Multiple sequence alignment - TraesCS3D01G319700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G319700 chr3D 100.000 5142 0 0 1 5142 433324767 433319626 0.000000e+00 9496.0
1 TraesCS3D01G319700 chr3D 85.646 209 25 4 507 713 111903099 111902894 1.120000e-51 215.0
2 TraesCS3D01G319700 chr3D 88.462 78 6 3 2549 2624 608466386 608466462 1.970000e-14 91.6
3 TraesCS3D01G319700 chr3D 91.304 46 1 2 2614 2657 5563128 5563172 5.560000e-05 60.2
4 TraesCS3D01G319700 chr3D 96.774 31 1 0 2588 2618 433322211 433322181 9.000000e-03 52.8
5 TraesCS3D01G319700 chr3A 94.676 2348 69 25 2649 4972 571499908 571497593 0.000000e+00 3592.0
6 TraesCS3D01G319700 chr3A 92.576 889 61 4 1599 2484 571500840 571499954 0.000000e+00 1271.0
7 TraesCS3D01G319700 chr3A 90.897 780 44 13 807 1582 571501663 571500907 0.000000e+00 1022.0
8 TraesCS3D01G319700 chr3A 83.740 246 30 7 4901 5138 706867807 706868050 1.860000e-54 224.0
9 TraesCS3D01G319700 chr3A 100.000 28 0 0 2588 2615 36879915 36879942 9.000000e-03 52.8
10 TraesCS3D01G319700 chr3B 94.325 1762 58 21 2649 4392 565732884 565731147 0.000000e+00 2662.0
11 TraesCS3D01G319700 chr3B 90.432 1620 113 20 1 1596 565735469 565733868 0.000000e+00 2095.0
12 TraesCS3D01G319700 chr3B 91.589 963 74 6 1590 2550 565733840 565732883 0.000000e+00 1323.0
13 TraesCS3D01G319700 chr3B 82.809 477 44 15 4202 4643 484074534 484075007 4.830000e-105 392.0
14 TraesCS3D01G319700 chr3B 87.549 257 24 3 4221 4471 784607832 784607578 1.810000e-74 291.0
15 TraesCS3D01G319700 chr3B 90.404 198 15 3 4688 4884 565730440 565730246 1.840000e-64 257.0
16 TraesCS3D01G319700 chr3B 96.226 106 3 1 4692 4797 484075111 484075215 6.850000e-39 172.0
17 TraesCS3D01G319700 chr3B 95.960 99 3 1 4692 4790 784607482 784607385 5.330000e-35 159.0
18 TraesCS3D01G319700 chr3B 79.851 134 11 13 2528 2657 729387474 729387595 3.300000e-12 84.2
19 TraesCS3D01G319700 chr4B 87.786 262 23 3 4216 4471 443192908 443192650 1.080000e-76 298.0
20 TraesCS3D01G319700 chr4B 86.594 276 28 3 4202 4471 394813198 394813470 3.890000e-76 296.0
21 TraesCS3D01G319700 chr4B 87.549 257 23 3 4221 4471 94044681 94044428 6.510000e-74 289.0
22 TraesCS3D01G319700 chr4B 87.160 257 24 3 4221 4471 549388517 549388770 3.030000e-72 283.0
23 TraesCS3D01G319700 chr4B 87.160 257 24 3 4221 4471 637162398 637162651 3.030000e-72 283.0
24 TraesCS3D01G319700 chr4B 96.907 97 2 1 4692 4788 94044332 94044237 1.480000e-35 161.0
25 TraesCS3D01G319700 chr4B 100.000 41 0 0 2548 2588 315723360 315723320 5.520000e-10 76.8
26 TraesCS3D01G319700 chr4B 92.308 39 1 2 2588 2624 315723351 315723313 3.000000e-03 54.7
27 TraesCS3D01G319700 chr2B 86.232 276 29 3 4202 4471 97327634 97327906 1.810000e-74 291.0
28 TraesCS3D01G319700 chr2B 96.907 97 2 1 4692 4788 97328002 97328097 1.480000e-35 161.0
29 TraesCS3D01G319700 chr2B 90.141 71 3 3 2591 2657 532093891 532093821 7.090000e-14 89.8
30 TraesCS3D01G319700 chr2B 100.000 41 0 0 2548 2588 39707295 39707255 5.520000e-10 76.8
31 TraesCS3D01G319700 chr2B 86.207 58 2 5 2615 2668 235070407 235070462 2.000000e-04 58.4
32 TraesCS3D01G319700 chr2B 92.308 39 1 1 2588 2624 39707286 39707248 3.000000e-03 54.7
33 TraesCS3D01G319700 chr5B 80.442 317 48 12 406 711 130400596 130400909 4.000000e-56 230.0
34 TraesCS3D01G319700 chr5B 87.192 203 24 2 510 711 482195094 482195295 4.000000e-56 230.0
35 TraesCS3D01G319700 chr5B 96.907 97 2 1 4692 4788 540795386 540795291 1.480000e-35 161.0
36 TraesCS3D01G319700 chr5B 97.674 43 1 0 2546 2588 653096629 653096587 1.990000e-09 75.0
37 TraesCS3D01G319700 chr4D 80.805 323 36 17 410 713 400892382 400892697 4.000000e-56 230.0
38 TraesCS3D01G319700 chr1D 80.303 330 40 16 406 713 235582139 235581813 5.180000e-55 226.0
39 TraesCS3D01G319700 chr1D 84.456 193 20 5 526 715 347302515 347302700 1.140000e-41 182.0
40 TraesCS3D01G319700 chr1D 92.157 51 1 2 2614 2662 83688903 83688854 9.240000e-08 69.4
41 TraesCS3D01G319700 chr1D 96.774 31 1 0 2588 2618 412079070 412079100 9.000000e-03 52.8
42 TraesCS3D01G319700 chr4A 83.740 246 30 7 4901 5138 165816541 165816298 1.860000e-54 224.0
43 TraesCS3D01G319700 chr4A 78.395 324 53 9 405 713 596828735 596829056 1.460000e-45 195.0
44 TraesCS3D01G319700 chr4A 93.750 48 3 0 2545 2592 590185820 590185773 7.140000e-09 73.1
45 TraesCS3D01G319700 chr2A 83.817 241 34 5 4901 5138 194116399 194116161 1.860000e-54 224.0
46 TraesCS3D01G319700 chr2A 83.740 246 30 7 4901 5138 606574485 606574242 1.860000e-54 224.0
47 TraesCS3D01G319700 chr7D 83.468 248 31 7 4901 5140 96378656 96378901 6.700000e-54 222.0
48 TraesCS3D01G319700 chr7D 83.534 249 29 10 4901 5140 106417930 106417685 6.700000e-54 222.0
49 TraesCS3D01G319700 chr5A 83.607 244 30 7 4903 5138 566605112 566605353 2.410000e-53 220.0
50 TraesCS3D01G319700 chr5A 87.500 104 7 4 2548 2645 688976187 688976290 1.170000e-21 115.0
51 TraesCS3D01G319700 chr1B 83.333 246 31 7 4901 5138 376614975 376615218 8.670000e-53 219.0
52 TraesCS3D01G319700 chr1B 96.907 97 2 1 4692 4788 603892654 603892749 1.480000e-35 161.0
53 TraesCS3D01G319700 chr1A 83.401 247 29 8 4901 5138 285563693 285563450 8.670000e-53 219.0
54 TraesCS3D01G319700 chr1A 82.843 204 30 3 511 710 163376935 163377137 1.470000e-40 178.0
55 TraesCS3D01G319700 chr1A 97.674 43 1 0 2546 2588 586371575 586371617 1.990000e-09 75.0
56 TraesCS3D01G319700 chr7B 95.876 97 3 1 4692 4788 722700931 722701026 6.890000e-34 156.0
57 TraesCS3D01G319700 chr5D 81.148 122 8 6 2541 2657 202429427 202429538 3.300000e-12 84.2
58 TraesCS3D01G319700 chr6D 95.745 47 2 0 2542 2588 14086166 14086212 5.520000e-10 76.8
59 TraesCS3D01G319700 chr6B 97.674 43 1 0 2546 2588 45804029 45803987 1.990000e-09 75.0
60 TraesCS3D01G319700 chrUn 91.304 46 1 2 2614 2657 287763953 287763997 5.560000e-05 60.2
61 TraesCS3D01G319700 chrUn 93.023 43 0 2 2614 2654 303898590 303898631 5.560000e-05 60.2
62 TraesCS3D01G319700 chr7A 96.774 31 1 0 2588 2618 501160858 501160888 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G319700 chr3D 433319626 433324767 5141 True 4774.400000 9496 98.387000 1 5142 2 chr3D.!!$R2 5141
1 TraesCS3D01G319700 chr3A 571497593 571501663 4070 True 1961.666667 3592 92.716333 807 4972 3 chr3A.!!$R1 4165
2 TraesCS3D01G319700 chr3B 565730246 565735469 5223 True 1584.250000 2662 91.687500 1 4884 4 chr3B.!!$R1 4883
3 TraesCS3D01G319700 chr3B 484074534 484075215 681 False 282.000000 392 89.517500 4202 4797 2 chr3B.!!$F2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 865 0.034059 AAGGAGCGTGAACCACAGAG 59.966 55.000 0.00 0.00 33.40 3.35 F
1219 1246 2.041922 CCTCCTCGTCCCCATGGA 60.042 66.667 15.22 0.00 38.75 3.41 F
1502 1530 2.276201 TGTCGAACCGGATGCATTAAG 58.724 47.619 9.46 0.00 0.00 1.85 F
1988 2071 2.298729 GGTTGCCAGGCTACAAATTGAA 59.701 45.455 25.00 0.00 36.13 2.69 F
2561 2645 0.470341 GCCACATACTCCCTCCTTCC 59.530 60.000 0.00 0.00 0.00 3.46 F
3458 3545 0.988678 AGCCTGGGATGGAAGGTACC 60.989 60.000 2.73 2.73 35.86 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2045 0.835971 TGTAGCCTGGCAACCTCTCA 60.836 55.000 22.65 5.96 0.00 3.27 R
2108 2191 1.080298 GCTGCCTGGTCAAACATGC 60.080 57.895 0.00 0.00 33.37 4.06 R
2324 2408 1.171308 CAAACAGGAGGATGGTGCAG 58.829 55.000 0.00 0.00 0.00 4.41 R
3790 3882 1.341976 ACACCAGGGCAGACAAAAAGT 60.342 47.619 0.00 0.00 0.00 2.66 R
4019 4134 0.525242 GCACGAAACACTGCAAGCAA 60.525 50.000 0.00 0.00 37.60 3.91 R
4891 5496 1.534163 GAAACGAAGGGAAACGAAGGG 59.466 52.381 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.251354 ACATGGTAGAGCAGTGGCAG 59.749 55.000 0.00 0.00 44.61 4.85
56 57 2.551459 GCAGATAATGGGTGCAGATCAC 59.449 50.000 0.00 0.00 44.90 3.06
76 77 1.463553 CCCACAGTCCAAACAAGGCC 61.464 60.000 0.00 0.00 0.00 5.19
81 82 2.597217 TCCAAACAAGGCCAGCGG 60.597 61.111 5.01 0.00 0.00 5.52
96 97 2.355009 CGGCACACAAGGCTTTGC 60.355 61.111 12.81 12.81 37.85 3.68
112 113 4.059136 GCTGTAGCACGAGACGTC 57.941 61.111 7.70 7.70 38.32 4.34
121 122 3.767278 AGCACGAGACGTCTTTAATACC 58.233 45.455 21.08 3.68 38.32 2.73
137 138 9.664777 TCTTTAATACCAATCCCTACTAGCTTA 57.335 33.333 0.00 0.00 0.00 3.09
159 160 7.308169 GCTTATTTTGCTTGCAAATCCTTTTCT 60.308 33.333 19.46 3.18 0.00 2.52
212 213 7.385205 GCGTCCTCATTAGCATTATAGAGAAAA 59.615 37.037 0.00 0.00 0.00 2.29
302 303 6.862090 GTGTTGTAGTAGAGGTTAGTGTTGAG 59.138 42.308 0.00 0.00 0.00 3.02
319 320 8.409358 AGTGTTGAGTTATTCAAAATTAGGCT 57.591 30.769 0.00 0.00 46.85 4.58
341 342 7.071824 AGGCTCCTAGAATTGTATAAGAGCTTT 59.928 37.037 19.74 11.53 43.82 3.51
352 353 6.721318 TGTATAAGAGCTTTCATTTCCACCT 58.279 36.000 0.00 0.00 0.00 4.00
408 409 2.288213 TGCATTTCAACTCGTCTCGTCT 60.288 45.455 0.00 0.00 0.00 4.18
409 410 2.091277 GCATTTCAACTCGTCTCGTCTG 59.909 50.000 0.00 0.00 0.00 3.51
424 425 2.425562 TCTGCCACGTCAGACTGAA 58.574 52.632 6.76 0.00 38.11 3.02
427 428 0.969149 TGCCACGTCAGACTGAAGAT 59.031 50.000 22.90 6.54 30.40 2.40
428 429 1.337167 TGCCACGTCAGACTGAAGATG 60.337 52.381 22.90 16.17 30.40 2.90
429 430 2.001812 CCACGTCAGACTGAAGATGG 57.998 55.000 22.90 20.08 30.40 3.51
436 437 0.978146 AGACTGAAGATGGGGTCCCG 60.978 60.000 0.48 0.00 39.42 5.14
438 439 2.609299 TGAAGATGGGGTCCCGCA 60.609 61.111 5.47 5.47 42.90 5.69
456 457 2.036571 ACGAAATCGCCCGAAACCC 61.037 57.895 2.15 0.00 44.43 4.11
484 485 3.382832 CGGACGCCTCCTCTGGTT 61.383 66.667 0.07 0.00 33.79 3.67
498 499 2.193786 GGTTGGGGGTGTGAACGT 59.806 61.111 0.00 0.00 0.00 3.99
505 506 3.698463 GGTGTGAACGTCGCGTGG 61.698 66.667 5.77 1.13 39.99 4.94
534 551 0.450184 CAACCCGGCCATTTAAGTCG 59.550 55.000 2.24 0.00 0.00 4.18
536 553 2.478033 CCCGGCCATTTAAGTCGGC 61.478 63.158 2.24 2.49 45.47 5.54
553 571 2.995574 CCGACGTCCCTCAACCCT 60.996 66.667 10.58 0.00 0.00 4.34
611 629 0.398381 GAGCCCATCCACCTCTCTCT 60.398 60.000 0.00 0.00 0.00 3.10
621 639 1.450491 CCTCTCTCTCGCTCCGTCA 60.450 63.158 0.00 0.00 0.00 4.35
637 655 2.266055 CACTCTTCCCACGCCCTC 59.734 66.667 0.00 0.00 0.00 4.30
656 674 2.452813 CGGCTTCGTCATGGTTCGG 61.453 63.158 0.00 0.00 0.00 4.30
660 678 0.443869 CTTCGTCATGGTTCGGCAAG 59.556 55.000 0.00 0.00 0.00 4.01
676 694 2.544267 GGCAAGAGATAACCACGTATGC 59.456 50.000 0.00 0.00 0.00 3.14
681 699 5.392767 AGAGATAACCACGTATGCTATGG 57.607 43.478 0.00 0.25 39.57 2.74
683 701 5.047943 AGAGATAACCACGTATGCTATGGTC 60.048 44.000 7.00 0.00 46.18 4.02
713 731 0.881118 GCCGGTTTCAGATTGAGCAA 59.119 50.000 1.90 0.00 0.00 3.91
719 737 1.442769 TTCAGATTGAGCAAGCGGAC 58.557 50.000 1.01 0.00 31.25 4.79
741 759 2.051345 CCAAAAGCGTGCGTGACC 60.051 61.111 0.00 0.00 0.00 4.02
748 766 1.154413 GCGTGCGTGACCATTTGAG 60.154 57.895 0.00 0.00 0.00 3.02
755 773 1.668419 GTGACCATTTGAGGGATCGG 58.332 55.000 0.00 0.00 0.00 4.18
761 779 2.035066 CCATTTGAGGGATCGGATTTGC 59.965 50.000 0.00 0.00 0.00 3.68
765 783 1.134401 TGAGGGATCGGATTTGCTGTC 60.134 52.381 0.00 0.00 0.00 3.51
773 791 3.386867 GATTTGCTGTCCGCGGCTG 62.387 63.158 23.51 19.76 46.77 4.85
786 804 0.105039 GCGGCTGTAGGTGCTCTTAT 59.895 55.000 0.00 0.00 0.00 1.73
787 805 1.858091 CGGCTGTAGGTGCTCTTATG 58.142 55.000 0.00 0.00 0.00 1.90
789 807 2.036475 CGGCTGTAGGTGCTCTTATGAT 59.964 50.000 0.00 0.00 0.00 2.45
808 826 1.263356 TGGTACAACTCCTTCGAGGG 58.737 55.000 7.38 7.38 40.77 4.30
810 828 0.108281 GTACAACTCCTTCGAGGGCC 60.108 60.000 9.09 0.00 40.77 5.80
811 829 1.601419 TACAACTCCTTCGAGGGCCG 61.601 60.000 9.09 4.95 40.77 6.13
812 830 3.391382 AACTCCTTCGAGGGCCGG 61.391 66.667 9.09 0.00 40.77 6.13
813 831 3.899545 AACTCCTTCGAGGGCCGGA 62.900 63.158 5.05 0.00 40.77 5.14
815 833 4.056584 TCCTTCGAGGGCCGGAGA 62.057 66.667 5.05 0.00 46.85 3.71
831 849 1.546476 GGAGAAGAAGAAGGAGCGTGA 59.454 52.381 0.00 0.00 0.00 4.35
840 865 0.034059 AAGGAGCGTGAACCACAGAG 59.966 55.000 0.00 0.00 33.40 3.35
984 1011 4.506255 CCGACCCCCTCCAATGCC 62.506 72.222 0.00 0.00 0.00 4.40
1219 1246 2.041922 CCTCCTCGTCCCCATGGA 60.042 66.667 15.22 0.00 38.75 3.41
1469 1497 4.536090 TGGATGGTGAGTTCTTACCTTCAT 59.464 41.667 21.68 7.85 40.81 2.57
1502 1530 2.276201 TGTCGAACCGGATGCATTAAG 58.724 47.619 9.46 0.00 0.00 1.85
1602 1681 3.757270 ACCCACCGTGTTAATTGAATCA 58.243 40.909 0.00 0.00 0.00 2.57
1668 1749 7.334421 TGCTCTGTTATTTTTCATAGGTGACTC 59.666 37.037 0.00 0.00 43.67 3.36
1669 1750 7.201652 GCTCTGTTATTTTTCATAGGTGACTCC 60.202 40.741 0.00 0.00 43.67 3.85
1670 1751 7.110155 TCTGTTATTTTTCATAGGTGACTCCC 58.890 38.462 0.00 0.00 43.67 4.30
1822 1905 9.052759 TGTTAGCCTTAAAGGAATCGAATATTC 57.947 33.333 5.30 5.30 37.67 1.75
1850 1933 8.800370 TGTTATGTATTGTTGAGGCTTTATGA 57.200 30.769 0.00 0.00 0.00 2.15
1859 1942 8.579850 TTGTTGAGGCTTTATGAATGTCTTAT 57.420 30.769 0.00 0.00 0.00 1.73
1893 1976 5.798125 TTTCAGGTTTTACATTGGCATGA 57.202 34.783 0.00 0.00 34.11 3.07
1898 1981 4.218417 AGGTTTTACATTGGCATGACTGAC 59.782 41.667 0.00 0.00 34.11 3.51
1911 1994 5.464168 GCATGACTGACTTGCTTTTGTATT 58.536 37.500 0.00 0.00 43.40 1.89
1954 2037 8.342634 CGAGAACCCGAAATATTTACATTTCAT 58.657 33.333 0.00 0.00 42.54 2.57
1955 2038 9.450807 GAGAACCCGAAATATTTACATTTCATG 57.549 33.333 0.00 0.00 42.54 3.07
1969 2052 4.776837 ACATTTCATGAGAGAGTGAGAGGT 59.223 41.667 0.00 0.00 0.00 3.85
1988 2071 2.298729 GGTTGCCAGGCTACAAATTGAA 59.701 45.455 25.00 0.00 36.13 2.69
2028 2111 5.387444 CGATGTCTGAACTTGTTAGTTGTCG 60.387 44.000 0.00 0.00 44.51 4.35
2097 2180 6.828273 TGAACCTTTCTTCATGTTCTCTTTGA 59.172 34.615 0.00 0.00 38.29 2.69
2324 2408 6.543831 AGGCTTATCATTCCATACTTCAACAC 59.456 38.462 0.00 0.00 0.00 3.32
2342 2426 0.773644 ACTGCACCATCCTCCTGTTT 59.226 50.000 0.00 0.00 0.00 2.83
2358 2442 6.347321 CCTCCTGTTTGTTTTTGTGTTGTTTC 60.347 38.462 0.00 0.00 0.00 2.78
2385 2469 6.126863 TCATTACAGGAGGTCTGAAATTGT 57.873 37.500 0.00 0.00 46.18 2.71
2396 2480 6.068010 AGGTCTGAAATTGTGGTTAATGTCA 58.932 36.000 0.00 0.00 34.13 3.58
2437 2521 9.690434 GATGTTCTAACAGTGATTTCGAATTAC 57.310 33.333 0.00 0.00 43.04 1.89
2463 2547 2.816672 TCTCTAGGTATCAGAGCATGCG 59.183 50.000 13.01 0.00 39.55 4.73
2548 2632 5.999205 TTGGATATTTTGTCTTGCCACAT 57.001 34.783 0.00 0.00 0.00 3.21
2549 2633 7.473735 TTTGGATATTTTGTCTTGCCACATA 57.526 32.000 0.00 0.00 0.00 2.29
2550 2634 6.449635 TGGATATTTTGTCTTGCCACATAC 57.550 37.500 0.00 0.00 0.00 2.39
2551 2635 6.186957 TGGATATTTTGTCTTGCCACATACT 58.813 36.000 0.00 0.00 0.00 2.12
2552 2636 6.318648 TGGATATTTTGTCTTGCCACATACTC 59.681 38.462 0.00 0.00 0.00 2.59
2553 2637 6.238759 GGATATTTTGTCTTGCCACATACTCC 60.239 42.308 0.00 0.00 0.00 3.85
2554 2638 2.489938 TTGTCTTGCCACATACTCCC 57.510 50.000 0.00 0.00 0.00 4.30
2555 2639 1.656587 TGTCTTGCCACATACTCCCT 58.343 50.000 0.00 0.00 0.00 4.20
2556 2640 1.555075 TGTCTTGCCACATACTCCCTC 59.445 52.381 0.00 0.00 0.00 4.30
2557 2641 1.134371 GTCTTGCCACATACTCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
2558 2642 1.207791 CTTGCCACATACTCCCTCCT 58.792 55.000 0.00 0.00 0.00 3.69
2559 2643 1.561542 CTTGCCACATACTCCCTCCTT 59.438 52.381 0.00 0.00 0.00 3.36
2560 2644 1.204146 TGCCACATACTCCCTCCTTC 58.796 55.000 0.00 0.00 0.00 3.46
2561 2645 0.470341 GCCACATACTCCCTCCTTCC 59.530 60.000 0.00 0.00 0.00 3.46
2562 2646 1.132500 CCACATACTCCCTCCTTCCC 58.868 60.000 0.00 0.00 0.00 3.97
2563 2647 1.625228 CCACATACTCCCTCCTTCCCA 60.625 57.143 0.00 0.00 0.00 4.37
2564 2648 2.196595 CACATACTCCCTCCTTCCCAA 58.803 52.381 0.00 0.00 0.00 4.12
2565 2649 2.576191 CACATACTCCCTCCTTCCCAAA 59.424 50.000 0.00 0.00 0.00 3.28
2566 2650 3.010138 CACATACTCCCTCCTTCCCAAAA 59.990 47.826 0.00 0.00 0.00 2.44
2567 2651 3.858638 ACATACTCCCTCCTTCCCAAAAT 59.141 43.478 0.00 0.00 0.00 1.82
2568 2652 5.043762 ACATACTCCCTCCTTCCCAAAATA 58.956 41.667 0.00 0.00 0.00 1.40
2569 2653 5.494706 ACATACTCCCTCCTTCCCAAAATAA 59.505 40.000 0.00 0.00 0.00 1.40
2570 2654 4.592997 ACTCCCTCCTTCCCAAAATAAG 57.407 45.455 0.00 0.00 0.00 1.73
2571 2655 3.923425 ACTCCCTCCTTCCCAAAATAAGT 59.077 43.478 0.00 0.00 0.00 2.24
2572 2656 4.263949 ACTCCCTCCTTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2573 2657 3.660669 TCCCTCCTTCCCAAAATAAGTGT 59.339 43.478 0.00 0.00 0.00 3.55
2574 2658 4.017126 CCCTCCTTCCCAAAATAAGTGTC 58.983 47.826 0.00 0.00 0.00 3.67
2575 2659 4.263949 CCCTCCTTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
2576 2660 4.944317 CCTCCTTCCCAAAATAAGTGTCTC 59.056 45.833 0.00 0.00 0.00 3.36
2577 2661 5.514834 CCTCCTTCCCAAAATAAGTGTCTCA 60.515 44.000 0.00 0.00 0.00 3.27
2578 2662 5.947663 TCCTTCCCAAAATAAGTGTCTCAA 58.052 37.500 0.00 0.00 0.00 3.02
2579 2663 5.768164 TCCTTCCCAAAATAAGTGTCTCAAC 59.232 40.000 0.00 0.00 0.00 3.18
2580 2664 5.770162 CCTTCCCAAAATAAGTGTCTCAACT 59.230 40.000 0.00 0.00 0.00 3.16
2581 2665 6.265422 CCTTCCCAAAATAAGTGTCTCAACTT 59.735 38.462 0.00 0.00 42.89 2.66
2582 2666 7.201911 CCTTCCCAAAATAAGTGTCTCAACTTT 60.202 37.037 0.00 0.00 40.77 2.66
2583 2667 8.754991 TTCCCAAAATAAGTGTCTCAACTTTA 57.245 30.769 0.00 0.00 40.77 1.85
2584 2668 8.391075 TCCCAAAATAAGTGTCTCAACTTTAG 57.609 34.615 0.00 0.00 40.77 1.85
2585 2669 7.996644 TCCCAAAATAAGTGTCTCAACTTTAGT 59.003 33.333 0.00 0.00 40.77 2.24
2586 2670 9.280174 CCCAAAATAAGTGTCTCAACTTTAGTA 57.720 33.333 0.00 0.00 40.77 1.82
2591 2675 9.708092 AATAAGTGTCTCAACTTTAGTACCTTC 57.292 33.333 0.00 0.00 40.77 3.46
2592 2676 6.099159 AGTGTCTCAACTTTAGTACCTTCC 57.901 41.667 0.00 0.00 0.00 3.46
2593 2677 5.011840 AGTGTCTCAACTTTAGTACCTTCCC 59.988 44.000 0.00 0.00 0.00 3.97
2594 2678 4.903049 TGTCTCAACTTTAGTACCTTCCCA 59.097 41.667 0.00 0.00 0.00 4.37
2595 2679 5.367352 TGTCTCAACTTTAGTACCTTCCCAA 59.633 40.000 0.00 0.00 0.00 4.12
2596 2680 6.126710 TGTCTCAACTTTAGTACCTTCCCAAA 60.127 38.462 0.00 0.00 0.00 3.28
2597 2681 6.769341 GTCTCAACTTTAGTACCTTCCCAAAA 59.231 38.462 0.00 0.00 0.00 2.44
2598 2682 7.447545 GTCTCAACTTTAGTACCTTCCCAAAAT 59.552 37.037 0.00 0.00 0.00 1.82
2599 2683 8.662255 TCTCAACTTTAGTACCTTCCCAAAATA 58.338 33.333 0.00 0.00 0.00 1.40
2600 2684 9.292195 CTCAACTTTAGTACCTTCCCAAAATAA 57.708 33.333 0.00 0.00 0.00 1.40
2601 2685 9.292195 TCAACTTTAGTACCTTCCCAAAATAAG 57.708 33.333 0.00 0.00 0.00 1.73
2602 2686 9.074576 CAACTTTAGTACCTTCCCAAAATAAGT 57.925 33.333 0.00 0.00 0.00 2.24
2603 2687 8.631480 ACTTTAGTACCTTCCCAAAATAAGTG 57.369 34.615 0.00 0.00 0.00 3.16
2604 2688 8.222637 ACTTTAGTACCTTCCCAAAATAAGTGT 58.777 33.333 0.00 0.00 0.00 3.55
2605 2689 8.625786 TTTAGTACCTTCCCAAAATAAGTGTC 57.374 34.615 0.00 0.00 0.00 3.67
2606 2690 6.449830 AGTACCTTCCCAAAATAAGTGTCT 57.550 37.500 0.00 0.00 0.00 3.41
2607 2691 6.473758 AGTACCTTCCCAAAATAAGTGTCTC 58.526 40.000 0.00 0.00 0.00 3.36
2608 2692 5.319043 ACCTTCCCAAAATAAGTGTCTCA 57.681 39.130 0.00 0.00 0.00 3.27
2609 2693 5.701224 ACCTTCCCAAAATAAGTGTCTCAA 58.299 37.500 0.00 0.00 0.00 3.02
2610 2694 5.535030 ACCTTCCCAAAATAAGTGTCTCAAC 59.465 40.000 0.00 0.00 0.00 3.18
2611 2695 5.770162 CCTTCCCAAAATAAGTGTCTCAACT 59.230 40.000 0.00 0.00 0.00 3.16
2612 2696 6.265422 CCTTCCCAAAATAAGTGTCTCAACTT 59.735 38.462 0.00 0.00 42.89 2.66
2613 2697 7.201911 CCTTCCCAAAATAAGTGTCTCAACTTT 60.202 37.037 0.00 0.00 40.77 2.66
2614 2698 8.754991 TTCCCAAAATAAGTGTCTCAACTTTA 57.245 30.769 0.00 0.00 40.77 1.85
2615 2699 8.161699 TCCCAAAATAAGTGTCTCAACTTTAC 57.838 34.615 0.00 0.00 40.77 2.01
2616 2700 7.996644 TCCCAAAATAAGTGTCTCAACTTTACT 59.003 33.333 0.00 0.00 40.77 2.24
2617 2701 9.280174 CCCAAAATAAGTGTCTCAACTTTACTA 57.720 33.333 0.00 0.00 40.77 1.82
2640 2724 9.014297 ACTAAAGTTGAGACTTATTTTGGGATG 57.986 33.333 0.00 0.00 45.18 3.51
2641 2725 6.840780 AAGTTGAGACTTATTTTGGGATGG 57.159 37.500 0.00 0.00 44.13 3.51
2642 2726 6.139679 AGTTGAGACTTATTTTGGGATGGA 57.860 37.500 0.00 0.00 29.87 3.41
2643 2727 6.183347 AGTTGAGACTTATTTTGGGATGGAG 58.817 40.000 0.00 0.00 29.87 3.86
2644 2728 5.116084 TGAGACTTATTTTGGGATGGAGG 57.884 43.478 0.00 0.00 0.00 4.30
2645 2729 4.079787 TGAGACTTATTTTGGGATGGAGGG 60.080 45.833 0.00 0.00 0.00 4.30
2646 2730 4.119155 AGACTTATTTTGGGATGGAGGGA 58.881 43.478 0.00 0.00 0.00 4.20
2647 2731 4.166919 AGACTTATTTTGGGATGGAGGGAG 59.833 45.833 0.00 0.00 0.00 4.30
2679 2763 9.905713 TTTTAGACATATAGGGCCATGATTATC 57.094 33.333 6.18 0.00 0.00 1.75
2713 2797 7.730084 TCTTATCTATGGTTCTGGTTCTGATG 58.270 38.462 0.00 0.00 0.00 3.07
2924 3009 4.643784 AGAAAGATGGGCATCAATTCTGTC 59.356 41.667 3.83 0.00 40.99 3.51
3039 3126 3.861840 TGTTAAGCTGACCTGCAGTATC 58.138 45.455 13.81 10.51 46.62 2.24
3171 3258 1.076192 ACAGCTTGCTTGCATCCCT 59.924 52.632 0.00 0.00 34.99 4.20
3249 3336 4.225942 ACCATTCACCAGCTTCATCTAAGA 59.774 41.667 0.00 0.00 37.38 2.10
3312 3399 4.079787 TGTCCTGCTATTCTTGCCCTTAAT 60.080 41.667 0.00 0.00 0.00 1.40
3313 3400 4.517075 GTCCTGCTATTCTTGCCCTTAATC 59.483 45.833 0.00 0.00 0.00 1.75
3458 3545 0.988678 AGCCTGGGATGGAAGGTACC 60.989 60.000 2.73 2.73 35.86 3.34
3520 3612 6.581388 TGAATTCTCACCCTGATTATCCTT 57.419 37.500 7.05 0.00 0.00 3.36
3647 3739 2.584835 TTGATCCTGTGGACCTTTGG 57.415 50.000 0.00 0.00 32.98 3.28
3916 4019 5.188555 ACTCAGAAGCATCTCCTATGTGAAA 59.811 40.000 0.00 0.00 32.03 2.69
3919 4022 7.114754 TCAGAAGCATCTCCTATGTGAAATTT 58.885 34.615 0.00 0.00 32.03 1.82
3920 4023 7.066645 TCAGAAGCATCTCCTATGTGAAATTTG 59.933 37.037 0.00 0.00 32.03 2.32
3921 4024 7.066645 CAGAAGCATCTCCTATGTGAAATTTGA 59.933 37.037 0.00 0.00 32.03 2.69
3922 4025 7.778853 AGAAGCATCTCCTATGTGAAATTTGAT 59.221 33.333 0.00 0.00 0.00 2.57
3924 4027 8.985315 AGCATCTCCTATGTGAAATTTGATAA 57.015 30.769 0.00 0.00 0.00 1.75
3925 4028 9.584008 AGCATCTCCTATGTGAAATTTGATAAT 57.416 29.630 0.00 0.00 0.00 1.28
4035 4150 5.630680 AGATTATTTTGCTTGCAGTGTTTCG 59.369 36.000 0.00 0.00 0.00 3.46
4274 4391 1.338020 GGAAGGGTTGTGCAGTTTCTG 59.662 52.381 0.00 0.00 34.12 3.02
4340 4462 6.550108 CCAAGTAGCCATTAGTCTAGTTCCTA 59.450 42.308 0.00 0.00 0.00 2.94
4344 4466 7.785506 AGTAGCCATTAGTCTAGTTCCTAACAT 59.214 37.037 0.00 0.00 0.00 2.71
4354 4477 6.014156 GTCTAGTTCCTAACATATGGAGCCAT 60.014 42.308 7.80 7.25 40.19 4.40
4471 4672 6.983307 ACATATTCTTGCAGCTCTGTACTAAG 59.017 38.462 0.00 0.00 0.00 2.18
4600 4833 6.017026 TGCAAACGGTGAAATGTATAAACTCA 60.017 34.615 0.00 0.00 0.00 3.41
4601 4834 7.027161 GCAAACGGTGAAATGTATAAACTCAT 58.973 34.615 0.00 0.00 0.00 2.90
4635 5180 3.369681 CCCTGTATTGTACTTGCGGGTTA 60.370 47.826 10.03 0.00 0.00 2.85
4640 5185 6.613233 TGTATTGTACTTGCGGGTTAAAATG 58.387 36.000 0.00 0.00 0.00 2.32
4641 5186 5.715434 ATTGTACTTGCGGGTTAAAATGT 57.285 34.783 0.00 0.00 0.00 2.71
4891 5496 2.429610 TCGGAGTTGCTATGGGTTACTC 59.570 50.000 0.00 0.00 35.61 2.59
4903 5508 2.105006 GGTTACTCCCTTCGTTTCCC 57.895 55.000 0.00 0.00 0.00 3.97
4904 5509 1.627329 GGTTACTCCCTTCGTTTCCCT 59.373 52.381 0.00 0.00 0.00 4.20
4905 5510 2.039480 GGTTACTCCCTTCGTTTCCCTT 59.961 50.000 0.00 0.00 0.00 3.95
4917 5522 4.378774 TCGTTTCCCTTCGTTTCACAATA 58.621 39.130 0.00 0.00 0.00 1.90
4929 5534 8.655651 TTCGTTTCACAATATAGTGCATATGA 57.344 30.769 6.97 0.00 39.35 2.15
4969 5575 5.874261 ACCTCACAAACTTTGACCAAATTTG 59.126 36.000 11.40 11.40 36.30 2.32
4970 5576 5.874261 CCTCACAAACTTTGACCAAATTTGT 59.126 36.000 16.73 18.76 39.54 2.83
4971 5577 7.038659 CCTCACAAACTTTGACCAAATTTGTA 58.961 34.615 16.73 0.60 38.44 2.41
4972 5578 7.222611 CCTCACAAACTTTGACCAAATTTGTAG 59.777 37.037 16.73 18.74 38.44 2.74
4973 5579 7.831753 TCACAAACTTTGACCAAATTTGTAGA 58.168 30.769 16.73 18.80 38.44 2.59
4974 5580 7.973388 TCACAAACTTTGACCAAATTTGTAGAG 59.027 33.333 16.73 9.55 38.44 2.43
4975 5581 7.973388 CACAAACTTTGACCAAATTTGTAGAGA 59.027 33.333 16.73 0.00 38.44 3.10
4976 5582 8.527810 ACAAACTTTGACCAAATTTGTAGAGAA 58.472 29.630 16.73 4.69 38.56 2.87
4977 5583 9.364989 CAAACTTTGACCAAATTTGTAGAGAAA 57.635 29.630 16.73 7.43 31.72 2.52
4978 5584 9.936759 AAACTTTGACCAAATTTGTAGAGAAAA 57.063 25.926 16.73 7.65 0.00 2.29
4979 5585 9.936759 AACTTTGACCAAATTTGTAGAGAAAAA 57.063 25.926 16.73 6.78 0.00 1.94
4980 5586 9.366216 ACTTTGACCAAATTTGTAGAGAAAAAC 57.634 29.630 16.73 0.00 0.00 2.43
4981 5587 9.364989 CTTTGACCAAATTTGTAGAGAAAAACA 57.635 29.630 16.73 0.32 0.00 2.83
4982 5588 9.883142 TTTGACCAAATTTGTAGAGAAAAACAT 57.117 25.926 16.73 0.00 0.00 2.71
4983 5589 9.528018 TTGACCAAATTTGTAGAGAAAAACATC 57.472 29.630 16.73 0.00 0.00 3.06
4984 5590 8.912988 TGACCAAATTTGTAGAGAAAAACATCT 58.087 29.630 16.73 0.00 0.00 2.90
4987 5593 9.846248 CCAAATTTGTAGAGAAAAACATCTAGG 57.154 33.333 16.73 0.00 0.00 3.02
4991 5597 7.435068 TTGTAGAGAAAAACATCTAGGTTGC 57.565 36.000 0.00 0.00 0.00 4.17
4992 5598 5.938125 TGTAGAGAAAAACATCTAGGTTGCC 59.062 40.000 0.00 0.00 0.00 4.52
4993 5599 4.985538 AGAGAAAAACATCTAGGTTGCCA 58.014 39.130 0.00 0.00 0.00 4.92
4994 5600 5.385198 AGAGAAAAACATCTAGGTTGCCAA 58.615 37.500 0.00 0.00 0.00 4.52
4995 5601 5.833131 AGAGAAAAACATCTAGGTTGCCAAA 59.167 36.000 0.00 0.00 0.00 3.28
4996 5602 6.323739 AGAGAAAAACATCTAGGTTGCCAAAA 59.676 34.615 0.00 0.00 0.00 2.44
4997 5603 7.015584 AGAGAAAAACATCTAGGTTGCCAAAAT 59.984 33.333 0.00 0.00 0.00 1.82
4998 5604 8.189119 AGAAAAACATCTAGGTTGCCAAAATA 57.811 30.769 0.00 0.00 0.00 1.40
4999 5605 8.088365 AGAAAAACATCTAGGTTGCCAAAATAC 58.912 33.333 0.00 0.00 0.00 1.89
5000 5606 6.909550 AAACATCTAGGTTGCCAAAATACA 57.090 33.333 0.00 0.00 0.00 2.29
5001 5607 7.480760 AAACATCTAGGTTGCCAAAATACAT 57.519 32.000 0.00 0.00 0.00 2.29
5002 5608 6.699575 ACATCTAGGTTGCCAAAATACATC 57.300 37.500 0.00 0.00 0.00 3.06
5003 5609 6.426587 ACATCTAGGTTGCCAAAATACATCT 58.573 36.000 0.00 0.00 0.00 2.90
5004 5610 6.543831 ACATCTAGGTTGCCAAAATACATCTC 59.456 38.462 0.00 0.00 0.00 2.75
5005 5611 6.061022 TCTAGGTTGCCAAAATACATCTCA 57.939 37.500 0.00 0.00 0.00 3.27
5006 5612 6.662755 TCTAGGTTGCCAAAATACATCTCAT 58.337 36.000 0.00 0.00 0.00 2.90
5007 5613 7.118723 TCTAGGTTGCCAAAATACATCTCATT 58.881 34.615 0.00 0.00 0.00 2.57
5008 5614 8.271458 TCTAGGTTGCCAAAATACATCTCATTA 58.729 33.333 0.00 0.00 0.00 1.90
5009 5615 7.338800 AGGTTGCCAAAATACATCTCATTAG 57.661 36.000 0.00 0.00 0.00 1.73
5010 5616 7.118723 AGGTTGCCAAAATACATCTCATTAGA 58.881 34.615 0.00 0.00 35.80 2.10
5011 5617 7.781693 AGGTTGCCAAAATACATCTCATTAGAT 59.218 33.333 0.00 0.00 43.54 1.98
5012 5618 8.416329 GGTTGCCAAAATACATCTCATTAGATT 58.584 33.333 0.00 0.00 40.65 2.40
5013 5619 9.455847 GTTGCCAAAATACATCTCATTAGATTC 57.544 33.333 0.00 0.00 40.65 2.52
5014 5620 8.750515 TGCCAAAATACATCTCATTAGATTCA 57.249 30.769 0.00 0.00 40.65 2.57
5015 5621 9.187996 TGCCAAAATACATCTCATTAGATTCAA 57.812 29.630 0.00 0.00 40.65 2.69
5016 5622 9.455847 GCCAAAATACATCTCATTAGATTCAAC 57.544 33.333 0.00 0.00 40.65 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.365025 ACTGCTCTACCATGTGATTAGATGT 59.635 40.000 0.00 0.00 0.00 3.06
56 57 1.463553 GCCTTGTTTGGACTGTGGGG 61.464 60.000 0.00 0.00 0.00 4.96
61 62 1.662044 GCTGGCCTTGTTTGGACTG 59.338 57.895 3.32 0.00 35.73 3.51
76 77 2.848858 AAAGCCTTGTGTGCCGCTG 61.849 57.895 0.00 0.00 0.00 5.18
81 82 0.667993 TACAGCAAAGCCTTGTGTGC 59.332 50.000 11.27 0.00 34.79 4.57
96 97 2.333389 AAAGACGTCTCGTGCTACAG 57.667 50.000 20.33 0.00 41.37 2.74
104 105 4.743644 GGGATTGGTATTAAAGACGTCTCG 59.256 45.833 20.33 0.00 0.00 4.04
121 122 7.420800 CAAGCAAAATAAGCTAGTAGGGATTG 58.579 38.462 0.00 0.00 42.53 2.67
212 213 6.215227 GGGAGATGGATAAAATCAGGAGAGAT 59.785 42.308 0.00 0.00 0.00 2.75
221 222 6.004574 GGTTGTAGGGGAGATGGATAAAATC 58.995 44.000 0.00 0.00 0.00 2.17
314 315 7.242359 AGCTCTTATACAATTCTAGGAGCCTA 58.758 38.462 14.63 0.00 44.01 3.93
341 342 6.976934 AGAAAGCTAAAAAGGTGGAAATGA 57.023 33.333 0.00 0.00 0.00 2.57
352 353 6.594788 ATGAGATGGCAAGAAAGCTAAAAA 57.405 33.333 0.00 0.00 34.17 1.94
408 409 0.969149 ATCTTCAGTCTGACGTGGCA 59.031 50.000 0.78 0.00 0.00 4.92
409 410 1.354040 CATCTTCAGTCTGACGTGGC 58.646 55.000 0.78 0.00 0.00 5.01
427 428 3.615509 GATTTCGTGCGGGACCCCA 62.616 63.158 4.46 0.71 35.37 4.96
428 429 2.822701 GATTTCGTGCGGGACCCC 60.823 66.667 4.46 0.00 0.00 4.95
429 430 3.192922 CGATTTCGTGCGGGACCC 61.193 66.667 0.00 0.00 34.11 4.46
436 437 1.511254 GTTTCGGGCGATTTCGTGC 60.511 57.895 1.55 0.00 42.22 5.34
438 439 2.036571 GGGTTTCGGGCGATTTCGT 61.037 57.895 1.55 0.00 42.22 3.85
468 469 2.266055 CAACCAGAGGAGGCGTCC 59.734 66.667 17.88 17.88 44.33 4.79
473 474 2.204151 ACCCCCAACCAGAGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
480 481 2.193517 CGTTCACACCCCCAACCA 59.806 61.111 0.00 0.00 0.00 3.67
484 485 4.612412 GCGACGTTCACACCCCCA 62.612 66.667 0.00 0.00 0.00 4.96
518 535 2.478033 GCCGACTTAAATGGCCGGG 61.478 63.158 2.18 0.00 43.06 5.73
524 541 0.643820 GACGTCGGCCGACTTAAATG 59.356 55.000 44.83 33.33 42.54 2.32
534 551 4.754667 GGTTGAGGGACGTCGGCC 62.755 72.222 9.26 9.26 0.00 6.13
536 553 1.664321 CTAGGGTTGAGGGACGTCGG 61.664 65.000 9.92 0.00 0.00 4.79
537 554 1.807886 CTAGGGTTGAGGGACGTCG 59.192 63.158 9.92 0.00 0.00 5.12
541 558 1.198759 TGTGGCTAGGGTTGAGGGAC 61.199 60.000 0.00 0.00 0.00 4.46
546 563 0.618458 GTGGATGTGGCTAGGGTTGA 59.382 55.000 0.00 0.00 0.00 3.18
548 565 0.550147 AGGTGGATGTGGCTAGGGTT 60.550 55.000 0.00 0.00 0.00 4.11
549 566 0.983378 GAGGTGGATGTGGCTAGGGT 60.983 60.000 0.00 0.00 0.00 4.34
553 571 1.692749 GGGGAGGTGGATGTGGCTA 60.693 63.158 0.00 0.00 0.00 3.93
595 613 1.743321 GCGAGAGAGAGGTGGATGGG 61.743 65.000 0.00 0.00 0.00 4.00
611 629 2.341101 GGGAAGAGTGACGGAGCGA 61.341 63.158 0.00 0.00 0.00 4.93
621 639 3.003763 GGAGGGCGTGGGAAGAGT 61.004 66.667 0.00 0.00 0.00 3.24
637 655 2.452813 CGAACCATGACGAAGCCGG 61.453 63.158 0.00 0.00 40.78 6.13
641 659 0.443869 CTTGCCGAACCATGACGAAG 59.556 55.000 0.00 0.00 0.00 3.79
656 674 3.458189 AGCATACGTGGTTATCTCTTGC 58.542 45.455 0.00 0.00 30.39 4.01
660 678 5.135508 ACCATAGCATACGTGGTTATCTC 57.864 43.478 0.00 0.00 43.44 2.75
676 694 1.665916 CGCTCCGGCATGACCATAG 60.666 63.158 0.00 0.00 39.03 2.23
726 744 0.383949 AAATGGTCACGCACGCTTTT 59.616 45.000 0.00 0.00 0.00 2.27
731 749 1.497278 CCTCAAATGGTCACGCACG 59.503 57.895 0.00 0.00 0.00 5.34
734 752 1.017387 GATCCCTCAAATGGTCACGC 58.983 55.000 0.00 0.00 0.00 5.34
741 759 2.954318 AGCAAATCCGATCCCTCAAATG 59.046 45.455 0.00 0.00 0.00 2.32
748 766 2.707902 GGACAGCAAATCCGATCCC 58.292 57.895 0.00 0.00 0.00 3.85
761 779 3.760035 ACCTACAGCCGCGGACAG 61.760 66.667 33.48 19.90 0.00 3.51
769 787 3.397482 CATCATAAGAGCACCTACAGCC 58.603 50.000 0.00 0.00 0.00 4.85
773 791 5.531122 TGTACCATCATAAGAGCACCTAC 57.469 43.478 0.00 0.00 0.00 3.18
777 795 4.811557 GGAGTTGTACCATCATAAGAGCAC 59.188 45.833 0.00 0.00 0.00 4.40
782 800 5.902681 TCGAAGGAGTTGTACCATCATAAG 58.097 41.667 0.00 0.00 0.00 1.73
786 804 2.496070 CCTCGAAGGAGTTGTACCATCA 59.504 50.000 0.00 0.00 37.67 3.07
787 805 2.159085 CCCTCGAAGGAGTTGTACCATC 60.159 54.545 0.00 0.00 37.67 3.51
789 807 1.263356 CCCTCGAAGGAGTTGTACCA 58.737 55.000 0.00 0.00 37.67 3.25
796 814 4.377760 TCCGGCCCTCGAAGGAGT 62.378 66.667 3.61 0.00 37.67 3.85
803 821 1.605058 TTCTTCTTCTCCGGCCCTCG 61.605 60.000 0.00 0.00 38.88 4.63
804 822 0.176910 CTTCTTCTTCTCCGGCCCTC 59.823 60.000 0.00 0.00 0.00 4.30
805 823 1.268283 CCTTCTTCTTCTCCGGCCCT 61.268 60.000 0.00 0.00 0.00 5.19
808 826 0.461163 GCTCCTTCTTCTTCTCCGGC 60.461 60.000 0.00 0.00 0.00 6.13
810 828 0.528470 ACGCTCCTTCTTCTTCTCCG 59.472 55.000 0.00 0.00 0.00 4.63
811 829 1.546476 TCACGCTCCTTCTTCTTCTCC 59.454 52.381 0.00 0.00 0.00 3.71
812 830 2.990514 GTTCACGCTCCTTCTTCTTCTC 59.009 50.000 0.00 0.00 0.00 2.87
813 831 2.289133 GGTTCACGCTCCTTCTTCTTCT 60.289 50.000 0.00 0.00 0.00 2.85
815 833 1.416401 TGGTTCACGCTCCTTCTTCTT 59.584 47.619 0.00 0.00 0.00 2.52
831 849 4.938756 TGGGGCCCCTCTGTGGTT 62.939 66.667 40.66 0.00 36.94 3.67
967 994 4.506255 GGCATTGGAGGGGGTCGG 62.506 72.222 0.00 0.00 0.00 4.79
968 995 4.506255 GGGCATTGGAGGGGGTCG 62.506 72.222 0.00 0.00 0.00 4.79
984 1011 1.375908 CATGTCCGTGGACTGTGGG 60.376 63.158 19.17 1.94 44.80 4.61
1383 1410 3.072915 TGGGCAGATTCAGAAACTTCTCA 59.927 43.478 0.00 0.00 34.74 3.27
1469 1497 2.609491 GGTTCGACAGCATAGTGACACA 60.609 50.000 8.59 0.00 0.00 3.72
1502 1530 6.404734 CCAACCATCAAACTTAAGCACCTATC 60.405 42.308 1.29 0.00 0.00 2.08
1583 1627 6.972328 CCTATTTGATTCAATTAACACGGTGG 59.028 38.462 13.48 0.00 0.00 4.61
1602 1681 4.510167 AGCCTGCACATACTTCCTATTT 57.490 40.909 0.00 0.00 0.00 1.40
1822 1905 5.991328 AGCCTCAACAATACATAACATCG 57.009 39.130 0.00 0.00 0.00 3.84
1876 1959 4.218417 AGTCAGTCATGCCAATGTAAAACC 59.782 41.667 0.00 0.00 35.15 3.27
1886 1969 1.985473 AAAGCAAGTCAGTCATGCCA 58.015 45.000 0.00 0.00 41.04 4.92
1893 1976 9.236006 AGATATGAAATACAAAAGCAAGTCAGT 57.764 29.630 0.00 0.00 0.00 3.41
1911 1994 6.407752 GGGTTCTCGGTTCCTTAAGATATGAA 60.408 42.308 3.36 0.00 0.00 2.57
1954 2037 1.261480 GGCAACCTCTCACTCTCTCA 58.739 55.000 0.00 0.00 0.00 3.27
1955 2038 1.204467 CTGGCAACCTCTCACTCTCTC 59.796 57.143 0.00 0.00 0.00 3.20
1962 2045 0.835971 TGTAGCCTGGCAACCTCTCA 60.836 55.000 22.65 5.96 0.00 3.27
1969 2052 3.386078 TGTTTCAATTTGTAGCCTGGCAA 59.614 39.130 22.65 6.54 0.00 4.52
2010 2093 2.869801 TGGCGACAACTAACAAGTTCAG 59.130 45.455 0.00 0.00 37.44 3.02
2028 2111 2.985847 AAGCTCCGCAACCTTGGC 60.986 61.111 0.00 0.00 0.00 4.52
2108 2191 1.080298 GCTGCCTGGTCAAACATGC 60.080 57.895 0.00 0.00 33.37 4.06
2324 2408 1.171308 CAAACAGGAGGATGGTGCAG 58.829 55.000 0.00 0.00 0.00 4.41
2342 2426 4.299155 TGAAGCGAAACAACACAAAAACA 58.701 34.783 0.00 0.00 0.00 2.83
2358 2442 2.166459 TCAGACCTCCTGTAATGAAGCG 59.834 50.000 0.00 0.00 43.38 4.68
2378 2462 9.423061 AGCTAATTTGACATTAACCACAATTTC 57.577 29.630 0.00 0.00 0.00 2.17
2437 2521 4.713553 TGCTCTGATACCTAGAGACTGAG 58.286 47.826 6.22 0.00 43.41 3.35
2463 2547 5.045872 GGCATCCTTTATTTGACAGCAATC 58.954 41.667 0.00 0.00 33.25 2.67
2522 2606 5.988561 GTGGCAAGACAAAATATCCAAAACA 59.011 36.000 0.00 0.00 0.00 2.83
2534 2618 2.375174 AGGGAGTATGTGGCAAGACAAA 59.625 45.455 0.00 0.00 0.00 2.83
2548 2632 5.045140 CACTTATTTTGGGAAGGAGGGAGTA 60.045 44.000 0.00 0.00 0.00 2.59
2549 2633 3.923425 ACTTATTTTGGGAAGGAGGGAGT 59.077 43.478 0.00 0.00 0.00 3.85
2550 2634 4.263949 ACACTTATTTTGGGAAGGAGGGAG 60.264 45.833 0.00 0.00 0.00 4.30
2551 2635 3.660669 ACACTTATTTTGGGAAGGAGGGA 59.339 43.478 0.00 0.00 0.00 4.20
2552 2636 4.017126 GACACTTATTTTGGGAAGGAGGG 58.983 47.826 0.00 0.00 0.00 4.30
2553 2637 4.923415 AGACACTTATTTTGGGAAGGAGG 58.077 43.478 0.00 0.00 0.00 4.30
2554 2638 5.560724 TGAGACACTTATTTTGGGAAGGAG 58.439 41.667 0.00 0.00 0.00 3.69
2555 2639 5.576563 TGAGACACTTATTTTGGGAAGGA 57.423 39.130 0.00 0.00 0.00 3.36
2556 2640 5.770162 AGTTGAGACACTTATTTTGGGAAGG 59.230 40.000 0.00 0.00 0.00 3.46
2557 2641 6.884280 AGTTGAGACACTTATTTTGGGAAG 57.116 37.500 0.00 0.00 0.00 3.46
2558 2642 7.654022 AAAGTTGAGACACTTATTTTGGGAA 57.346 32.000 0.00 0.00 35.87 3.97
2559 2643 7.996644 ACTAAAGTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
2560 2644 8.166422 ACTAAAGTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
2565 2649 9.708092 GAAGGTACTAAAGTTGAGACACTTATT 57.292 33.333 0.00 0.00 38.49 1.40
2566 2650 8.312564 GGAAGGTACTAAAGTTGAGACACTTAT 58.687 37.037 0.00 0.00 38.49 1.73
2567 2651 7.256083 GGGAAGGTACTAAAGTTGAGACACTTA 60.256 40.741 0.00 0.00 38.49 2.24
2568 2652 6.464039 GGGAAGGTACTAAAGTTGAGACACTT 60.464 42.308 0.00 0.00 38.49 3.16
2569 2653 5.011840 GGGAAGGTACTAAAGTTGAGACACT 59.988 44.000 0.00 0.00 38.49 3.55
2570 2654 5.221581 TGGGAAGGTACTAAAGTTGAGACAC 60.222 44.000 0.00 0.00 38.49 3.67
2571 2655 4.903049 TGGGAAGGTACTAAAGTTGAGACA 59.097 41.667 0.00 0.00 38.49 3.41
2572 2656 5.479124 TGGGAAGGTACTAAAGTTGAGAC 57.521 43.478 0.00 0.00 38.49 3.36
2573 2657 6.503560 TTTGGGAAGGTACTAAAGTTGAGA 57.496 37.500 0.00 0.00 38.49 3.27
2574 2658 7.761038 ATTTTGGGAAGGTACTAAAGTTGAG 57.239 36.000 0.00 0.00 38.49 3.02
2575 2659 9.292195 CTTATTTTGGGAAGGTACTAAAGTTGA 57.708 33.333 0.00 0.00 38.49 3.18
2576 2660 9.074576 ACTTATTTTGGGAAGGTACTAAAGTTG 57.925 33.333 0.00 0.00 38.49 3.16
2577 2661 9.074576 CACTTATTTTGGGAAGGTACTAAAGTT 57.925 33.333 0.00 0.00 38.49 2.66
2578 2662 8.222637 ACACTTATTTTGGGAAGGTACTAAAGT 58.777 33.333 0.00 0.00 38.49 2.66
2579 2663 8.631480 ACACTTATTTTGGGAAGGTACTAAAG 57.369 34.615 0.00 0.00 38.49 1.85
2580 2664 8.442374 AGACACTTATTTTGGGAAGGTACTAAA 58.558 33.333 0.00 0.00 38.49 1.85
2581 2665 7.981142 AGACACTTATTTTGGGAAGGTACTAA 58.019 34.615 0.00 0.00 38.49 2.24
2582 2666 7.236019 TGAGACACTTATTTTGGGAAGGTACTA 59.764 37.037 0.00 0.00 38.49 1.82
2584 2668 6.235664 TGAGACACTTATTTTGGGAAGGTAC 58.764 40.000 0.00 0.00 0.00 3.34
2585 2669 6.442541 TGAGACACTTATTTTGGGAAGGTA 57.557 37.500 0.00 0.00 0.00 3.08
2586 2670 5.319043 TGAGACACTTATTTTGGGAAGGT 57.681 39.130 0.00 0.00 0.00 3.50
2587 2671 5.770162 AGTTGAGACACTTATTTTGGGAAGG 59.230 40.000 0.00 0.00 0.00 3.46
2588 2672 6.884280 AGTTGAGACACTTATTTTGGGAAG 57.116 37.500 0.00 0.00 0.00 3.46
2589 2673 7.654022 AAAGTTGAGACACTTATTTTGGGAA 57.346 32.000 0.00 0.00 35.87 3.97
2590 2674 7.996644 AGTAAAGTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
2591 2675 8.166422 AGTAAAGTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
2614 2698 9.014297 CATCCCAAAATAAGTCTCAACTTTAGT 57.986 33.333 0.00 0.00 43.28 2.24
2615 2699 8.462016 CCATCCCAAAATAAGTCTCAACTTTAG 58.538 37.037 0.00 0.00 43.28 1.85
2616 2700 8.167392 TCCATCCCAAAATAAGTCTCAACTTTA 58.833 33.333 0.00 0.00 43.28 1.85
2617 2701 7.010160 TCCATCCCAAAATAAGTCTCAACTTT 58.990 34.615 0.00 0.00 43.28 2.66
2619 2703 6.139679 TCCATCCCAAAATAAGTCTCAACT 57.860 37.500 0.00 0.00 37.32 3.16
2620 2704 5.358160 CCTCCATCCCAAAATAAGTCTCAAC 59.642 44.000 0.00 0.00 0.00 3.18
2621 2705 5.509498 CCTCCATCCCAAAATAAGTCTCAA 58.491 41.667 0.00 0.00 0.00 3.02
2622 2706 4.079787 CCCTCCATCCCAAAATAAGTCTCA 60.080 45.833 0.00 0.00 0.00 3.27
2623 2707 4.166144 TCCCTCCATCCCAAAATAAGTCTC 59.834 45.833 0.00 0.00 0.00 3.36
2624 2708 4.119155 TCCCTCCATCCCAAAATAAGTCT 58.881 43.478 0.00 0.00 0.00 3.24
2625 2709 4.079730 ACTCCCTCCATCCCAAAATAAGTC 60.080 45.833 0.00 0.00 0.00 3.01
2626 2710 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
2627 2711 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
2628 2712 6.606241 ATTACTCCCTCCATCCCAAAATAA 57.394 37.500 0.00 0.00 0.00 1.40
2629 2713 7.905144 ATATTACTCCCTCCATCCCAAAATA 57.095 36.000 0.00 0.00 0.00 1.40
2630 2714 6.803587 ATATTACTCCCTCCATCCCAAAAT 57.196 37.500 0.00 0.00 0.00 1.82
2631 2715 6.606241 AATATTACTCCCTCCATCCCAAAA 57.394 37.500 0.00 0.00 0.00 2.44
2632 2716 6.606241 AAATATTACTCCCTCCATCCCAAA 57.394 37.500 0.00 0.00 0.00 3.28
2633 2717 6.606241 AAAATATTACTCCCTCCATCCCAA 57.394 37.500 0.00 0.00 0.00 4.12
2634 2718 7.017254 GTCTAAAATATTACTCCCTCCATCCCA 59.983 40.741 0.00 0.00 0.00 4.37
2635 2719 7.017254 TGTCTAAAATATTACTCCCTCCATCCC 59.983 40.741 0.00 0.00 0.00 3.85
2636 2720 7.974504 TGTCTAAAATATTACTCCCTCCATCC 58.025 38.462 0.00 0.00 0.00 3.51
2643 2727 9.833917 GCCCTATATGTCTAAAATATTACTCCC 57.166 37.037 0.00 0.00 0.00 4.30
2644 2728 9.833917 GGCCCTATATGTCTAAAATATTACTCC 57.166 37.037 0.00 0.00 0.00 3.85
2870 2955 5.762179 AACCATCCAACTATTGTCAGAGA 57.238 39.130 0.00 0.00 0.00 3.10
2924 3009 4.169059 TGGGTCCAGATATGAACCAATG 57.831 45.455 0.00 0.00 46.40 2.82
3017 3104 2.638480 ACTGCAGGTCAGCTTAACAA 57.362 45.000 19.93 0.00 46.76 2.83
3039 3126 3.376859 TCAACACCTAAGCAACACAACAG 59.623 43.478 0.00 0.00 0.00 3.16
3171 3258 5.821097 TGGTTGGGATTGACATTATACACA 58.179 37.500 0.00 0.00 0.00 3.72
3312 3399 9.437045 CATTGATTGATTCGTCAAATTATTCGA 57.563 29.630 7.95 0.00 37.82 3.71
3313 3400 9.437045 TCATTGATTGATTCGTCAAATTATTCG 57.563 29.630 7.95 0.00 37.82 3.34
3520 3612 2.186160 CAACTGTTCCACTGGCGCA 61.186 57.895 10.83 0.00 0.00 6.09
3784 3876 4.502962 CAGGGCAGACAAAAAGTTTGAAA 58.497 39.130 7.68 0.00 34.39 2.69
3785 3877 3.118811 CCAGGGCAGACAAAAAGTTTGAA 60.119 43.478 7.68 0.00 34.39 2.69
3786 3878 2.430332 CCAGGGCAGACAAAAAGTTTGA 59.570 45.455 7.68 0.00 34.39 2.69
3787 3879 2.168313 ACCAGGGCAGACAAAAAGTTTG 59.832 45.455 0.00 0.00 35.54 2.93
3788 3880 2.168313 CACCAGGGCAGACAAAAAGTTT 59.832 45.455 0.00 0.00 0.00 2.66
3789 3881 1.756538 CACCAGGGCAGACAAAAAGTT 59.243 47.619 0.00 0.00 0.00 2.66
3790 3882 1.341976 ACACCAGGGCAGACAAAAAGT 60.342 47.619 0.00 0.00 0.00 2.66
3791 3883 1.402787 ACACCAGGGCAGACAAAAAG 58.597 50.000 0.00 0.00 0.00 2.27
3792 3884 1.859302 AACACCAGGGCAGACAAAAA 58.141 45.000 0.00 0.00 0.00 1.94
3864 3957 7.676004 TGACAGATAAATAGTGGTTTGACTGA 58.324 34.615 0.00 0.00 33.79 3.41
3943 4046 8.675705 TGATGTTCAAGTATTCTTCTGTTTCA 57.324 30.769 0.00 0.00 0.00 2.69
4002 4107 9.962759 CTGCAAGCAAAATAATCTAAAATGTTC 57.037 29.630 0.00 0.00 0.00 3.18
4009 4124 7.325821 CGAAACACTGCAAGCAAAATAATCTAA 59.674 33.333 0.00 0.00 37.60 2.10
4010 4125 6.801377 CGAAACACTGCAAGCAAAATAATCTA 59.199 34.615 0.00 0.00 37.60 1.98
4011 4126 5.630680 CGAAACACTGCAAGCAAAATAATCT 59.369 36.000 0.00 0.00 37.60 2.40
4012 4127 5.402270 ACGAAACACTGCAAGCAAAATAATC 59.598 36.000 0.00 0.00 37.60 1.75
4013 4128 5.175491 CACGAAACACTGCAAGCAAAATAAT 59.825 36.000 0.00 0.00 37.60 1.28
4014 4129 4.502282 CACGAAACACTGCAAGCAAAATAA 59.498 37.500 0.00 0.00 37.60 1.40
4015 4130 4.041049 CACGAAACACTGCAAGCAAAATA 58.959 39.130 0.00 0.00 37.60 1.40
4016 4131 2.859538 CACGAAACACTGCAAGCAAAAT 59.140 40.909 0.00 0.00 37.60 1.82
4017 4132 2.257894 CACGAAACACTGCAAGCAAAA 58.742 42.857 0.00 0.00 37.60 2.44
4018 4133 1.906757 CACGAAACACTGCAAGCAAA 58.093 45.000 0.00 0.00 37.60 3.68
4019 4134 0.525242 GCACGAAACACTGCAAGCAA 60.525 50.000 0.00 0.00 37.60 3.91
4219 4336 3.364549 TGGATGGTCCATGGAAACAATC 58.635 45.455 18.20 13.85 42.67 2.67
4274 4391 5.614013 GCAAACATCTGCAGCTTTCATTTTC 60.614 40.000 9.47 0.00 42.17 2.29
4340 4462 5.894298 TCTAGTCAATGGCTCCATATGTT 57.106 39.130 1.24 1.05 35.31 2.71
4394 4595 9.416284 GTAATTTGATAACCATTCTTAAGGGGA 57.584 33.333 13.45 0.00 36.44 4.81
4395 4596 9.421399 AGTAATTTGATAACCATTCTTAAGGGG 57.579 33.333 1.85 5.03 36.44 4.79
4471 4672 4.591929 ACCTCTCTAGTCTGTACTCAACC 58.408 47.826 0.00 0.00 37.15 3.77
4627 4870 4.020396 TCCACTACTACATTTTAACCCGCA 60.020 41.667 0.00 0.00 0.00 5.69
4849 5454 8.067751 TCCGATAGAAATAACATATCCTCCTG 57.932 38.462 0.00 0.00 39.76 3.86
4891 5496 1.534163 GAAACGAAGGGAAACGAAGGG 59.466 52.381 0.00 0.00 0.00 3.95
4893 5498 2.610374 TGTGAAACGAAGGGAAACGAAG 59.390 45.455 0.00 0.00 42.39 3.79
4895 5500 2.312722 TGTGAAACGAAGGGAAACGA 57.687 45.000 0.00 0.00 42.39 3.85
4896 5501 3.619233 ATTGTGAAACGAAGGGAAACG 57.381 42.857 0.00 0.00 42.39 3.60
4897 5502 7.241376 CACTATATTGTGAAACGAAGGGAAAC 58.759 38.462 11.32 0.00 42.39 2.78
4898 5503 6.128117 GCACTATATTGTGAAACGAAGGGAAA 60.128 38.462 19.58 0.00 42.39 3.13
4899 5504 5.353123 GCACTATATTGTGAAACGAAGGGAA 59.647 40.000 19.58 0.00 42.39 3.97
4900 5505 4.873827 GCACTATATTGTGAAACGAAGGGA 59.126 41.667 19.58 0.00 42.39 4.20
4901 5506 4.634004 TGCACTATATTGTGAAACGAAGGG 59.366 41.667 19.58 0.00 42.39 3.95
4902 5507 5.794687 TGCACTATATTGTGAAACGAAGG 57.205 39.130 19.58 0.00 42.39 3.46
4903 5508 8.764287 TCATATGCACTATATTGTGAAACGAAG 58.236 33.333 19.58 4.49 40.12 3.79
4904 5509 8.655651 TCATATGCACTATATTGTGAAACGAA 57.344 30.769 19.58 0.00 40.12 3.85
4905 5510 8.831715 ATCATATGCACTATATTGTGAAACGA 57.168 30.769 19.58 8.73 40.12 3.85
4940 5546 4.709397 TGGTCAAAGTTTGTGAGGTTTGAT 59.291 37.500 15.08 0.00 40.16 2.57
4948 5554 7.831753 TCTACAAATTTGGTCAAAGTTTGTGA 58.168 30.769 25.42 21.01 39.43 3.58
4969 5575 5.938125 TGGCAACCTAGATGTTTTTCTCTAC 59.062 40.000 0.00 0.00 0.00 2.59
4970 5576 6.121776 TGGCAACCTAGATGTTTTTCTCTA 57.878 37.500 0.00 0.00 0.00 2.43
4971 5577 4.985538 TGGCAACCTAGATGTTTTTCTCT 58.014 39.130 0.00 0.00 0.00 3.10
4972 5578 5.705609 TTGGCAACCTAGATGTTTTTCTC 57.294 39.130 0.00 0.00 0.00 2.87
4973 5579 6.478512 TTTTGGCAACCTAGATGTTTTTCT 57.521 33.333 0.00 0.00 0.00 2.52
4974 5580 7.870445 TGTATTTTGGCAACCTAGATGTTTTTC 59.130 33.333 0.00 0.00 0.00 2.29
4975 5581 7.731054 TGTATTTTGGCAACCTAGATGTTTTT 58.269 30.769 0.00 0.00 0.00 1.94
4976 5582 7.296628 TGTATTTTGGCAACCTAGATGTTTT 57.703 32.000 0.00 0.00 0.00 2.43
4977 5583 6.909550 TGTATTTTGGCAACCTAGATGTTT 57.090 33.333 0.00 0.00 0.00 2.83
4978 5584 6.891908 AGATGTATTTTGGCAACCTAGATGTT 59.108 34.615 0.00 0.00 0.00 2.71
4979 5585 6.426587 AGATGTATTTTGGCAACCTAGATGT 58.573 36.000 0.00 0.00 0.00 3.06
4980 5586 6.543465 TGAGATGTATTTTGGCAACCTAGATG 59.457 38.462 0.00 0.00 0.00 2.90
4981 5587 6.662755 TGAGATGTATTTTGGCAACCTAGAT 58.337 36.000 0.00 0.00 0.00 1.98
4982 5588 6.061022 TGAGATGTATTTTGGCAACCTAGA 57.939 37.500 0.00 0.00 0.00 2.43
4983 5589 6.949352 ATGAGATGTATTTTGGCAACCTAG 57.051 37.500 0.00 0.00 0.00 3.02
4984 5590 8.271458 TCTAATGAGATGTATTTTGGCAACCTA 58.729 33.333 0.00 0.00 0.00 3.08
4985 5591 7.118723 TCTAATGAGATGTATTTTGGCAACCT 58.881 34.615 0.00 0.00 0.00 3.50
4986 5592 7.333528 TCTAATGAGATGTATTTTGGCAACC 57.666 36.000 0.00 0.00 0.00 3.77
4987 5593 9.455847 GAATCTAATGAGATGTATTTTGGCAAC 57.544 33.333 0.00 0.00 41.87 4.17
4988 5594 9.187996 TGAATCTAATGAGATGTATTTTGGCAA 57.812 29.630 0.00 0.00 41.87 4.52
4989 5595 8.750515 TGAATCTAATGAGATGTATTTTGGCA 57.249 30.769 0.00 0.00 41.87 4.92
4990 5596 9.455847 GTTGAATCTAATGAGATGTATTTTGGC 57.544 33.333 0.00 0.00 41.87 4.52
5065 5671 9.185680 ACTTTGACCAAGTTTATACAGAAAACT 57.814 29.630 0.00 0.00 43.89 2.66
5080 5686 7.812669 AGTCAAACTTTACAAACTTTGACCAAG 59.187 33.333 22.51 8.83 44.13 3.61
5081 5687 7.662897 AGTCAAACTTTACAAACTTTGACCAA 58.337 30.769 22.51 0.00 44.13 3.67
5082 5688 7.222000 AGTCAAACTTTACAAACTTTGACCA 57.778 32.000 22.51 2.11 44.13 4.02
5083 5689 9.628746 TTAAGTCAAACTTTACAAACTTTGACC 57.371 29.630 22.51 13.06 44.13 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.