>input_sequence_68601
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-------------------------------------ATGGAGATGTGGAAATATCGGGTCGTAGGATCGGTGGCTGCCC
TGCTCTTGCTACTCGCCGTCGTCGTGCCGTTTACTCAGACCCAGACGCAGAGCGCACGGGACAAGGCTGCCATGGCGGAA
GACGCAGGGCCGTTGGTGGGAGGCATCAAGGACTCGCCGATGGGGCAAGAGAACGACCTCGACGTCATCGCGCTCGCCCG
CTTCGCCGTCTCCGAGCACAACAACAAGGCCGTAAGCCCTCG--------CTACCCCCCTCTCTC--------------A
TGTTCATCCC--TGCGAGTGAGGTCCAACTGAATCTGTGTTACACAGCCGAGCTGTTGGATCCACAAAGCTTTGGTTACA
GGCCCTTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTACTTTTACA
CCGATCTAAGTTGAATTCGGCCGCTGTAAATCATATGAATCTGTGCGATTTGATCTGAACCATGATGTCTTTTTTCGCAA
CAAAAAGCAAGACATGAAGTATA---------------------------------------------------------
---------------------TTTGGTAGGCAGTACAACTACAGTGCTCCTCCTATATTTACCGGG------TTTGTATT
TGTTCCAAGAATTGTCCAGTAGTACGTTTCCCCATGAC---ATGGAGGTTTTTAGTCCGATTAATAATTTTGGCGCTGCC
GCTGTCGCAGAATGCCCTGCTGGAGTTCGAGAACGTGGTGAAGCTGAAGAAGCAAATTGTTGCTGGCACGATGCACTTCA
TTACAATTCGGGTCACTGAAGGTGGGGCCAAGAAGCTCTATGAAGCTAAGGTGTGGGAGAAACCATGGGAGAACTTTAAG
AAGCTCGAGGAGTTCAAGCCGGTGGAGGACGCTGCAATCG-------CATAA----------------------------
--------------------------------------------------------------------------------
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-------------------------------------
>chr3D_1_TraesCS3D01G325100
AAAACACAGGACCCTACCGCCAGCCCCCATAGCGGTAGGGTGCACCTACCGCCAGGGCCCTTGCACTTATCGTTACAGAA
ACTTTACACTGGAAAACACAGGACCCTACCGCCAGGGGCTCTGGCGGTAGGGTCACACAGCCTACCGCCAGGCCCCATGA
CGGTAGGGTGAACCTACCGCCAGGTCCACTGCATATTTCGTTACAGAAGGGTTGTACGGCAAAACCCTGCCACACCCTAC
CGCCAGGGGCTCTGACGGTAGGGTTAGACAGCCTACCGCCAGG-------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------GGTACTTATCCACGTCAGCGCAGTCAAACGGCCGCCGTCC
CCCTCCGTTGCACCCTACCGCCATGGGCCGTGGCGGTAGGCTGTATAACCCTACCGTCAGAGCCTCTGGCGATAACAAAA
GGGTCAAATCCCGAATTTTTTTGCAACCGGGGTCAGATCCTAAATTTCTTAAAAAAGGGCAAAATTTAGCCGCCATTGGC
GATAGCATAGCGTGTTGCGCAGGTCGTCAACCCCTCGGGATTCGGAAAAAGTCGGCACGGGGACGTGGTAGGGCCCGACG
ATCCTATTCCATCCGCTCCCGTGTCCCGTCCAGACTCCGGAGTGTCCCCACGCAATAATNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTATAAATCCCGACCCCGATCGATCGATGGAGATGTGGAAATATCGGGTCGTAGGATCGGTGGCTGCCC
TGCTCTTGCTACTCGCCGTCGTCGTGCCGTTTACTCAGACCCAGACGCAGAGCGCACGGGACAAGGCTGCCATGGCGGAA
GACGCAGGGCCGTTGGTGGGAGGCATCAAGGACTCGCCGATGGGGCAAGAGAACGACCTCGACGTCATCGCGCTCGCCCG
CTTCGCCGTCTCCGAGCACAACAACAAGGCCGTAAGCCCTCG--------CTACCCCCCTCTCTC--------------A
TGTTCATCCC--TGCGAGTGAGGTCCAACTGAATCTGTGTTACACAGCCGAGCTGTTGGATCCACAAAGCTTTGGTTACA
GGCCCTTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTACTTTTACA
CCGATCTAAGTTGAATTCGGCCGCTGTAAATCATATGAATCTGTGCGATTTGATCTGAACCATGATGTCTTTTTTCGCAA
CAAAAAGCAAGACATGAAGTATA---------------------------------------------------------
---------------------TTTGGTAGGCAGTACAACTACAGTGCTCCTCCTATATTTACCGGG------TTTGTATT
TGTTCCAAGAATTGTCCAGTAGTACGTTTCCCCATGAC---ATGGAGGTTTTTAGTCCGATTAATAATTTTGGCGCTGCC
GCTGTCGCAGAATGCCCTGCTGGAGTTCGAGAACGTGGTGAAGCTGAAGAAGCAAATTGTTGCTGGCACGATGCACTTCA
TTACAATTCGGGTCACTGAAGGTGGGGCCAAGAAGCTCTATGAAGCTAAGGTGTGGGAGAAACCATGGGAGAACTTTAAG
AAGCTCGAGGAGTTCAAGCCGGTGGAGGACGCTGCAATCG-------CATAAGGTAAGATTGCCCTCTGTTTCACACTGA
A---CGTCAAACAAAATTGCGTCTATTTCAGGCGGCAAAGTATCAAGGTTGATTCTTGTTTCAAGAGCATATCATATCAC
CTGTATTTGCCCTGGTTGAATCATGCAGGCTGTACATTTTCAAAAAAAAAAATCATGCAGGCTGTAAATAATTATGTCCA
TAAGTTTCTTTATT---GATCATCAGGACTATAAGGTCAACTTCTAAAAAAGCTTGTGATGTTCATATGAAAATGCCAGC
AATTTATCATGGGACCCTGCTTATCATCAATTATAGAATTGTTCACCATGAATTACTCGAGATTATTAAGACACATGATG
TTTAGAACCTTGTTCGCCATTTGTTTGTAGAGAATTGATTTGTTAATCTAAATAATTTCAGGCGCGTCCCAGCTTTGCAA
GGATCTGCAGCTATGGTGTTGATGTAGCTATCTATCGGACATGGTTTAGCGTGTTCTCGTGTAATATCAAGAATAAGTCC
GCTTCTTGCAAGCTGTGTTTCAACCACATCTGACTCTAAATAAAATTCTC---AGTATTATTGTATTTTGTTCTGCCTTT
TGATTGACTTTTACTTTTGCGAATTGCCTTTTGATTGACTTGTTTTACCTTGGGCAGCAATTAGCATATGTTCACATTAA
CCTGCCCATTATATCTGACCGTTAGAATTTCAGATGGTTTAGCTTAAAAAAAGCATATTTAATGCAGTTGATTTAGCTTT
GCCTGATGATTTCTCTG----GTATGAGAGGGATAGCCGTACTGTGATGTTCGAGCTGCTGCCAGGGATCCAGGAAATAG
CAGCGAGTAGAAAAGAA-------GTAGGAACTGGCTGCTTGTTTGATAACTGCATTAGTGTAGCAA-----------TG
AAAGAGGAATGCAA------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------ACTATAGTTTGTATGTAAAGAAAATGCAACCTTTATTTCTTGATGTACCCTTTGGCTCAACATAAGGTATAC
CTGCATTTTGATCATACATTCATACCAAGTTTGTCAT
>chr5D_11
----------ACCCTACCGCCAGCCCCCATGGCGGTAGGGCGCACCTACCGCCAGGGCCCTTGCACTTTTCGTTTCAGAA
ACTTTACACTGGAAAACACAGGACCCTACCGCCAGGATCTCTGGCGGTAGGGTCACACAGCCTACCGCCAGACCCCTTGG
CGATAGGGTGAACCTACCGCGAGGTCCACTGCACATTTCGTTACAGAAGGGTTGTATGGCAAAACCCTGCCACACCCTAC
CGCCAGGGGCTCTGGCGGTAGGGTTAGACAGCCTACCGCCAGGCCCCCTGGCGGTAGGTACTTTTTTTTTCTCGAATACG
CACGAGTGTGCGTACTATATATTAAAGGAAGAGGGTGGGGACAAGAGCCTGTCCACGTTGGCGTTCACATGTTGCAATGT
TACATGCGGACCAACCCCGCCGGCTTAGCCGTGTACTACCAAAGCCTAACTTCTCCCCTCAGCCCACCTAACTAAACCTT
CCAGAAGAGGTTCTACGCTGCCTTTGAAGATGCCGGCTTGCTTCCATGCGCGTCCCTCGGTGTCAATTCTACTCACGAGC
GTCTTCGAAGAGAGGGATGCGCCATCGAAGACGATCGCGTTTCGGTGCTTCCAAATTTCCCACAACACTAACAACAGCAA
TGTGCGTGTGTCCTTCGTCGCTGGCCCAAGAGTAGCTGTGACGGCGCCCCAGTCCCGCAGCCTCGATTCCGGGCTCGGCG
TCCACTGTGGCCTACCGAGAGCTCCACAAATGACATGCCAAACATCCCTCACGAAGACACAACCCAAAAGGAGATGATCG
ATGGTCTCTTCGTGCTGGTCACAGAAGGGGCACGCCTCTTGGTGGTCCAAGCCTCGCCTCGCGAGTCTGTCCGAGGTCCA
GCACCTGTTGTGCATCGCCAGCCAGAGAAAGAAACGGCAACGGAGCGGGGCCTTTGATTTCCACGTGAATTCTGCCGTCG
GCTCTACCTCCCGCCCCACAAACCGGGCCTCGTAAGCAGATTTAGTGGAGTAGTCCCCATTGGCCTCCCAACTCTAGGTC
ATGCGGTCCGGTTCTGCCGGTCTGAGCGCCATGTTACTTACCCGGTCCCAAAGGCTCATGTATTCATTCAACTGCTCGCT
GGAGAGGTCGGGGCCGATGTCTAAAGCCCAGTCTCCTGTTGAAACCGCCTGATGGACCGTCCGAGAACCCCGCGCACTGG
GAGCGACAATTGCATATATGGATGGGGCAAGGTCTTGGACCGTAAAGCCGCCGAGCCACCGATCTTCCCAGAAGCGGGCG
CACTTGCCATCGCCTAGCATAGTTTTTGTGGCTGCCCTGAAGAGTTGCCGCGATTCCACAAGAACTGTAATTTGGAATTC
CGCCCATGGTCGGGACTGATCTGTGTGCTGGAGCCAGAGCCATCGGGCCTGAATAGCTATGTTCAGCCACCGGAGGTTGG
GAAGGCCCAAGCCGCCCGCCCACTTGGGTGCGCAAACGGCCTCCCAGGCAACTCTGCACTGCCCACCATTGGCGCTCGCG
CGGGCGCACCAGAGGAAGCCCCTGCAAATTCTTCTCATGGCTTTGAGCACCTTCTGAGGAATGTCAAGCGCCATCATTGC
GTGGATCGGAGTTGCACAGAGGACCGATTTGATCAACAGAAGGCGGCCACTCTTCGGCATGGAGGTGGCCCTCCAAGTTG
GCAGTTTGCGTGCAAGACAATCCACGAGCCCCATCAGCTGAGCCGACGTTTGTTTCTGAATTGTAAGCGGTAGGCCGAGG
TATTTGCAAGGATATACACCCGTCGGGCATCCCAGGATTTGCTCCACTCGTTCCATGTCAGTTGTAGTGCATCGAATGGG
CAATGCCATGCTTTTGGAGAGGTTCACCATAAGGCCCGAAGCCTCTCCAAAGCTGTGAAGGATCATAGCACTTGCCCGCA
GGTCAGCGTCTTTCGGTTTGACAAAGAGCATCACATCGTCAGCAAACAACGAGAGTCGCTGCTGCAGCCCAAGCCTGGCC
AGCGAAGACAGGATGGCACGAGATGCGGCCATCTGGAACATCTTGTGCAGCGGCTCCATAGCTAAGATGAAGAGCATTGG
CGAGAGGGGCGCGCCCTATCGCATGCCCCTGGCATTGAAGATTGGCCTGCCGGGGTGTCCGTTTACCATGATCTGTGTCG
AAGAGGTGGCCAAAAGTCCACACACCCACTCAATCCACCTCGCACCAAAGCCCATTGCCCGCAGCACCTCGAGAAGAAAA
GGCCATTGAACCGTGTCGAATGCTTTCGTGATATCCAACTTGAGCATCACCGTGGGTTCACGAAGGGCATGCAATCGACG
CGCCATGCATTGGACCAACATGAAATTGTCGTCGGCGGTAGGTACTTATCCACGTCAGCGTAGTCAAACGGCCGCCGTCC
CCCTCCGTCGCACCCTACCGCCATGAACCGTGGCGGTAGGCTGTATAACCCTACCGCCAAAGCCTCTGACGGTAATAAAA
GGGTTAAATCCCCAATTTTTTTGCAACCGGGGTCAGATCCTGAATTTCTTAAGAAAAGGGTCAAAA--------------
--------------------------------------------------------------------------------
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>chr3B_474
--------------------------------------------------------------------------------
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----------------------------------------------------------------------CGCCATTGGC
GATAGCATAGCGTGTTACGCAGGCTGTCAACCCCTCGGGATTCGGGAAAAGTCGGAGCGGGGACGTGGTAGGACCCGACG
ATCCTATTCCATCCGCTCCCGTGTCCCGTCCAGACTCCGGAGTGTCCCCACACAATAATACATCGCCGACGGATCGTATC
CTCCTCCCCCTGCCCTGCCGCTGCAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CTATAAATCCCGACCCCGATCGATCGATGGAGATGTGGAAATATCGGGTCGTAGGATCGGTGGCCGCCC
TGCTCTTGCTACTCGCCATCGTCGTGCCGTTTACTCAGACCCGGACGCAGAGCGCACGGGACAAGGCTGCCATGGCGGAA
GACGCGGGGCCGTTGGTGGGAGGCATCAAGGACTCGCCGATGGGCCAGGAGAACGACCTCGACGTCATCGCGCTCGCCCG
CTTCGCCGTCTCCGAGCACAACAACAAGGCCGTAAGCCCCCTCGCTACCCCTACCCCCCTCTCTCTCTTTCTCTCTGTCA
TGTCCATCCCTGTGTGAGTGAGGCCCA-----------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------ACTCATGA---------------------------------------------
---------------------------------------TGTTTACCATGAATTACTCGAGATTATTAAGACACATGATG
TTTAGAACCTTGTTCGCCATTTGTTTGTAGAGAATTGATTTGTTAATCTGAATAATTTCAGGCGCGCCCCAGCTTTGCAA
GGATCTGCAGCTATGGTGTTGATGCAGCTATCAATCGGACATGGTTTAGCGTGTTCTCGTGTAATATCAAGAATAAGTCC
GCTTCTTGCAAGTTGTTTTAACCACGT------CTCTAAATAAAATTCTCTGCAGTATTATTGTACTATTCCGTT-----
-----------------------TTGCCTTTTGATTGACTTGTCTTACCCTGGGCAGCAATTAGC--ATGTTCACATTAA
CCTGCCCATTATATCTGACCGTTAGAATTTCAGACGGTTTAGCTTAAATGCATA----TTTATGCAGTTGATTTAGCTTT
GCCTGATGGTTTGTCTAGTACGTATGAGAGGTATAGCCGCACTGTGATGTTCGAGCTGCGGCCAGGGATCCATGAAATAG
CAGCGAGCAGAAAAGAA-------GTAGGAACTGGCTGCTTGTTTGATAACTGCATTAGTGTAG---------------G
ATAGAGGAATGCAA------------------------------------------------------------------
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--------A-TATACTTTGTATGTAGA-AAAATGCAACCTTTATTTCTTGATGTA-------------------------
-------------------------------------
>chr3A_474
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----------------------------------------------------------------------CGCCATTGGC
GATAGCATAGCGTGTTACGCAGGCCGTCAACCCCTCGGGATTGGGGAAAAGTCGGCACGGGGACGTGGTAGGGCCCGACG
ATCCTATTCCATCCGCTCCCGTGCCCCGTCCAGACTCCGGAGTGTCCCCACACAATAATACACCGCCGACGGATTGTATC
CCTCCTCCCCTGCTCTGCCGCTGCAG------------------------------------------------------
--------------------------------------------------------------------------------
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-----------CTATAAATCCCGACCCCGATCGATCGATGGAGATGTGGAAATATCGGGTCGTGGGATCGGTTGCTGCCC
TCCTCTTGCTACTCGCCATCGTCGTGCCGTTTACTCAGACCCAGACGCAGAGCGCACGGGACAAAGCTGCCATGGCGGAA
GACGCGGGGCCGCTGGTGGGAGGCATCAGTGACTCGCCGATGGGGCAAGAAAACGACCTCGACGTCATCGCGCTCGCCCG
CTTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTATTACA
CCGATCTAAGTTGAGTTCGACCGCTGTAAATCATATGAATCAGTGTGATTTGATCTGAACCATGATGTCTTTTTTCGCAA
CAAAAAGAAAA--ATGAAGTATAGTACTCCGCCCGTCCCAAAATAAATGTCCCTTAGTACAACTTTGTACTAGAGACACT
TATTTTGGGATAGAGGGAGTATTTGGTAGTCAGTCCAACTACAGTGCTCCTCCTATATTTACCTGATTTGTATTTGTATT
TGTGCTAATAATTGTCC--TAGTACGTTTCTCGCCATGACAATGGAGGTTTTTAGTCCGATTGATAATTTTGGTGCTGCC
CCTGTCGCAGAATGCCCTGCTGGAGTTCGAGAATGTGGTGAAGGTGAAGAAGCAAACTGTTGCTGGCACGATGCACTACA
TTACAATCCGGGTCACTGAAGGTGGGGCCAAGAAGCTCTATGAAGCTAAGGTGTGGGAGAAACCATGGGAGAACTTTAAG
AAGCTCGAGGAGTTCAAGCTGGTGGAGGACGTTCCAAGCGCATAACTCATAAGGTAAGATTTCCCTCTGTTTCACACTGA
ATACCGTCGAATAAAATTGCGTCTATTTCATGCGGCAAAGTATCAAGGTTGATTCTTGTTTCAAGAGCATATCATCTCAG
CTGTGTTTGCCCTGGTTGAATCATGCAGGCTGTG--------------------------------AATAACTATGTCCA
TAAGTTTCTTTATTATTGATCATCAGGACACATGA---------------------------------------------
---------------------------------------TGTTAACCATGAATTACTAGAGATTATTAAGACACATGATG
TTTAGAACCTTGTTCGCCATTTGTTTGTAGAGAATTGATTTGTTAATCTAAATAATTTCAGGCGCGTCCCAGCTTTGCAA
GGATCTGCAGCTATGGTGTTGATGTAGCTATCTATCGGACATGGTTTAGCGTGTTCTCGTGTAATATCAAGAATAAGTCC
GCTTCTTGCAAGTTGTTTTAACCACAT------CTCTAAATAAAATTCTC---AGTATTATTGTATTTTGTTTTTCC---
-----------------------------TTTGATCGACTTGTTTTACCCTGGGCAGCAATTAGC--A---TCACATTAG
CCTGCCCATTATATCTGACCATTAGAGTTTGAGATGGTTTAGCTTAAAAAAAGCATAATTATTGCAGTTGATTTAGCTTT
GCCTGATATGGTTTCTCCA--GTATAAGAGGGATAGCCGCACTGTGATGTTCGAGCTGCGGCCAGGGATCCAGGAAATAG
CAGCGAGCAGAAAAGAAGTAGGAAGTAGGAACTGGCTGCTTATTTGATAACTGCATTAGTGTAGCAATGATACATGCATG
AAAGAGGAATGCAAGGAACATTCAGGTTGTTGGTAACTGCTTAAGCTTCGGTGAGGGAGGCAGCTAGGGTTCCCCCTCCT
CCCCTCCCACCGCCGCCGGCCTCGCGCCCTGCCTCCGTCCCCTTCAGCCCTCCCCCTTCCCCTGTCCAGATCCGCCTCCT
CGGGAGGTGGCCGGGGCGGAGCTCAAGCTCCTCACCTGCGGGCCCCTCCTCCCGCGTCTCCCCCTGCCGCTGCCGGCGGA
CGCCCCCGGCGCTGGCCCGGGTGGTGCCGCAGGCGGCGGACCTTCTTGTCCCTACGCGCGCGTGCTCCCTTCTCGGGGCA
GGGAGGCGGTGGCGGTGCAGCCTGGCTTGACTGCGGTCCGGCGGCCCTGCGGCGGCGGCCGACGGCAAGCGTGGTGTCGG
CGCCGCTCCTTGGCGGCAGGGCAGCGTGGTGGTGCTGGGTGGCCGACGTCGTGCCCCGGGCCCAGATTTGGGCCCGTCGG
GCCCCAGTTGGGTCCTAGCGGGCCGGCCCCCCGGCGTGGCCTCGTTGTCTGCGGCGCGGCGAGAAGGAGGAGCGGCTCGG
ATATGGGGCGTCGGTGTCGACGGCGTGCCGGCAACAGCGCGAGGGCGGGAGCTTTACGGGCCCACGAGGGCTCGGCCGGG
CCCGTGGGCCTGGTGTGCTCCTGCTATTGCGTCCGGACGGCTACCGTCACGGACGGTGGAGGTGGGGCCCTCCCGTGTGC
CGACAGTGCTGATGCCCTAGTCCCGGCTTTGACTCTTCACCGCTCTGTCCTCACTTCGTGGTGTCGTGGTGAGACGGCGT
GGGGGGCTCATGACCGCGTTGGCGCAGGGTGGTGGTTGGTTTGGTGGCTGGATCCGGAGCGCTCGAGGTGCGGGTTGGGA
TCGGGGAAAACCCCTGTCGGTGTGGCCGACACCGGCGCGGTGGCGCTCGTGGGTGCCACCTGACCTTCCGGGAGGGCGTC
GGGGGCTACCCTTCCTCTCGCCCCGTCGTGTACCGGGGAAAACCCTTGATAGCAGCGTCGTCATCGTCGCAATCCTTTTG
GAGGTGTTGATAGGTGTCGGCGCTTCGGAGTCTTGGAGCCTAGTGGATGATCCCGGTGAGCGCAGCGATCGCGAGACTTC
TTCGTTTTTGTTGATCCGCCGTTGTCGGCATTTGTTTCTTTTGCTCTTTCTCTATCGTTTCTTTTGGCGTGACTGTGCTG
CTTCCGCCCCAGCACCTATTCCTACATGGTTCGGTTGGTTGCTTTGTATACAAAGCGGGGGAAACCCCTTCGGCAAAGAG
GAACGCAAACTATAGTTTGTATGTAAA-AAAATGCAACTTTTATTTCTTGTTGTACCCTTTGGCTCAACATAAGGTATAC
CGATATTCGATCC-----TTCATACCGGGTTTGTC--
>SNPs
SSSSSSSSSS--------------------S---------S---------------------------S-----S-----
------------------------------------SS---------------------------------S----S--S
--S-----------------S------------S----------------------S-----------------------
--------------S-----------------------------------------------------------------
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------------------------------------------------------------S-------------------
--------S----------------SS-----------------------------S--S--------S--S---S----
----S-------S----------------------------S----------S---S--SSS--SSSSSS----------
----------------S------S---------------------S----------------------------------
---------------------------------------------------S-------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------S-S--------------------------------------
---S----------S--------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---S-----
--------------S----S---------------------S---S----------------------------------
-------S--SSS-------------------------------------------------------------------
-----------------------------S----S----------------------------S-S--------------
---S-S--S--------SS-----------S-SSSSSS------------------------S----------S------
S--------------------------------S---------S------------S--------------------S--
-------S------------------------------------------------------------------------
-------------------S-----------S-S---S-----------------------S------------------
--------S--S------------------S--------------------------------------------S---S
----S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S---S--SSSSS--SSSSSSS---------------------------------------S-S--SSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------------S---------------SS-------------
---------------------------------------------------------S----------------------
--------S---S---S----------------------S-------------------S--------------------
-------S------------------------------------------------------------------------
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---------------------------S----------------------------------------------------
-SSS---SSSSS-SSSSS--------SS-------SS
>forward_2381
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-----------------------------------------GTACTTATCCACGTCAGCGC-------------------
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>reverse_3408
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-----------------------------------------------CCGAGCTGTTGGATCCACAA-------------
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>forward_3393
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-------------GCGAGTGAGGTCCAACTGAA-----------------------------------------------
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>reverse_5000
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---------------------------------------TACTGTGATGTTCGAGCTGCT--------------------
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-------------------------------------
