>input_sequence_61545
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------------------------------------------------------------------------------AT
GGCGCCAGCAGCCCTGTCCGCCCCCGTCCTTCGCGTCTCTGCCCGCTCGACGGGGACTAGGGCCGCCGCGCCCGCGCCCG
CCGGCGGACTCCGCTTTGGCAAGACGGCTTGCCAGCACTCCGGCCACTCTGGTATGTTTGCTTCTGCCCCATGCTATTTT
CTTGTGA-----TAATGAGCTGCACAGATCCACCGAGCAGATCGATTTGTTAACAAATTGATCTTGTTATGTTCTCCAAA
AGGCCAAGCTGTGCTGCGATCGAAGG---TGCTGCTGAGGCCCGTGGGACAGAGGAGGCGCTTAGCGCTGAGAAGCAGCG
TGGATGACTCCAAAGCCACGGATGACAAGGTCAGCACAGCATGCGTTGCGTCCTGAAAGCTGAAATCGTCAGCGACTCGT
TCAGTCTTCCACGCCGCGTCGGGAGCTAACCAGGCAATTCGCCCGCCCGCCCGCTTGCGTTTCCGCAGGTAGAGTTCGGG
TACTCGAGGAAAGACGTGCTGCTGATCGGCGTCGGCGTCACCCTCCTCGGCTACGGCCTCAAGTCCGGCCTCGAGGTGAC
CCTCTTCTTGATTTCCCTAG---CAAAAACCAGCAGCGGCTCGGTTTGCCATCGATGAAGAAGCTGTCTG-------TTT
TTACGTGAACCTAATCCTGATCACGAAACCGTTCCCTGACCGTGCGCAGTTCGTCGGCGTCGACCCCCTGCAAGCCGGCA
ACGTGGTCCAGCTGTTCATCGTGCTCGGGATGACGGTGGGGTGGATCTCCTCCTACATGATCCGGGTGGCCAACAAGGAC
ATGACCTACGCCACGCAGCTCAGGAACTACGAGAAGCAAGTCATGGAGGTGAGCTAGTGACCCTTTTTGCCACTCTCTGC
CTGAGGCACACGACGTTCAAG---------TGTGAGTCGTGACTGGGTGCCACCATTA--ACTGTTTTCGTTGCAGAAAC
GGCTGGAGAGCCTGTCGGAGGCGGAGCTGCAGGTGCTGCTGGAGCAGGTGGAGGAGGAGAAGGAACGCCTGCCGCCGACG
AGGAGGGATCAGGGGATCACCATCAACAGGAAGACGGAGGATCAGACCACTGCCAACTAA--------------------
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>chr3D_1_TraesCS3D01G325900
TTGCCGGTGACGAAAGGCCCCAGGGAGGCGATCAGCTTCTCGGGGCTGCCGATGTCCTCGATGGTGGCGTTCGGCCTGTT
GGTCAGGCGGATGAGCGGCGAGGCGACTACCTGCACTTTGCCCTGCCTCTCATCCTCGAATTTCACCTCCACCCATGGCT
CCGCGCACTTGGGCTGGCAGTAGTTGCCGGAAAGTATGTTGGCCACTCGCAGCTGCTTCCAGGTGGGCGGCAGGATGAAC
TCGTATGGTTCCACATTGCCTGAATTTCATGA-CAAAACTCAACTCAGCTGACTAATCGACAGCGTGCATCGGGTTGCAA
GATAGGTACTAGCACCAACGAGGAACAATGCATGGAGATGGCTAGAAAGTAC----------------------------
---AGCAAGAATCGAGTGATCACCAGCCCGGAGGGCAGGGGTGTCCTTGGTGCTGGCCTTGAAGAACACGAAGCCCGGGC
TGGACGGCGCCGGCGGCAGGTACTTGCCGGCCTCGACCTCCCGCGCACCAACGGGCAGCGGCGTCGCCGACAACAGCGCG
CCGAGCGCCGTCCCCACCACCAGCTCCCTCCTGTGACTGACAACCGCTAGAGGCGCCGGCTGCGTGGCAGCGGCCGCGCT
GTCCACCGACACAGCGTGGGGAACAGAGGAGCGCGTGGTGACCGAGGCGACGGGCAGCCGGAGGGACGGCCGCAGGAGCG
GGGAGAAGACGGAGGAGGAGGAAGAAGCCAT----GAGCGCGCGAGGGCCACGGGTTCGCGCCCGC-GGGAGGGTCGGAA
GAACGGCCACTCTTATCCAGACGAGTGTGATATTTGGCCTTGTCGACGCGCTCGAGGCATTTTTTGGCCTCGATGTGGCC
AGCTTGTGTACGTGTACGTGTACGGGAGGGGTGCCGGGGACGCGGCTGAGCAGCGCCCCCTCAGTCAGTCAGCACGTCGA
GGATAAGGTGGGATAAA-GGGAGCCAGAGGCGCGGGTGTGCGGCCGAGCAGCAACGGTGGACTGACTACTCGGCAACCAT
GGCGCCAGCAGCCCTGTCCGCCCCCGTCCTTCGCGTCTCTGCCCGCTCGACGGGGACTAGGGCCGCCGCGCCCGCGCCCG
CCGGCGGACTCCGCTTTGGCAAGACGGCTTGCCAGCACTCCGGCCACTCTGGTATGTTTGCTTCTGCCCCATGCTATTTT
CTTGTGA-----TAATGAGCTGCACAGATCCACCGAGCAGATCGATTTGTTAACAAATTGATCTTGTTATGTTCTCCAAA
AGGCCAAGCTGTGCTGCGATCGAAGG---TGCTGCTGAGGCCCGTGGGACAGAGGAGGCGCTTAGCGCTGAGAAGCAGCG
TGGATGACTCCAAAGCCACGGATGACAAGGTCAGCACAGCATGCGTTGCGTCCTGAAAGCTGAAATCGTCAGCGACTCGT
TCAGTCTTCCACGCCGCGTCGGGAGCTAACCAGGCAATTCGCCCGCCCGCCCGCTTGCGTTTCCGCAGGTAGAGTTCGGG
TACTCGAGGAAAGACGTGCTGCTGATCGGCGTCGGCGTCACCCTCCTCGGCTACGGCCTCAAGTCCGGCCTCGAGGTGAC
CCTCTTCTTGATTTCCCTAG---CAAAAACCAGCAGCGGCTCGGTTTGCCATCGATGAAGAAGCTGTCTG-------TTT
TTACGTGAACCTAATCCTGATCACGAAACCGTTCCCTGACCGTGCGCAGTTCGTCGGCGTCGACCCCCTGCAAGCCGGCA
ACGTGGTCCAGCTGTTCATCGTGCTCGGGATGACGGTGGGGTGGATCTCCTCCTACATGATCCGGGTGGCCAACAAGGAC
ATGACCTACGCCACGCAGCTCAGGAACTACGAGAAGCAAGTCATGGAGGTGAGCTAGTGACCCTTTTTGCCACTCTCTGC
CTGAGGCACACGACGTTCAAG---------TGTGAGTCGTGACTGGGTGCCACCATTA--ACTGTTTTCGTTGCAGAAAC
GGCTGGAGAGCCTGTCGGAGGCGGAGCTGCAGGTGCTGCTGGAGCAGGTGGAGGAGGAGAAGGAACGCCTGCCGCCGACG
AGGAGGGATCAGGGGATCACCATCAACAGGAAGACGGAGGATCAGACCACTGCCAACTAATAGCTCCTAGAACACCTCGA
TCATGATATTAGCCCAGTACACACTGTTAGGATAGC-TTGCATCGATTGATTATGGCCTTTCCTTTGTTATAAGAACTCT
GTAGCACAATACTAGTAGTAGTGCTCGTAGCAGCAGCACTGAGTTATACTCCGATCTCCGAAGAATAGTACCGAGATTCA
CATGGATGAACGCGATACATAAATCAACGTGACAGCAAAACTGAGATATTGTGTGAACCAACCTATGGTTTGGATACTTG
GATATTTAGGACGACAATGATATCTCCGGTCCATCAGGGTTCAAATCCTTGTGCTCGCATTTATCCTGGATTTATTTTAA
AATTTCTGGCGATACGCGTTCAATGGGAGGAGACGTTTTGGTCGACTACGACGCGTCTATGCTGACTTCGTAAAATCTCA
AGATGATATGCCGCCTCAGTGTCTCGAAGGTACTTATACAGGCAGAGTAAATTGCAAGAAACCACCAGTTTGAAGGCTAG
GGTTTCAGAAAACACTACGTTACAGTTTTTCGACAGAAAGCACCACATCTTGTGTAATCTTGTTGCAAATAACACTGATG
GGCGGATCAGAGCACTTTAAGTATGTTTATGACAAGTGGGTCTAGATTTTGCCGACGTGGCGTAACGAATCGGCGTCGAT
GGCGTCAGAGTCTACATGGGACCGACCTGTCAGCTGGAATCTTCAATTCATCCTTTTTCTCACCG--GAAATTCCTCCCT
GATCCCCGACGCAG-----------------------CCCACGCCCGATCCCAACTGCCACCACATGGCCGGACTGCGCC
GTGACCGCCGGCGTCGGCGAGGAGCCCAACCCTCCCTCTACTCCTCCCAGCCGCCTGGATCGAC----TATGCCGCGCCA
TGGACGAGCGCCAAGGACGCCGCCGCCATGGACGAGCGCCAAGGATGCCGCCGCCTCGCCGTCGCGGCTACGCTG----C
CCGCAACGACAATTCTTGCGGCCACCGATGGACCGGCGTCGCGCCAATCGCTCG
>chr3B_1
TTGCCGGTGACGAAGGGCCCCAGGGAGGCGATCAGCTTCTCGGGGCTGCCGATGTCCTCGATGGTGGCGTTCGGCCGGTT
GGTCAGGCGGATGAGCGGCGAGGCCACCACCTGCACTTTGCCCTGCCTCTCGTCCTCGAATTTCACCTCCACCCATGGCT
CCGCGCACTTGGGCTGGCAGTAGTTGCCGGACAGTATGTTGGCCACTCGCAGCTGCTTCCAGGTGGGCGGTAGGATGAAC
TCGTAAGGTTCTACATTGCCTGAATTTCATGAGCAAAACTGGACTCAGCTGATGAATCAACAGGGTGCATCAGATTGCAA
GATTGGTA---------------------------------CTAGAAAGTAC----------------------------
---AGCAAGAATCGAGTGATCACCAGCCCGGAGGGCAGGGGTGTCCTTGGTGGTGGCCTTGAAGAACACGAAGCCCGGGC
TGGACGGCGCCGGCGGCAGGTACTTGCCGGCCTCGACCTCGCGCGCCCCTACGGGCAACGTTGTCGCCGAGAACAGCGCG
CCGAGTGCTGTTCCCACCACCAGCTCCCTCCTGTGACTGACAACCGCGAGCGGCGCCGGCTGCGTGGCAGCGGCCGCGTT
GTCCACCGACACAGCGTGGGGAACAGAGGAGCGCGTGGTTACCGACGCGACCGGCAGCCGGAGTGTAGGCCGCAGGAGCG
GGGAGAAGACGGAGGAGGA---AGAAGCCAT----GAGCGCGCGAGGGCCACGGGTTCGCGCGCGCGGGGTGGGTCGGGA
GAACGGCCACTCTTATCCAGACGAGTGTGATATTTGGTCTCGTCGACGCGCTCGCA----TTTTTGGCCTCGATGTGGCG
AGCTTGTGTACGTGTACGTGTACGC------------GGACGCGGCTGAGCAGCGCCCCCTCAGTCAGTTAGCACGTCGA
GGATAAGGTGGGATAAA-GGGAGCCAGAGGCGCGGGTGTGCGGCCGAGCAGCAACGGTGGA---ACTACTCGGCAACCAT
GGCGCCTGCAGCCCTGTCCGCCCCGGTCCTTCGCGTCTCTCCCCGCTCGGCCGGGACTACGGCCACCG---CCGCGCCCG
CCGGCGGTGTCCGCTTCGGCCAGACGGCCTGCCTGCACCCCGGCCACTCTGGTACTTTTGCTTCTGCTCCATGC-----T
CTTGTGA-----CAATGAGCTGCACGAATCCAGTGAGCAGATGGATTTATTAACAAACTGATCTTGTTATGATCTCCGGA
AGCCCAAGCTGTGCTGGGATCGAACGCGCTGCTGCTGAGGCCCGTGGGGCAGAGGAGGCGGTCGGCGCTGAGAAGCAGCG
TGGATGACTCCAAAGCCACGGATGACAAGGTGAGCACAGCATGCGCTGCGTCCC-------GAAATCCTCGGCGACTCGT
TCGGCCTTCCACGACACGCT-GGAGCTAACCAGGCGATTCGCC----CGCCCGCTTGCGTTTCCGCAGGTGGAGTTCGGG
TACTCGAGGAAAGACGTGCTGCTGATCGGCGTCGGCGTCACCCTCCTGGGCTACGGCCTCAAGTCCGGCCTCGAGGTGAC
C-TCCTCTTCATTTCTCTAGTAGCAAAACCCGGCAGCGTCTCAATTTGCCATCGATGAAGAAGAAGAACCCGTCTGTTTT
TCACCTGAACCTGATCACA------AACCCTGTTCCTGACCGCGCGCAGTTCCTCGGCGTCGACCCCCTGCAAGCCGGCA
ACGTGGTCCAGCTGTTCATCGTGCTCGGGATGACGGTGGGGTGGATCTCCTCCTACATGATCCGGGTGGCCAACAAGGAC
ATGACCTACGCCACGCAGCTCAGGAACTACGAGAAGCAAGTCATGGAGGTGAGCTAGTGACCCTTTTTTGTCACTCTGGC
ACGTTCAACTGTATGCATAAACTTGTGAGTTGTCAGTTGTGACTGAGTGCCACCATTA--ACTGTTTTCGTTGCAGAAAC
GGCTGGAGAGCCTGTCGGAGGCGGAGCTGCAGGTGCTGCTGGAGCAGGTGGAGGAGGAGAAGGAACGCCTGCCGCCGACG
AGGAGGGATCAGGGTATCACCATCAACAGGAAGATGGAGGATCAGACCACTGCTAACTAATAG---CTAGAACACCTCGA
TCATGATACTAGCCCAGTACA--CTGTTAGGATAGCTTTGCATCGATTGATTATGGGTTTTCCTTTGTTATAAGAACTCT
GTAGCACAATACTAGTAGTAGTGCTCGTAGCAGCAGCATTGAGTTATACTCCGATCTCCGAAAAATAGTACCGAGATTCA
CATGGATGAACGCGATACATAAATCAACATGACAACAAAACTCAAACATTGT----------------------------
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>chr3A_1
TTGCCGGTGACGAAGGGCCCCAGGGAGGCGATCAGCTTCTCGGGGCTGCCGATGTCCTCGATGGTGGCGTTCGGCCGGTT
GGTGAGGCGGATCAGCGGCGAGGCCACCACCTGCACTTTGCCCTGCCTCTCGTCCTCGAATTTCACCTCCACCCATGGCT
CCGCGCACTTGGGCTGGCAGTAATTGCCGGAGAGTATGTTGGCCACTCGCAGCTGCTTCCAGGTGGGCGGCAGGATGAAC
TCATATGGTTCCACATTGCCTGAATTTCATGA-CAAAACTCAACTCAGTTGACTAATCGACAGGGTGCATCAGATTGCAA
GATAGGTA---------------------------------CTAGCACTAACAAGGAACAATGCATGGAGATAGCTAGAA
AGTAGCAAGAACCGAGTGATCACCAGCCCGGAGGGCGGGGGTGTCCTTGGTGGTGGCCTTGAAGAACACGAAGCCCGGGC
TGGCCGGCGCCGGCGGCAGGTACTTGCCGGCCTCGACCTCGCGCGCTCCCGCGGGCAGCGGCGTCGCCGAGAACAGCGCA
CCGAGCGCCGTCCCCACCACCAGCTCCCTCCTGTGGCTAGCAACCGCGAGAGGCGCCGACTGCGGGGCAGGGGCAGCGTT
GTCCGCAGACACAGCGTGGAGAGCAGAGGAGCGCGTGGCGCAGGAGGCGACCCGCAGCCGGAGCGTAGGCCGCAGGAGCG
GGGAGAAGACGGAAGAGGAGGAAGAAGCCATGAGCGAGCGCGCGAGGGCCACGGGTTCGCGCGCG---GGAGGGTCAGAA
GAACGGCCACTCTTATCCAGACGAGTGTGATATTTGGCCTTGTCGACGCGCTCGCA----TTCTTGATCTCGATGTGGCG
AGTTTGTGTACGTGTACGTGTACGGAAGAGGTGCCGGGGACGCGGCTGAGCAGCGCCCCCTCAGTCAGTCAGCACGTCGA
GGATAAGGTGGGATAAAAGGGAGCCAGAGG-GCGGGTGTGCGGCCGAGCAGCAACGGTGGA---ATTACTCGGCAACCAT
GGCGCCTGCAGCCTTGTCCGCCCCCGTCCTTCGCGTCTCTCCACAGTCGGCTGGA---AGGGCCGCCGCCGCCGCGCCCG
CCGGCGGTCTCCGCTGCGGCCAGACGGCTTGCCTGCACTCCGGCCATTCTGGTATTCTTGCTTCTGCTCCATGC-----T
CTTTTCTTGTGCTAATGAGCTGCACGAATCCAGTGAGCAGATGGATT-ATTAACAAACTGATCTTGTTATGTTCTGCAAA
AGGCCAAACCGTGCTGCGATCGAAGGTGCTGCTGCAGAGGCCCGTGGGGCAGAGGAGGCGCTCGGCGCTGAGAAGCAGCG
TGGATGACTCCAAAGCCACGGATGACA-----------------------------------------------------
------------------------------------------------------------------AGGTGGAGTTCGGG
TACTCGAGGAAAGACGTGCTGCTGATCGGCGTCGGCGTCACCCTCCTCGGCTACGGCCTCAAGTCCGGCCTCGAGGTGAC
C-TCCTCTTCATTTCTCTAG---CAAAATCCGGCAGCTGCTCGATTTGCCAACGATGAT---GAAGAACATGTTTGTATT
TTACCTGAACCTGATCGCA------AACCCTTTCCCTGACCGCGCGCAGTTCGTCGGCGTGGACCCCCTGCAAGCCGGCA
ACGTGGTCCAGCTGTTCATCGTGCTCGGGATGACGGTGGGGTGGATCTCCTCCTACATGATCCGGGTGGCCAACAAGGAC
ATGACCTACGCCACGCAGCTCAGGAACTACGAGAAGCAAGTCATGGAGGTGAGCTAGTGACCCCTCTGCCATCAACAAGA
AAC----------------AAGTTGTGACTTGTGACTTGTGACTGA---CCACCATTAAAACTGTTTTCGTTGCAGAAAC
GGCTGGAGAGCCTGTCGGAGGCGGAGCTGCAGGTGCTGCTGGAGCAGGTGGAGGAGGAGAAGGAACGCCTGCCGCCGATG
AGGAGGGATCAGGGAATCACCATCAACAGGAAGACGGAGGATCAGACCACTGCCAACTAATAGCTCCTAGAAGACCTCGA
TCATGATACTAGCCCAGTACA--TTGTTAGGATAGC-TTGCATCGATTGATTATGGCTTTTCCTTTGTTATAAGAA-TCT
GTAGCACAATACTAGTAGT---GCTCTTAGCAGCAACACTGAGTTATACTCCGAAGAATAGT------TACCAAGATTCA
CATGGATAGAAGCCATACATAAAT--------------------------------------------------------
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>chr5B_2534
GCAGAGAT------------------------------------------------------------------------
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-----------------------------------------------TAAATTGCAAGAAACCACCATTTTGATGGCTAG
ATTTGCAGAAAACACTACGTTACAATATTTTGACAGAAAGCACCACGTTTCGTGGCATCTTGTTGCAAATAACATTGATT
GTCGGATTAGATCACTTTTAGTATATTTATGACAGGTCGGTCCAGATTTTACCCACGTGGCGTAACGGCTCGGCCGAGAC
GGTGTCAGAGTCGACATGGGGCCCACCTATCAGCCGGATTCTTCCATTCATCCTTTTTCTCTCACAAGAAATTCCTCCCT
GATCCCCTTTCTCATGGTGGAAGCAGGCATGCCGCCACCCATGCCCGATCCCAACCGCCACCGCACGGCCGGACTGTGTC
GTGATAGCTGGCGTCGGCGACGAACCCATCCCTCCCTCTACTCCTCCCGGCCGCCTAGATCGACCATGTACGCCGTGCCA
TGGATGAGCGTCGTGGATGCC-------------------------GCCGCCGCCTCGCTATCGCGGCCACGCGCGCTAC
CCACAACGACCATTCTTGAGGCCACCGATGGACCGGCGTCGCGCCAATC-----
>SNPs
--------------S-------------------------------------------------------------S---
------------------------S--S-----------------------S----------------------------
-------------------------------S------------------------------------------------
---------------------------------------------------------------S-------S-S------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
----------------------------------------------------S---------------------------
----------------------------------------S-----S--S--------------------S---------
-----------------------------------------------S------------------------------S-
---------------------------------------------------S-----------S-SS-------------
--------------------------------------------------------------S-----------------
------------------------------------------------------SSSSSS-------------------S
-------------------------S--S---------------------------------------------------
-------------------------------------------------------------SSS----------------
------S---------------------------------S--------S-S-----------------SS---------
-------S--------S---S------------S---------------------S-----------S------SSSSS-
-------------------------SS-----SS--------S-----S--------S----------------------
------------------------------------------------S-------------SS----------------
-------------------------------S-------------S-------SSSSSSSS------S--S---------
--S-S--------S-S--SSS--------------S-------SSSS-----------------------S---------
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-S--S----S-----S------------S--S-----------S-------------------SS-SSSS----------
----S-------S---SSSSSSSSS--S--S-----------S-------------------------------------
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--------------------------------------------------------------------S-SS-SSSSS--
SS-SSSS--SSS-S-SSS--S----------------S-------S----------------------------------
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--------------S-----------------------------------------------------------------
--------S------------SS----------------------------------S----------------------
--------------------------------------------------------------S-----------------
----------------------------S-----S-------S-S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S-----S------
SS--S-------------------S-S---S---------------S-S-S---SS------------------S----S
-S-----S---S------S-----S---------S--S----S-------S--S-------------SS-----SSS--S
--S---------S-------S--S----S-----S---S-----S----------------S-SS---------------
-------SSSSSSS---------------------------S-------------S------S--S----------S-S-
----SS--S-----------S--S----S-------------------S-------S-------------S----S----
----S-----S-SS---S---SSSSSSSSSSSSSSSSSSSSSSSSS-------------SS-------S----SS-----
--S-------S-------S------------------------------SSSSS
>forward_351
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-----------GCACCAACGAGGAACAATGC-------------------------------------------------
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>reverse_1616
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---------------CCTAGCAAAAACCAGCAGCG---------------------------------------------
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>forward_1196
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--------------------------------------------------------TTTGCTTCTGCCCCATGCTA----
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>reverse_2527
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----------------------------------------------TACGACGCGTCTATGCTGAC--------------
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