Multiple sequence alignment - TraesCS3D01G325100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G325100 | chr3D | 100.000 | 1823 | 0 | 0 | 975 | 2797 | 437966538 | 437968360 | 0.000000e+00 | 3367 |
1 | TraesCS3D01G325100 | chr3D | 100.000 | 622 | 0 | 0 | 1 | 622 | 437965564 | 437966185 | 0.000000e+00 | 1149 |
2 | TraesCS3D01G325100 | chr3D | 92.600 | 473 | 19 | 3 | 11 | 467 | 512695369 | 512695841 | 0.000000e+00 | 665 |
3 | TraesCS3D01G325100 | chr3B | 88.612 | 641 | 26 | 25 | 2099 | 2735 | 573404050 | 573404647 | 0.000000e+00 | 736 |
4 | TraesCS3D01G325100 | chr3B | 97.143 | 280 | 6 | 1 | 975 | 1252 | 573403706 | 573403985 | 3.260000e-129 | 472 |
5 | TraesCS3D01G325100 | chr3B | 94.631 | 149 | 8 | 0 | 474 | 622 | 573403510 | 573403658 | 6.030000e-57 | 231 |
6 | TraesCS3D01G325100 | chr5D | 92.812 | 473 | 18 | 3 | 11 | 467 | 65104949 | 65105421 | 0.000000e+00 | 671 |
7 | TraesCS3D01G325100 | chr5D | 94.872 | 273 | 14 | 0 | 11 | 283 | 65995313 | 65995585 | 7.160000e-116 | 427 |
8 | TraesCS3D01G325100 | chr5D | 92.473 | 186 | 12 | 2 | 284 | 467 | 65997663 | 65997848 | 5.940000e-67 | 265 |
9 | TraesCS3D01G325100 | chr5D | 82.879 | 257 | 35 | 3 | 995 | 1245 | 529845178 | 529845431 | 3.630000e-54 | 222 |
10 | TraesCS3D01G325100 | chr5D | 81.905 | 210 | 23 | 8 | 1037 | 1244 | 529815854 | 529816050 | 2.230000e-36 | 163 |
11 | TraesCS3D01G325100 | chr5D | 77.186 | 263 | 34 | 17 | 996 | 1244 | 529800917 | 529801167 | 2.260000e-26 | 130 |
12 | TraesCS3D01G325100 | chr3A | 90.688 | 494 | 25 | 9 | 1461 | 1935 | 576209735 | 576210226 | 3.040000e-179 | 638 |
13 | TraesCS3D01G325100 | chr3A | 95.486 | 288 | 6 | 4 | 2099 | 2386 | 576210277 | 576210557 | 1.180000e-123 | 453 |
14 | TraesCS3D01G325100 | chr3A | 95.763 | 236 | 10 | 0 | 975 | 1210 | 576208929 | 576209164 | 5.650000e-102 | 381 |
15 | TraesCS3D01G325100 | chr3A | 89.247 | 279 | 16 | 3 | 2406 | 2675 | 576210546 | 576210819 | 1.240000e-88 | 337 |
16 | TraesCS3D01G325100 | chr3A | 95.973 | 149 | 6 | 0 | 474 | 622 | 576208733 | 576208881 | 2.780000e-60 | 243 |
17 | TraesCS3D01G325100 | chr3A | 92.174 | 115 | 7 | 2 | 1348 | 1462 | 576209546 | 576209658 | 8.020000e-36 | 161 |
18 | TraesCS3D01G325100 | chr3A | 88.525 | 122 | 6 | 6 | 2675 | 2795 | 576212104 | 576212218 | 1.040000e-29 | 141 |
19 | TraesCS3D01G325100 | chr5B | 89.362 | 470 | 35 | 3 | 13 | 467 | 139154508 | 139154039 | 6.720000e-161 | 577 |
20 | TraesCS3D01G325100 | chr5B | 88.298 | 470 | 40 | 3 | 13 | 467 | 474269644 | 474269175 | 1.460000e-152 | 549 |
21 | TraesCS3D01G325100 | chr5B | 83.812 | 383 | 52 | 9 | 93 | 467 | 680681186 | 680681566 | 3.430000e-94 | 355 |
22 | TraesCS3D01G325100 | chr4D | 89.083 | 458 | 35 | 3 | 11 | 453 | 489155380 | 489154923 | 3.150000e-154 | 555 |
23 | TraesCS3D01G325100 | chr4D | 88.136 | 472 | 40 | 9 | 11 | 467 | 461842647 | 461842177 | 5.270000e-152 | 547 |
24 | TraesCS3D01G325100 | chr6B | 87.686 | 471 | 42 | 3 | 13 | 467 | 695842475 | 695842005 | 4.100000e-148 | 534 |
25 | TraesCS3D01G325100 | chr2D | 85.684 | 475 | 49 | 5 | 11 | 467 | 622249459 | 622248986 | 1.510000e-132 | 483 |
26 | TraesCS3D01G325100 | chr1D | 89.607 | 356 | 21 | 8 | 11 | 352 | 467103940 | 467104293 | 3.310000e-119 | 438 |
27 | TraesCS3D01G325100 | chr6D | 87.644 | 348 | 22 | 7 | 141 | 467 | 448707651 | 448707998 | 4.370000e-103 | 385 |
28 | TraesCS3D01G325100 | chr6A | 88.679 | 318 | 21 | 2 | 161 | 463 | 15691140 | 15690823 | 9.460000e-100 | 374 |
29 | TraesCS3D01G325100 | chr5A | 82.212 | 208 | 24 | 6 | 1038 | 1244 | 657757044 | 657757239 | 1.720000e-37 | 167 |
30 | TraesCS3D01G325100 | chr5A | 77.947 | 263 | 37 | 13 | 997 | 1244 | 657725193 | 657725449 | 8.070000e-31 | 145 |
31 | TraesCS3D01G325100 | chr5A | 80.102 | 196 | 26 | 4 | 1038 | 1223 | 657760367 | 657760559 | 1.750000e-27 | 134 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G325100 | chr3D | 437965564 | 437968360 | 2796 | False | 2258.000000 | 3367 | 100.000000 | 1 | 2797 | 2 | chr3D.!!$F2 | 2796 |
1 | TraesCS3D01G325100 | chr3B | 573403510 | 573404647 | 1137 | False | 479.666667 | 736 | 93.462000 | 474 | 2735 | 3 | chr3B.!!$F1 | 2261 |
2 | TraesCS3D01G325100 | chr5D | 65995313 | 65997848 | 2535 | False | 346.000000 | 427 | 93.672500 | 11 | 467 | 2 | chr5D.!!$F5 | 456 |
3 | TraesCS3D01G325100 | chr3A | 576208733 | 576212218 | 3485 | False | 336.285714 | 638 | 92.550857 | 474 | 2795 | 7 | chr3A.!!$F1 | 2321 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
303 | 2381 | 1.197910 | GTACTTATCCACGTCAGCGC | 58.802 | 55.0 | 0.00 | 0.0 | 42.83 | 5.92 | F |
1291 | 3393 | 0.033504 | GCGAGTGAGGTCCAACTGAA | 59.966 | 55.0 | 2.11 | 0.0 | 0.00 | 3.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1306 | 3408 | 0.321564 | TTGTGGATCCAACAGCTCGG | 60.322 | 55.000 | 18.2 | 0.0 | 0.0 | 4.63 | R |
2571 | 5000 | 1.546029 | AGCAGCTCGAACATCACAGTA | 59.454 | 47.619 | 0.0 | 0.0 | 0.0 | 2.74 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 2.847234 | CTACCGCCAGCCCCCATA | 60.847 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
40 | 41 | 2.122547 | CCCCCATAGCGGTAGGGT | 60.123 | 66.667 | 22.40 | 0.00 | 41.16 | 4.34 |
74 | 75 | 1.407712 | GGGCCCTTGCACTTATCGTTA | 60.408 | 52.381 | 17.04 | 0.00 | 38.13 | 3.18 |
151 | 152 | 3.706373 | ACACAGCCTACCGCCAGG | 61.706 | 66.667 | 0.00 | 0.00 | 45.13 | 4.45 |
193 | 194 | 4.415150 | CCGCCAGGTCCACTGCAT | 62.415 | 66.667 | 0.00 | 0.00 | 46.14 | 3.96 |
216 | 217 | 7.675637 | GCATATTTCGTTACAGAAGGGTTGTAC | 60.676 | 40.741 | 0.00 | 0.00 | 31.17 | 2.90 |
303 | 2381 | 1.197910 | GTACTTATCCACGTCAGCGC | 58.802 | 55.000 | 0.00 | 0.00 | 42.83 | 5.92 |
348 | 2426 | 3.636929 | TTGCACCCTACCGCCATGG | 62.637 | 63.158 | 7.63 | 7.63 | 46.41 | 3.66 |
349 | 2427 | 4.875713 | GCACCCTACCGCCATGGG | 62.876 | 72.222 | 15.13 | 3.37 | 44.64 | 4.00 |
379 | 2457 | 2.466547 | AGGCTGTATAACCCTACCGT | 57.533 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
382 | 2460 | 2.035576 | GGCTGTATAACCCTACCGTCAG | 59.964 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
391 | 2469 | 1.388065 | CCTACCGTCAGAGCCTCTGG | 61.388 | 65.000 | 21.14 | 8.40 | 44.39 | 3.86 |
407 | 2485 | 2.678336 | CTCTGGCGATAACAAAAGGGTC | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
444 | 2522 | 1.335132 | GCAACCGGGGTCAGATCCTA | 61.335 | 60.000 | 6.32 | 0.00 | 0.00 | 2.94 |
455 | 2533 | 6.826741 | CGGGGTCAGATCCTAAATTTCTTAAA | 59.173 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
614 | 2692 | 3.760035 | CTCCGGAGTGTCCCCACG | 61.760 | 72.222 | 24.04 | 0.00 | 46.56 | 4.94 |
1060 | 3138 | 1.875813 | CTGCTCTTGCTACTCGCCG | 60.876 | 63.158 | 0.00 | 0.00 | 40.48 | 6.46 |
1273 | 3375 | 2.485124 | CCTCTCTCATGTTCATCCCTGC | 60.485 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
1282 | 3384 | 0.904865 | TTCATCCCTGCGAGTGAGGT | 60.905 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1286 | 3388 | 2.583441 | CCCTGCGAGTGAGGTCCAA | 61.583 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
1287 | 3389 | 1.374758 | CCTGCGAGTGAGGTCCAAC | 60.375 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
1288 | 3390 | 1.668294 | CTGCGAGTGAGGTCCAACT | 59.332 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
1289 | 3391 | 0.668706 | CTGCGAGTGAGGTCCAACTG | 60.669 | 60.000 | 2.11 | 0.00 | 0.00 | 3.16 |
1290 | 3392 | 1.112916 | TGCGAGTGAGGTCCAACTGA | 61.113 | 55.000 | 2.11 | 0.00 | 0.00 | 3.41 |
1291 | 3393 | 0.033504 | GCGAGTGAGGTCCAACTGAA | 59.966 | 55.000 | 2.11 | 0.00 | 0.00 | 3.02 |
1292 | 3394 | 1.338200 | GCGAGTGAGGTCCAACTGAAT | 60.338 | 52.381 | 2.11 | 0.00 | 0.00 | 2.57 |
1293 | 3395 | 2.611518 | CGAGTGAGGTCCAACTGAATC | 58.388 | 52.381 | 2.11 | 0.00 | 0.00 | 2.52 |
1294 | 3396 | 2.232452 | CGAGTGAGGTCCAACTGAATCT | 59.768 | 50.000 | 2.11 | 0.00 | 0.00 | 2.40 |
1295 | 3397 | 3.594134 | GAGTGAGGTCCAACTGAATCTG | 58.406 | 50.000 | 2.11 | 0.00 | 0.00 | 2.90 |
1296 | 3398 | 2.975489 | AGTGAGGTCCAACTGAATCTGT | 59.025 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1297 | 3399 | 3.070018 | GTGAGGTCCAACTGAATCTGTG | 58.930 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1298 | 3400 | 2.705658 | TGAGGTCCAACTGAATCTGTGT | 59.294 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
1299 | 3401 | 3.136443 | TGAGGTCCAACTGAATCTGTGTT | 59.864 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1300 | 3402 | 4.346709 | TGAGGTCCAACTGAATCTGTGTTA | 59.653 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
1301 | 3403 | 4.642429 | AGGTCCAACTGAATCTGTGTTAC | 58.358 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
1302 | 3404 | 4.102524 | AGGTCCAACTGAATCTGTGTTACA | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
1303 | 3405 | 4.213482 | GGTCCAACTGAATCTGTGTTACAC | 59.787 | 45.833 | 8.76 | 8.76 | 34.56 | 2.90 |
1304 | 3406 | 4.814234 | GTCCAACTGAATCTGTGTTACACA | 59.186 | 41.667 | 17.67 | 17.67 | 42.45 | 3.72 |
1311 | 3413 | 4.354155 | TGTGTTACACAGCCGAGC | 57.646 | 55.556 | 14.73 | 0.00 | 39.62 | 5.03 |
1312 | 3414 | 1.745890 | TGTGTTACACAGCCGAGCT | 59.254 | 52.632 | 14.73 | 0.00 | 39.62 | 4.09 |
1321 | 3423 | 2.586792 | AGCCGAGCTGTTGGATCC | 59.413 | 61.111 | 4.20 | 4.20 | 37.57 | 3.36 |
1322 | 3424 | 2.268920 | GCCGAGCTGTTGGATCCA | 59.731 | 61.111 | 11.44 | 11.44 | 0.00 | 3.41 |
1323 | 3425 | 2.109126 | GCCGAGCTGTTGGATCCAC | 61.109 | 63.158 | 15.91 | 10.58 | 0.00 | 4.02 |
1324 | 3426 | 1.296392 | CCGAGCTGTTGGATCCACA | 59.704 | 57.895 | 15.91 | 14.69 | 0.00 | 4.17 |
1325 | 3427 | 0.321564 | CCGAGCTGTTGGATCCACAA | 60.322 | 55.000 | 15.91 | 4.49 | 0.00 | 3.33 |
1326 | 3428 | 1.522668 | CGAGCTGTTGGATCCACAAA | 58.477 | 50.000 | 15.91 | 0.00 | 31.17 | 2.83 |
1327 | 3429 | 1.466167 | CGAGCTGTTGGATCCACAAAG | 59.534 | 52.381 | 15.91 | 13.18 | 31.17 | 2.77 |
1328 | 3430 | 1.200948 | GAGCTGTTGGATCCACAAAGC | 59.799 | 52.381 | 25.13 | 25.13 | 36.07 | 3.51 |
1329 | 3431 | 1.202976 | AGCTGTTGGATCCACAAAGCT | 60.203 | 47.619 | 27.76 | 27.76 | 38.62 | 3.74 |
1330 | 3432 | 1.615392 | GCTGTTGGATCCACAAAGCTT | 59.385 | 47.619 | 25.18 | 0.00 | 34.57 | 3.74 |
1331 | 3433 | 2.036346 | GCTGTTGGATCCACAAAGCTTT | 59.964 | 45.455 | 25.18 | 5.69 | 34.57 | 3.51 |
1332 | 3434 | 3.645884 | CTGTTGGATCCACAAAGCTTTG | 58.354 | 45.455 | 32.53 | 32.53 | 43.62 | 2.77 |
1333 | 3435 | 2.364970 | TGTTGGATCCACAAAGCTTTGG | 59.635 | 45.455 | 35.65 | 24.11 | 42.34 | 3.28 |
1334 | 3436 | 2.365293 | GTTGGATCCACAAAGCTTTGGT | 59.635 | 45.455 | 35.65 | 21.81 | 42.34 | 3.67 |
1335 | 3437 | 2.676748 | TGGATCCACAAAGCTTTGGTT | 58.323 | 42.857 | 35.65 | 19.59 | 42.34 | 3.67 |
1336 | 3438 | 3.838565 | TGGATCCACAAAGCTTTGGTTA | 58.161 | 40.909 | 35.65 | 22.98 | 42.34 | 2.85 |
1337 | 3439 | 3.572255 | TGGATCCACAAAGCTTTGGTTAC | 59.428 | 43.478 | 35.65 | 23.33 | 42.34 | 2.50 |
1338 | 3440 | 3.572255 | GGATCCACAAAGCTTTGGTTACA | 59.428 | 43.478 | 35.65 | 18.85 | 42.34 | 2.41 |
1339 | 3441 | 4.321230 | GGATCCACAAAGCTTTGGTTACAG | 60.321 | 45.833 | 35.65 | 20.03 | 42.34 | 2.74 |
1340 | 3442 | 2.955660 | TCCACAAAGCTTTGGTTACAGG | 59.044 | 45.455 | 35.65 | 26.01 | 42.34 | 4.00 |
1341 | 3443 | 2.545742 | CCACAAAGCTTTGGTTACAGGC | 60.546 | 50.000 | 35.65 | 0.00 | 42.34 | 4.85 |
1342 | 3444 | 1.686587 | ACAAAGCTTTGGTTACAGGCC | 59.313 | 47.619 | 35.65 | 0.00 | 42.34 | 5.19 |
1343 | 3445 | 1.000843 | CAAAGCTTTGGTTACAGGCCC | 59.999 | 52.381 | 28.12 | 0.00 | 34.59 | 5.80 |
1344 | 3446 | 0.482887 | AAGCTTTGGTTACAGGCCCT | 59.517 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1345 | 3447 | 0.482887 | AGCTTTGGTTACAGGCCCTT | 59.517 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1346 | 3448 | 0.888619 | GCTTTGGTTACAGGCCCTTC | 59.111 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1349 | 3671 | 3.230976 | CTTTGGTTACAGGCCCTTCTTT | 58.769 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
1353 | 3675 | 3.396611 | TGGTTACAGGCCCTTCTTTACTT | 59.603 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1373 | 3695 | 9.545105 | TTTACTTTTACACCGATCTAAGTTGAA | 57.455 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
1400 | 3722 | 4.697352 | GGCCGCTGTAAATCATATGAATCT | 59.303 | 41.667 | 9.99 | 0.00 | 0.00 | 2.40 |
1404 | 3726 | 6.075918 | CGCTGTAAATCATATGAATCTGTGC | 58.924 | 40.000 | 9.99 | 9.69 | 0.00 | 4.57 |
1451 | 3773 | 4.576106 | TTTTCGCAACAAAAAGCAAGAC | 57.424 | 36.364 | 0.00 | 0.00 | 0.00 | 3.01 |
1470 | 3870 | 7.716998 | AGCAAGACATGAAGTATATTTGGTAGG | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1475 | 3875 | 8.029782 | ACATGAAGTATATTTGGTAGGCAGTA | 57.970 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1504 | 3904 | 4.281182 | ACAGTGCTCCTCCTATATTTACCG | 59.719 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
1506 | 3906 | 3.056035 | GTGCTCCTCCTATATTTACCGGG | 60.056 | 52.174 | 6.32 | 0.00 | 0.00 | 5.73 |
1518 | 3924 | 8.905850 | CCTATATTTACCGGGTTTGTATTTGTT | 58.094 | 33.333 | 4.31 | 0.00 | 0.00 | 2.83 |
1520 | 3926 | 5.450592 | TTTACCGGGTTTGTATTTGTTCC | 57.549 | 39.130 | 4.31 | 0.00 | 0.00 | 3.62 |
1523 | 3929 | 3.319689 | ACCGGGTTTGTATTTGTTCCAAG | 59.680 | 43.478 | 6.32 | 0.00 | 0.00 | 3.61 |
1532 | 3938 | 6.968263 | TGTATTTGTTCCAAGAATTGTCCA | 57.032 | 33.333 | 0.00 | 0.00 | 46.99 | 4.02 |
1533 | 3939 | 6.980593 | TGTATTTGTTCCAAGAATTGTCCAG | 58.019 | 36.000 | 0.00 | 0.00 | 46.99 | 3.86 |
1545 | 3951 | 5.476614 | AGAATTGTCCAGTAGTACGTTTCC | 58.523 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
1547 | 3953 | 1.895131 | TGTCCAGTAGTACGTTTCCCC | 59.105 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
1548 | 3954 | 1.895131 | GTCCAGTAGTACGTTTCCCCA | 59.105 | 52.381 | 0.00 | 0.00 | 0.00 | 4.96 |
1549 | 3955 | 2.498885 | GTCCAGTAGTACGTTTCCCCAT | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1550 | 3956 | 2.498481 | TCCAGTAGTACGTTTCCCCATG | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1551 | 3957 | 2.498481 | CCAGTAGTACGTTTCCCCATGA | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1552 | 3958 | 3.518590 | CAGTAGTACGTTTCCCCATGAC | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1574 | 3983 | 6.057321 | ACATGGAGGTTTTTAGTCCGATTA | 57.943 | 37.500 | 0.00 | 0.00 | 32.51 | 1.75 |
1625 | 4034 | 0.390472 | CCCTGCTGGAGTTCGAGAAC | 60.390 | 60.000 | 11.88 | 7.83 | 41.45 | 3.01 |
1635 | 4044 | 0.507358 | GTTCGAGAACGTGGTGAAGC | 59.493 | 55.000 | 0.00 | 0.00 | 40.69 | 3.86 |
1679 | 4088 | 4.414852 | GCACGATGCACTTCATTACAATT | 58.585 | 39.130 | 0.00 | 0.00 | 44.26 | 2.32 |
1771 | 4180 | 0.036858 | AAGCTCGAGGAGTTCAAGCC | 60.037 | 55.000 | 15.58 | 0.00 | 31.39 | 4.35 |
1789 | 4198 | 2.045926 | GGTGGAGGACGCTGCAAT | 60.046 | 61.111 | 0.00 | 0.00 | 0.00 | 3.56 |
1806 | 4222 | 5.422666 | TGCAATCGCATAAGGTAAGATTG | 57.577 | 39.130 | 10.92 | 10.92 | 45.36 | 2.67 |
1830 | 4249 | 3.186909 | CTCTGTTTCACACTGAACGTCA | 58.813 | 45.455 | 0.00 | 0.00 | 35.89 | 4.35 |
1833 | 4252 | 4.073169 | TGTTTCACACTGAACGTCAAAC | 57.927 | 40.909 | 0.00 | 0.00 | 35.89 | 2.93 |
1852 | 4271 | 7.493313 | GTCAAACAAAATTGCGTCTATTTCAG | 58.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
1897 | 4316 | 9.617523 | TGATTCTTGTTTCAAGAGCATATCATA | 57.382 | 29.630 | 14.89 | 1.20 | 0.00 | 2.15 |
1901 | 4320 | 9.049523 | TCTTGTTTCAAGAGCATATCATATCAC | 57.950 | 33.333 | 7.92 | 0.00 | 0.00 | 3.06 |
1906 | 4325 | 7.781324 | TCAAGAGCATATCATATCACCTGTA | 57.219 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1935 | 4354 | 2.290832 | TGGTTGAATCATGCAGGCTGTA | 60.291 | 45.455 | 17.16 | 12.83 | 0.00 | 2.74 |
1936 | 4355 | 2.098117 | GGTTGAATCATGCAGGCTGTAC | 59.902 | 50.000 | 17.16 | 0.20 | 0.00 | 2.90 |
1937 | 4356 | 2.749076 | GTTGAATCATGCAGGCTGTACA | 59.251 | 45.455 | 17.16 | 6.83 | 0.00 | 2.90 |
1938 | 4357 | 3.286329 | TGAATCATGCAGGCTGTACAT | 57.714 | 42.857 | 17.16 | 9.05 | 0.00 | 2.29 |
1939 | 4358 | 3.623703 | TGAATCATGCAGGCTGTACATT | 58.376 | 40.909 | 17.16 | 13.13 | 0.00 | 2.71 |
1940 | 4359 | 4.018490 | TGAATCATGCAGGCTGTACATTT | 58.982 | 39.130 | 17.16 | 5.94 | 0.00 | 2.32 |
1941 | 4360 | 4.463539 | TGAATCATGCAGGCTGTACATTTT | 59.536 | 37.500 | 17.16 | 7.82 | 0.00 | 1.82 |
1942 | 4361 | 4.644103 | ATCATGCAGGCTGTACATTTTC | 57.356 | 40.909 | 17.16 | 0.00 | 0.00 | 2.29 |
1943 | 4362 | 3.419943 | TCATGCAGGCTGTACATTTTCA | 58.580 | 40.909 | 17.16 | 2.89 | 0.00 | 2.69 |
1944 | 4363 | 3.825585 | TCATGCAGGCTGTACATTTTCAA | 59.174 | 39.130 | 17.16 | 0.00 | 0.00 | 2.69 |
1945 | 4364 | 4.280425 | TCATGCAGGCTGTACATTTTCAAA | 59.720 | 37.500 | 17.16 | 0.00 | 0.00 | 2.69 |
1946 | 4365 | 4.662468 | TGCAGGCTGTACATTTTCAAAA | 57.338 | 36.364 | 17.16 | 0.00 | 0.00 | 2.44 |
1947 | 4366 | 5.016051 | TGCAGGCTGTACATTTTCAAAAA | 57.984 | 34.783 | 17.16 | 0.00 | 0.00 | 1.94 |
2017 | 4439 | 7.862274 | ATTGATCATCAGGACTATAAGGTCA | 57.138 | 36.000 | 0.00 | 0.00 | 37.91 | 4.02 |
2018 | 4440 | 7.675161 | TTGATCATCAGGACTATAAGGTCAA | 57.325 | 36.000 | 0.00 | 0.00 | 37.91 | 3.18 |
2019 | 4441 | 7.055667 | TGATCATCAGGACTATAAGGTCAAC | 57.944 | 40.000 | 0.00 | 0.00 | 37.91 | 3.18 |
2020 | 4442 | 6.841229 | TGATCATCAGGACTATAAGGTCAACT | 59.159 | 38.462 | 0.00 | 0.00 | 37.91 | 3.16 |
2021 | 4443 | 7.345653 | TGATCATCAGGACTATAAGGTCAACTT | 59.654 | 37.037 | 0.00 | 0.00 | 43.28 | 2.66 |
2022 | 4444 | 7.113658 | TCATCAGGACTATAAGGTCAACTTC | 57.886 | 40.000 | 0.00 | 0.00 | 40.64 | 3.01 |
2023 | 4445 | 6.897966 | TCATCAGGACTATAAGGTCAACTTCT | 59.102 | 38.462 | 0.00 | 0.00 | 40.64 | 2.85 |
2024 | 4446 | 8.059461 | TCATCAGGACTATAAGGTCAACTTCTA | 58.941 | 37.037 | 0.00 | 0.00 | 40.64 | 2.10 |
2025 | 4447 | 8.696374 | CATCAGGACTATAAGGTCAACTTCTAA | 58.304 | 37.037 | 0.00 | 0.00 | 40.64 | 2.10 |
2026 | 4448 | 8.660295 | TCAGGACTATAAGGTCAACTTCTAAA | 57.340 | 34.615 | 0.00 | 0.00 | 40.64 | 1.85 |
2027 | 4449 | 9.096823 | TCAGGACTATAAGGTCAACTTCTAAAA | 57.903 | 33.333 | 0.00 | 0.00 | 40.64 | 1.52 |
2028 | 4450 | 9.720769 | CAGGACTATAAGGTCAACTTCTAAAAA | 57.279 | 33.333 | 0.00 | 0.00 | 40.64 | 1.94 |
2051 | 4473 | 9.545105 | AAAAAGCTTGTGATGTTCATATGAAAA | 57.455 | 25.926 | 19.55 | 15.18 | 35.58 | 2.29 |
2052 | 4474 | 9.715121 | AAAAGCTTGTGATGTTCATATGAAAAT | 57.285 | 25.926 | 19.19 | 19.19 | 34.81 | 1.82 |
2053 | 4475 | 8.697846 | AAGCTTGTGATGTTCATATGAAAATG | 57.302 | 30.769 | 23.18 | 11.09 | 32.38 | 2.32 |
2054 | 4476 | 6.755141 | AGCTTGTGATGTTCATATGAAAATGC | 59.245 | 34.615 | 23.18 | 18.74 | 32.38 | 3.56 |
2055 | 4477 | 6.019318 | GCTTGTGATGTTCATATGAAAATGCC | 60.019 | 38.462 | 23.18 | 14.09 | 32.38 | 4.40 |
2056 | 4478 | 6.527057 | TGTGATGTTCATATGAAAATGCCA | 57.473 | 33.333 | 23.18 | 16.11 | 32.38 | 4.92 |
2057 | 4479 | 6.566141 | TGTGATGTTCATATGAAAATGCCAG | 58.434 | 36.000 | 23.18 | 0.00 | 32.38 | 4.85 |
2058 | 4480 | 5.461078 | GTGATGTTCATATGAAAATGCCAGC | 59.539 | 40.000 | 23.18 | 17.05 | 32.38 | 4.85 |
2059 | 4481 | 5.127356 | TGATGTTCATATGAAAATGCCAGCA | 59.873 | 36.000 | 23.18 | 19.08 | 32.38 | 4.41 |
2060 | 4482 | 5.402997 | TGTTCATATGAAAATGCCAGCAA | 57.597 | 34.783 | 19.55 | 0.00 | 35.58 | 3.91 |
2061 | 4483 | 5.979993 | TGTTCATATGAAAATGCCAGCAAT | 58.020 | 33.333 | 19.55 | 0.00 | 35.58 | 3.56 |
2062 | 4484 | 6.408035 | TGTTCATATGAAAATGCCAGCAATT | 58.592 | 32.000 | 19.55 | 0.00 | 35.58 | 2.32 |
2063 | 4485 | 6.879993 | TGTTCATATGAAAATGCCAGCAATTT | 59.120 | 30.769 | 19.55 | 5.39 | 35.58 | 1.82 |
2064 | 4486 | 8.039538 | TGTTCATATGAAAATGCCAGCAATTTA | 58.960 | 29.630 | 19.55 | 0.00 | 35.58 | 1.40 |
2065 | 4487 | 9.048446 | GTTCATATGAAAATGCCAGCAATTTAT | 57.952 | 29.630 | 19.55 | 5.20 | 35.58 | 1.40 |
2066 | 4488 | 8.821147 | TCATATGAAAATGCCAGCAATTTATC | 57.179 | 30.769 | 1.98 | 0.00 | 30.20 | 1.75 |
2067 | 4489 | 8.422566 | TCATATGAAAATGCCAGCAATTTATCA | 58.577 | 29.630 | 1.98 | 2.06 | 30.20 | 2.15 |
2068 | 4490 | 9.214957 | CATATGAAAATGCCAGCAATTTATCAT | 57.785 | 29.630 | 5.69 | 8.68 | 30.20 | 2.45 |
2069 | 4491 | 6.912203 | TGAAAATGCCAGCAATTTATCATG | 57.088 | 33.333 | 5.69 | 0.00 | 30.20 | 3.07 |
2070 | 4492 | 5.818336 | TGAAAATGCCAGCAATTTATCATGG | 59.182 | 36.000 | 5.69 | 0.00 | 30.20 | 3.66 |
2071 | 4493 | 4.345859 | AATGCCAGCAATTTATCATGGG | 57.654 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
2072 | 4494 | 3.029483 | TGCCAGCAATTTATCATGGGA | 57.971 | 42.857 | 0.00 | 0.00 | 0.00 | 4.37 |
2073 | 4495 | 2.694628 | TGCCAGCAATTTATCATGGGAC | 59.305 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
2074 | 4496 | 2.036346 | GCCAGCAATTTATCATGGGACC | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2075 | 4497 | 2.629617 | CCAGCAATTTATCATGGGACCC | 59.370 | 50.000 | 2.45 | 2.45 | 0.00 | 4.46 |
2076 | 4498 | 3.569491 | CAGCAATTTATCATGGGACCCT | 58.431 | 45.455 | 13.00 | 0.00 | 0.00 | 4.34 |
2077 | 4499 | 3.319972 | CAGCAATTTATCATGGGACCCTG | 59.680 | 47.826 | 13.00 | 7.83 | 0.00 | 4.45 |
2078 | 4500 | 2.036346 | GCAATTTATCATGGGACCCTGC | 59.964 | 50.000 | 13.00 | 5.94 | 0.00 | 4.85 |
2079 | 4501 | 3.569491 | CAATTTATCATGGGACCCTGCT | 58.431 | 45.455 | 13.00 | 2.01 | 0.00 | 4.24 |
2080 | 4502 | 3.962718 | CAATTTATCATGGGACCCTGCTT | 59.037 | 43.478 | 13.00 | 0.00 | 0.00 | 3.91 |
2081 | 4503 | 5.139727 | CAATTTATCATGGGACCCTGCTTA | 58.860 | 41.667 | 13.00 | 0.00 | 0.00 | 3.09 |
2082 | 4504 | 5.605540 | ATTTATCATGGGACCCTGCTTAT | 57.394 | 39.130 | 13.00 | 1.16 | 0.00 | 1.73 |
2083 | 4505 | 4.640771 | TTATCATGGGACCCTGCTTATC | 57.359 | 45.455 | 13.00 | 0.00 | 0.00 | 1.75 |
2084 | 4506 | 1.891933 | TCATGGGACCCTGCTTATCA | 58.108 | 50.000 | 13.00 | 0.00 | 0.00 | 2.15 |
2085 | 4507 | 2.421725 | TCATGGGACCCTGCTTATCAT | 58.578 | 47.619 | 13.00 | 0.00 | 0.00 | 2.45 |
2086 | 4508 | 2.373169 | TCATGGGACCCTGCTTATCATC | 59.627 | 50.000 | 13.00 | 0.00 | 0.00 | 2.92 |
2087 | 4509 | 1.891933 | TGGGACCCTGCTTATCATCA | 58.108 | 50.000 | 13.00 | 0.00 | 0.00 | 3.07 |
2088 | 4510 | 2.204463 | TGGGACCCTGCTTATCATCAA | 58.796 | 47.619 | 13.00 | 0.00 | 0.00 | 2.57 |
2089 | 4511 | 2.785269 | TGGGACCCTGCTTATCATCAAT | 59.215 | 45.455 | 13.00 | 0.00 | 0.00 | 2.57 |
2090 | 4512 | 3.205056 | TGGGACCCTGCTTATCATCAATT | 59.795 | 43.478 | 13.00 | 0.00 | 0.00 | 2.32 |
2091 | 4513 | 4.415179 | TGGGACCCTGCTTATCATCAATTA | 59.585 | 41.667 | 13.00 | 0.00 | 0.00 | 1.40 |
2092 | 4514 | 5.074929 | TGGGACCCTGCTTATCATCAATTAT | 59.925 | 40.000 | 13.00 | 0.00 | 0.00 | 1.28 |
2093 | 4515 | 6.274436 | TGGGACCCTGCTTATCATCAATTATA | 59.726 | 38.462 | 13.00 | 0.00 | 0.00 | 0.98 |
2094 | 4516 | 6.825721 | GGGACCCTGCTTATCATCAATTATAG | 59.174 | 42.308 | 2.09 | 0.00 | 0.00 | 1.31 |
2095 | 4517 | 7.311297 | GGGACCCTGCTTATCATCAATTATAGA | 60.311 | 40.741 | 2.09 | 0.00 | 0.00 | 1.98 |
2096 | 4518 | 8.103305 | GGACCCTGCTTATCATCAATTATAGAA | 58.897 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2097 | 4519 | 9.678260 | GACCCTGCTTATCATCAATTATAGAAT | 57.322 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2311 | 4733 | 1.156736 | TAAGTCCGCTTCTTGCAAGC | 58.843 | 50.000 | 21.99 | 10.33 | 43.06 | 4.01 |
2315 | 4737 | 1.081641 | CCGCTTCTTGCAAGCTGTG | 60.082 | 57.895 | 21.99 | 19.94 | 43.06 | 3.66 |
2318 | 4740 | 1.534595 | CGCTTCTTGCAAGCTGTGTTT | 60.535 | 47.619 | 21.99 | 0.00 | 43.06 | 2.83 |
2319 | 4741 | 2.122564 | GCTTCTTGCAAGCTGTGTTTC | 58.877 | 47.619 | 21.99 | 1.21 | 42.31 | 2.78 |
2320 | 4742 | 2.480073 | GCTTCTTGCAAGCTGTGTTTCA | 60.480 | 45.455 | 21.99 | 0.00 | 42.31 | 2.69 |
2321 | 4743 | 3.772932 | CTTCTTGCAAGCTGTGTTTCAA | 58.227 | 40.909 | 21.99 | 6.43 | 0.00 | 2.69 |
2322 | 4744 | 3.149436 | TCTTGCAAGCTGTGTTTCAAC | 57.851 | 42.857 | 21.99 | 0.00 | 0.00 | 3.18 |
2325 | 4747 | 1.135141 | TGCAAGCTGTGTTTCAACCAC | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
2326 | 4748 | 1.135141 | GCAAGCTGTGTTTCAACCACA | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
2327 | 4749 | 2.481795 | GCAAGCTGTGTTTCAACCACAT | 60.482 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
2328 | 4750 | 3.374745 | CAAGCTGTGTTTCAACCACATC | 58.625 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
2329 | 4751 | 2.936202 | AGCTGTGTTTCAACCACATCT | 58.064 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
2330 | 4752 | 2.620115 | AGCTGTGTTTCAACCACATCTG | 59.380 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2331 | 4753 | 2.618241 | GCTGTGTTTCAACCACATCTGA | 59.382 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
2373 | 4798 | 9.461312 | TCAGTATTATTGTATTTTGTTCTGCCT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 4.75 |
2378 | 4803 | 9.995003 | ATTATTGTATTTTGTTCTGCCTTTTGA | 57.005 | 25.926 | 0.00 | 0.00 | 0.00 | 2.69 |
2379 | 4804 | 9.995003 | TTATTGTATTTTGTTCTGCCTTTTGAT | 57.005 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
2380 | 4805 | 8.907222 | ATTGTATTTTGTTCTGCCTTTTGATT | 57.093 | 26.923 | 0.00 | 0.00 | 0.00 | 2.57 |
2381 | 4806 | 7.712264 | TGTATTTTGTTCTGCCTTTTGATTG | 57.288 | 32.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2382 | 4807 | 7.495901 | TGTATTTTGTTCTGCCTTTTGATTGA | 58.504 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2383 | 4808 | 6.849588 | ATTTTGTTCTGCCTTTTGATTGAC | 57.150 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2384 | 4809 | 5.596836 | TTTGTTCTGCCTTTTGATTGACT | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
2385 | 4810 | 5.596836 | TTGTTCTGCCTTTTGATTGACTT | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 3.01 |
2386 | 4811 | 5.596836 | TGTTCTGCCTTTTGATTGACTTT | 57.403 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
2387 | 4812 | 5.976458 | TGTTCTGCCTTTTGATTGACTTTT | 58.024 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2388 | 4813 | 7.106439 | TGTTCTGCCTTTTGATTGACTTTTA | 57.894 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2389 | 4814 | 6.978080 | TGTTCTGCCTTTTGATTGACTTTTAC | 59.022 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
2390 | 4815 | 6.959639 | TCTGCCTTTTGATTGACTTTTACT | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2391 | 4816 | 7.346751 | TCTGCCTTTTGATTGACTTTTACTT | 57.653 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2392 | 4817 | 7.781056 | TCTGCCTTTTGATTGACTTTTACTTT | 58.219 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
2393 | 4818 | 8.257306 | TCTGCCTTTTGATTGACTTTTACTTTT | 58.743 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
2394 | 4819 | 8.195617 | TGCCTTTTGATTGACTTTTACTTTTG | 57.804 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
2395 | 4820 | 7.125755 | GCCTTTTGATTGACTTTTACTTTTGC | 58.874 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
2396 | 4821 | 7.336975 | CCTTTTGATTGACTTTTACTTTTGCG | 58.663 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
2397 | 4822 | 7.221838 | CCTTTTGATTGACTTTTACTTTTGCGA | 59.778 | 33.333 | 0.00 | 0.00 | 0.00 | 5.10 |
2398 | 4823 | 8.467402 | TTTTGATTGACTTTTACTTTTGCGAA | 57.533 | 26.923 | 0.00 | 0.00 | 0.00 | 4.70 |
2425 | 4850 | 6.127196 | TGCCTTTTGATTGACTTGTTTTACCT | 60.127 | 34.615 | 0.00 | 0.00 | 0.00 | 3.08 |
2544 | 4969 | 5.012239 | AGTTGATTTAGCTTTGCCTGATGA | 58.988 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
2548 | 4973 | 6.567050 | TGATTTAGCTTTGCCTGATGATTTC | 58.433 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2552 | 4977 | 3.695060 | AGCTTTGCCTGATGATTTCTCTG | 59.305 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
2571 | 5000 | 1.147191 | TGGTATGAGAGGGATAGCCGT | 59.853 | 52.381 | 0.00 | 0.00 | 33.83 | 5.68 |
2591 | 5020 | 0.319728 | ACTGTGATGTTCGAGCTGCT | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2619 | 5048 | 1.195115 | TCCAGGAAATAGCAGCGAGT | 58.805 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2776 | 6497 | 7.986085 | AGGTATACCTGCATTTTGATCATAC | 57.014 | 36.000 | 24.01 | 0.00 | 46.55 | 2.39 |
2777 | 6498 | 7.517320 | AGGTATACCTGCATTTTGATCATACA | 58.483 | 34.615 | 24.01 | 0.00 | 46.55 | 2.29 |
2786 | 6507 | 8.235359 | TGCATTTTGATCATACATTCATACCA | 57.765 | 30.769 | 0.00 | 0.00 | 0.00 | 3.25 |
2787 | 6508 | 8.693625 | TGCATTTTGATCATACATTCATACCAA | 58.306 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
2795 | 6516 | 8.806429 | ATCATACATTCATACCAAGTTTGTCA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
2796 | 6517 | 8.806429 | TCATACATTCATACCAAGTTTGTCAT | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.250597 | GCGGTAGGGTCCTGTGTTTT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1 | 2 | 1.373812 | GCGGTAGGGTCCTGTGTTT | 59.626 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
2 | 3 | 2.590114 | GGCGGTAGGGTCCTGTGTT | 61.590 | 63.158 | 0.00 | 0.00 | 0.00 | 3.32 |
3 | 4 | 3.001406 | GGCGGTAGGGTCCTGTGT | 61.001 | 66.667 | 0.00 | 0.00 | 0.00 | 3.72 |
4 | 5 | 3.000819 | TGGCGGTAGGGTCCTGTG | 61.001 | 66.667 | 0.00 | 0.00 | 0.00 | 3.66 |
5 | 6 | 2.683933 | CTGGCGGTAGGGTCCTGT | 60.684 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
6 | 7 | 4.162690 | GCTGGCGGTAGGGTCCTG | 62.163 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
30 | 31 | 2.038329 | TAGGTGCACCCTACCGCT | 59.962 | 61.111 | 32.29 | 14.48 | 43.87 | 5.52 |
68 | 69 | 6.518493 | TCCAGTGTAAAGTTTCTGTAACGAT | 58.482 | 36.000 | 0.00 | 0.00 | 41.78 | 3.73 |
74 | 75 | 6.207810 | TGTGTTTTCCAGTGTAAAGTTTCTGT | 59.792 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
116 | 117 | 3.851128 | GACCCTACCGCCAGAGCC | 61.851 | 72.222 | 0.00 | 0.00 | 34.57 | 4.70 |
117 | 118 | 3.075005 | TGACCCTACCGCCAGAGC | 61.075 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
151 | 152 | 3.087906 | ACCCTACCGTCATGGGGC | 61.088 | 66.667 | 2.61 | 0.00 | 44.30 | 5.80 |
156 | 157 | 2.537633 | TAGGTTCACCCTACCGTCAT | 57.462 | 50.000 | 0.00 | 0.00 | 43.87 | 3.06 |
180 | 181 | 2.632377 | ACGAAATATGCAGTGGACCTG | 58.368 | 47.619 | 0.00 | 0.00 | 44.53 | 4.00 |
193 | 194 | 5.863397 | CGTACAACCCTTCTGTAACGAAATA | 59.137 | 40.000 | 0.00 | 0.00 | 31.27 | 1.40 |
254 | 255 | 0.040794 | AGGCTGTCTAACCCTACCGT | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
331 | 2409 | 4.108299 | CCATGGCGGTAGGGTGCA | 62.108 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
391 | 2469 | 4.421058 | GGATTTGACCCTTTTGTTATCGC | 58.579 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
455 | 2533 | 2.422597 | GCGGCTAAATTTTGCCCTTTT | 58.577 | 42.857 | 29.80 | 0.00 | 44.58 | 2.27 |
459 | 2537 | 0.177836 | ATGGCGGCTAAATTTTGCCC | 59.822 | 50.000 | 29.80 | 23.17 | 44.58 | 5.36 |
506 | 2584 | 1.610554 | GAATCCCGAGGGGTTGACGA | 61.611 | 60.000 | 12.08 | 0.00 | 44.74 | 4.20 |
528 | 2606 | 1.895231 | GTCCCCGTGCCGACTTTTT | 60.895 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
1264 | 3364 | 1.305297 | ACCTCACTCGCAGGGATGA | 60.305 | 57.895 | 0.00 | 0.00 | 35.01 | 2.92 |
1273 | 3375 | 2.232452 | AGATTCAGTTGGACCTCACTCG | 59.768 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1282 | 3384 | 5.029807 | TGTGTAACACAGATTCAGTTGGA | 57.970 | 39.130 | 0.00 | 0.00 | 45.67 | 3.53 |
1294 | 3396 | 1.745890 | AGCTCGGCTGTGTAACACA | 59.254 | 52.632 | 0.00 | 0.00 | 45.67 | 3.72 |
1295 | 3397 | 4.675404 | AGCTCGGCTGTGTAACAC | 57.325 | 55.556 | 0.00 | 0.00 | 45.67 | 3.32 |
1304 | 3406 | 2.293318 | TGGATCCAACAGCTCGGCT | 61.293 | 57.895 | 13.46 | 0.00 | 40.77 | 5.52 |
1305 | 3407 | 2.109126 | GTGGATCCAACAGCTCGGC | 61.109 | 63.158 | 18.20 | 0.00 | 0.00 | 5.54 |
1306 | 3408 | 0.321564 | TTGTGGATCCAACAGCTCGG | 60.322 | 55.000 | 18.20 | 0.00 | 0.00 | 4.63 |
1307 | 3409 | 1.466167 | CTTTGTGGATCCAACAGCTCG | 59.534 | 52.381 | 18.20 | 0.00 | 0.00 | 5.03 |
1308 | 3410 | 1.200948 | GCTTTGTGGATCCAACAGCTC | 59.799 | 52.381 | 24.44 | 11.15 | 31.58 | 4.09 |
1309 | 3411 | 1.202976 | AGCTTTGTGGATCCAACAGCT | 60.203 | 47.619 | 27.05 | 27.05 | 35.70 | 4.24 |
1310 | 3412 | 1.251251 | AGCTTTGTGGATCCAACAGC | 58.749 | 50.000 | 24.37 | 24.37 | 33.01 | 4.40 |
1311 | 3413 | 3.553508 | CCAAAGCTTTGTGGATCCAACAG | 60.554 | 47.826 | 31.67 | 13.47 | 37.03 | 3.16 |
1312 | 3414 | 2.364970 | CCAAAGCTTTGTGGATCCAACA | 59.635 | 45.455 | 31.67 | 14.14 | 37.03 | 3.33 |
1313 | 3415 | 2.365293 | ACCAAAGCTTTGTGGATCCAAC | 59.635 | 45.455 | 31.67 | 11.54 | 38.36 | 3.77 |
1314 | 3416 | 2.676748 | ACCAAAGCTTTGTGGATCCAA | 58.323 | 42.857 | 31.67 | 4.13 | 38.36 | 3.53 |
1315 | 3417 | 2.380064 | ACCAAAGCTTTGTGGATCCA | 57.620 | 45.000 | 31.67 | 11.44 | 38.36 | 3.41 |
1316 | 3418 | 3.572255 | TGTAACCAAAGCTTTGTGGATCC | 59.428 | 43.478 | 31.67 | 17.27 | 38.36 | 3.36 |
1317 | 3419 | 4.321230 | CCTGTAACCAAAGCTTTGTGGATC | 60.321 | 45.833 | 31.67 | 19.63 | 38.36 | 3.36 |
1318 | 3420 | 3.573967 | CCTGTAACCAAAGCTTTGTGGAT | 59.426 | 43.478 | 31.67 | 18.99 | 38.36 | 3.41 |
1319 | 3421 | 2.955660 | CCTGTAACCAAAGCTTTGTGGA | 59.044 | 45.455 | 31.67 | 16.74 | 38.36 | 4.02 |
1320 | 3422 | 2.545742 | GCCTGTAACCAAAGCTTTGTGG | 60.546 | 50.000 | 31.67 | 23.52 | 41.00 | 4.17 |
1321 | 3423 | 2.545742 | GGCCTGTAACCAAAGCTTTGTG | 60.546 | 50.000 | 31.67 | 25.27 | 36.45 | 3.33 |
1322 | 3424 | 1.686587 | GGCCTGTAACCAAAGCTTTGT | 59.313 | 47.619 | 31.67 | 19.93 | 36.45 | 2.83 |
1323 | 3425 | 1.000843 | GGGCCTGTAACCAAAGCTTTG | 59.999 | 52.381 | 28.69 | 28.69 | 37.90 | 2.77 |
1324 | 3426 | 1.133167 | AGGGCCTGTAACCAAAGCTTT | 60.133 | 47.619 | 4.50 | 5.69 | 0.00 | 3.51 |
1325 | 3427 | 0.482887 | AGGGCCTGTAACCAAAGCTT | 59.517 | 50.000 | 4.50 | 0.00 | 0.00 | 3.74 |
1326 | 3428 | 0.482887 | AAGGGCCTGTAACCAAAGCT | 59.517 | 50.000 | 6.92 | 0.00 | 0.00 | 3.74 |
1327 | 3429 | 0.888619 | GAAGGGCCTGTAACCAAAGC | 59.111 | 55.000 | 6.92 | 0.00 | 0.00 | 3.51 |
1328 | 3430 | 2.586648 | AGAAGGGCCTGTAACCAAAG | 57.413 | 50.000 | 6.92 | 0.00 | 0.00 | 2.77 |
1329 | 3431 | 3.322191 | AAAGAAGGGCCTGTAACCAAA | 57.678 | 42.857 | 6.92 | 0.00 | 0.00 | 3.28 |
1330 | 3432 | 3.396611 | AGTAAAGAAGGGCCTGTAACCAA | 59.603 | 43.478 | 6.92 | 0.00 | 0.00 | 3.67 |
1331 | 3433 | 2.983898 | AGTAAAGAAGGGCCTGTAACCA | 59.016 | 45.455 | 6.92 | 0.00 | 0.00 | 3.67 |
1332 | 3434 | 3.715638 | AGTAAAGAAGGGCCTGTAACC | 57.284 | 47.619 | 6.92 | 0.00 | 0.00 | 2.85 |
1333 | 3435 | 6.487668 | TGTAAAAGTAAAGAAGGGCCTGTAAC | 59.512 | 38.462 | 6.92 | 1.40 | 0.00 | 2.50 |
1334 | 3436 | 6.487668 | GTGTAAAAGTAAAGAAGGGCCTGTAA | 59.512 | 38.462 | 6.92 | 0.00 | 0.00 | 2.41 |
1335 | 3437 | 5.999600 | GTGTAAAAGTAAAGAAGGGCCTGTA | 59.000 | 40.000 | 6.92 | 0.00 | 0.00 | 2.74 |
1336 | 3438 | 4.825634 | GTGTAAAAGTAAAGAAGGGCCTGT | 59.174 | 41.667 | 6.92 | 0.00 | 0.00 | 4.00 |
1337 | 3439 | 4.217767 | GGTGTAAAAGTAAAGAAGGGCCTG | 59.782 | 45.833 | 6.92 | 0.00 | 0.00 | 4.85 |
1338 | 3440 | 4.404640 | GGTGTAAAAGTAAAGAAGGGCCT | 58.595 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
1339 | 3441 | 3.189910 | CGGTGTAAAAGTAAAGAAGGGCC | 59.810 | 47.826 | 0.00 | 0.00 | 0.00 | 5.80 |
1340 | 3442 | 4.067192 | TCGGTGTAAAAGTAAAGAAGGGC | 58.933 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
1341 | 3443 | 6.171213 | AGATCGGTGTAAAAGTAAAGAAGGG | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1342 | 3444 | 8.767478 | TTAGATCGGTGTAAAAGTAAAGAAGG | 57.233 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
1343 | 3445 | 9.420551 | ACTTAGATCGGTGTAAAAGTAAAGAAG | 57.579 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1344 | 3446 | 9.768662 | AACTTAGATCGGTGTAAAAGTAAAGAA | 57.231 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
1345 | 3447 | 9.199982 | CAACTTAGATCGGTGTAAAAGTAAAGA | 57.800 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1346 | 3448 | 9.199982 | TCAACTTAGATCGGTGTAAAAGTAAAG | 57.800 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
1349 | 3671 | 9.715121 | AATTCAACTTAGATCGGTGTAAAAGTA | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1353 | 3675 | 6.311935 | CCGAATTCAACTTAGATCGGTGTAAA | 59.688 | 38.462 | 6.22 | 0.00 | 43.51 | 2.01 |
1373 | 3695 | 1.967319 | ATGATTTACAGCGGCCGAAT | 58.033 | 45.000 | 33.48 | 19.65 | 0.00 | 3.34 |
1378 | 3700 | 5.180117 | ACAGATTCATATGATTTACAGCGGC | 59.820 | 40.000 | 6.17 | 0.00 | 0.00 | 6.53 |
1400 | 3722 | 2.777094 | TGGTTCAGATCAAATCGCACA | 58.223 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
1404 | 3726 | 5.526479 | AGACATCATGGTTCAGATCAAATCG | 59.474 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1446 | 3768 | 7.498900 | TGCCTACCAAATATACTTCATGTCTTG | 59.501 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1449 | 3771 | 6.992715 | ACTGCCTACCAAATATACTTCATGTC | 59.007 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
1450 | 3772 | 6.900194 | ACTGCCTACCAAATATACTTCATGT | 58.100 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1451 | 3773 | 7.931407 | TGTACTGCCTACCAAATATACTTCATG | 59.069 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
1470 | 3870 | 2.028930 | AGGAGCACTGTAGTTGTACTGC | 60.029 | 50.000 | 0.00 | 0.00 | 32.82 | 4.40 |
1475 | 3875 | 2.016905 | AGGAGGAGCACTGTAGTTGT | 57.983 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1518 | 3924 | 4.525487 | ACGTACTACTGGACAATTCTTGGA | 59.475 | 41.667 | 0.00 | 0.00 | 34.12 | 3.53 |
1520 | 3926 | 6.128634 | GGAAACGTACTACTGGACAATTCTTG | 60.129 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
1523 | 3929 | 4.628766 | GGGAAACGTACTACTGGACAATTC | 59.371 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
1532 | 3938 | 3.167485 | TGTCATGGGGAAACGTACTACT | 58.833 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1533 | 3939 | 3.598019 | TGTCATGGGGAAACGTACTAC | 57.402 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
1547 | 3953 | 4.094887 | CGGACTAAAAACCTCCATGTCATG | 59.905 | 45.833 | 5.79 | 5.79 | 0.00 | 3.07 |
1548 | 3954 | 4.019681 | TCGGACTAAAAACCTCCATGTCAT | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1549 | 3955 | 3.325425 | TCGGACTAAAAACCTCCATGTCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
1550 | 3956 | 3.934068 | TCGGACTAAAAACCTCCATGTC | 58.066 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
1551 | 3957 | 4.569719 | ATCGGACTAAAAACCTCCATGT | 57.430 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
1552 | 3958 | 6.995511 | TTAATCGGACTAAAAACCTCCATG | 57.004 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
1592 | 4001 | 2.437359 | AGGGCATTCTGCGACAGC | 60.437 | 61.111 | 2.45 | 0.00 | 46.21 | 4.40 |
1625 | 4034 | 0.514691 | GCTTCTTCAGCTTCACCACG | 59.485 | 55.000 | 0.00 | 0.00 | 46.27 | 4.94 |
1648 | 4057 | 2.192187 | TGCATCGTGCCAGCAACAA | 61.192 | 52.632 | 0.00 | 0.00 | 44.23 | 2.83 |
1669 | 4078 | 4.545208 | TCAGTGACCCGAATTGTAATGA | 57.455 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1771 | 4180 | 3.958147 | ATTGCAGCGTCCTCCACCG | 62.958 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
1789 | 4198 | 2.438021 | AGGGCAATCTTACCTTATGCGA | 59.562 | 45.455 | 0.00 | 0.00 | 37.88 | 5.10 |
1830 | 4249 | 5.405269 | GCCTGAAATAGACGCAATTTTGTTT | 59.595 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1833 | 4252 | 3.543494 | CGCCTGAAATAGACGCAATTTTG | 59.457 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
1852 | 4271 | 1.135402 | CAACCTTGATACTTTGCCGCC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
1897 | 4316 | 1.640670 | ACCAGGGCAAATACAGGTGAT | 59.359 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
1901 | 4320 | 2.214376 | TCAACCAGGGCAAATACAGG | 57.786 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1906 | 4325 | 2.093341 | GCATGATTCAACCAGGGCAAAT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
1951 | 4370 | 9.701098 | CATAATTATTTACAGCCTGCATGATTT | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
1952 | 4371 | 8.863086 | ACATAATTATTTACAGCCTGCATGATT | 58.137 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1953 | 4372 | 8.413309 | ACATAATTATTTACAGCCTGCATGAT | 57.587 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
1954 | 4373 | 7.040478 | GGACATAATTATTTACAGCCTGCATGA | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
1955 | 4374 | 7.086376 | GGACATAATTATTTACAGCCTGCATG | 58.914 | 38.462 | 0.00 | 0.00 | 0.00 | 4.06 |
1956 | 4375 | 6.777091 | TGGACATAATTATTTACAGCCTGCAT | 59.223 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
1957 | 4376 | 6.125719 | TGGACATAATTATTTACAGCCTGCA | 58.874 | 36.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1958 | 4377 | 6.633500 | TGGACATAATTATTTACAGCCTGC | 57.367 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
2025 | 4447 | 9.545105 | TTTTCATATGAACATCACAAGCTTTTT | 57.455 | 25.926 | 17.76 | 0.00 | 33.13 | 1.94 |
2026 | 4448 | 9.715121 | ATTTTCATATGAACATCACAAGCTTTT | 57.285 | 25.926 | 17.76 | 0.00 | 33.13 | 2.27 |
2027 | 4449 | 9.146984 | CATTTTCATATGAACATCACAAGCTTT | 57.853 | 29.630 | 17.76 | 0.00 | 33.13 | 3.51 |
2028 | 4450 | 7.277098 | GCATTTTCATATGAACATCACAAGCTT | 59.723 | 33.333 | 17.76 | 0.00 | 33.13 | 3.74 |
2029 | 4451 | 6.755141 | GCATTTTCATATGAACATCACAAGCT | 59.245 | 34.615 | 17.76 | 0.00 | 33.13 | 3.74 |
2030 | 4452 | 6.019318 | GGCATTTTCATATGAACATCACAAGC | 60.019 | 38.462 | 17.76 | 14.37 | 33.13 | 4.01 |
2031 | 4453 | 7.036829 | TGGCATTTTCATATGAACATCACAAG | 58.963 | 34.615 | 17.76 | 6.16 | 33.13 | 3.16 |
2032 | 4454 | 6.932947 | TGGCATTTTCATATGAACATCACAA | 58.067 | 32.000 | 17.76 | 8.82 | 33.13 | 3.33 |
2033 | 4455 | 6.527057 | TGGCATTTTCATATGAACATCACA | 57.473 | 33.333 | 17.76 | 13.69 | 33.13 | 3.58 |
2034 | 4456 | 5.461078 | GCTGGCATTTTCATATGAACATCAC | 59.539 | 40.000 | 17.76 | 11.56 | 33.13 | 3.06 |
2035 | 4457 | 5.127356 | TGCTGGCATTTTCATATGAACATCA | 59.873 | 36.000 | 17.76 | 10.70 | 33.13 | 3.07 |
2036 | 4458 | 5.593968 | TGCTGGCATTTTCATATGAACATC | 58.406 | 37.500 | 17.76 | 8.42 | 33.13 | 3.06 |
2037 | 4459 | 5.601583 | TGCTGGCATTTTCATATGAACAT | 57.398 | 34.783 | 17.76 | 13.94 | 33.13 | 2.71 |
2038 | 4460 | 5.402997 | TTGCTGGCATTTTCATATGAACA | 57.597 | 34.783 | 17.76 | 12.12 | 33.13 | 3.18 |
2039 | 4461 | 6.913873 | AATTGCTGGCATTTTCATATGAAC | 57.086 | 33.333 | 17.76 | 6.46 | 33.13 | 3.18 |
2040 | 4462 | 9.263538 | GATAAATTGCTGGCATTTTCATATGAA | 57.736 | 29.630 | 14.23 | 14.23 | 33.42 | 2.57 |
2041 | 4463 | 8.422566 | TGATAAATTGCTGGCATTTTCATATGA | 58.577 | 29.630 | 15.52 | 0.00 | 33.42 | 2.15 |
2042 | 4464 | 8.596271 | TGATAAATTGCTGGCATTTTCATATG | 57.404 | 30.769 | 15.52 | 0.00 | 33.42 | 1.78 |
2043 | 4465 | 9.214957 | CATGATAAATTGCTGGCATTTTCATAT | 57.785 | 29.630 | 15.52 | 7.27 | 33.42 | 1.78 |
2044 | 4466 | 7.658167 | CCATGATAAATTGCTGGCATTTTCATA | 59.342 | 33.333 | 15.52 | 6.91 | 33.42 | 2.15 |
2045 | 4467 | 6.485313 | CCATGATAAATTGCTGGCATTTTCAT | 59.515 | 34.615 | 15.52 | 12.26 | 33.42 | 2.57 |
2046 | 4468 | 5.818336 | CCATGATAAATTGCTGGCATTTTCA | 59.182 | 36.000 | 15.52 | 10.93 | 33.42 | 2.69 |
2047 | 4469 | 5.237779 | CCCATGATAAATTGCTGGCATTTTC | 59.762 | 40.000 | 15.52 | 6.77 | 33.42 | 2.29 |
2048 | 4470 | 5.104444 | TCCCATGATAAATTGCTGGCATTTT | 60.104 | 36.000 | 16.08 | 16.08 | 34.94 | 1.82 |
2049 | 4471 | 4.409574 | TCCCATGATAAATTGCTGGCATTT | 59.590 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2050 | 4472 | 3.968649 | TCCCATGATAAATTGCTGGCATT | 59.031 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
2051 | 4473 | 3.322828 | GTCCCATGATAAATTGCTGGCAT | 59.677 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
2052 | 4474 | 2.694628 | GTCCCATGATAAATTGCTGGCA | 59.305 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
2053 | 4475 | 2.036346 | GGTCCCATGATAAATTGCTGGC | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2054 | 4476 | 2.629617 | GGGTCCCATGATAAATTGCTGG | 59.370 | 50.000 | 1.78 | 0.00 | 0.00 | 4.85 |
2055 | 4477 | 3.319972 | CAGGGTCCCATGATAAATTGCTG | 59.680 | 47.826 | 11.55 | 0.00 | 0.00 | 4.41 |
2056 | 4478 | 3.569491 | CAGGGTCCCATGATAAATTGCT | 58.431 | 45.455 | 11.55 | 0.00 | 0.00 | 3.91 |
2057 | 4479 | 2.036346 | GCAGGGTCCCATGATAAATTGC | 59.964 | 50.000 | 11.55 | 3.81 | 0.00 | 3.56 |
2058 | 4480 | 3.569491 | AGCAGGGTCCCATGATAAATTG | 58.431 | 45.455 | 11.55 | 0.00 | 0.00 | 2.32 |
2059 | 4481 | 3.979501 | AGCAGGGTCCCATGATAAATT | 57.020 | 42.857 | 11.55 | 0.00 | 0.00 | 1.82 |
2060 | 4482 | 3.979501 | AAGCAGGGTCCCATGATAAAT | 57.020 | 42.857 | 11.55 | 0.00 | 0.00 | 1.40 |
2061 | 4483 | 4.415179 | TGATAAGCAGGGTCCCATGATAAA | 59.585 | 41.667 | 11.55 | 0.00 | 0.00 | 1.40 |
2062 | 4484 | 3.980022 | TGATAAGCAGGGTCCCATGATAA | 59.020 | 43.478 | 11.55 | 0.00 | 0.00 | 1.75 |
2063 | 4485 | 3.597182 | TGATAAGCAGGGTCCCATGATA | 58.403 | 45.455 | 11.55 | 0.00 | 0.00 | 2.15 |
2064 | 4486 | 2.421725 | TGATAAGCAGGGTCCCATGAT | 58.578 | 47.619 | 11.55 | 1.19 | 0.00 | 2.45 |
2065 | 4487 | 1.891933 | TGATAAGCAGGGTCCCATGA | 58.108 | 50.000 | 11.55 | 0.00 | 0.00 | 3.07 |
2066 | 4488 | 2.107031 | TGATGATAAGCAGGGTCCCATG | 59.893 | 50.000 | 11.55 | 6.84 | 0.00 | 3.66 |
2067 | 4489 | 2.421725 | TGATGATAAGCAGGGTCCCAT | 58.578 | 47.619 | 11.55 | 0.00 | 0.00 | 4.00 |
2068 | 4490 | 1.891933 | TGATGATAAGCAGGGTCCCA | 58.108 | 50.000 | 11.55 | 0.00 | 0.00 | 4.37 |
2069 | 4491 | 3.515602 | ATTGATGATAAGCAGGGTCCC | 57.484 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
2070 | 4492 | 7.624549 | TCTATAATTGATGATAAGCAGGGTCC | 58.375 | 38.462 | 0.00 | 0.00 | 0.00 | 4.46 |
2071 | 4493 | 9.678260 | ATTCTATAATTGATGATAAGCAGGGTC | 57.322 | 33.333 | 0.00 | 0.00 | 0.00 | 4.46 |
2091 | 4513 | 8.830580 | CGAGTAATTCATGGTGAACAATTCTAT | 58.169 | 33.333 | 0.00 | 0.00 | 39.45 | 1.98 |
2092 | 4514 | 8.038351 | TCGAGTAATTCATGGTGAACAATTCTA | 58.962 | 33.333 | 0.00 | 0.00 | 39.45 | 2.10 |
2093 | 4515 | 6.878923 | TCGAGTAATTCATGGTGAACAATTCT | 59.121 | 34.615 | 0.00 | 0.00 | 39.45 | 2.40 |
2094 | 4516 | 7.064609 | TCTCGAGTAATTCATGGTGAACAATTC | 59.935 | 37.037 | 13.13 | 0.00 | 39.45 | 2.17 |
2095 | 4517 | 6.878923 | TCTCGAGTAATTCATGGTGAACAATT | 59.121 | 34.615 | 13.13 | 0.00 | 39.45 | 2.32 |
2096 | 4518 | 6.406370 | TCTCGAGTAATTCATGGTGAACAAT | 58.594 | 36.000 | 13.13 | 0.00 | 39.45 | 2.71 |
2097 | 4519 | 5.789521 | TCTCGAGTAATTCATGGTGAACAA | 58.210 | 37.500 | 13.13 | 0.00 | 39.45 | 2.83 |
2315 | 4737 | 6.861065 | TTTAGAGTCAGATGTGGTTGAAAC | 57.139 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
2318 | 4740 | 9.739276 | ATTTTATTTAGAGTCAGATGTGGTTGA | 57.261 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2321 | 4743 | 9.965902 | AGAATTTTATTTAGAGTCAGATGTGGT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 4.16 |
2368 | 4793 | 8.330302 | CAAAAGTAAAAGTCAATCAAAAGGCAG | 58.670 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
2370 | 4795 | 7.125755 | GCAAAAGTAAAAGTCAATCAAAAGGC | 58.874 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
2373 | 4798 | 8.467402 | TTCGCAAAAGTAAAAGTCAATCAAAA | 57.533 | 26.923 | 0.00 | 0.00 | 0.00 | 2.44 |
2374 | 4799 | 8.641499 | ATTCGCAAAAGTAAAAGTCAATCAAA | 57.359 | 26.923 | 0.00 | 0.00 | 0.00 | 2.69 |
2375 | 4800 | 8.538856 | CAATTCGCAAAAGTAAAAGTCAATCAA | 58.461 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2376 | 4801 | 7.306515 | GCAATTCGCAAAAGTAAAAGTCAATCA | 60.307 | 33.333 | 0.00 | 0.00 | 41.79 | 2.57 |
2377 | 4802 | 7.003648 | GCAATTCGCAAAAGTAAAAGTCAATC | 58.996 | 34.615 | 0.00 | 0.00 | 41.79 | 2.67 |
2378 | 4803 | 6.073819 | GGCAATTCGCAAAAGTAAAAGTCAAT | 60.074 | 34.615 | 2.98 | 0.00 | 45.17 | 2.57 |
2379 | 4804 | 5.233263 | GGCAATTCGCAAAAGTAAAAGTCAA | 59.767 | 36.000 | 2.98 | 0.00 | 45.17 | 3.18 |
2380 | 4805 | 4.742659 | GGCAATTCGCAAAAGTAAAAGTCA | 59.257 | 37.500 | 2.98 | 0.00 | 45.17 | 3.41 |
2381 | 4806 | 4.982295 | AGGCAATTCGCAAAAGTAAAAGTC | 59.018 | 37.500 | 0.00 | 0.00 | 45.17 | 3.01 |
2382 | 4807 | 4.944048 | AGGCAATTCGCAAAAGTAAAAGT | 58.056 | 34.783 | 0.00 | 0.00 | 45.17 | 2.66 |
2383 | 4808 | 5.905480 | AAGGCAATTCGCAAAAGTAAAAG | 57.095 | 34.783 | 0.00 | 0.00 | 45.17 | 2.27 |
2384 | 4809 | 6.313905 | TCAAAAGGCAATTCGCAAAAGTAAAA | 59.686 | 30.769 | 0.00 | 0.00 | 45.17 | 1.52 |
2385 | 4810 | 5.812642 | TCAAAAGGCAATTCGCAAAAGTAAA | 59.187 | 32.000 | 0.00 | 0.00 | 45.17 | 2.01 |
2386 | 4811 | 5.352284 | TCAAAAGGCAATTCGCAAAAGTAA | 58.648 | 33.333 | 0.00 | 0.00 | 45.17 | 2.24 |
2387 | 4812 | 4.938080 | TCAAAAGGCAATTCGCAAAAGTA | 58.062 | 34.783 | 0.00 | 0.00 | 45.17 | 2.24 |
2388 | 4813 | 3.791245 | TCAAAAGGCAATTCGCAAAAGT | 58.209 | 36.364 | 0.00 | 0.00 | 45.17 | 2.66 |
2389 | 4814 | 4.996062 | ATCAAAAGGCAATTCGCAAAAG | 57.004 | 36.364 | 0.00 | 0.00 | 45.17 | 2.27 |
2390 | 4815 | 4.813161 | TCAATCAAAAGGCAATTCGCAAAA | 59.187 | 33.333 | 0.00 | 0.00 | 45.17 | 2.44 |
2391 | 4816 | 4.210955 | GTCAATCAAAAGGCAATTCGCAAA | 59.789 | 37.500 | 0.00 | 0.00 | 45.17 | 3.68 |
2392 | 4817 | 3.740321 | GTCAATCAAAAGGCAATTCGCAA | 59.260 | 39.130 | 0.00 | 0.00 | 45.17 | 4.85 |
2393 | 4818 | 3.005684 | AGTCAATCAAAAGGCAATTCGCA | 59.994 | 39.130 | 0.00 | 0.00 | 45.17 | 5.10 |
2394 | 4819 | 3.578688 | AGTCAATCAAAAGGCAATTCGC | 58.421 | 40.909 | 0.00 | 0.00 | 41.28 | 4.70 |
2395 | 4820 | 4.984161 | ACAAGTCAATCAAAAGGCAATTCG | 59.016 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
2396 | 4821 | 6.849588 | AACAAGTCAATCAAAAGGCAATTC | 57.150 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2397 | 4822 | 7.628769 | AAAACAAGTCAATCAAAAGGCAATT | 57.371 | 28.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2398 | 4823 | 7.226523 | GGTAAAACAAGTCAATCAAAAGGCAAT | 59.773 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2425 | 4850 | 3.298619 | ACATATGCTAATTGCTGCCCAA | 58.701 | 40.909 | 1.58 | 0.00 | 43.37 | 4.12 |
2441 | 4866 | 4.865905 | TGGGCAGGTTAATGTGAACATAT | 58.134 | 39.130 | 0.00 | 0.00 | 35.10 | 1.78 |
2442 | 4867 | 4.308526 | TGGGCAGGTTAATGTGAACATA | 57.691 | 40.909 | 0.00 | 0.00 | 35.10 | 2.29 |
2513 | 4938 | 6.368516 | GGCAAAGCTAAATCAACTGCATTAAA | 59.631 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
2544 | 4969 | 5.483583 | GCTATCCCTCTCATACCAGAGAAAT | 59.516 | 44.000 | 0.00 | 0.00 | 43.58 | 2.17 |
2548 | 4973 | 3.096092 | GGCTATCCCTCTCATACCAGAG | 58.904 | 54.545 | 0.00 | 0.00 | 39.89 | 3.35 |
2552 | 4977 | 1.926108 | ACGGCTATCCCTCTCATACC | 58.074 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2571 | 5000 | 1.546029 | AGCAGCTCGAACATCACAGTA | 59.454 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2591 | 5020 | 1.776667 | CTATTTCCTGGATCCCTGGCA | 59.223 | 52.381 | 9.90 | 0.00 | 41.59 | 4.92 |
2619 | 5048 | 5.794894 | CAGCCAGTTCCTACTTCTTTTCTA | 58.205 | 41.667 | 0.00 | 0.00 | 30.26 | 2.10 |
2707 | 6428 | 8.992073 | ACATCAAGAAATAAAGGTTGCATTTTC | 58.008 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2761 | 6482 | 8.235359 | TGGTATGAATGTATGATCAAAATGCA | 57.765 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
2762 | 6483 | 9.188588 | CTTGGTATGAATGTATGATCAAAATGC | 57.811 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2767 | 6488 | 9.241919 | ACAAACTTGGTATGAATGTATGATCAA | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2768 | 6489 | 8.806429 | ACAAACTTGGTATGAATGTATGATCA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 2.92 |
2769 | 6490 | 8.892723 | TGACAAACTTGGTATGAATGTATGATC | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
2770 | 6491 | 8.806429 | TGACAAACTTGGTATGAATGTATGAT | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
2771 | 6492 | 8.806429 | ATGACAAACTTGGTATGAATGTATGA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.