 5.10
2391 2460 1.825090 TCAAATCCTTGTGCTCGCAT 58.175 45.000 0.00 0.00 33.94 4.73
2392 2461 2.161855 TCAAATCCTTGTGCTCGCATT 58.838 42.857 0.00 0.00 33.94 3.56
2393 2462 2.557924 TCAAATCCTTGTGCTCGCATTT 59.442 40.909 0.00 0.00 33.94 2.32
2394 2463 3.755905 TCAAATCCTTGTGCTCGCATTTA 59.244 39.130 0.00 0.00 33.94 1.40
2395 2464 4.398988 TCAAATCCTTGTGCTCGCATTTAT 59.601 37.500 0.00 0.00 33.94 1.40
2396 2465 4.558538 AATCCTTGTGCTCGCATTTATC 57.441 40.909 0.00 0.00 0.00 1.75
2397 2466 2.288666 TCCTTGTGCTCGCATTTATCC 58.711 47.619 0.00 0.00 0.00 2.59
2398 2467 2.092968 TCCTTGTGCTCGCATTTATCCT 60.093 45.455 0.00 0.00 0.00 3.24
2399 2468 2.032550 CCTTGTGCTCGCATTTATCCTG 59.967 50.000 0.00 0.00 0.00 3.86
2400 2469 1.667236 TGTGCTCGCATTTATCCTGG 58.333 50.000 0.00 0.00 0.00 4.45
2401 2470 1.209261 TGTGCTCGCATTTATCCTGGA 59.791 47.619 0.00 0.00 0.00 3.86
2402 2471 2.158769 TGTGCTCGCATTTATCCTGGAT 60.159 45.455 14.66 14.66 0.00 3.41
2403 2472 2.880890 GTGCTCGCATTTATCCTGGATT 59.119 45.455 15.55 0.00 0.00 3.01
2404 2473 3.316308 GTGCTCGCATTTATCCTGGATTT 59.684 43.478 15.55 0.00 0.00 2.17
2405 2474 4.515191 GTGCTCGCATTTATCCTGGATTTA 59.485 41.667 15.55 3.70 0.00 1.40
2406 2475 5.182001 GTGCTCGCATTTATCCTGGATTTAT 59.818 40.000 15.55 5.99 0.00 1.40
2407 2476 5.769662 TGCTCGCATTTATCCTGGATTTATT 59.230 36.000 15.55 0.00 0.00 1.40
2408 2477 6.265196 TGCTCGCATTTATCCTGGATTTATTT 59.735 34.615 15.55 0.00 0.00 1.40
2409 2478 7.147976 GCTCGCATTTATCCTGGATTTATTTT 58.852 34.615 15.55 0.00 0.00 1.82
2410 2479 8.296713 GCTCGCATTTATCCTGGATTTATTTTA 58.703 33.333 15.55 0.00 0.00 1.52
2421 2490 9.665719 TCCTGGATTTATTTTAAAATTTCTGGC 57.334 29.630 18.14 4.68 30.60 4.85
2422 2491 8.603181 CCTGGATTTATTTTAAAATTTCTGGCG 58.397 33.333 18.14 4.19 0.00 5.69
2423 2492 9.364989 CTGGATTTATTTTAAAATTTCTGGCGA 57.635 29.630 18.14 0.00 0.00 5.54
2424 2493 9.883142 TGGATTTATTTTAAAATTTCTGGCGAT 57.117 25.926 18.14 2.81 0.00 4.58
2437 2506 4.872476 GCGATACGCGTTCAATGG 57.128 55.556 20.78 7.69 44.55 3.16
2438 2507 1.275657 GCGATACGCGTTCAATGGG 59.724 57.895 20.78 0.19 44.55 4.00
2439 2508 1.149361 GCGATACGCGTTCAATGGGA 61.149 55.000 20.78 0.00 44.55 4.37
2440 2509 0.852777 CGATACGCGTTCAATGGGAG 59.147 55.000 20.78 0.00 34.64 4.30
2441 2510 1.217882 GATACGCGTTCAATGGGAGG 58.782 55.000 20.78 0.00 0.00 4.30
2442 2511 0.828022 ATACGCGTTCAATGGGAGGA 59.172 50.000 20.78 0.00 0.00 3.71
2443 2512 0.174845 TACGCGTTCAATGGGAGGAG 59.825 55.000 20.78 0.00 0.00 3.69
2444 2513 1.218047 CGCGTTCAATGGGAGGAGA 59.782 57.895 0.00 0.00 0.00 3.71
2445 2514 1.084370 CGCGTTCAATGGGAGGAGAC 61.084 60.000 0.00 0.00 0.00 3.36
2446 2515 1.084370 GCGTTCAATGGGAGGAGACG 61.084 60.000 0.00 0.00 0.00 4.18
2447 2516 0.246635 CGTTCAATGGGAGGAGACGT 59.753 55.000 0.00 0.00 0.00 4.34
2448 2517 1.337823 CGTTCAATGGGAGGAGACGTT 60.338 52.381 0.00 0.00 0.00 3.99
2449 2518 2.779506 GTTCAATGGGAGGAGACGTTT 58.220 47.619 0.00 0.00 0.00 3.60
2450 2519 3.146847 GTTCAATGGGAGGAGACGTTTT 58.853 45.455 0.00 0.00 0.00 2.43
2451 2520 2.778299 TCAATGGGAGGAGACGTTTTG 58.222 47.619 0.00 0.00 0.00 2.44
2452 2521 1.812571 CAATGGGAGGAGACGTTTTGG 59.187 52.381 0.00 0.00 0.00 3.28
2453 2522 1.064825 ATGGGAGGAGACGTTTTGGT 58.935 50.000 0.00 0.00 0.00 3.67
2454 2523 0.395312 TGGGAGGAGACGTTTTGGTC 59.605 55.000 0.00 0.00 37.19 4.02
2455 2524 0.669625 GGGAGGAGACGTTTTGGTCG 60.670 60.000 0.00 0.00 41.81 4.79
2456 2525 0.316204 GGAGGAGACGTTTTGGTCGA 59.684 55.000 0.00 0.00 41.81 4.20
2457 2526 1.416373 GAGGAGACGTTTTGGTCGAC 58.584 55.000 7.13 7.13 41.81 4.20
2458 2527 1.000496 GAGGAGACGTTTTGGTCGACT 60.000 52.381 16.46 0.00 41.81 4.18
2459 2528 2.227388 GAGGAGACGTTTTGGTCGACTA 59.773 50.000 16.46 6.50 41.81 2.59
2460 2529 2.030451 AGGAGACGTTTTGGTCGACTAC 60.030 50.000 16.46 7.89 41.81 2.73
2461 2530 1.974680 GAGACGTTTTGGTCGACTACG 59.025 52.381 16.46 19.93 41.81 3.51
2462 2531 1.603802 AGACGTTTTGGTCGACTACGA 59.396 47.619 26.67 9.29 46.56 3.43
2470 2539 4.476361 TCGACTACGACGCGTCTA 57.524 55.556 33.94 23.19 43.81 2.59
2471 2540 2.963499 TCGACTACGACGCGTCTAT 58.037 52.632 33.94 24.50 43.81 1.98
2472 2541 0.573987 TCGACTACGACGCGTCTATG 59.426 55.000 33.94 24.32 43.81 2.23
2473 2542 0.985902 CGACTACGACGCGTCTATGC 60.986 60.000 33.94 18.87 41.54 3.14
2474 2543 0.304098 GACTACGACGCGTCTATGCT 59.696 55.000 33.94 14.41 41.54 3.79
2475 2544 0.027716 ACTACGACGCGTCTATGCTG 59.972 55.000 33.94 20.79 41.54 4.41
2476 2545 0.303796 CTACGACGCGTCTATGCTGA 59.696 55.000 33.94 11.95 41.54 4.26
2477 2546 0.027194 TACGACGCGTCTATGCTGAC 59.973 55.000 33.94 8.19 41.54 3.51
2478 2547 1.062685 CGACGCGTCTATGCTGACT 59.937 57.895 33.94 0.00 35.00 3.41
2479 2548 0.523546 CGACGCGTCTATGCTGACTT 60.524 55.000 33.94 0.00 35.00 3.01
2480 2549 1.192793 GACGCGTCTATGCTGACTTC 58.807 55.000 31.12 0.44 35.00 3.01
2481 2550 0.523546 ACGCGTCTATGCTGACTTCG 60.524 55.000 5.58 0.00 36.98 3.79
2482 2551 0.523546 CGCGTCTATGCTGACTTCGT 60.524 55.000 0.00 0.00 35.00 3.85
2483 2552 1.267882 CGCGTCTATGCTGACTTCGTA 60.268 52.381 0.00 0.00 35.00 3.43
2484 2553 2.790123 CGCGTCTATGCTGACTTCGTAA 60.790 50.000 0.00 0.00 35.00 3.18
2485 2554 3.176708 GCGTCTATGCTGACTTCGTAAA 58.823 45.455 0.00 0.00 35.00 2.01
2486 2555 3.611113 GCGTCTATGCTGACTTCGTAAAA 59.389 43.478 0.00 0.00 35.00 1.52
2487 2556 4.267928 GCGTCTATGCTGACTTCGTAAAAT 59.732 41.667 0.00 0.00 35.00 1.82
2488 2557 5.554696 GCGTCTATGCTGACTTCGTAAAATC 60.555 44.000 0.00 0.00 35.00 2.17
2489 2558 5.744345 CGTCTATGCTGACTTCGTAAAATCT 59.256 40.000 0.00 0.00 35.00 2.40
2490 2559 6.075310 CGTCTATGCTGACTTCGTAAAATCTC 60.075 42.308 0.00 0.00 35.00 2.75
2491 2560 6.752351 GTCTATGCTGACTTCGTAAAATCTCA 59.248 38.462 0.00 0.00 34.39 3.27
2492 2561 7.275779 GTCTATGCTGACTTCGTAAAATCTCAA 59.724 37.037 0.00 0.00 34.39 3.02
2493 2562 5.845985 TGCTGACTTCGTAAAATCTCAAG 57.154 39.130 0.00 0.00 0.00 3.02
2494 2563 5.538118 TGCTGACTTCGTAAAATCTCAAGA 58.462 37.500 0.00 0.00 0.00 3.02
2495 2564 6.166279 TGCTGACTTCGTAAAATCTCAAGAT 58.834 36.000 0.00 0.00 36.07 2.40
2496 2565 6.091305 TGCTGACTTCGTAAAATCTCAAGATG 59.909 38.462 0.00 0.00 34.49 2.90
2497 2566 6.311445 GCTGACTTCGTAAAATCTCAAGATGA 59.689 38.462 0.00 0.00 34.49 2.92
2498 2567 7.010923 GCTGACTTCGTAAAATCTCAAGATGAT 59.989 37.037 0.00 0.00 34.49 2.45
2499 2568 9.521503 CTGACTTCGTAAAATCTCAAGATGATA 57.478 33.333 0.00 0.00 34.49 2.15
2502 2571 8.768955 ACTTCGTAAAATCTCAAGATGATATGC 58.231 33.333 0.00 0.00 34.49 3.14
2503 2572 7.658179 TCGTAAAATCTCAAGATGATATGCC 57.342 36.000 0.00 0.00 34.49 4.40
2504 2573 6.366061 TCGTAAAATCTCAAGATGATATGCCG 59.634 38.462 0.00 0.00 34.49 5.69
2505 2574 5.368256 AAAATCTCAAGATGATATGCCGC 57.632 39.130 0.00 0.00 34.49 6.53
2506 2575 2.462456 TCTCAAGATGATATGCCGCC 57.538 50.000 0.00 0.00 0.00 6.13
2507 2576 1.973515 TCTCAAGATGATATGCCGCCT 59.026 47.619 0.00 0.00 0.00 5.52
2508 2577 2.028658 TCTCAAGATGATATGCCGCCTC 60.029 50.000 0.00 0.00 0.00 4.70
2509 2578 1.693606 TCAAGATGATATGCCGCCTCA 59.306 47.619 0.00 0.00 0.00 3.86
2510 2579 2.074576 CAAGATGATATGCCGCCTCAG 58.925 52.381 0.00 0.00 0.00 3.35
2511 2580 1.346062 AGATGATATGCCGCCTCAGT 58.654 50.000 0.00 0.00 0.00 3.41
2512 2581 1.001746 AGATGATATGCCGCCTCAGTG 59.998 52.381 0.00 0.00 0.00 3.66
2513 2582 0.761187 ATGATATGCCGCCTCAGTGT 59.239 50.000 0.00 0.00 0.00 3.55
2514 2583 0.104855 TGATATGCCGCCTCAGTGTC 59.895 55.000 0.00 0.00 0.00 3.67
2515 2584 0.390860 GATATGCCGCCTCAGTGTCT 59.609 55.000 0.00 0.00 0.00 3.41
2516 2585 0.390860 ATATGCCGCCTCAGTGTCTC 59.609 55.000 0.00 0.00 0.00 3.36
2517 2586 2.004808 TATGCCGCCTCAGTGTCTCG 62.005 60.000 0.00 0.00 0.00 4.04
2518 2587 3.749064 GCCGCCTCAGTGTCTCGA 61.749 66.667 0.00 0.00 0.00 4.04
2519 2588 2.962569 CCGCCTCAGTGTCTCGAA 59.037 61.111 0.00 0.00 0.00 3.71
2520 2589 1.153939 CCGCCTCAGTGTCTCGAAG 60.154 63.158 0.00 0.00 0.00 3.79
2521 2590 1.153939 CGCCTCAGTGTCTCGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
2522 2591 1.867919 CGCCTCAGTGTCTCGAAGGT 61.868 60.000 0.00 0.00 0.00 3.50
2523 2592 1.174783 GCCTCAGTGTCTCGAAGGTA 58.825 55.000 0.00 0.00 0.00 3.08
2524 2593 1.135344 GCCTCAGTGTCTCGAAGGTAC 60.135 57.143 0.00 0.00 0.00 3.34
2559 2628 5.010012 AGAGTAAATTGCAAGAAACCACCAG 59.990 40.000 4.94 0.00 0.00 4.00
2572 2641 1.073923 ACCACCAGTTTGAAGGCTAGG 59.926 52.381 0.00 0.00 0.00 3.02
2573 2642 1.614317 CCACCAGTTTGAAGGCTAGGG 60.614 57.143 0.00 0.00 0.00 3.53
2576 2645 2.177016 ACCAGTTTGAAGGCTAGGGTTT 59.823 45.455 0.00 0.00 0.00 3.27
2596 2665 6.416514 GGTTTCAGAAAACACTACGTTACAG 58.583 40.000 6.02 0.00 45.44 2.74
2598 2667 7.413328 GGTTTCAGAAAACACTACGTTACAGTT 60.413 37.037 6.02 0.00 45.44 3.16
2602 2671 8.170553 TCAGAAAACACTACGTTACAGTTTTTC 58.829 33.333 16.42 17.24 41.04 2.29
2618 2687 2.031258 TTTCGACAGAAAGCACCACA 57.969 45.000 0.00 0.00 41.06 4.17
2620 2689 1.795768 TCGACAGAAAGCACCACATC 58.204 50.000 0.00 0.00 0.00 3.06
2622 2691 2.146342 CGACAGAAAGCACCACATCTT 58.854 47.619 0.00 0.00 0.00 2.40
2626 2695 2.620115 CAGAAAGCACCACATCTTGTGT 59.380 45.455 6.86 0.00 46.45 3.72
2627 2696 3.814842 CAGAAAGCACCACATCTTGTGTA 59.185 43.478 6.86 0.00 46.45 2.90
2646 2715 7.922505 TGTGTAATCTTGTTGCAAATAACAC 57.077 32.000 0.00 9.65 40.04 3.32
2651 2720 7.878477 AATCTTGTTGCAAATAACACTGATG 57.122 32.000 0.00 0.00 40.04 3.07
2653 2722 4.517952 TGTTGCAAATAACACTGATGGG 57.482 40.909 0.00 0.00 35.75 4.00
2659 2728 2.550830 ATAACACTGATGGGCGGATC 57.449 50.000 0.00 0.00 0.00 3.36
2670 2739 0.178068 GGGCGGATCAGAGCACTTTA 59.822 55.000 0.00 0.00 33.25 1.85
2676 2745 4.210120 GCGGATCAGAGCACTTTAAGTATG 59.790 45.833 0.00 0.00 0.00 2.39
2686 2755 9.502091 AGAGCACTTTAAGTATGTTTATGACAA 57.498 29.630 0.00 0.00 42.62 3.18
2689 2758 9.329913 GCACTTTAAGTATGTTTATGACAAGTG 57.670 33.333 0.00 0.00 42.62 3.16
2694 2763 6.374417 AGTATGTTTATGACAAGTGGGTCT 57.626 37.500 0.00 0.00 42.62 3.85
2702 2771 7.921786 TTATGACAAGTGGGTCTAGATTTTG 57.078 36.000 0.00 0.00 38.61 2.44
2705 2774 2.403252 AGTGGGTCTAGATTTTGCCG 57.597 50.000 0.00 0.00 0.00 5.69
2720 2789 2.428902 CCGACGTGGCGTAACGAA 60.429 61.111 17.00 0.00 46.49 3.85
2728 2797 2.611894 GCGTAACGAATCGGCGTC 59.388 61.111 7.80 0.00 44.86 5.19
2744 2813 1.803943 GTCGATGGCGTCAGAGTCT 59.196 57.895 7.60 0.00 38.98 3.24
2752 2821 1.103803 GCGTCAGAGTCTACATGGGA 58.896 55.000 0.00 0.00 0.00 4.37
2755 2824 1.405821 GTCAGAGTCTACATGGGACCG 59.594 57.143 14.61 6.84 34.56 4.79
2760 2829 0.460311 GTCTACATGGGACCGACCTG 59.540 60.000 9.13 0.00 38.98 4.00
2766 2835 2.997897 GGGACCGACCTGTCAGCT 60.998 66.667 0.00 0.00 36.97 4.24
2770 2839 1.816863 GACCGACCTGTCAGCTGGAA 61.817 60.000 15.13 1.08 37.43 3.53
2776 2845 1.980765 ACCTGTCAGCTGGAATCTTCA 59.019 47.619 15.13 1.89 37.43 3.02
2793 2862 8.526147 GGAATCTTCAATTCATCCTTTTTCTCA 58.474 33.333 0.72 0.00 0.00 3.27
2795 2864 7.219484 TCTTCAATTCATCCTTTTTCTCACC 57.781 36.000 0.00 0.00 0.00 4.02
2796 2865 5.627499 TCAATTCATCCTTTTTCTCACCG 57.373 39.130 0.00 0.00 0.00 4.94
2817 2888 0.846693 AAATTCCTCCCTGATCCCCG 59.153 55.000 0.00 0.00 0.00 5.73
2818 2889 0.030092 AATTCCTCCCTGATCCCCGA 60.030 55.000 0.00 0.00 0.00 5.14
2819 2890 0.764752 ATTCCTCCCTGATCCCCGAC 60.765 60.000 0.00 0.00 0.00 4.79
2820 2891 3.227276 CCTCCCTGATCCCCGACG 61.227 72.222 0.00 0.00 0.00 5.12
2821 2892 3.917760 CTCCCTGATCCCCGACGC 61.918 72.222 0.00 0.00 0.00 5.19
2822 2893 4.770362 TCCCTGATCCCCGACGCA 62.770 66.667 0.00 0.00 0.00 5.24
2823 2894 4.227134 CCCTGATCCCCGACGCAG 62.227 72.222 0.00 0.00 0.00 5.18
2842 2936 4.096003 CCACGCCCGATCCCAACT 62.096 66.667 0.00 0.00 0.00 3.16
2849 2943 2.350895 CGATCCCAACTGCCACCA 59.649 61.111 0.00 0.00 0.00 4.17
2852 2946 0.323725 GATCCCAACTGCCACCACAT 60.324 55.000 0.00 0.00 0.00 3.21
2863 2957 4.722700 ACCACATGGCCGGACTGC 62.723 66.667 9.82 0.00 39.32 4.40
2915 3009 1.297409 CCCTCCCTCTACTCCTCCCA 61.297 65.000 0.00 0.00 0.00 4.37
2933 3031 1.531840 AGCCGCCTGGATCGACTAT 60.532 57.895 0.00 0.00 37.49 2.12
2938 3036 1.373497 CCTGGATCGACTATGCCGC 60.373 63.158 0.00 0.00 0.00 6.53
2947 3045 3.349006 CTATGCCGCGCCATGGAC 61.349 66.667 18.40 5.40 0.00 4.02
2960 3058 3.665675 ATGGACGAGCGCCAAGGAC 62.666 63.158 2.29 0.00 39.21 3.85
2985 3083 3.197790 CCATGGACGAGCGCCAAG 61.198 66.667 5.56 0.00 39.21 3.61
2986 3084 3.197790 CATGGACGAGCGCCAAGG 61.198 66.667 2.29 0.00 39.21 3.61
2987 3085 3.390521 ATGGACGAGCGCCAAGGA 61.391 61.111 2.29 0.00 39.21 3.36
2988 3086 2.735772 ATGGACGAGCGCCAAGGAT 61.736 57.895 2.29 0.00 39.21 3.24
3037 3139 0.729140 CCCGCAACGACAATTCTTGC 60.729 55.000 0.00 0.00 34.83 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.296392 CTCATCCGCCTGACCAACA 59.704 57.895 0.00 0.00 0.00 3.33
131 132 2.092914 GGTGGAGGTGAAATTCGAGGAT 60.093 50.000 0.00 0.00 0.00 3.24
191 192 0.036164 TGCGAGTGGCCAACATACTT 59.964 50.000 7.24 0.00 42.61 2.24
310 312 3.134081 TGCTAGTACCTATCTTGCAACCC 59.866 47.826 0.00 0.00 39.66 4.11
312 314 4.120589 GGTGCTAGTACCTATCTTGCAAC 58.879 47.826 21.62 3.21 42.72 4.17
327 329 2.163818 TTGTTCCTCGTTGGTGCTAG 57.836 50.000 0.00 0.00 37.07 3.42
328 330 2.422597 CATTGTTCCTCGTTGGTGCTA 58.577 47.619 0.00 0.00 37.07 3.49
329 331 1.238439 CATTGTTCCTCGTTGGTGCT 58.762 50.000 0.00 0.00 37.07 4.40
330 332 0.387239 GCATTGTTCCTCGTTGGTGC 60.387 55.000 0.00 0.00 37.07 5.01
331 333 0.950836 TGCATTGTTCCTCGTTGGTG 59.049 50.000 0.00 0.00 37.07 4.17
332 334 1.541147 CATGCATTGTTCCTCGTTGGT 59.459 47.619 0.00 0.00 37.07 3.67
333 335 1.135315 CCATGCATTGTTCCTCGTTGG 60.135 52.381 0.00 0.00 37.10 3.77
334 336 1.811965 TCCATGCATTGTTCCTCGTTG 59.188 47.619 0.00 0.00 0.00 4.10
335 337 2.086869 CTCCATGCATTGTTCCTCGTT 58.913 47.619 0.00 0.00 0.00 3.85
336 338 1.278985 TCTCCATGCATTGTTCCTCGT 59.721 47.619 0.00 0.00 0.00 4.18
337 339 2.028420 TCTCCATGCATTGTTCCTCG 57.972 50.000 0.00 0.00 0.00 4.63
338 340 2.621998 CCATCTCCATGCATTGTTCCTC 59.378 50.000 0.00 0.00 0.00 3.71
339 341 2.662866 CCATCTCCATGCATTGTTCCT 58.337 47.619 0.00 0.00 0.00 3.36
340 342 1.068127 GCCATCTCCATGCATTGTTCC 59.932 52.381 0.00 0.00 0.00 3.62
341 343 2.029623 AGCCATCTCCATGCATTGTTC 58.970 47.619 0.00 0.00 0.00 3.18
342 344 2.154567 AGCCATCTCCATGCATTGTT 57.845 45.000 0.00 0.00 0.00 2.83
343 345 2.440627 TCTAGCCATCTCCATGCATTGT 59.559 45.455 0.00 0.00 0.00 2.71
344 346 3.136009 TCTAGCCATCTCCATGCATTG 57.864 47.619 0.00 0.00 0.00 2.82
345 347 3.870538 TTCTAGCCATCTCCATGCATT 57.129 42.857 0.00 0.00 0.00 3.56
346 348 3.137913 ACTTTCTAGCCATCTCCATGCAT 59.862 43.478 0.00 0.00 0.00 3.96
347 349 2.507058 ACTTTCTAGCCATCTCCATGCA 59.493 45.455 0.00 0.00 0.00 3.96
348 350 3.205784 ACTTTCTAGCCATCTCCATGC 57.794 47.619 0.00 0.00 0.00 4.06
349 351 5.282055 TGTACTTTCTAGCCATCTCCATG 57.718 43.478 0.00 0.00 0.00 3.66
350 352 4.202305 GCTGTACTTTCTAGCCATCTCCAT 60.202 45.833 0.00 0.00 0.00 3.41
351 353 3.133003 GCTGTACTTTCTAGCCATCTCCA 59.867 47.826 0.00 0.00 0.00 3.86
352 354 3.133003 TGCTGTACTTTCTAGCCATCTCC 59.867 47.826 0.00 0.00 36.64 3.71
353 355 4.392921 TGCTGTACTTTCTAGCCATCTC 57.607 45.455 0.00 0.00 36.64 2.75
354 356 4.467795 TCTTGCTGTACTTTCTAGCCATCT 59.532 41.667 0.00 0.00 36.64 2.90
355 357 4.759782 TCTTGCTGTACTTTCTAGCCATC 58.240 43.478 0.00 0.00 36.64 3.51
356 358 4.826274 TCTTGCTGTACTTTCTAGCCAT 57.174 40.909 0.00 0.00 36.64 4.40
357 359 4.617253 TTCTTGCTGTACTTTCTAGCCA 57.383 40.909 0.00 0.00 36.64 4.75
358 360 4.268884 CGATTCTTGCTGTACTTTCTAGCC 59.731 45.833 0.00 0.00 36.64 3.93
359 361 5.103000 TCGATTCTTGCTGTACTTTCTAGC 58.897 41.667 0.00 0.00 37.93 3.42
420 453 1.532868 CTTCGTGTTCTTCAAGGCCAG 59.467 52.381 5.01 0.00 0.00 4.85
983 1022 1.645034 CATGGTTGCCGAGTAGTCAG 58.355 55.000 0.00 0.00 0.00 3.51
984 1023 0.249120 CCATGGTTGCCGAGTAGTCA 59.751 55.000 2.57 0.00 0.00 3.41
985 1024 1.090052 GCCATGGTTGCCGAGTAGTC 61.090 60.000 14.67 0.00 0.00 2.59
1089 1128 1.961277 CGTCTTGCCAAAGCGGAGT 60.961 57.895 0.00 0.00 44.31 3.85
1115 1154 3.699894 CAGAGTGGCCGGAGTGCT 61.700 66.667 5.05 0.00 0.00 4.40
1137 1176 1.079612 GCATGGGGCAGAAGCAAAC 60.080 57.895 0.00 0.00 44.61 2.93
1149 1188 7.944061 TCATTATCACAAGAAAATAGCATGGG 58.056 34.615 0.00 0.00 0.00 4.00
1156 1195 7.121020 TGTGCAGCTCATTATCACAAGAAAATA 59.879 33.333 0.00 0.00 35.08 1.40
1157 1196 6.071784 TGTGCAGCTCATTATCACAAGAAAAT 60.072 34.615 0.00 0.00 35.08 1.82
1158 1197 5.241285 TGTGCAGCTCATTATCACAAGAAAA 59.759 36.000 0.00 0.00 35.08 2.29
1159 1198 4.761227 TGTGCAGCTCATTATCACAAGAAA 59.239 37.500 0.00 0.00 35.08 2.52
1160 1199 4.325972 TGTGCAGCTCATTATCACAAGAA 58.674 39.130 0.00 0.00 35.08 2.52
1182 1226 2.037053 CGATCTGCTCGGTGGATCT 58.963 57.895 0.00 0.00 43.82 2.75
1183 1227 4.643733 CGATCTGCTCGGTGGATC 57.356 61.111 0.00 0.00 43.82 3.36
1189 1233 4.092821 TTGTTAACAAATCGATCTGCTCGG 59.907 41.667 18.54 0.00 39.25 4.63
1190 1234 5.203358 TTGTTAACAAATCGATCTGCTCG 57.797 39.130 18.54 0.00 39.73 5.03
1214 1258 7.523709 GCCTTTTGGAGAACATAACAAGATCAA 60.524 37.037 0.00 0.00 44.07 2.57
1282 1329 2.896443 GCTAAGCGCCTCCTCTGT 59.104 61.111 2.29 0.00 0.00 3.41
1359 1406 1.674359 TTTCAGCTTTCAGGACGCAA 58.326 45.000 0.00 0.00 0.00 4.85
1381 1428 2.714530 GACTGAACGAGTCGCTGAC 58.285 57.895 13.59 2.26 41.91 3.51
1396 1443 4.719369 GACGCGGCGTGGAAGACT 62.719 66.667 34.44 4.92 41.37 3.24
1409 1456 2.202756 CTGGTTAGCTCCCGACGC 60.203 66.667 0.00 0.00 0.00 5.19
1412 1459 1.271840 ATTGCCTGGTTAGCTCCCGA 61.272 55.000 0.00 0.00 0.00 5.14
1413 1460 0.394352 AATTGCCTGGTTAGCTCCCG 60.394 55.000 0.00 0.00 0.00 5.14
1414 1461 1.393603 GAATTGCCTGGTTAGCTCCC 58.606 55.000 0.00 0.00 0.00 4.30
1464 1511 0.617413 TCCTCGAGTACCCGAACTCT 59.383 55.000 12.31 0.00 43.11 3.24
1555 1602 6.824305 TTTTGCTAGGGAAATCAAGAAGAG 57.176 37.500 0.00 0.00 0.00 2.85
1558 1605 5.600484 TGGTTTTTGCTAGGGAAATCAAGAA 59.400 36.000 0.00 0.00 0.00 2.52
1563 1610 3.258123 TGCTGGTTTTTGCTAGGGAAATC 59.742 43.478 0.00 0.00 0.00 2.17
1569 1616 0.109597 CGCTGCTGGTTTTTGCTAGG 60.110 55.000 0.00 0.00 0.00 3.02
1594 1644 2.421424 AGCTTCTTCATCGATGGCAAAC 59.579 45.455 24.61 10.48 0.00 2.93
1614 1664 6.592798 TTAGGTTCACGTAAAAACAGACAG 57.407 37.500 9.12 0.00 0.00 3.51
1615 1665 6.203338 GGATTAGGTTCACGTAAAAACAGACA 59.797 38.462 9.12 0.00 31.18 3.41
1617 1667 6.425721 CAGGATTAGGTTCACGTAAAAACAGA 59.574 38.462 9.12 0.00 31.18 3.41
1618 1668 6.425721 TCAGGATTAGGTTCACGTAAAAACAG 59.574 38.462 9.12 0.00 31.18 3.16
1619 1669 6.289834 TCAGGATTAGGTTCACGTAAAAACA 58.710 36.000 9.12 0.00 31.18 2.83
1620 1670 6.790285 TCAGGATTAGGTTCACGTAAAAAC 57.210 37.500 0.00 0.00 31.18 2.43
1628 1685 4.386867 TCGTGATCAGGATTAGGTTCAC 57.613 45.455 13.94 0.00 0.00 3.18
1647 1704 2.025418 CGGTCAGGGAACGGTTTCG 61.025 63.158 0.00 0.00 39.28 3.46
1648 1705 3.961729 CGGTCAGGGAACGGTTTC 58.038 61.111 0.00 0.00 39.28 2.78
1654 1711 4.980805 TGCGCACGGTCAGGGAAC 62.981 66.667 5.66 0.00 0.00 3.62
1864 1921 0.874175 TTGAACGTCGTGTGCCTCAG 60.874 55.000 0.00 0.00 0.00 3.35
1865 1922 0.874175 CTTGAACGTCGTGTGCCTCA 60.874 55.000 0.00 0.00 0.00 3.86
1867 1924 1.143183 ACTTGAACGTCGTGTGCCT 59.857 52.632 0.00 0.00 0.00 4.75
1868 1925 1.275657 CACTTGAACGTCGTGTGCC 59.724 57.895 0.00 0.00 0.00 5.01
1869 1926 2.003672 ACACTTGAACGTCGTGTGC 58.996 52.632 12.08 0.77 40.11 4.57
1873 1930 1.836383 GACTCACACTTGAACGTCGT 58.164 50.000 0.00 0.00 0.00 4.34
1874 1931 0.770590 CGACTCACACTTGAACGTCG 59.229 55.000 0.00 0.00 41.34 5.12
1875 1932 1.517276 CACGACTCACACTTGAACGTC 59.483 52.381 0.00 0.00 40.47 4.34
1877 1934 1.517276 GTCACGACTCACACTTGAACG 59.483 52.381 0.00 0.00 37.51 3.95
1879 1936 2.481276 CCAGTCACGACTCACACTTGAA 60.481 50.000 0.00 0.00 40.20 2.69
1880 1937 1.067060 CCAGTCACGACTCACACTTGA 59.933 52.381 0.00 0.00 40.20 3.02
1881 1938 1.491670 CCAGTCACGACTCACACTTG 58.508 55.000 0.00 0.00 40.20 3.16
1884 1941 0.597637 CACCCAGTCACGACTCACAC 60.598 60.000 0.00 0.00 40.20 3.82
1900 1966 3.649073 GAAAACAGTTAATGGTGGCACC 58.351 45.455 29.75 29.75 39.22 5.01
2027 2095 2.932614 CGTCTTCCTGTTGATGGTGATC 59.067 50.000 0.00 0.00 0.00 2.92
2114 2182 3.492383 CGATGCAAGCTATCCTAACAGTG 59.508 47.826 0.00 0.00 0.00 3.66
2115 2183 3.384789 TCGATGCAAGCTATCCTAACAGT 59.615 43.478 0.00 0.00 0.00 3.55
2234 2303 6.085555 TCCATGTGAATCTCGGTACTATTC 57.914 41.667 0.00 0.00 0.00 1.75
2280 2349 6.082338 CACAATATCTCAGTTTTGCTGTCAC 58.918 40.000 0.00 0.00 45.23 3.67
2286 2355 5.858581 GGTTCACACAATATCTCAGTTTTGC 59.141 40.000 0.00 0.00 0.00 3.68
2294 2363 6.260936 CCATAGGTTGGTTCACACAATATCTC 59.739 42.308 0.00 0.00 40.99 2.75
2296 2365 6.377327 CCATAGGTTGGTTCACACAATATC 57.623 41.667 0.00 0.00 40.99 1.63
2309 2378 4.644685 CCAAGTATCCAAACCATAGGTTGG 59.355 45.833 0.84 0.84 46.20 3.77
2310 2379 5.505780 TCCAAGTATCCAAACCATAGGTTG 58.494 41.667 1.62 0.00 46.20 3.77
2312 2381 5.994416 ATCCAAGTATCCAAACCATAGGT 57.006 39.130 0.00 0.00 37.65 3.08
2313 2382 8.940397 AAATATCCAAGTATCCAAACCATAGG 57.060 34.615 0.00 0.00 0.00 2.57
2316 2385 8.732854 TCCTAAATATCCAAGTATCCAAACCAT 58.267 33.333 0.00 0.00 0.00 3.55
2317 2386 7.996644 GTCCTAAATATCCAAGTATCCAAACCA 59.003 37.037 0.00 0.00 0.00 3.67
2318 2387 7.172703 CGTCCTAAATATCCAAGTATCCAAACC 59.827 40.741 0.00 0.00 0.00 3.27
2319 2388 7.929785 TCGTCCTAAATATCCAAGTATCCAAAC 59.070 37.037 0.00 0.00 0.00 2.93
2320 2389 7.929785 GTCGTCCTAAATATCCAAGTATCCAAA 59.070 37.037 0.00 0.00 0.00 3.28
2321 2390 7.070198 TGTCGTCCTAAATATCCAAGTATCCAA 59.930 37.037 0.00 0.00 0.00 3.53
2322 2391 6.551975 TGTCGTCCTAAATATCCAAGTATCCA 59.448 38.462 0.00 0.00 0.00 3.41
2323 2392 6.989659 TGTCGTCCTAAATATCCAAGTATCC 58.010 40.000 0.00 0.00 0.00 2.59
2324 2393 8.926710 CATTGTCGTCCTAAATATCCAAGTATC 58.073 37.037 0.00 0.00 0.00 2.24
2325 2394 8.647796 TCATTGTCGTCCTAAATATCCAAGTAT 58.352 33.333 0.00 0.00 0.00 2.12
2326 2395 8.014070 TCATTGTCGTCCTAAATATCCAAGTA 57.986 34.615 0.00 0.00 0.00 2.24
2327 2396 6.884832 TCATTGTCGTCCTAAATATCCAAGT 58.115 36.000 0.00 0.00 0.00 3.16
2328 2397 7.969536 ATCATTGTCGTCCTAAATATCCAAG 57.030 36.000 0.00 0.00 0.00 3.61
2329 2398 9.653287 GATATCATTGTCGTCCTAAATATCCAA 57.347 33.333 0.00 0.00 0.00 3.53
2330 2399 9.035890 AGATATCATTGTCGTCCTAAATATCCA 57.964 33.333 5.32 0.00 0.00 3.41
2331 2400 9.522804 GAGATATCATTGTCGTCCTAAATATCC 57.477 37.037 5.32 0.00 0.00 2.59
2332 2401 9.522804 GGAGATATCATTGTCGTCCTAAATATC 57.477 37.037 5.32 0.00 0.00 1.63
2333 2402 8.191446 CGGAGATATCATTGTCGTCCTAAATAT 58.809 37.037 5.32 0.00 0.00 1.28
2334 2403 7.362660 CCGGAGATATCATTGTCGTCCTAAATA 60.363 40.741 5.32 0.00 0.00 1.40
2335 2404 6.390721 CGGAGATATCATTGTCGTCCTAAAT 58.609 40.000 5.32 0.00 0.00 1.40
2336 2405 5.278808 CCGGAGATATCATTGTCGTCCTAAA 60.279 44.000 5.32 0.00 0.00 1.85
2337 2406 4.217767 CCGGAGATATCATTGTCGTCCTAA 59.782 45.833 5.32 0.00 0.00 2.69
2338 2407 3.756963 CCGGAGATATCATTGTCGTCCTA 59.243 47.826 5.32 0.00 0.00 2.94
2339 2408 2.558795 CCGGAGATATCATTGTCGTCCT 59.441 50.000 5.32 0.00 0.00 3.85
2340 2409 2.296471 ACCGGAGATATCATTGTCGTCC 59.704 50.000 9.46 0.25 0.00 4.79
2341 2410 3.566523 GACCGGAGATATCATTGTCGTC 58.433 50.000 9.46 0.00 0.00 4.20
2342 2411 2.296471 GGACCGGAGATATCATTGTCGT 59.704 50.000 9.46 0.00 0.00 4.34
2343 2412 2.296190 TGGACCGGAGATATCATTGTCG 59.704 50.000 9.46 1.45 0.00 4.35
2344 2413 4.021104 TGATGGACCGGAGATATCATTGTC 60.021 45.833 9.46 5.92 0.00 3.18
2345 2414 3.903714 TGATGGACCGGAGATATCATTGT 59.096 43.478 9.46 0.00 0.00 2.71
2346 2415 4.502016 CTGATGGACCGGAGATATCATTG 58.498 47.826 9.46 0.00 0.00 2.82
2347 2416 3.517100 CCTGATGGACCGGAGATATCATT 59.483 47.826 9.46 0.00 34.57 2.57
2348 2417 3.102972 CCTGATGGACCGGAGATATCAT 58.897 50.000 9.46 1.92 34.57 2.45
2349 2418 2.529632 CCTGATGGACCGGAGATATCA 58.470 52.381 9.46 11.48 34.57 2.15
2350 2419 1.827969 CCCTGATGGACCGGAGATATC 59.172 57.143 9.46 7.12 35.39 1.63
2351 2420 1.150135 ACCCTGATGGACCGGAGATAT 59.850 52.381 9.46 0.00 38.00 1.63
2352 2421 0.561184 ACCCTGATGGACCGGAGATA 59.439 55.000 9.46 0.00 38.00 1.98
2353 2422 0.326618 AACCCTGATGGACCGGAGAT 60.327 55.000 9.46 0.00 38.00 2.75
2354 2423 0.976073 GAACCCTGATGGACCGGAGA 60.976 60.000 9.46 0.00 38.00 3.71
2355 2424 1.264749 TGAACCCTGATGGACCGGAG 61.265 60.000 9.46 0.00 38.00 4.63
2356 2425 0.838554 TTGAACCCTGATGGACCGGA 60.839 55.000 9.46 0.00 38.00 5.14
2357 2426 0.037590 TTTGAACCCTGATGGACCGG 59.962 55.000 0.00 0.00 38.00 5.28
2358 2427 2.017049 GATTTGAACCCTGATGGACCG 58.983 52.381 0.00 0.00 38.00 4.79
2359 2428 2.024941 AGGATTTGAACCCTGATGGACC 60.025 50.000 0.00 0.00 38.00 4.46
2360 2429 3.372440 AGGATTTGAACCCTGATGGAC 57.628 47.619 0.00 0.00 38.00 4.02
2361 2430 3.075882 ACAAGGATTTGAACCCTGATGGA 59.924 43.478 0.00 0.00 37.73 3.41
2362 2431 3.194116 CACAAGGATTTGAACCCTGATGG 59.806 47.826 0.00 0.00 37.73 3.51
2363 2432 3.367703 GCACAAGGATTTGAACCCTGATG 60.368 47.826 0.00 0.00 37.73 3.07
2364 2433 2.827921 GCACAAGGATTTGAACCCTGAT 59.172 45.455 0.00 0.00 37.73 2.90
2365 2434 2.158475 AGCACAAGGATTTGAACCCTGA 60.158 45.455 0.00 0.00 37.73 3.86
2366 2435 2.229784 GAGCACAAGGATTTGAACCCTG 59.770 50.000 0.00 0.00 37.73 4.45
2367 2436 2.519013 GAGCACAAGGATTTGAACCCT 58.481 47.619 0.00 0.00 37.73 4.34
2368 2437 1.200020 CGAGCACAAGGATTTGAACCC 59.800 52.381 0.00 0.00 37.73 4.11
2369 2438 1.401539 GCGAGCACAAGGATTTGAACC 60.402 52.381 0.00 0.00 37.73 3.62
2370 2439 1.266718 TGCGAGCACAAGGATTTGAAC 59.733 47.619 0.00 0.00 37.73 3.18
2371 2440 1.603456 TGCGAGCACAAGGATTTGAA 58.397 45.000 0.00 0.00 37.73 2.69
2372 2441 1.825090 ATGCGAGCACAAGGATTTGA 58.175 45.000 0.00 0.00 37.73 2.69
2373 2442 2.642139 AATGCGAGCACAAGGATTTG 57.358 45.000 0.00 0.00 40.24 2.32
2374 2443 4.202050 GGATAAATGCGAGCACAAGGATTT 60.202 41.667 0.00 0.00 40.54 2.17
2375 2444 3.316308 GGATAAATGCGAGCACAAGGATT 59.684 43.478 0.00 0.00 0.00 3.01
2376 2445 2.880890 GGATAAATGCGAGCACAAGGAT 59.119 45.455 0.00 0.00 0.00 3.24
2377 2446 2.092968 AGGATAAATGCGAGCACAAGGA 60.093 45.455 0.00 0.00 0.00 3.36
2378 2447 2.032550 CAGGATAAATGCGAGCACAAGG 59.967 50.000 0.00 0.00 0.00 3.61
2379 2448 2.032550 CCAGGATAAATGCGAGCACAAG 59.967 50.000 0.00 0.00 0.00 3.16
2380 2449 2.016318 CCAGGATAAATGCGAGCACAA 58.984 47.619 0.00 0.00 0.00 3.33
2381 2450 1.209261 TCCAGGATAAATGCGAGCACA 59.791 47.619 0.00 0.00 0.00 4.57
2382 2451 1.953559 TCCAGGATAAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
2383 2452 2.936919 ATCCAGGATAAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
2384 2453 5.886960 ATAAATCCAGGATAAATGCGAGC 57.113 39.130 1.02 0.00 0.00 5.03
2395 2464 9.665719 GCCAGAAATTTTAAAATAAATCCAGGA 57.334 29.630 13.68 0.00 0.00 3.86
2396 2465 8.603181 CGCCAGAAATTTTAAAATAAATCCAGG 58.397 33.333 13.68 15.42 0.00 4.45
2397 2466 9.364989 TCGCCAGAAATTTTAAAATAAATCCAG 57.635 29.630 13.68 8.19 0.00 3.86
2398 2467 9.883142 ATCGCCAGAAATTTTAAAATAAATCCA 57.117 25.926 13.68 0.00 0.00 3.41
2421 2490 0.852777 CTCCCATTGAACGCGTATCG 59.147 55.000 14.46 0.00 45.38 2.92
2422 2491 1.202486 TCCTCCCATTGAACGCGTATC 60.202 52.381 14.46 13.20 0.00 2.24
2423 2492 0.828022 TCCTCCCATTGAACGCGTAT 59.172 50.000 14.46 0.00 0.00 3.06
2424 2493 0.174845 CTCCTCCCATTGAACGCGTA 59.825 55.000 14.46 0.00 0.00 4.42
2425 2494 1.079127 CTCCTCCCATTGAACGCGT 60.079 57.895 5.58 5.58 0.00 6.01
2426 2495 1.084370 GTCTCCTCCCATTGAACGCG 61.084 60.000 3.53 3.53 0.00 6.01
2427 2496 1.084370 CGTCTCCTCCCATTGAACGC 61.084 60.000 0.00 0.00 0.00 4.84
2428 2497 0.246635 ACGTCTCCTCCCATTGAACG 59.753 55.000 0.00 0.00 0.00 3.95
2429 2498 2.474410 AACGTCTCCTCCCATTGAAC 57.526 50.000 0.00 0.00 0.00 3.18
2430 2499 3.146066 CAAAACGTCTCCTCCCATTGAA 58.854 45.455 0.00 0.00 0.00 2.69
2431 2500 2.552155 CCAAAACGTCTCCTCCCATTGA 60.552 50.000 0.00 0.00 0.00 2.57
2432 2501 1.812571 CCAAAACGTCTCCTCCCATTG 59.187 52.381 0.00 0.00 0.00 2.82
2433 2502 1.423921 ACCAAAACGTCTCCTCCCATT 59.576 47.619 0.00 0.00 0.00 3.16
2434 2503 1.003233 GACCAAAACGTCTCCTCCCAT 59.997 52.381 0.00 0.00 0.00 4.00
2435 2504 0.395312 GACCAAAACGTCTCCTCCCA 59.605 55.000 0.00 0.00 0.00 4.37
2436 2505 0.669625 CGACCAAAACGTCTCCTCCC 60.670 60.000 0.00 0.00 0.00 4.30
2437 2506 0.316204 TCGACCAAAACGTCTCCTCC 59.684 55.000 0.00 0.00 0.00 4.30
2438 2507 1.000496 AGTCGACCAAAACGTCTCCTC 60.000 52.381 13.01 0.00 0.00 3.71
2439 2508 1.038280 AGTCGACCAAAACGTCTCCT 58.962 50.000 13.01 0.00 0.00 3.69
2440 2509 2.323059 GTAGTCGACCAAAACGTCTCC 58.677 52.381 13.01 0.00 32.52 3.71
2441 2510 1.974680 CGTAGTCGACCAAAACGTCTC 59.025 52.381 13.01 0.00 39.71 3.36
2442 2511 1.603802 TCGTAGTCGACCAAAACGTCT 59.396 47.619 21.73 2.65 41.35 4.18
2443 2512 2.036556 TCGTAGTCGACCAAAACGTC 57.963 50.000 21.73 3.30 41.35 4.34
2453 2522 0.573987 CATAGACGCGTCGTAGTCGA 59.426 55.000 31.56 13.43 42.49 4.20
2454 2523 0.985902 GCATAGACGCGTCGTAGTCG 60.986 60.000 31.56 18.90 41.37 4.18
2455 2524 0.304098 AGCATAGACGCGTCGTAGTC 59.696 55.000 31.56 20.32 41.37 2.59
2456 2525 0.027716 CAGCATAGACGCGTCGTAGT 59.972 55.000 31.56 18.01 41.37 2.73
2457 2526 0.303796 TCAGCATAGACGCGTCGTAG 59.696 55.000 31.56 24.47 41.37 3.51
2458 2527 0.027194 GTCAGCATAGACGCGTCGTA 59.973 55.000 31.56 23.28 41.37 3.43
2459 2528 1.226323 GTCAGCATAGACGCGTCGT 60.226 57.895 31.56 22.10 45.10 4.34
2460 2529 0.523546 AAGTCAGCATAGACGCGTCG 60.524 55.000 31.56 19.63 43.24 5.12
2461 2530 1.192793 GAAGTCAGCATAGACGCGTC 58.807 55.000 31.30 31.30 43.24 5.19
2462 2531 0.523546 CGAAGTCAGCATAGACGCGT 60.524 55.000 13.85 13.85 43.24 6.01
2463 2532 0.523546 ACGAAGTCAGCATAGACGCG 60.524 55.000 3.53 3.53 43.24 6.01
2464 2533 2.470196 TACGAAGTCAGCATAGACGC 57.530 50.000 0.00 0.00 43.93 5.19
2465 2534 5.744345 AGATTTTACGAAGTCAGCATAGACG 59.256 40.000 0.00 0.00 43.93 4.18
2466 2535 6.752351 TGAGATTTTACGAAGTCAGCATAGAC 59.248 38.462 0.00 0.00 43.93 2.59
2467 2536 6.863275 TGAGATTTTACGAAGTCAGCATAGA 58.137 36.000 0.00 0.00 43.93 1.98
2468 2537 7.489435 TCTTGAGATTTTACGAAGTCAGCATAG 59.511 37.037 0.00 0.00 43.93 2.23
2469 2538 7.320399 TCTTGAGATTTTACGAAGTCAGCATA 58.680 34.615 0.00 0.00 43.93 3.14
2470 2539 6.166279 TCTTGAGATTTTACGAAGTCAGCAT 58.834 36.000 0.00 0.00 43.93 3.79
2471 2540 5.538118 TCTTGAGATTTTACGAAGTCAGCA 58.462 37.500 0.00 0.00 43.93 4.41
2472 2541 6.311445 TCATCTTGAGATTTTACGAAGTCAGC 59.689 38.462 0.00 0.00 35.39 4.26
2473 2542 7.818493 TCATCTTGAGATTTTACGAAGTCAG 57.182 36.000 0.00 0.00 35.39 3.51
2476 2545 8.768955 GCATATCATCTTGAGATTTTACGAAGT 58.231 33.333 0.00 0.00 37.29 3.01
2477 2546 8.226448 GGCATATCATCTTGAGATTTTACGAAG 58.774 37.037 0.00 0.00 31.21 3.79
2478 2547 7.095649 CGGCATATCATCTTGAGATTTTACGAA 60.096 37.037 0.00 0.00 31.21 3.85
2479 2548 6.366061 CGGCATATCATCTTGAGATTTTACGA 59.634 38.462 0.00 0.00 31.21 3.43
2480 2549 6.528826 CGGCATATCATCTTGAGATTTTACG 58.471 40.000 0.00 0.00 31.21 3.18
2481 2550 6.310197 GCGGCATATCATCTTGAGATTTTAC 58.690 40.000 0.00 0.00 31.21 2.01
2482 2551 5.412594 GGCGGCATATCATCTTGAGATTTTA 59.587 40.000 3.07 0.00 31.21 1.52
2483 2552 4.217118 GGCGGCATATCATCTTGAGATTTT 59.783 41.667 3.07 0.00 31.21 1.82
2484 2553 3.755378 GGCGGCATATCATCTTGAGATTT 59.245 43.478 3.07 0.00 31.21 2.17
2485 2554 3.008813 AGGCGGCATATCATCTTGAGATT 59.991 43.478 13.08 0.00 31.21 2.40
2486 2555 2.570752 AGGCGGCATATCATCTTGAGAT 59.429 45.455 13.08 0.00 34.56 2.75
2487 2556 1.973515 AGGCGGCATATCATCTTGAGA 59.026 47.619 13.08 0.00 0.00 3.27
2488 2557 2.289257 TGAGGCGGCATATCATCTTGAG 60.289 50.000 13.08 0.00 0.00 3.02
2489 2558 1.693606 TGAGGCGGCATATCATCTTGA 59.306 47.619 13.08 0.00 0.00 3.02
2490 2559 2.074576 CTGAGGCGGCATATCATCTTG 58.925 52.381 13.08 0.00 0.00 3.02
2491 2560 1.696336 ACTGAGGCGGCATATCATCTT 59.304 47.619 13.08 0.00 0.00 2.40
2492 2561 1.001746 CACTGAGGCGGCATATCATCT 59.998 52.381 13.08 0.00 0.00 2.90
2493 2562 1.270518 ACACTGAGGCGGCATATCATC 60.271 52.381 13.08 0.00 0.00 2.92
2494 2563 0.761187 ACACTGAGGCGGCATATCAT 59.239 50.000 13.08 0.00 0.00 2.45
2495 2564 0.104855 GACACTGAGGCGGCATATCA 59.895 55.000 13.08 5.39 0.00 2.15
2496 2565 0.390860 AGACACTGAGGCGGCATATC 59.609 55.000 13.08 0.00 0.00 1.63
2497 2566 0.390860 GAGACACTGAGGCGGCATAT 59.609 55.000 13.08 0.00 0.00 1.78
2498 2567 1.816537 GAGACACTGAGGCGGCATA 59.183 57.895 13.08 0.00 0.00 3.14
2499 2568 2.581354 GAGACACTGAGGCGGCAT 59.419 61.111 13.08 0.00 0.00 4.40
2500 2569 4.056125 CGAGACACTGAGGCGGCA 62.056 66.667 13.08 0.00 0.00 5.69
2501 2570 3.282745 TTCGAGACACTGAGGCGGC 62.283 63.158 0.00 0.00 0.00 6.53
2502 2571 1.153939 CTTCGAGACACTGAGGCGG 60.154 63.158 0.00 0.00 0.00 6.13
2503 2572 1.153939 CCTTCGAGACACTGAGGCG 60.154 63.158 0.00 0.00 0.00 5.52
2504 2573 1.135344 GTACCTTCGAGACACTGAGGC 60.135 57.143 0.00 0.00 0.00 4.70
2505 2574 2.438411 AGTACCTTCGAGACACTGAGG 58.562 52.381 0.00 0.00 0.00 3.86
2506 2575 5.821516 ATAAGTACCTTCGAGACACTGAG 57.178 43.478 0.00 0.00 0.00 3.35
2507 2576 6.175471 TGTATAAGTACCTTCGAGACACTGA 58.825 40.000 0.00 0.00 0.00 3.41
2508 2577 6.432607 TGTATAAGTACCTTCGAGACACTG 57.567 41.667 0.00 0.00 0.00 3.66
2509 2578 5.589452 CCTGTATAAGTACCTTCGAGACACT 59.411 44.000 0.00 0.00 0.00 3.55
2510 2579 5.732810 GCCTGTATAAGTACCTTCGAGACAC 60.733 48.000 0.00 0.00 0.00 3.67
2511 2580 4.337555 GCCTGTATAAGTACCTTCGAGACA 59.662 45.833 0.00 0.00 0.00 3.41
2512 2581 4.337555 TGCCTGTATAAGTACCTTCGAGAC 59.662 45.833 0.00 0.00 0.00 3.36
2513 2582 4.529897 TGCCTGTATAAGTACCTTCGAGA 58.470 43.478 0.00 0.00 0.00 4.04
2514 2583 4.579340 TCTGCCTGTATAAGTACCTTCGAG 59.421 45.833 0.00 0.00 0.00 4.04
2515 2584 4.529897 TCTGCCTGTATAAGTACCTTCGA 58.470 43.478 0.00 0.00 0.00 3.71
2516 2585 4.338682 ACTCTGCCTGTATAAGTACCTTCG 59.661 45.833 0.00 0.00 0.00 3.79
2517 2586 5.855740 ACTCTGCCTGTATAAGTACCTTC 57.144 43.478 0.00 0.00 0.00 3.46
2518 2587 7.729124 TTTACTCTGCCTGTATAAGTACCTT 57.271 36.000 0.00 0.00 0.00 3.50
2519 2588 7.916077 ATTTACTCTGCCTGTATAAGTACCT 57.084 36.000 0.00 0.00 0.00 3.08
2520 2589 7.041984 GCAATTTACTCTGCCTGTATAAGTACC 60.042 40.741 0.00 0.00 32.18 3.34
2521 2590 7.494625 TGCAATTTACTCTGCCTGTATAAGTAC 59.505 37.037 0.00 0.00 37.79 2.73
2522 2591 7.561251 TGCAATTTACTCTGCCTGTATAAGTA 58.439 34.615 0.00 0.00 37.79 2.24
2523 2592 6.414732 TGCAATTTACTCTGCCTGTATAAGT 58.585 36.000 0.00 0.00 37.79 2.24
2524 2593 6.925610 TGCAATTTACTCTGCCTGTATAAG 57.074 37.500 0.00 0.00 37.79 1.73
2525 2594 7.109501 TCTTGCAATTTACTCTGCCTGTATAA 58.890 34.615 0.00 0.00 37.79 0.98
2526 2595 6.649155 TCTTGCAATTTACTCTGCCTGTATA 58.351 36.000 0.00 0.00 37.79 1.47
2527 2596 5.500234 TCTTGCAATTTACTCTGCCTGTAT 58.500 37.500 0.00 0.00 37.79 2.29
2528 2597 4.905429 TCTTGCAATTTACTCTGCCTGTA 58.095 39.130 0.00 0.00 37.79 2.74
2529 2598 3.754965 TCTTGCAATTTACTCTGCCTGT 58.245 40.909 0.00 0.00 37.79 4.00
2530 2599 4.771590 TTCTTGCAATTTACTCTGCCTG 57.228 40.909 0.00 0.00 37.79 4.85
2531 2600 4.021981 GGTTTCTTGCAATTTACTCTGCCT 60.022 41.667 0.00 0.00 37.79 4.75
2532 2601 4.237724 GGTTTCTTGCAATTTACTCTGCC 58.762 43.478 0.00 0.00 37.79 4.85
2533 2602 4.681483 GTGGTTTCTTGCAATTTACTCTGC 59.319 41.667 0.00 0.00 39.09 4.26
2534 2603 5.221224 TGGTGGTTTCTTGCAATTTACTCTG 60.221 40.000 0.00 0.00 0.00 3.35
2535 2604 4.892934 TGGTGGTTTCTTGCAATTTACTCT 59.107 37.500 0.00 0.00 0.00 3.24
2536 2605 5.195001 TGGTGGTTTCTTGCAATTTACTC 57.805 39.130 0.00 0.00 0.00 2.59
2537 2606 4.649218 ACTGGTGGTTTCTTGCAATTTACT 59.351 37.500 0.00 0.00 0.00 2.24
2538 2607 4.944048 ACTGGTGGTTTCTTGCAATTTAC 58.056 39.130 0.00 0.00 0.00 2.01
2559 2628 3.751518 TCTGAAACCCTAGCCTTCAAAC 58.248 45.455 0.00 0.00 0.00 2.93
2565 2634 3.138468 AGTGTTTTCTGAAACCCTAGCCT 59.862 43.478 1.58 0.00 43.57 4.58
2572 2641 6.036408 ACTGTAACGTAGTGTTTTCTGAAACC 59.964 38.462 1.58 0.00 45.00 3.27
2573 2642 6.997222 ACTGTAACGTAGTGTTTTCTGAAAC 58.003 36.000 1.58 0.00 45.00 2.78
2576 2645 7.599630 AAAACTGTAACGTAGTGTTTTCTGA 57.400 32.000 12.56 0.00 45.00 3.27
2596 2665 3.105937 GTGGTGCTTTCTGTCGAAAAAC 58.894 45.455 0.00 0.00 38.58 2.43
2598 2667 2.360844 TGTGGTGCTTTCTGTCGAAAA 58.639 42.857 0.00 0.00 38.58 2.29
2602 2671 1.800805 AGATGTGGTGCTTTCTGTCG 58.199 50.000 0.00 0.00 0.00 4.35
2618 2687 9.410556 GTTATTTGCAACAAGATTACACAAGAT 57.589 29.630 0.00 0.00 0.00 2.40
2620 2689 8.479280 GTGTTATTTGCAACAAGATTACACAAG 58.521 33.333 18.96 0.00 39.98 3.16
2622 2691 7.647318 CAGTGTTATTTGCAACAAGATTACACA 59.353 33.333 22.90 8.18 39.98 3.72
2626 2695 8.028354 CCATCAGTGTTATTTGCAACAAGATTA 58.972 33.333 0.00 0.00 39.98 1.75
2627 2696 6.869913 CCATCAGTGTTATTTGCAACAAGATT 59.130 34.615 0.00 0.00 39.98 2.40
2651 2720 0.178068 TAAAGTGCTCTGATCCGCCC 59.822 55.000 0.00 0.00 0.00 6.13
2653 2722 2.622436 ACTTAAAGTGCTCTGATCCGC 58.378 47.619 0.00 0.00 0.00 5.54
2659 2728 8.935844 TGTCATAAACATACTTAAAGTGCTCTG 58.064 33.333 0.00 0.00 31.20 3.35
2663 2732 9.329913 CACTTGTCATAAACATACTTAAAGTGC 57.670 33.333 0.00 0.00 37.82 4.40
2670 2739 6.779860 AGACCCACTTGTCATAAACATACTT 58.220 36.000 0.00 0.00 37.82 2.24
2676 2745 7.923414 AAATCTAGACCCACTTGTCATAAAC 57.077 36.000 0.00 0.00 37.73 2.01
2686 2755 1.906574 TCGGCAAAATCTAGACCCACT 59.093 47.619 0.00 0.00 0.00 4.00
2689 2758 1.287425 CGTCGGCAAAATCTAGACCC 58.713 55.000 0.00 0.00 0.00 4.46
2705 2774 1.622269 CGATTCGTTACGCCACGTC 59.378 57.895 0.00 0.00 41.54 4.34
2726 2795 1.015109 TAGACTCTGACGCCATCGAC 58.985 55.000 0.00 0.00 39.41 4.20
2727 2796 1.015109 GTAGACTCTGACGCCATCGA 58.985 55.000 0.00 0.00 39.41 3.59
2728 2797 0.733150 TGTAGACTCTGACGCCATCG 59.267 55.000 0.00 0.00 42.43 3.84
2731 2800 0.817654 CCATGTAGACTCTGACGCCA 59.182 55.000 0.00 0.00 0.00 5.69
2734 2803 1.405821 GGTCCCATGTAGACTCTGACG 59.594 57.143 11.62 0.00 34.56 4.35
2744 2813 0.251877 TGACAGGTCGGTCCCATGTA 60.252 55.000 0.00 0.00 36.97 2.29
2752 2821 1.194781 ATTCCAGCTGACAGGTCGGT 61.195 55.000 17.39 1.00 38.23 4.69
2755 2824 2.027745 TGAAGATTCCAGCTGACAGGTC 60.028 50.000 17.39 5.84 0.00 3.85
2760 2829 5.221009 GGATGAATTGAAGATTCCAGCTGAC 60.221 44.000 17.39 3.68 0.00 3.51
2766 2835 8.426569 AGAAAAAGGATGAATTGAAGATTCCA 57.573 30.769 0.00 0.00 0.00 3.53
2770 2839 7.362401 CGGTGAGAAAAAGGATGAATTGAAGAT 60.362 37.037 0.00 0.00 0.00 2.40
2776 2845 4.662278 TCCGGTGAGAAAAAGGATGAATT 58.338 39.130 0.00 0.00 0.00 2.17
2793 2862 1.490910 GATCAGGGAGGAATTTCCGGT 59.509 52.381 9.77 0.00 42.75 5.28
2795 2864 1.202818 GGGATCAGGGAGGAATTTCCG 60.203 57.143 9.77 0.00 42.75 4.30
2796 2865 1.145945 GGGGATCAGGGAGGAATTTCC 59.854 57.143 7.39 7.39 36.58 3.13
2887 2981 2.547123 TAGAGGGAGGGTTGGGCTCC 62.547 65.000 0.00 0.00 36.58 4.70
2890 2984 1.307084 AGTAGAGGGAGGGTTGGGC 60.307 63.158 0.00 0.00 0.00 5.36
2895 2989 1.298157 GGGAGGAGTAGAGGGAGGGT 61.298 65.000 0.00 0.00 0.00 4.34
2915 3009 1.531840 ATAGTCGATCCAGGCGGCT 60.532 57.895 5.25 5.25 46.46 5.52
2923 3017 3.106407 GCGCGGCATAGTCGATCC 61.106 66.667 8.83 0.00 29.41 3.36
2968 3066 3.197790 CTTGGCGCTCGTCCATGG 61.198 66.667 7.64 4.97 32.92 3.66
2969 3067 2.930385 ATCCTTGGCGCTCGTCCATG 62.930 60.000 7.64 0.00 32.92 3.66
2970 3068 2.735772 ATCCTTGGCGCTCGTCCAT 61.736 57.895 7.64 0.00 32.92 3.41
2971 3069 3.390521 ATCCTTGGCGCTCGTCCA 61.391 61.111 7.64 0.00 0.00 4.02
2972 3070 2.892425 CATCCTTGGCGCTCGTCC 60.892 66.667 7.64 0.00 0.00 4.79
2973 3071 3.567797 GCATCCTTGGCGCTCGTC 61.568 66.667 7.64 0.00 0.00 4.20
3016 3114 1.169661 AAGAATTGTCGTTGCGGGCA 61.170 50.000 0.00 0.00 0.00 5.36
3017 3115 0.729140 CAAGAATTGTCGTTGCGGGC 60.729 55.000 0.00 0.00 42.34 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.