Multiple sequence alignment - TraesCS3D01G318900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G318900 chr3D 100.000 3326 0 0 1 3326 432543962 432547287 0.000000e+00 6143
1 TraesCS3D01G318900 chr3D 95.238 84 4 0 396 479 432544297 432544380 2.080000e-27 134
2 TraesCS3D01G318900 chr3D 95.238 84 4 0 336 419 432544357 432544440 2.080000e-27 134
3 TraesCS3D01G318900 chr3A 94.123 1191 42 14 1757 2946 570793338 570794501 0.000000e+00 1786
4 TraesCS3D01G318900 chr3A 95.349 645 30 0 1121 1765 570744102 570744746 0.000000e+00 1026
5 TraesCS3D01G318900 chr3A 93.714 525 27 4 1 523 570674687 570675207 0.000000e+00 782
6 TraesCS3D01G318900 chr3A 94.570 442 24 0 1032 1473 570675736 570676177 0.000000e+00 684
7 TraesCS3D01G318900 chr3A 86.063 287 12 14 2930 3192 570794515 570794797 1.950000e-72 283
8 TraesCS3D01G318900 chr3A 82.781 151 5 9 3197 3326 570794905 570795055 7.540000e-22 115
9 TraesCS3D01G318900 chr3B 94.306 562 27 3 1608 2169 564774770 564775326 0.000000e+00 856
10 TraesCS3D01G318900 chr3B 93.634 377 23 1 2301 2677 564775628 564776003 2.240000e-156 562
11 TraesCS3D01G318900 chr3B 84.065 615 41 22 2753 3321 564775994 564776597 1.050000e-149 540
12 TraesCS3D01G318900 chr3B 91.254 343 25 3 2 340 564773450 564773791 2.340000e-126 462
13 TraesCS3D01G318900 chr3B 90.476 126 8 3 442 566 564774646 564774768 2.660000e-36 163
14 TraesCS3D01G318900 chr3B 95.789 95 3 1 2159 2253 564775532 564775625 5.750000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G318900 chr3D 432543962 432547287 3325 False 2137.000000 6143 96.825333 1 3326 3 chr3D.!!$F1 3325
1 TraesCS3D01G318900 chr3A 570744102 570744746 644 False 1026.000000 1026 95.349000 1121 1765 1 chr3A.!!$F1 644
2 TraesCS3D01G318900 chr3A 570674687 570676177 1490 False 733.000000 782 94.142000 1 1473 2 chr3A.!!$F2 1472
3 TraesCS3D01G318900 chr3A 570793338 570795055 1717 False 728.000000 1786 87.655667 1757 3326 3 chr3A.!!$F3 1569
4 TraesCS3D01G318900 chr3B 564773450 564776597 3147 False 455.833333 856 91.587333 2 3321 6 chr3B.!!$F1 3319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 1637 0.028374 CGTGTTGTCCCGTCCAAAAC 59.972 55.0 0.00 0.0 0.00 2.43 F
1024 1842 0.250793 ATCGCACCAACGGGAACATA 59.749 50.0 0.00 0.0 38.05 2.29 F
1573 2695 0.253044 TGGCATTGCACTCTCTACCC 59.747 55.0 11.39 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 2956 0.521735 GTGAAAGTGCCGAATGGGTC 59.478 55.0 0.00 0.00 38.44 4.46 R
1959 3082 0.752376 GGTAGCTAGAGCCACCGACT 60.752 60.0 3.30 0.00 42.49 4.18 R
3082 4536 0.041488 CCGATGTACGTACCTCGAGC 60.041 60.0 38.05 18.51 43.76 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.023963 GCAGTTTTACAAGTGAAGACCCTC 60.024 45.833 0.50 0.00 35.56 4.30
99 104 1.061546 TGCGGGAAACTAACCTCCTT 58.938 50.000 0.00 0.00 31.88 3.36
136 141 4.740822 GACAAGGCCCGCCCACAT 62.741 66.667 0.00 0.00 36.58 3.21
193 198 0.891373 CGTCATGAGGTGTCCACTCT 59.109 55.000 7.25 0.00 35.98 3.24
359 747 7.202047 CCTTCTATGTGTTTTAGGATCCTAGCT 60.202 40.741 20.72 0.00 0.00 3.32
360 748 8.777578 TTCTATGTGTTTTAGGATCCTAGCTA 57.222 34.615 20.72 4.55 0.00 3.32
368 756 7.827729 TGTTTTAGGATCCTAGCTAGGTTTTTC 59.172 37.037 33.84 24.87 44.02 2.29
395 1212 6.647067 GCACTAGTGACTCACTTAGACAATTT 59.353 38.462 27.08 0.00 42.59 1.82
434 1251 2.284190 CTAGCTAGGCTTTTCTGCACC 58.716 52.381 13.32 0.00 40.44 5.01
440 1257 1.032014 GGCTTTTCTGCACCAGTGAA 58.968 50.000 0.99 0.00 32.61 3.18
479 1296 6.085555 TCTATGTGTTTTAGGATCCTAGCG 57.914 41.667 20.72 4.36 0.00 4.26
504 1321 4.623886 GCATACATTGAGGACTCCACAAGA 60.624 45.833 12.75 2.91 37.50 3.02
552 1370 2.237143 AGCCCTTCAGATCGAACATGAA 59.763 45.455 0.00 9.20 0.00 2.57
561 1379 5.066634 TCAGATCGAACATGAAGTAGGAGTC 59.933 44.000 0.00 0.00 0.00 3.36
566 1384 5.944599 TCGAACATGAAGTAGGAGTCTAGTT 59.055 40.000 0.00 0.00 40.70 2.24
567 1385 6.030849 CGAACATGAAGTAGGAGTCTAGTTG 58.969 44.000 0.00 0.00 38.76 3.16
568 1386 5.923733 ACATGAAGTAGGAGTCTAGTTGG 57.076 43.478 0.00 0.00 38.76 3.77
569 1387 4.160626 ACATGAAGTAGGAGTCTAGTTGGC 59.839 45.833 0.00 0.00 38.76 4.52
570 1388 3.774734 TGAAGTAGGAGTCTAGTTGGCA 58.225 45.455 0.00 0.00 38.76 4.92
571 1389 4.157246 TGAAGTAGGAGTCTAGTTGGCAA 58.843 43.478 0.00 0.00 38.76 4.52
572 1390 4.591498 TGAAGTAGGAGTCTAGTTGGCAAA 59.409 41.667 0.00 0.00 38.76 3.68
573 1391 5.248477 TGAAGTAGGAGTCTAGTTGGCAAAT 59.752 40.000 5.23 5.23 38.76 2.32
574 1392 6.439375 TGAAGTAGGAGTCTAGTTGGCAAATA 59.561 38.462 0.00 3.92 38.76 1.40
575 1393 6.223351 AGTAGGAGTCTAGTTGGCAAATAC 57.777 41.667 0.00 0.00 0.00 1.89
576 1394 4.489306 AGGAGTCTAGTTGGCAAATACC 57.511 45.455 0.00 2.56 0.00 2.73
577 1395 4.104831 AGGAGTCTAGTTGGCAAATACCT 58.895 43.478 0.00 5.10 0.00 3.08
578 1396 4.080863 AGGAGTCTAGTTGGCAAATACCTG 60.081 45.833 12.13 0.96 0.00 4.00
579 1397 4.192317 GAGTCTAGTTGGCAAATACCTGG 58.808 47.826 0.00 0.00 0.00 4.45
580 1398 2.683362 GTCTAGTTGGCAAATACCTGGC 59.317 50.000 0.00 0.00 42.07 4.85
584 1402 3.446658 TGGCAAATACCTGGCACAA 57.553 47.368 0.00 0.00 46.00 3.33
585 1403 1.935799 TGGCAAATACCTGGCACAAT 58.064 45.000 0.00 0.00 46.00 2.71
586 1404 3.093057 TGGCAAATACCTGGCACAATA 57.907 42.857 0.00 0.00 46.00 1.90
587 1405 2.757868 TGGCAAATACCTGGCACAATAC 59.242 45.455 0.00 0.00 46.00 1.89
588 1406 2.223479 GGCAAATACCTGGCACAATACG 60.223 50.000 0.00 0.00 41.38 3.06
589 1407 2.680841 GCAAATACCTGGCACAATACGA 59.319 45.455 0.00 0.00 38.70 3.43
590 1408 3.127895 GCAAATACCTGGCACAATACGAA 59.872 43.478 0.00 0.00 38.70 3.85
591 1409 4.202010 GCAAATACCTGGCACAATACGAAT 60.202 41.667 0.00 0.00 38.70 3.34
592 1410 5.678616 GCAAATACCTGGCACAATACGAATT 60.679 40.000 0.00 0.00 38.70 2.17
593 1411 6.459024 GCAAATACCTGGCACAATACGAATTA 60.459 38.462 0.00 0.00 38.70 1.40
594 1412 6.861065 AATACCTGGCACAATACGAATTAG 57.139 37.500 0.00 0.00 38.70 1.73
595 1413 2.943033 ACCTGGCACAATACGAATTAGC 59.057 45.455 0.00 0.00 38.70 3.09
596 1414 2.942376 CCTGGCACAATACGAATTAGCA 59.058 45.455 0.00 0.00 38.70 3.49
597 1415 3.565482 CCTGGCACAATACGAATTAGCAT 59.435 43.478 0.00 0.00 38.70 3.79
598 1416 4.530388 CTGGCACAATACGAATTAGCATG 58.470 43.478 0.00 0.00 38.70 4.06
599 1417 3.944650 TGGCACAATACGAATTAGCATGT 59.055 39.130 0.00 0.00 31.92 3.21
600 1418 4.035091 TGGCACAATACGAATTAGCATGTC 59.965 41.667 0.00 0.00 31.92 3.06
601 1419 4.035091 GGCACAATACGAATTAGCATGTCA 59.965 41.667 0.00 0.00 30.73 3.58
602 1420 5.448496 GGCACAATACGAATTAGCATGTCAA 60.448 40.000 0.00 0.00 30.73 3.18
603 1421 6.201517 GCACAATACGAATTAGCATGTCAAT 58.798 36.000 0.00 0.00 0.00 2.57
604 1422 7.351981 GCACAATACGAATTAGCATGTCAATA 58.648 34.615 0.00 0.00 0.00 1.90
605 1423 7.321271 GCACAATACGAATTAGCATGTCAATAC 59.679 37.037 0.00 0.00 0.00 1.89
606 1424 8.334632 CACAATACGAATTAGCATGTCAATACA 58.665 33.333 0.00 0.00 40.69 2.29
607 1425 8.888716 ACAATACGAATTAGCATGTCAATACAA 58.111 29.630 0.00 0.00 39.58 2.41
608 1426 9.373750 CAATACGAATTAGCATGTCAATACAAG 57.626 33.333 0.00 0.00 39.58 3.16
609 1427 8.887036 ATACGAATTAGCATGTCAATACAAGA 57.113 30.769 0.00 0.00 39.58 3.02
610 1428 7.609760 ACGAATTAGCATGTCAATACAAGAA 57.390 32.000 0.00 0.00 39.58 2.52
611 1429 8.039603 ACGAATTAGCATGTCAATACAAGAAA 57.960 30.769 0.00 0.00 39.58 2.52
612 1430 7.962918 ACGAATTAGCATGTCAATACAAGAAAC 59.037 33.333 0.00 0.00 39.58 2.78
613 1431 7.162546 CGAATTAGCATGTCAATACAAGAAACG 59.837 37.037 0.00 0.00 39.58 3.60
614 1432 6.795098 TTAGCATGTCAATACAAGAAACGT 57.205 33.333 0.00 0.00 39.58 3.99
615 1433 5.689383 AGCATGTCAATACAAGAAACGTT 57.311 34.783 0.00 0.00 39.58 3.99
616 1434 5.451908 AGCATGTCAATACAAGAAACGTTG 58.548 37.500 0.00 0.00 39.58 4.10
617 1435 5.008613 AGCATGTCAATACAAGAAACGTTGT 59.991 36.000 0.00 0.00 43.22 3.32
618 1436 6.203915 AGCATGTCAATACAAGAAACGTTGTA 59.796 34.615 0.00 0.03 44.86 2.41
619 1437 6.853872 GCATGTCAATACAAGAAACGTTGTAA 59.146 34.615 0.00 0.00 44.15 2.41
620 1438 7.377397 GCATGTCAATACAAGAAACGTTGTAAA 59.623 33.333 0.00 0.00 44.15 2.01
621 1439 9.393249 CATGTCAATACAAGAAACGTTGTAAAT 57.607 29.630 0.00 0.00 44.15 1.40
622 1440 9.959749 ATGTCAATACAAGAAACGTTGTAAATT 57.040 25.926 0.00 0.00 44.15 1.82
628 1446 7.631915 ACAAGAAACGTTGTAAATTATTGCC 57.368 32.000 0.00 0.00 38.92 4.52
629 1447 7.203910 ACAAGAAACGTTGTAAATTATTGCCA 58.796 30.769 0.00 0.00 38.92 4.92
630 1448 7.707035 ACAAGAAACGTTGTAAATTATTGCCAA 59.293 29.630 0.00 0.00 38.92 4.52
631 1449 8.543774 CAAGAAACGTTGTAAATTATTGCCAAA 58.456 29.630 0.00 0.00 0.00 3.28
632 1450 8.649973 AGAAACGTTGTAAATTATTGCCAAAA 57.350 26.923 0.00 0.00 0.00 2.44
633 1451 8.760569 AGAAACGTTGTAAATTATTGCCAAAAG 58.239 29.630 0.00 0.00 0.00 2.27
634 1452 8.649973 AAACGTTGTAAATTATTGCCAAAAGA 57.350 26.923 0.00 0.00 0.00 2.52
635 1453 8.825667 AACGTTGTAAATTATTGCCAAAAGAT 57.174 26.923 0.00 0.00 0.00 2.40
636 1454 9.915629 AACGTTGTAAATTATTGCCAAAAGATA 57.084 25.926 0.00 0.00 0.00 1.98
637 1455 9.915629 ACGTTGTAAATTATTGCCAAAAGATAA 57.084 25.926 0.00 0.00 0.00 1.75
665 1483 7.667043 AAATTAAAACTCGTAGACTGATGCA 57.333 32.000 0.00 0.00 0.00 3.96
666 1484 7.667043 AATTAAAACTCGTAGACTGATGCAA 57.333 32.000 0.00 0.00 0.00 4.08
667 1485 6.706055 TTAAAACTCGTAGACTGATGCAAG 57.294 37.500 0.00 0.00 0.00 4.01
668 1486 3.944055 AACTCGTAGACTGATGCAAGT 57.056 42.857 0.00 0.00 0.00 3.16
669 1487 3.223423 ACTCGTAGACTGATGCAAGTG 57.777 47.619 0.00 0.00 0.00 3.16
670 1488 1.923204 CTCGTAGACTGATGCAAGTGC 59.077 52.381 0.00 0.00 42.50 4.40
682 1500 1.373570 GCAAGTGCATGTAGTCCTCC 58.626 55.000 0.00 0.00 41.59 4.30
683 1501 1.339055 GCAAGTGCATGTAGTCCTCCA 60.339 52.381 0.00 0.00 41.59 3.86
684 1502 2.875672 GCAAGTGCATGTAGTCCTCCAA 60.876 50.000 0.00 0.00 41.59 3.53
685 1503 3.614092 CAAGTGCATGTAGTCCTCCAAT 58.386 45.455 0.00 0.00 0.00 3.16
686 1504 4.012374 CAAGTGCATGTAGTCCTCCAATT 58.988 43.478 0.00 0.00 0.00 2.32
687 1505 4.307032 AGTGCATGTAGTCCTCCAATTT 57.693 40.909 0.00 0.00 0.00 1.82
688 1506 4.666512 AGTGCATGTAGTCCTCCAATTTT 58.333 39.130 0.00 0.00 0.00 1.82
689 1507 4.460382 AGTGCATGTAGTCCTCCAATTTTG 59.540 41.667 0.00 0.00 0.00 2.44
702 1520 4.968812 CCAATTTTGGCAATCATTTCCC 57.031 40.909 0.00 0.00 42.21 3.97
703 1521 3.695556 CCAATTTTGGCAATCATTTCCCC 59.304 43.478 0.00 0.00 42.21 4.81
704 1522 4.568169 CCAATTTTGGCAATCATTTCCCCT 60.568 41.667 0.00 0.00 42.21 4.79
705 1523 5.339035 CCAATTTTGGCAATCATTTCCCCTA 60.339 40.000 0.00 0.00 42.21 3.53
706 1524 4.817318 TTTTGGCAATCATTTCCCCTAC 57.183 40.909 0.00 0.00 0.00 3.18
707 1525 2.452600 TGGCAATCATTTCCCCTACC 57.547 50.000 0.00 0.00 0.00 3.18
708 1526 1.643286 TGGCAATCATTTCCCCTACCA 59.357 47.619 0.00 0.00 0.00 3.25
709 1527 2.247111 TGGCAATCATTTCCCCTACCAT 59.753 45.455 0.00 0.00 0.00 3.55
710 1528 2.629617 GGCAATCATTTCCCCTACCATG 59.370 50.000 0.00 0.00 0.00 3.66
711 1529 3.565307 GCAATCATTTCCCCTACCATGA 58.435 45.455 0.00 0.00 0.00 3.07
712 1530 4.154942 GCAATCATTTCCCCTACCATGAT 58.845 43.478 0.00 0.00 37.87 2.45
713 1531 4.021719 GCAATCATTTCCCCTACCATGATG 60.022 45.833 0.00 0.00 36.65 3.07
714 1532 5.387788 CAATCATTTCCCCTACCATGATGA 58.612 41.667 0.00 0.00 36.65 2.92
718 1536 4.437682 TTTCCCCTACCATGATGATGAC 57.562 45.455 0.00 0.00 0.00 3.06
720 1538 3.392730 TCCCCTACCATGATGATGACAA 58.607 45.455 0.00 0.00 0.00 3.18
721 1539 3.785325 TCCCCTACCATGATGATGACAAA 59.215 43.478 0.00 0.00 0.00 2.83
722 1540 4.229353 TCCCCTACCATGATGATGACAAAA 59.771 41.667 0.00 0.00 0.00 2.44
723 1541 4.581824 CCCCTACCATGATGATGACAAAAG 59.418 45.833 0.00 0.00 0.00 2.27
726 1544 6.118170 CCTACCATGATGATGACAAAAGTCT 58.882 40.000 0.00 0.00 0.00 3.24
727 1545 6.259608 CCTACCATGATGATGACAAAAGTCTC 59.740 42.308 0.00 0.00 0.00 3.36
729 1547 6.185511 ACCATGATGATGACAAAAGTCTCAT 58.814 36.000 0.00 8.98 0.00 2.90
731 1549 6.495706 CATGATGATGACAAAAGTCTCATGG 58.504 40.000 13.43 0.00 36.63 3.66
732 1550 5.563592 TGATGATGACAAAAGTCTCATGGT 58.436 37.500 12.13 0.00 0.00 3.55
735 1553 4.452114 TGATGACAAAAGTCTCATGGTTCG 59.548 41.667 0.00 0.00 0.00 3.95
736 1554 2.548057 TGACAAAAGTCTCATGGTTCGC 59.452 45.455 0.00 0.00 0.00 4.70
738 1556 2.808543 ACAAAAGTCTCATGGTTCGCTC 59.191 45.455 0.00 0.00 0.00 5.03
743 1561 5.791336 AAGTCTCATGGTTCGCTCATATA 57.209 39.130 0.00 0.00 0.00 0.86
745 1563 7.468141 AAGTCTCATGGTTCGCTCATATATA 57.532 36.000 0.00 0.00 0.00 0.86
754 1572 8.997621 TGGTTCGCTCATATATAGTTATTTCC 57.002 34.615 0.00 0.00 0.00 3.13
758 1576 9.569167 TTCGCTCATATATAGTTATTTCCTTCG 57.431 33.333 0.00 0.00 0.00 3.79
759 1577 8.737175 TCGCTCATATATAGTTATTTCCTTCGT 58.263 33.333 0.00 0.00 0.00 3.85
760 1578 8.799091 CGCTCATATATAGTTATTTCCTTCGTG 58.201 37.037 0.00 0.00 0.00 4.35
761 1579 9.640963 GCTCATATATAGTTATTTCCTTCGTGT 57.359 33.333 0.00 0.00 0.00 4.49
766 1584 8.888579 ATATAGTTATTTCCTTCGTGTTCCAG 57.111 34.615 0.00 0.00 0.00 3.86
767 1585 4.969484 AGTTATTTCCTTCGTGTTCCAGT 58.031 39.130 0.00 0.00 0.00 4.00
768 1586 6.105397 AGTTATTTCCTTCGTGTTCCAGTA 57.895 37.500 0.00 0.00 0.00 2.74
769 1587 6.708285 AGTTATTTCCTTCGTGTTCCAGTAT 58.292 36.000 0.00 0.00 0.00 2.12
770 1588 7.166167 AGTTATTTCCTTCGTGTTCCAGTATT 58.834 34.615 0.00 0.00 0.00 1.89
771 1589 5.880054 ATTTCCTTCGTGTTCCAGTATTG 57.120 39.130 0.00 0.00 0.00 1.90
772 1590 3.328382 TCCTTCGTGTTCCAGTATTGG 57.672 47.619 0.00 0.00 46.49 3.16
773 1591 2.635915 TCCTTCGTGTTCCAGTATTGGT 59.364 45.455 3.93 0.00 45.26 3.67
774 1592 3.071892 TCCTTCGTGTTCCAGTATTGGTT 59.928 43.478 3.93 0.00 45.26 3.67
775 1593 4.283978 TCCTTCGTGTTCCAGTATTGGTTA 59.716 41.667 3.93 0.00 45.26 2.85
776 1594 4.390909 CCTTCGTGTTCCAGTATTGGTTAC 59.609 45.833 3.93 4.99 45.26 2.50
777 1595 4.603989 TCGTGTTCCAGTATTGGTTACA 57.396 40.909 3.93 7.40 45.26 2.41
778 1596 5.155278 TCGTGTTCCAGTATTGGTTACAT 57.845 39.130 14.47 0.00 45.26 2.29
779 1597 5.172934 TCGTGTTCCAGTATTGGTTACATC 58.827 41.667 14.47 9.54 45.26 3.06
780 1598 5.046878 TCGTGTTCCAGTATTGGTTACATCT 60.047 40.000 14.47 0.00 45.26 2.90
781 1599 5.063438 CGTGTTCCAGTATTGGTTACATCTG 59.937 44.000 14.47 7.47 45.26 2.90
782 1600 5.938125 GTGTTCCAGTATTGGTTACATCTGT 59.062 40.000 14.47 0.00 45.26 3.41
783 1601 6.430000 GTGTTCCAGTATTGGTTACATCTGTT 59.570 38.462 14.47 0.00 45.26 3.16
784 1602 6.653320 TGTTCCAGTATTGGTTACATCTGTTC 59.347 38.462 3.93 0.00 45.26 3.18
785 1603 6.367374 TCCAGTATTGGTTACATCTGTTCA 57.633 37.500 3.93 0.00 45.26 3.18
786 1604 6.957631 TCCAGTATTGGTTACATCTGTTCAT 58.042 36.000 3.93 0.00 45.26 2.57
787 1605 7.402054 TCCAGTATTGGTTACATCTGTTCATT 58.598 34.615 3.93 0.00 45.26 2.57
788 1606 7.552687 TCCAGTATTGGTTACATCTGTTCATTC 59.447 37.037 3.93 0.00 45.26 2.67
789 1607 7.201732 CCAGTATTGGTTACATCTGTTCATTCC 60.202 40.741 0.00 0.00 39.79 3.01
790 1608 6.828785 AGTATTGGTTACATCTGTTCATTCCC 59.171 38.462 0.00 0.00 32.87 3.97
791 1609 4.927267 TGGTTACATCTGTTCATTCCCT 57.073 40.909 0.00 0.00 0.00 4.20
792 1610 5.255397 TGGTTACATCTGTTCATTCCCTT 57.745 39.130 0.00 0.00 0.00 3.95
793 1611 5.253330 TGGTTACATCTGTTCATTCCCTTC 58.747 41.667 0.00 0.00 0.00 3.46
794 1612 4.640647 GGTTACATCTGTTCATTCCCTTCC 59.359 45.833 0.00 0.00 0.00 3.46
795 1613 5.501156 GTTACATCTGTTCATTCCCTTCCT 58.499 41.667 0.00 0.00 0.00 3.36
796 1614 4.664688 ACATCTGTTCATTCCCTTCCTT 57.335 40.909 0.00 0.00 0.00 3.36
797 1615 5.003096 ACATCTGTTCATTCCCTTCCTTT 57.997 39.130 0.00 0.00 0.00 3.11
798 1616 4.768968 ACATCTGTTCATTCCCTTCCTTTG 59.231 41.667 0.00 0.00 0.00 2.77
799 1617 4.453480 TCTGTTCATTCCCTTCCTTTGT 57.547 40.909 0.00 0.00 0.00 2.83
800 1618 4.398319 TCTGTTCATTCCCTTCCTTTGTC 58.602 43.478 0.00 0.00 0.00 3.18
801 1619 3.146066 TGTTCATTCCCTTCCTTTGTCG 58.854 45.455 0.00 0.00 0.00 4.35
802 1620 3.146847 GTTCATTCCCTTCCTTTGTCGT 58.853 45.455 0.00 0.00 0.00 4.34
803 1621 2.778299 TCATTCCCTTCCTTTGTCGTG 58.222 47.619 0.00 0.00 0.00 4.35
804 1622 2.105821 TCATTCCCTTCCTTTGTCGTGT 59.894 45.455 0.00 0.00 0.00 4.49
805 1623 2.721425 TTCCCTTCCTTTGTCGTGTT 57.279 45.000 0.00 0.00 0.00 3.32
806 1624 1.961793 TCCCTTCCTTTGTCGTGTTG 58.038 50.000 0.00 0.00 0.00 3.33
807 1625 1.210967 TCCCTTCCTTTGTCGTGTTGT 59.789 47.619 0.00 0.00 0.00 3.32
808 1626 1.602377 CCCTTCCTTTGTCGTGTTGTC 59.398 52.381 0.00 0.00 0.00 3.18
809 1627 1.602377 CCTTCCTTTGTCGTGTTGTCC 59.398 52.381 0.00 0.00 0.00 4.02
810 1628 1.602377 CTTCCTTTGTCGTGTTGTCCC 59.398 52.381 0.00 0.00 0.00 4.46
811 1629 0.531090 TCCTTTGTCGTGTTGTCCCG 60.531 55.000 0.00 0.00 0.00 5.14
812 1630 0.812412 CCTTTGTCGTGTTGTCCCGT 60.812 55.000 0.00 0.00 0.00 5.28
813 1631 0.580104 CTTTGTCGTGTTGTCCCGTC 59.420 55.000 0.00 0.00 0.00 4.79
814 1632 0.810823 TTTGTCGTGTTGTCCCGTCC 60.811 55.000 0.00 0.00 0.00 4.79
815 1633 1.957765 TTGTCGTGTTGTCCCGTCCA 61.958 55.000 0.00 0.00 0.00 4.02
816 1634 1.227321 GTCGTGTTGTCCCGTCCAA 60.227 57.895 0.00 0.00 0.00 3.53
817 1635 0.810823 GTCGTGTTGTCCCGTCCAAA 60.811 55.000 0.00 0.00 0.00 3.28
818 1636 0.107800 TCGTGTTGTCCCGTCCAAAA 60.108 50.000 0.00 0.00 0.00 2.44
819 1637 0.028374 CGTGTTGTCCCGTCCAAAAC 59.972 55.000 0.00 0.00 0.00 2.43
820 1638 1.096416 GTGTTGTCCCGTCCAAAACA 58.904 50.000 0.00 0.00 31.61 2.83
821 1639 1.473278 GTGTTGTCCCGTCCAAAACAA 59.527 47.619 0.00 0.00 32.92 2.83
822 1640 1.746220 TGTTGTCCCGTCCAAAACAAG 59.254 47.619 0.00 0.00 32.66 3.16
823 1641 2.018515 GTTGTCCCGTCCAAAACAAGA 58.981 47.619 0.00 0.00 32.66 3.02
824 1642 2.421751 TGTCCCGTCCAAAACAAGAA 57.578 45.000 0.00 0.00 0.00 2.52
825 1643 2.294074 TGTCCCGTCCAAAACAAGAAG 58.706 47.619 0.00 0.00 0.00 2.85
826 1644 1.607148 GTCCCGTCCAAAACAAGAAGG 59.393 52.381 0.00 0.00 0.00 3.46
827 1645 1.491332 TCCCGTCCAAAACAAGAAGGA 59.509 47.619 0.00 0.00 33.96 3.36
828 1646 2.092321 TCCCGTCCAAAACAAGAAGGAA 60.092 45.455 0.00 0.00 33.96 3.36
829 1647 2.691011 CCCGTCCAAAACAAGAAGGAAA 59.309 45.455 0.00 0.00 33.96 3.13
830 1648 3.243401 CCCGTCCAAAACAAGAAGGAAAG 60.243 47.826 0.00 0.00 33.96 2.62
831 1649 3.380320 CCGTCCAAAACAAGAAGGAAAGT 59.620 43.478 0.00 0.00 33.96 2.66
832 1650 4.351192 CGTCCAAAACAAGAAGGAAAGTG 58.649 43.478 0.00 0.00 0.00 3.16
833 1651 4.682787 GTCCAAAACAAGAAGGAAAGTGG 58.317 43.478 0.00 0.00 0.00 4.00
834 1652 3.132111 TCCAAAACAAGAAGGAAAGTGGC 59.868 43.478 0.00 0.00 0.00 5.01
835 1653 3.118811 CCAAAACAAGAAGGAAAGTGGCA 60.119 43.478 0.00 0.00 0.00 4.92
836 1654 3.801114 AAACAAGAAGGAAAGTGGCAC 57.199 42.857 10.29 10.29 0.00 5.01
837 1655 1.692411 ACAAGAAGGAAAGTGGCACC 58.308 50.000 15.27 0.00 0.00 5.01
838 1656 1.064017 ACAAGAAGGAAAGTGGCACCA 60.064 47.619 15.27 0.00 0.00 4.17
839 1657 1.338020 CAAGAAGGAAAGTGGCACCAC 59.662 52.381 15.27 12.02 46.50 4.16
849 1667 1.816074 GTGGCACCACCTAAAATCGA 58.184 50.000 6.29 0.00 40.79 3.59
850 1668 2.365582 GTGGCACCACCTAAAATCGAT 58.634 47.619 6.29 0.00 40.79 3.59
851 1669 2.752903 GTGGCACCACCTAAAATCGATT 59.247 45.455 6.29 4.39 40.79 3.34
852 1670 3.942748 GTGGCACCACCTAAAATCGATTA 59.057 43.478 11.83 0.00 40.79 1.75
854 1672 3.003378 GGCACCACCTAAAATCGATTAGC 59.997 47.826 11.83 4.83 32.62 3.09
858 1676 6.625081 GCACCACCTAAAATCGATTAGCTTTT 60.625 38.462 11.83 5.01 33.38 2.27
862 1680 8.836413 CCACCTAAAATCGATTAGCTTTTGATA 58.164 33.333 11.83 0.00 31.51 2.15
863 1681 9.651718 CACCTAAAATCGATTAGCTTTTGATAC 57.348 33.333 11.83 0.00 31.51 2.24
897 1715 8.950208 ACTTAATCTTTTCCACTATAGCACTC 57.050 34.615 0.00 0.00 0.00 3.51
898 1716 8.540388 ACTTAATCTTTTCCACTATAGCACTCA 58.460 33.333 0.00 0.00 0.00 3.41
899 1717 8.718102 TTAATCTTTTCCACTATAGCACTCAC 57.282 34.615 0.00 0.00 0.00 3.51
900 1718 5.738619 TCTTTTCCACTATAGCACTCACA 57.261 39.130 0.00 0.00 0.00 3.58
901 1719 5.479306 TCTTTTCCACTATAGCACTCACAC 58.521 41.667 0.00 0.00 0.00 3.82
902 1720 3.887621 TTCCACTATAGCACTCACACC 57.112 47.619 0.00 0.00 0.00 4.16
904 1722 4.245251 TCCACTATAGCACTCACACCTA 57.755 45.455 0.00 0.00 0.00 3.08
905 1723 3.952323 TCCACTATAGCACTCACACCTAC 59.048 47.826 0.00 0.00 0.00 3.18
906 1724 3.068307 CCACTATAGCACTCACACCTACC 59.932 52.174 0.00 0.00 0.00 3.18
907 1725 3.954904 CACTATAGCACTCACACCTACCT 59.045 47.826 0.00 0.00 0.00 3.08
908 1726 5.131067 CACTATAGCACTCACACCTACCTA 58.869 45.833 0.00 0.00 0.00 3.08
909 1727 5.008811 CACTATAGCACTCACACCTACCTAC 59.991 48.000 0.00 0.00 0.00 3.18
910 1728 2.606751 AGCACTCACACCTACCTACT 57.393 50.000 0.00 0.00 0.00 2.57
911 1729 2.448453 AGCACTCACACCTACCTACTC 58.552 52.381 0.00 0.00 0.00 2.59
913 1731 2.826725 GCACTCACACCTACCTACTCTT 59.173 50.000 0.00 0.00 0.00 2.85
914 1732 3.367498 GCACTCACACCTACCTACTCTTG 60.367 52.174 0.00 0.00 0.00 3.02
915 1733 3.193691 CACTCACACCTACCTACTCTTGG 59.806 52.174 0.00 0.00 0.00 3.61
916 1734 2.761208 CTCACACCTACCTACTCTTGGG 59.239 54.545 0.00 0.00 0.00 4.12
917 1735 2.111255 TCACACCTACCTACTCTTGGGT 59.889 50.000 0.00 0.00 39.40 4.51
926 1744 7.893124 CTACCTACTCTTGGGTAGTAAATGA 57.107 40.000 10.07 0.00 45.83 2.57
928 1746 9.584008 CTACCTACTCTTGGGTAGTAAATGATA 57.416 37.037 10.07 0.00 45.83 2.15
949 1767 7.118723 TGATATATAAGATGCCATTGTTCCCC 58.881 38.462 0.00 0.00 0.00 4.81
951 1769 6.718593 ATATAAGATGCCATTGTTCCCCTA 57.281 37.500 0.00 0.00 0.00 3.53
952 1770 2.736670 AGATGCCATTGTTCCCCTAC 57.263 50.000 0.00 0.00 0.00 3.18
953 1771 1.922447 AGATGCCATTGTTCCCCTACA 59.078 47.619 0.00 0.00 0.00 2.74
954 1772 2.311542 AGATGCCATTGTTCCCCTACAA 59.688 45.455 0.00 0.00 41.81 2.41
956 1774 2.733956 TGCCATTGTTCCCCTACAATC 58.266 47.619 0.00 0.00 44.64 2.67
957 1775 2.042297 TGCCATTGTTCCCCTACAATCA 59.958 45.455 0.00 0.00 44.64 2.57
958 1776 2.427095 GCCATTGTTCCCCTACAATCAC 59.573 50.000 0.00 0.00 44.64 3.06
959 1777 3.696045 CCATTGTTCCCCTACAATCACA 58.304 45.455 0.00 0.00 44.64 3.58
960 1778 4.085733 CCATTGTTCCCCTACAATCACAA 58.914 43.478 0.00 0.00 44.64 3.33
961 1779 4.526262 CCATTGTTCCCCTACAATCACAAA 59.474 41.667 0.00 0.00 44.64 2.83
962 1780 5.011533 CCATTGTTCCCCTACAATCACAAAA 59.988 40.000 0.00 0.00 44.64 2.44
965 1783 8.477256 CATTGTTCCCCTACAATCACAAAATAT 58.523 33.333 0.00 0.00 44.64 1.28
966 1784 7.639113 TGTTCCCCTACAATCACAAAATATC 57.361 36.000 0.00 0.00 0.00 1.63
967 1785 7.410174 TGTTCCCCTACAATCACAAAATATCT 58.590 34.615 0.00 0.00 0.00 1.98
968 1786 7.556275 TGTTCCCCTACAATCACAAAATATCTC 59.444 37.037 0.00 0.00 0.00 2.75
969 1787 6.601332 TCCCCTACAATCACAAAATATCTCC 58.399 40.000 0.00 0.00 0.00 3.71
970 1788 6.389869 TCCCCTACAATCACAAAATATCTCCT 59.610 38.462 0.00 0.00 0.00 3.69
971 1789 7.062957 CCCCTACAATCACAAAATATCTCCTT 58.937 38.462 0.00 0.00 0.00 3.36
972 1790 7.229506 CCCCTACAATCACAAAATATCTCCTTC 59.770 40.741 0.00 0.00 0.00 3.46
973 1791 7.995488 CCCTACAATCACAAAATATCTCCTTCT 59.005 37.037 0.00 0.00 0.00 2.85
974 1792 9.050601 CCTACAATCACAAAATATCTCCTTCTC 57.949 37.037 0.00 0.00 0.00 2.87
975 1793 7.872113 ACAATCACAAAATATCTCCTTCTCC 57.128 36.000 0.00 0.00 0.00 3.71
977 1795 7.772757 ACAATCACAAAATATCTCCTTCTCCTC 59.227 37.037 0.00 0.00 0.00 3.71
978 1796 6.240549 TCACAAAATATCTCCTTCTCCTCC 57.759 41.667 0.00 0.00 0.00 4.30
980 1798 5.131809 CACAAAATATCTCCTTCTCCTCCCT 59.868 44.000 0.00 0.00 0.00 4.20
981 1799 5.368230 ACAAAATATCTCCTTCTCCTCCCTC 59.632 44.000 0.00 0.00 0.00 4.30
982 1800 5.432464 AAATATCTCCTTCTCCTCCCTCT 57.568 43.478 0.00 0.00 0.00 3.69
984 1802 0.930726 TCTCCTTCTCCTCCCTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
985 1803 0.633921 CTCCTTCTCCTCCCTCTCCA 59.366 60.000 0.00 0.00 0.00 3.86
988 1806 1.007721 CCTTCTCCTCCCTCTCCAAGA 59.992 57.143 0.00 0.00 0.00 3.02
990 1808 1.084866 TCTCCTCCCTCTCCAAGACA 58.915 55.000 0.00 0.00 0.00 3.41
991 1809 1.190643 CTCCTCCCTCTCCAAGACAC 58.809 60.000 0.00 0.00 0.00 3.67
993 1811 1.079490 TCCTCCCTCTCCAAGACACAT 59.921 52.381 0.00 0.00 0.00 3.21
994 1812 1.912043 CCTCCCTCTCCAAGACACATT 59.088 52.381 0.00 0.00 0.00 2.71
995 1813 2.093235 CCTCCCTCTCCAAGACACATTC 60.093 54.545 0.00 0.00 0.00 2.67
996 1814 2.568956 CTCCCTCTCCAAGACACATTCA 59.431 50.000 0.00 0.00 0.00 2.57
997 1815 2.303022 TCCCTCTCCAAGACACATTCAC 59.697 50.000 0.00 0.00 0.00 3.18
999 1817 3.496692 CCCTCTCCAAGACACATTCACAA 60.497 47.826 0.00 0.00 0.00 3.33
1001 1819 4.763793 CCTCTCCAAGACACATTCACAAAT 59.236 41.667 0.00 0.00 0.00 2.32
1002 1820 5.335426 CCTCTCCAAGACACATTCACAAATG 60.335 44.000 0.00 0.00 46.42 2.32
1003 1821 4.022935 TCTCCAAGACACATTCACAAATGC 60.023 41.667 0.00 0.00 45.16 3.56
1005 1823 3.243805 CCAAGACACATTCACAAATGCCA 60.244 43.478 0.00 0.00 45.16 4.92
1007 1825 4.445452 AGACACATTCACAAATGCCATC 57.555 40.909 0.00 0.00 45.16 3.51
1008 1826 3.119743 AGACACATTCACAAATGCCATCG 60.120 43.478 0.00 0.00 45.16 3.84
1009 1827 1.921887 CACATTCACAAATGCCATCGC 59.078 47.619 0.00 0.00 45.16 4.58
1020 1838 2.359354 CCATCGCACCAACGGGAA 60.359 61.111 0.00 0.00 38.05 3.97
1022 1840 1.963855 CATCGCACCAACGGGAACA 60.964 57.895 0.00 0.00 38.05 3.18
1024 1842 0.250793 ATCGCACCAACGGGAACATA 59.749 50.000 0.00 0.00 38.05 2.29
1027 1845 1.742411 CGCACCAACGGGAACATAGAT 60.742 52.381 0.00 0.00 38.05 1.98
1029 1847 2.420129 GCACCAACGGGAACATAGATCT 60.420 50.000 0.00 0.00 38.05 2.75
1030 1848 3.181469 GCACCAACGGGAACATAGATCTA 60.181 47.826 4.57 4.57 38.05 1.98
1045 2167 6.841229 ACATAGATCTAGTGATGAACCCAAGA 59.159 38.462 8.70 0.00 32.19 3.02
1050 2172 7.680366 GATCTAGTGATGAACCCAAGATTGGC 61.680 46.154 6.06 0.00 38.86 4.52
1062 2184 1.204146 AGATTGGCGATGGTAGTGGT 58.796 50.000 0.00 0.00 0.00 4.16
1067 2189 0.597637 GGCGATGGTAGTGGTGATCG 60.598 60.000 0.00 0.00 40.50 3.69
1188 2310 7.124052 ACCAAAAGAATGGAGATGAAGATGAT 58.876 34.615 0.00 0.00 43.54 2.45
1191 2313 4.653868 AGAATGGAGATGAAGATGATGCC 58.346 43.478 0.00 0.00 0.00 4.40
1238 2360 2.225779 TGGATGGGAAGGAGACTGGTAA 60.226 50.000 0.00 0.00 42.68 2.85
1259 2381 1.077212 CATCCAAGAGCCCCACCAG 60.077 63.158 0.00 0.00 0.00 4.00
1270 2392 1.553690 CCCCACCAGATCGTTGGAGT 61.554 60.000 7.95 0.00 40.87 3.85
1277 2399 1.139058 CAGATCGTTGGAGTTAGGGGG 59.861 57.143 0.00 0.00 0.00 5.40
1297 2419 2.973945 GTGATACCTCACCTCACCAAC 58.026 52.381 0.00 0.00 45.06 3.77
1313 2435 0.331278 CAACAGGGGCAACTATGGGA 59.669 55.000 0.00 0.00 0.00 4.37
1466 2588 0.930726 AAAAAGGACACCCCACTCCA 59.069 50.000 0.00 0.00 37.41 3.86
1534 2656 2.352805 CAAGTGGTGAGCCCCTCC 59.647 66.667 0.00 0.00 0.00 4.30
1539 2661 1.852157 TGGTGAGCCCCTCCATGTT 60.852 57.895 0.00 0.00 33.79 2.71
1573 2695 0.253044 TGGCATTGCACTCTCTACCC 59.747 55.000 11.39 0.00 0.00 3.69
1577 2699 0.978146 ATTGCACTCTCTACCCGCCT 60.978 55.000 0.00 0.00 0.00 5.52
1602 2724 3.251004 AGATCTTTCACGAAGTTTGTGCC 59.749 43.478 17.19 3.77 41.61 5.01
1657 2779 1.296392 TGGCCTGACCAGACAATCG 59.704 57.895 3.32 0.00 46.36 3.34
1686 2808 3.017442 GGACAACTTTAAGGCCATCTCC 58.983 50.000 5.01 0.00 0.00 3.71
1769 2891 0.616395 TGGGCCAGTGATTACCTCGA 60.616 55.000 0.00 0.00 0.00 4.04
1834 2956 1.442769 CACCATCCAAGGAGTTGTCG 58.557 55.000 0.00 0.00 30.95 4.35
1959 3082 2.116238 GTGATGCCTAGTTCCTGGGTA 58.884 52.381 0.00 0.00 34.44 3.69
2132 3255 2.634982 TTCTTGCAAAAGCGCATAGG 57.365 45.000 11.47 0.00 42.62 2.57
2259 3597 2.372690 CGACTTTGAGACCGTGCCG 61.373 63.158 0.00 0.00 0.00 5.69
2283 3621 3.072184 AGAACCTTGTGCATTCTGAGAGT 59.928 43.478 0.00 0.00 31.47 3.24
2400 3738 4.626604 CCATTTTCGACCAATTGGACAATG 59.373 41.667 31.22 24.88 38.94 2.82
2459 3797 5.320549 ACTTCATCTGCATTGAAACCATC 57.679 39.130 11.90 0.00 32.98 3.51
2667 4065 9.995003 TTCTGGTTTGCTTAATTTACATCAATT 57.005 25.926 0.00 0.00 0.00 2.32
2668 4066 9.638239 TCTGGTTTGCTTAATTTACATCAATTC 57.362 29.630 0.00 0.00 0.00 2.17
2669 4067 8.459521 TGGTTTGCTTAATTTACATCAATTCG 57.540 30.769 0.00 0.00 0.00 3.34
2670 4068 8.300286 TGGTTTGCTTAATTTACATCAATTCGA 58.700 29.630 0.00 0.00 0.00 3.71
2671 4069 9.301153 GGTTTGCTTAATTTACATCAATTCGAT 57.699 29.630 0.00 0.00 33.27 3.59
2721 4119 5.755409 TTTTAGGTGACTGAGGCTAATCA 57.245 39.130 0.00 0.00 43.88 2.57
2722 4120 5.755409 TTTAGGTGACTGAGGCTAATCAA 57.245 39.130 0.00 0.00 43.88 2.57
2723 4121 5.957771 TTAGGTGACTGAGGCTAATCAAT 57.042 39.130 0.00 0.00 43.88 2.57
2724 4122 4.851639 AGGTGACTGAGGCTAATCAATT 57.148 40.909 0.00 0.00 41.13 2.32
2725 4123 4.775236 AGGTGACTGAGGCTAATCAATTC 58.225 43.478 0.00 0.00 41.13 2.17
2726 4124 3.557595 GGTGACTGAGGCTAATCAATTCG 59.442 47.826 0.00 0.00 0.00 3.34
2727 4125 4.433615 GTGACTGAGGCTAATCAATTCGA 58.566 43.478 0.00 0.00 0.00 3.71
2728 4126 5.053145 GTGACTGAGGCTAATCAATTCGAT 58.947 41.667 0.00 0.00 35.12 3.59
2729 4127 5.176590 GTGACTGAGGCTAATCAATTCGATC 59.823 44.000 0.00 0.00 31.11 3.69
2730 4128 5.163416 TGACTGAGGCTAATCAATTCGATCA 60.163 40.000 0.00 0.00 31.11 2.92
2731 4129 5.674525 ACTGAGGCTAATCAATTCGATCAA 58.325 37.500 0.00 0.00 31.11 2.57
2732 4130 6.294473 ACTGAGGCTAATCAATTCGATCAAT 58.706 36.000 0.00 0.00 31.11 2.57
2733 4131 6.769822 ACTGAGGCTAATCAATTCGATCAATT 59.230 34.615 0.00 0.00 34.79 2.32
2734 4132 7.933577 ACTGAGGCTAATCAATTCGATCAATTA 59.066 33.333 0.00 0.00 32.48 1.40
2735 4133 8.315391 TGAGGCTAATCAATTCGATCAATTAG 57.685 34.615 10.59 10.59 32.48 1.73
2736 4134 8.150296 TGAGGCTAATCAATTCGATCAATTAGA 58.850 33.333 15.74 0.91 32.48 2.10
2737 4135 8.908786 AGGCTAATCAATTCGATCAATTAGAA 57.091 30.769 15.74 0.00 32.48 2.10
2738 4136 9.512588 AGGCTAATCAATTCGATCAATTAGAAT 57.487 29.630 15.74 0.00 32.48 2.40
2817 4221 9.813826 CCATAGTATAATTCCAATCCCTCTTTT 57.186 33.333 0.00 0.00 0.00 2.27
2845 4249 0.729116 CTATGCGCACAACCTTGGAG 59.271 55.000 14.90 0.00 0.00 3.86
2941 4375 0.899720 CAGTTGGAGGTAGGCGGTAA 59.100 55.000 0.00 0.00 0.00 2.85
2965 4399 0.905337 AGTCCTCCCCGTTCCTGAAG 60.905 60.000 0.00 0.00 0.00 3.02
3039 4489 2.808543 GTGAAGTCCAGATTCGCTGTTT 59.191 45.455 0.00 0.00 43.33 2.83
3040 4490 3.994392 GTGAAGTCCAGATTCGCTGTTTA 59.006 43.478 0.00 0.00 43.33 2.01
3082 4536 5.179742 GGAATTCTAGATGAGATTGCAGCAG 59.820 44.000 5.23 0.00 32.88 4.24
3117 4579 4.451150 GGCGCCCGTCATCACAGA 62.451 66.667 18.11 0.00 0.00 3.41
3123 4585 1.452110 CCCGTCATCACAGATTGCAA 58.548 50.000 0.00 0.00 0.00 4.08
3124 4586 1.131126 CCCGTCATCACAGATTGCAAC 59.869 52.381 0.00 0.00 0.00 4.17
3125 4587 2.079158 CCGTCATCACAGATTGCAACT 58.921 47.619 0.00 0.00 0.00 3.16
3137 4599 6.428159 CACAGATTGCAACTACTAGGTTTTCT 59.572 38.462 0.00 0.00 0.00 2.52
3170 4632 9.383519 CTTTAGCCAAGTCTAAAATCTGTGATA 57.616 33.333 0.00 0.00 37.88 2.15
3232 4797 4.979204 GCAATTTGCAGCAGAGCA 57.021 50.000 16.35 0.00 44.26 4.26
3233 4798 2.442084 GCAATTTGCAGCAGAGCAC 58.558 52.632 16.35 0.00 45.61 4.40
3234 4799 1.342082 GCAATTTGCAGCAGAGCACG 61.342 55.000 16.35 0.00 45.61 5.34
3235 4800 1.080974 AATTTGCAGCAGAGCACGC 60.081 52.632 0.00 0.00 45.61 5.34
3243 4825 1.070445 GCAGAGCACGCAGGGATAT 59.930 57.895 0.00 0.00 0.00 1.63
3277 4859 1.788258 CCATCAGCCGTACTGCATAG 58.212 55.000 12.05 1.47 46.76 2.23
3284 4866 3.492383 CAGCCGTACTGCATAGAGATTTG 59.508 47.826 12.05 0.00 40.19 2.32
3285 4867 2.802816 GCCGTACTGCATAGAGATTTGG 59.197 50.000 4.19 0.00 0.00 3.28
3286 4868 3.492656 GCCGTACTGCATAGAGATTTGGA 60.493 47.826 4.19 0.00 0.00 3.53
3287 4869 4.800914 GCCGTACTGCATAGAGATTTGGAT 60.801 45.833 4.19 0.00 0.00 3.41
3288 4870 4.926238 CCGTACTGCATAGAGATTTGGATC 59.074 45.833 0.00 0.00 0.00 3.36
3289 4871 5.509670 CCGTACTGCATAGAGATTTGGATCA 60.510 44.000 0.00 0.00 34.60 2.92
3290 4872 5.632764 CGTACTGCATAGAGATTTGGATCAG 59.367 44.000 0.00 0.00 34.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.069781 TGTTCTCGGAAATCCAATTTGGTTT 59.930 36.000 14.98 13.66 39.03 3.27
99 104 3.831883 CGGCTACTAGCGGGTGTA 58.168 61.111 7.57 0.00 43.62 2.90
129 134 0.893727 ACGTCCTTTTCCATGTGGGC 60.894 55.000 0.00 0.00 36.21 5.36
136 141 0.542333 TGTGGTGACGTCCTTTTCCA 59.458 50.000 14.12 10.71 0.00 3.53
193 198 2.359376 TCTTCAAGGAGGATTCCCCA 57.641 50.000 11.44 0.00 45.24 4.96
359 747 5.069914 TGAGTCACTAGTGCAGAAAAACCTA 59.930 40.000 18.45 0.00 0.00 3.08
360 748 4.141711 TGAGTCACTAGTGCAGAAAAACCT 60.142 41.667 18.45 2.47 0.00 3.50
368 756 4.216472 TGTCTAAGTGAGTCACTAGTGCAG 59.784 45.833 25.71 16.40 44.62 4.41
395 1212 7.676683 AGCTAGGATCCTAAAACACATAGAA 57.323 36.000 21.93 0.00 0.00 2.10
469 1286 3.056536 TCAATGTATGCTCGCTAGGATCC 60.057 47.826 2.48 2.48 35.16 3.36
479 1296 3.118629 TGTGGAGTCCTCAATGTATGCTC 60.119 47.826 11.52 0.00 0.00 4.26
552 1370 5.128991 GGTATTTGCCAACTAGACTCCTACT 59.871 44.000 0.00 0.00 0.00 2.57
561 1379 2.423538 GTGCCAGGTATTTGCCAACTAG 59.576 50.000 0.00 0.00 0.00 2.57
566 1384 1.935799 ATTGTGCCAGGTATTTGCCA 58.064 45.000 0.00 0.00 0.00 4.92
567 1385 2.223479 CGTATTGTGCCAGGTATTTGCC 60.223 50.000 0.00 0.00 0.00 4.52
568 1386 2.680841 TCGTATTGTGCCAGGTATTTGC 59.319 45.455 0.00 0.00 0.00 3.68
569 1387 4.955925 TTCGTATTGTGCCAGGTATTTG 57.044 40.909 0.00 0.00 0.00 2.32
570 1388 6.238648 GCTAATTCGTATTGTGCCAGGTATTT 60.239 38.462 0.00 0.00 0.00 1.40
571 1389 5.238650 GCTAATTCGTATTGTGCCAGGTATT 59.761 40.000 0.00 0.00 0.00 1.89
572 1390 4.755123 GCTAATTCGTATTGTGCCAGGTAT 59.245 41.667 0.00 0.00 0.00 2.73
573 1391 4.124238 GCTAATTCGTATTGTGCCAGGTA 58.876 43.478 0.00 0.00 0.00 3.08
574 1392 2.943033 GCTAATTCGTATTGTGCCAGGT 59.057 45.455 0.00 0.00 0.00 4.00
575 1393 2.942376 TGCTAATTCGTATTGTGCCAGG 59.058 45.455 10.33 0.00 0.00 4.45
576 1394 4.035558 ACATGCTAATTCGTATTGTGCCAG 59.964 41.667 0.00 6.84 0.00 4.85
577 1395 3.944650 ACATGCTAATTCGTATTGTGCCA 59.055 39.130 0.00 0.00 0.00 4.92
578 1396 4.035091 TGACATGCTAATTCGTATTGTGCC 59.965 41.667 0.00 0.11 0.00 5.01
579 1397 5.155509 TGACATGCTAATTCGTATTGTGC 57.844 39.130 0.00 3.14 0.00 4.57
580 1398 8.334632 TGTATTGACATGCTAATTCGTATTGTG 58.665 33.333 0.00 0.00 0.00 3.33
581 1399 8.432110 TGTATTGACATGCTAATTCGTATTGT 57.568 30.769 0.00 0.00 0.00 2.71
582 1400 9.373750 CTTGTATTGACATGCTAATTCGTATTG 57.626 33.333 0.00 0.00 34.86 1.90
583 1401 9.325198 TCTTGTATTGACATGCTAATTCGTATT 57.675 29.630 0.00 0.00 34.86 1.89
584 1402 8.887036 TCTTGTATTGACATGCTAATTCGTAT 57.113 30.769 0.00 0.00 34.86 3.06
585 1403 8.710835 TTCTTGTATTGACATGCTAATTCGTA 57.289 30.769 0.00 0.00 34.86 3.43
586 1404 7.609760 TTCTTGTATTGACATGCTAATTCGT 57.390 32.000 0.00 0.00 34.86 3.85
587 1405 7.162546 CGTTTCTTGTATTGACATGCTAATTCG 59.837 37.037 0.00 0.00 34.86 3.34
588 1406 7.962918 ACGTTTCTTGTATTGACATGCTAATTC 59.037 33.333 0.00 0.00 34.86 2.17
589 1407 7.816640 ACGTTTCTTGTATTGACATGCTAATT 58.183 30.769 0.00 0.00 34.86 1.40
590 1408 7.377766 ACGTTTCTTGTATTGACATGCTAAT 57.622 32.000 0.00 0.00 34.86 1.73
591 1409 6.795098 ACGTTTCTTGTATTGACATGCTAA 57.205 33.333 0.00 0.00 34.86 3.09
592 1410 6.203915 ACAACGTTTCTTGTATTGACATGCTA 59.796 34.615 0.00 0.00 34.86 3.49
593 1411 5.008613 ACAACGTTTCTTGTATTGACATGCT 59.991 36.000 0.00 0.00 34.86 3.79
594 1412 5.212194 ACAACGTTTCTTGTATTGACATGC 58.788 37.500 0.00 0.00 34.86 4.06
595 1413 8.775220 TTTACAACGTTTCTTGTATTGACATG 57.225 30.769 0.00 0.00 36.67 3.21
596 1414 9.959749 AATTTACAACGTTTCTTGTATTGACAT 57.040 25.926 0.00 0.00 36.67 3.06
602 1420 9.349145 GGCAATAATTTACAACGTTTCTTGTAT 57.651 29.630 0.00 0.00 36.67 2.29
603 1421 8.350722 TGGCAATAATTTACAACGTTTCTTGTA 58.649 29.630 0.00 0.00 35.87 2.41
604 1422 7.203910 TGGCAATAATTTACAACGTTTCTTGT 58.796 30.769 0.00 0.00 38.03 3.16
605 1423 7.630470 TGGCAATAATTTACAACGTTTCTTG 57.370 32.000 0.00 0.00 0.00 3.02
606 1424 8.649973 TTTGGCAATAATTTACAACGTTTCTT 57.350 26.923 0.00 0.00 0.00 2.52
607 1425 8.649973 TTTTGGCAATAATTTACAACGTTTCT 57.350 26.923 0.00 0.00 0.00 2.52
608 1426 8.756864 TCTTTTGGCAATAATTTACAACGTTTC 58.243 29.630 0.00 0.00 0.00 2.78
609 1427 8.649973 TCTTTTGGCAATAATTTACAACGTTT 57.350 26.923 0.00 0.00 0.00 3.60
610 1428 8.825667 ATCTTTTGGCAATAATTTACAACGTT 57.174 26.923 0.00 0.00 0.00 3.99
611 1429 9.915629 TTATCTTTTGGCAATAATTTACAACGT 57.084 25.926 0.00 0.00 0.00 3.99
639 1457 9.378551 TGCATCAGTCTACGAGTTTTAATTTAT 57.621 29.630 0.00 0.00 0.00 1.40
640 1458 8.766000 TGCATCAGTCTACGAGTTTTAATTTA 57.234 30.769 0.00 0.00 0.00 1.40
641 1459 7.667043 TGCATCAGTCTACGAGTTTTAATTT 57.333 32.000 0.00 0.00 0.00 1.82
642 1460 7.387948 ACTTGCATCAGTCTACGAGTTTTAATT 59.612 33.333 0.00 0.00 0.00 1.40
643 1461 6.874134 ACTTGCATCAGTCTACGAGTTTTAAT 59.126 34.615 0.00 0.00 0.00 1.40
644 1462 6.145534 CACTTGCATCAGTCTACGAGTTTTAA 59.854 38.462 0.00 0.00 0.00 1.52
645 1463 5.633601 CACTTGCATCAGTCTACGAGTTTTA 59.366 40.000 0.00 0.00 0.00 1.52
646 1464 4.449068 CACTTGCATCAGTCTACGAGTTTT 59.551 41.667 0.00 0.00 0.00 2.43
647 1465 3.990469 CACTTGCATCAGTCTACGAGTTT 59.010 43.478 0.00 0.00 0.00 2.66
648 1466 3.579709 CACTTGCATCAGTCTACGAGTT 58.420 45.455 0.00 0.00 0.00 3.01
649 1467 2.672478 GCACTTGCATCAGTCTACGAGT 60.672 50.000 0.00 0.00 41.59 4.18
650 1468 1.923204 GCACTTGCATCAGTCTACGAG 59.077 52.381 0.00 0.00 41.59 4.18
651 1469 1.996292 GCACTTGCATCAGTCTACGA 58.004 50.000 0.00 0.00 41.59 3.43
663 1481 1.339055 TGGAGGACTACATGCACTTGC 60.339 52.381 0.00 0.00 42.50 4.01
664 1482 2.768253 TGGAGGACTACATGCACTTG 57.232 50.000 0.00 0.00 0.00 3.16
665 1483 4.307032 AATTGGAGGACTACATGCACTT 57.693 40.909 0.00 0.00 0.00 3.16
666 1484 4.307032 AAATTGGAGGACTACATGCACT 57.693 40.909 0.00 0.00 0.00 4.40
667 1485 4.737054 CAAAATTGGAGGACTACATGCAC 58.263 43.478 0.00 0.00 0.00 4.57
689 1507 2.452600 TGGTAGGGGAAATGATTGCC 57.547 50.000 0.00 0.00 45.73 4.52
690 1508 3.565307 TCATGGTAGGGGAAATGATTGC 58.435 45.455 0.00 0.00 0.00 3.56
691 1509 5.387788 TCATCATGGTAGGGGAAATGATTG 58.612 41.667 0.00 0.00 37.60 2.67
692 1510 5.668135 TCATCATGGTAGGGGAAATGATT 57.332 39.130 0.00 0.00 37.60 2.57
693 1511 5.314039 TCATCATCATGGTAGGGGAAATGAT 59.686 40.000 0.00 0.00 39.71 2.45
694 1512 4.664536 TCATCATCATGGTAGGGGAAATGA 59.335 41.667 0.00 0.00 33.80 2.57
695 1513 4.763793 GTCATCATCATGGTAGGGGAAATG 59.236 45.833 0.00 0.00 0.00 2.32
696 1514 4.416513 TGTCATCATCATGGTAGGGGAAAT 59.583 41.667 0.00 0.00 0.00 2.17
697 1515 3.785325 TGTCATCATCATGGTAGGGGAAA 59.215 43.478 0.00 0.00 0.00 3.13
698 1516 3.392730 TGTCATCATCATGGTAGGGGAA 58.607 45.455 0.00 0.00 0.00 3.97
699 1517 3.059051 TGTCATCATCATGGTAGGGGA 57.941 47.619 0.00 0.00 0.00 4.81
700 1518 3.862877 TTGTCATCATCATGGTAGGGG 57.137 47.619 0.00 0.00 0.00 4.79
701 1519 5.195940 ACTTTTGTCATCATCATGGTAGGG 58.804 41.667 0.00 0.00 0.00 3.53
718 1536 2.807967 TGAGCGAACCATGAGACTTTTG 59.192 45.455 0.00 0.00 0.00 2.44
720 1538 2.839486 TGAGCGAACCATGAGACTTT 57.161 45.000 0.00 0.00 0.00 2.66
721 1539 4.679373 ATATGAGCGAACCATGAGACTT 57.321 40.909 0.00 0.00 0.00 3.01
722 1540 5.991933 ATATATGAGCGAACCATGAGACT 57.008 39.130 0.00 0.00 0.00 3.24
723 1541 6.857956 ACTATATATGAGCGAACCATGAGAC 58.142 40.000 0.00 0.00 0.00 3.36
729 1547 8.812972 AGGAAATAACTATATATGAGCGAACCA 58.187 33.333 0.00 0.00 0.00 3.67
732 1550 9.569167 CGAAGGAAATAACTATATATGAGCGAA 57.431 33.333 0.00 0.00 0.00 4.70
735 1553 9.640963 ACACGAAGGAAATAACTATATATGAGC 57.359 33.333 0.00 0.00 0.00 4.26
743 1561 6.708285 ACTGGAACACGAAGGAAATAACTAT 58.292 36.000 0.00 0.00 0.00 2.12
745 1563 4.969484 ACTGGAACACGAAGGAAATAACT 58.031 39.130 0.00 0.00 0.00 2.24
752 1570 2.635915 ACCAATACTGGAACACGAAGGA 59.364 45.455 0.00 0.00 46.92 3.36
753 1571 3.053831 ACCAATACTGGAACACGAAGG 57.946 47.619 0.00 0.00 46.92 3.46
754 1572 4.992319 TGTAACCAATACTGGAACACGAAG 59.008 41.667 0.00 0.00 46.92 3.79
757 1575 5.063438 CAGATGTAACCAATACTGGAACACG 59.937 44.000 0.00 0.00 46.92 4.49
758 1576 5.938125 ACAGATGTAACCAATACTGGAACAC 59.062 40.000 0.00 0.00 46.92 3.32
759 1577 6.121776 ACAGATGTAACCAATACTGGAACA 57.878 37.500 0.00 1.13 46.92 3.18
760 1578 6.653320 TGAACAGATGTAACCAATACTGGAAC 59.347 38.462 0.00 0.00 46.92 3.62
761 1579 6.774673 TGAACAGATGTAACCAATACTGGAA 58.225 36.000 0.00 0.00 46.92 3.53
762 1580 6.367374 TGAACAGATGTAACCAATACTGGA 57.633 37.500 0.00 0.00 46.92 3.86
764 1582 7.201732 GGGAATGAACAGATGTAACCAATACTG 60.202 40.741 0.00 0.00 35.42 2.74
765 1583 6.828785 GGGAATGAACAGATGTAACCAATACT 59.171 38.462 0.00 0.00 35.42 2.12
766 1584 6.828785 AGGGAATGAACAGATGTAACCAATAC 59.171 38.462 0.00 0.00 34.92 1.89
767 1585 6.969043 AGGGAATGAACAGATGTAACCAATA 58.031 36.000 0.00 0.00 0.00 1.90
768 1586 5.831103 AGGGAATGAACAGATGTAACCAAT 58.169 37.500 0.00 0.00 0.00 3.16
769 1587 5.255397 AGGGAATGAACAGATGTAACCAA 57.745 39.130 0.00 0.00 0.00 3.67
770 1588 4.927267 AGGGAATGAACAGATGTAACCA 57.073 40.909 0.00 0.00 0.00 3.67
771 1589 4.640647 GGAAGGGAATGAACAGATGTAACC 59.359 45.833 0.00 0.00 0.00 2.85
772 1590 5.501156 AGGAAGGGAATGAACAGATGTAAC 58.499 41.667 0.00 0.00 0.00 2.50
773 1591 5.779241 AGGAAGGGAATGAACAGATGTAA 57.221 39.130 0.00 0.00 0.00 2.41
774 1592 5.779241 AAGGAAGGGAATGAACAGATGTA 57.221 39.130 0.00 0.00 0.00 2.29
775 1593 4.664688 AAGGAAGGGAATGAACAGATGT 57.335 40.909 0.00 0.00 0.00 3.06
776 1594 4.768968 ACAAAGGAAGGGAATGAACAGATG 59.231 41.667 0.00 0.00 0.00 2.90
777 1595 5.003096 ACAAAGGAAGGGAATGAACAGAT 57.997 39.130 0.00 0.00 0.00 2.90
778 1596 4.398319 GACAAAGGAAGGGAATGAACAGA 58.602 43.478 0.00 0.00 0.00 3.41
779 1597 3.189287 CGACAAAGGAAGGGAATGAACAG 59.811 47.826 0.00 0.00 0.00 3.16
780 1598 3.146066 CGACAAAGGAAGGGAATGAACA 58.854 45.455 0.00 0.00 0.00 3.18
781 1599 3.058224 CACGACAAAGGAAGGGAATGAAC 60.058 47.826 0.00 0.00 0.00 3.18
782 1600 3.146066 CACGACAAAGGAAGGGAATGAA 58.854 45.455 0.00 0.00 0.00 2.57
783 1601 2.105821 ACACGACAAAGGAAGGGAATGA 59.894 45.455 0.00 0.00 0.00 2.57
784 1602 2.504367 ACACGACAAAGGAAGGGAATG 58.496 47.619 0.00 0.00 0.00 2.67
785 1603 2.884639 CAACACGACAAAGGAAGGGAAT 59.115 45.455 0.00 0.00 0.00 3.01
786 1604 2.294074 CAACACGACAAAGGAAGGGAA 58.706 47.619 0.00 0.00 0.00 3.97
787 1605 1.210967 ACAACACGACAAAGGAAGGGA 59.789 47.619 0.00 0.00 0.00 4.20
788 1606 1.602377 GACAACACGACAAAGGAAGGG 59.398 52.381 0.00 0.00 0.00 3.95
789 1607 1.602377 GGACAACACGACAAAGGAAGG 59.398 52.381 0.00 0.00 0.00 3.46
790 1608 1.602377 GGGACAACACGACAAAGGAAG 59.398 52.381 0.00 0.00 0.00 3.46
791 1609 1.670791 GGGACAACACGACAAAGGAA 58.329 50.000 0.00 0.00 0.00 3.36
792 1610 0.531090 CGGGACAACACGACAAAGGA 60.531 55.000 0.00 0.00 46.86 3.36
793 1611 0.812412 ACGGGACAACACGACAAAGG 60.812 55.000 0.00 0.00 46.86 3.11
794 1612 0.580104 GACGGGACAACACGACAAAG 59.420 55.000 0.00 0.00 46.86 2.77
795 1613 0.810823 GGACGGGACAACACGACAAA 60.811 55.000 0.00 0.00 46.86 2.83
796 1614 1.227321 GGACGGGACAACACGACAA 60.227 57.895 0.00 0.00 46.86 3.18
797 1615 1.957765 TTGGACGGGACAACACGACA 61.958 55.000 0.00 0.00 46.86 4.35
798 1616 0.810823 TTTGGACGGGACAACACGAC 60.811 55.000 0.00 0.00 46.86 4.34
799 1617 0.107800 TTTTGGACGGGACAACACGA 60.108 50.000 0.00 0.00 46.86 4.35
801 1619 1.096416 TGTTTTGGACGGGACAACAC 58.904 50.000 0.00 0.00 0.00 3.32
802 1620 1.746220 CTTGTTTTGGACGGGACAACA 59.254 47.619 0.00 0.00 0.00 3.33
803 1621 2.018515 TCTTGTTTTGGACGGGACAAC 58.981 47.619 0.00 0.00 0.00 3.32
804 1622 2.421751 TCTTGTTTTGGACGGGACAA 57.578 45.000 0.00 0.00 0.00 3.18
805 1623 2.294074 CTTCTTGTTTTGGACGGGACA 58.706 47.619 0.00 0.00 0.00 4.02
806 1624 1.607148 CCTTCTTGTTTTGGACGGGAC 59.393 52.381 0.00 0.00 0.00 4.46
807 1625 1.491332 TCCTTCTTGTTTTGGACGGGA 59.509 47.619 0.00 0.00 0.00 5.14
808 1626 1.975660 TCCTTCTTGTTTTGGACGGG 58.024 50.000 0.00 0.00 0.00 5.28
809 1627 3.380320 ACTTTCCTTCTTGTTTTGGACGG 59.620 43.478 0.00 0.00 0.00 4.79
810 1628 4.351192 CACTTTCCTTCTTGTTTTGGACG 58.649 43.478 0.00 0.00 0.00 4.79
811 1629 4.682787 CCACTTTCCTTCTTGTTTTGGAC 58.317 43.478 0.00 0.00 0.00 4.02
812 1630 3.132111 GCCACTTTCCTTCTTGTTTTGGA 59.868 43.478 0.00 0.00 0.00 3.53
813 1631 3.118811 TGCCACTTTCCTTCTTGTTTTGG 60.119 43.478 0.00 0.00 0.00 3.28
814 1632 3.865164 GTGCCACTTTCCTTCTTGTTTTG 59.135 43.478 0.00 0.00 0.00 2.44
815 1633 3.118775 GGTGCCACTTTCCTTCTTGTTTT 60.119 43.478 0.00 0.00 0.00 2.43
816 1634 2.430694 GGTGCCACTTTCCTTCTTGTTT 59.569 45.455 0.00 0.00 0.00 2.83
817 1635 2.031870 GGTGCCACTTTCCTTCTTGTT 58.968 47.619 0.00 0.00 0.00 2.83
818 1636 1.064017 TGGTGCCACTTTCCTTCTTGT 60.064 47.619 0.00 0.00 0.00 3.16
819 1637 1.338020 GTGGTGCCACTTTCCTTCTTG 59.662 52.381 13.68 0.00 43.12 3.02
820 1638 1.692411 GTGGTGCCACTTTCCTTCTT 58.308 50.000 13.68 0.00 43.12 2.52
821 1639 0.178990 GGTGGTGCCACTTTCCTTCT 60.179 55.000 19.37 0.00 45.52 2.85
822 1640 0.178990 AGGTGGTGCCACTTTCCTTC 60.179 55.000 19.37 2.88 45.52 3.46
823 1641 1.145571 TAGGTGGTGCCACTTTCCTT 58.854 50.000 19.37 3.67 45.52 3.36
824 1642 1.145571 TTAGGTGGTGCCACTTTCCT 58.854 50.000 19.37 11.39 45.52 3.36
825 1643 1.989706 TTTAGGTGGTGCCACTTTCC 58.010 50.000 19.37 4.59 45.52 3.13
826 1644 3.365969 CGATTTTAGGTGGTGCCACTTTC 60.366 47.826 19.37 6.99 45.52 2.62
827 1645 2.556622 CGATTTTAGGTGGTGCCACTTT 59.443 45.455 19.37 11.45 45.52 2.66
828 1646 2.159382 CGATTTTAGGTGGTGCCACTT 58.841 47.619 19.37 15.15 45.52 3.16
829 1647 1.349688 TCGATTTTAGGTGGTGCCACT 59.650 47.619 19.37 9.28 45.52 4.00
830 1648 1.816074 TCGATTTTAGGTGGTGCCAC 58.184 50.000 12.66 12.66 45.49 5.01
831 1649 2.799126 ATCGATTTTAGGTGGTGCCA 57.201 45.000 0.00 0.00 40.61 4.92
832 1650 3.003378 GCTAATCGATTTTAGGTGGTGCC 59.997 47.826 17.19 0.00 37.58 5.01
833 1651 3.877508 AGCTAATCGATTTTAGGTGGTGC 59.122 43.478 17.19 7.18 38.22 5.01
834 1652 6.436843 AAAGCTAATCGATTTTAGGTGGTG 57.563 37.500 17.19 0.00 39.26 4.17
835 1653 6.657541 TCAAAAGCTAATCGATTTTAGGTGGT 59.342 34.615 17.19 3.71 39.04 4.16
836 1654 7.083875 TCAAAAGCTAATCGATTTTAGGTGG 57.916 36.000 17.19 7.87 39.04 4.61
837 1655 9.651718 GTATCAAAAGCTAATCGATTTTAGGTG 57.348 33.333 17.19 8.27 39.04 4.00
838 1656 9.614792 AGTATCAAAAGCTAATCGATTTTAGGT 57.385 29.630 17.19 11.25 39.04 3.08
872 1690 8.540388 TGAGTGCTATAGTGGAAAAGATTAAGT 58.460 33.333 0.84 0.00 0.00 2.24
873 1691 8.821894 GTGAGTGCTATAGTGGAAAAGATTAAG 58.178 37.037 0.84 0.00 0.00 1.85
879 1697 4.631813 GGTGTGAGTGCTATAGTGGAAAAG 59.368 45.833 0.84 0.00 0.00 2.27
881 1699 3.838317 AGGTGTGAGTGCTATAGTGGAAA 59.162 43.478 0.84 0.00 0.00 3.13
882 1700 3.441101 AGGTGTGAGTGCTATAGTGGAA 58.559 45.455 0.84 0.00 0.00 3.53
884 1702 3.068307 GGTAGGTGTGAGTGCTATAGTGG 59.932 52.174 0.84 0.00 0.00 4.00
885 1703 3.954904 AGGTAGGTGTGAGTGCTATAGTG 59.045 47.826 0.84 0.00 0.00 2.74
886 1704 4.252570 AGGTAGGTGTGAGTGCTATAGT 57.747 45.455 0.84 0.00 0.00 2.12
887 1705 5.378332 AGTAGGTAGGTGTGAGTGCTATAG 58.622 45.833 0.00 0.00 0.00 1.31
892 1710 2.448453 AGAGTAGGTAGGTGTGAGTGC 58.552 52.381 0.00 0.00 0.00 4.40
893 1711 3.193691 CCAAGAGTAGGTAGGTGTGAGTG 59.806 52.174 0.00 0.00 0.00 3.51
895 1713 2.761208 CCCAAGAGTAGGTAGGTGTGAG 59.239 54.545 0.00 0.00 0.00 3.51
897 1715 2.537143 ACCCAAGAGTAGGTAGGTGTG 58.463 52.381 0.00 0.00 33.52 3.82
923 1741 7.781693 GGGGAACAATGGCATCTTATATATCAT 59.218 37.037 0.00 0.00 0.00 2.45
924 1742 7.036644 AGGGGAACAATGGCATCTTATATATCA 60.037 37.037 0.00 0.00 0.00 2.15
925 1743 7.349598 AGGGGAACAATGGCATCTTATATATC 58.650 38.462 0.00 0.00 0.00 1.63
926 1744 7.289326 AGGGGAACAATGGCATCTTATATAT 57.711 36.000 0.00 0.00 0.00 0.86
928 1746 5.605540 AGGGGAACAATGGCATCTTATAT 57.394 39.130 0.00 0.00 0.00 0.86
930 1748 3.979501 AGGGGAACAATGGCATCTTAT 57.020 42.857 0.00 0.00 0.00 1.73
931 1749 3.525609 TGTAGGGGAACAATGGCATCTTA 59.474 43.478 0.00 0.00 0.00 2.10
932 1750 2.311542 TGTAGGGGAACAATGGCATCTT 59.688 45.455 0.00 0.00 0.00 2.40
933 1751 1.922447 TGTAGGGGAACAATGGCATCT 59.078 47.619 0.00 0.00 0.00 2.90
934 1752 2.435372 TGTAGGGGAACAATGGCATC 57.565 50.000 0.00 0.00 0.00 3.91
935 1753 2.917713 TTGTAGGGGAACAATGGCAT 57.082 45.000 0.00 0.00 34.50 4.40
936 1754 2.917713 ATTGTAGGGGAACAATGGCA 57.082 45.000 1.63 0.00 45.90 4.92
943 1761 7.013369 GGAGATATTTTGTGATTGTAGGGGAAC 59.987 40.741 0.00 0.00 0.00 3.62
946 1764 6.605119 AGGAGATATTTTGTGATTGTAGGGG 58.395 40.000 0.00 0.00 0.00 4.79
949 1767 9.050601 GGAGAAGGAGATATTTTGTGATTGTAG 57.949 37.037 0.00 0.00 0.00 2.74
951 1769 7.637511 AGGAGAAGGAGATATTTTGTGATTGT 58.362 34.615 0.00 0.00 0.00 2.71
952 1770 7.228308 GGAGGAGAAGGAGATATTTTGTGATTG 59.772 40.741 0.00 0.00 0.00 2.67
953 1771 7.286313 GGAGGAGAAGGAGATATTTTGTGATT 58.714 38.462 0.00 0.00 0.00 2.57
954 1772 6.183361 GGGAGGAGAAGGAGATATTTTGTGAT 60.183 42.308 0.00 0.00 0.00 3.06
956 1774 5.131809 AGGGAGGAGAAGGAGATATTTTGTG 59.868 44.000 0.00 0.00 0.00 3.33
957 1775 5.292815 AGGGAGGAGAAGGAGATATTTTGT 58.707 41.667 0.00 0.00 0.00 2.83
958 1776 5.606329 AGAGGGAGGAGAAGGAGATATTTTG 59.394 44.000 0.00 0.00 0.00 2.44
959 1777 5.798419 AGAGGGAGGAGAAGGAGATATTTT 58.202 41.667 0.00 0.00 0.00 1.82
960 1778 5.402630 GAGAGGGAGGAGAAGGAGATATTT 58.597 45.833 0.00 0.00 0.00 1.40
961 1779 4.202781 GGAGAGGGAGGAGAAGGAGATATT 60.203 50.000 0.00 0.00 0.00 1.28
962 1780 3.336694 GGAGAGGGAGGAGAAGGAGATAT 59.663 52.174 0.00 0.00 0.00 1.63
965 1783 0.930726 GGAGAGGGAGGAGAAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
966 1784 0.633921 TGGAGAGGGAGGAGAAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
967 1785 1.007721 CTTGGAGAGGGAGGAGAAGGA 59.992 57.143 0.00 0.00 0.00 3.36
968 1786 1.007721 TCTTGGAGAGGGAGGAGAAGG 59.992 57.143 0.00 0.00 0.00 3.46
969 1787 2.107366 GTCTTGGAGAGGGAGGAGAAG 58.893 57.143 0.00 0.00 0.00 2.85
970 1788 1.433199 TGTCTTGGAGAGGGAGGAGAA 59.567 52.381 0.00 0.00 0.00 2.87
971 1789 1.084866 TGTCTTGGAGAGGGAGGAGA 58.915 55.000 0.00 0.00 0.00 3.71
972 1790 1.190643 GTGTCTTGGAGAGGGAGGAG 58.809 60.000 0.00 0.00 0.00 3.69
973 1791 0.487325 TGTGTCTTGGAGAGGGAGGA 59.513 55.000 0.00 0.00 0.00 3.71
974 1792 1.577736 ATGTGTCTTGGAGAGGGAGG 58.422 55.000 0.00 0.00 0.00 4.30
975 1793 2.568956 TGAATGTGTCTTGGAGAGGGAG 59.431 50.000 0.00 0.00 0.00 4.30
977 1795 2.038952 TGTGAATGTGTCTTGGAGAGGG 59.961 50.000 0.00 0.00 0.00 4.30
978 1796 3.407424 TGTGAATGTGTCTTGGAGAGG 57.593 47.619 0.00 0.00 0.00 3.69
980 1798 4.022935 GCATTTGTGAATGTGTCTTGGAGA 60.023 41.667 1.63 0.00 43.67 3.71
981 1799 4.232221 GCATTTGTGAATGTGTCTTGGAG 58.768 43.478 1.63 0.00 43.67 3.86
982 1800 3.005684 GGCATTTGTGAATGTGTCTTGGA 59.994 43.478 1.63 0.00 43.67 3.53
984 1802 3.979948 TGGCATTTGTGAATGTGTCTTG 58.020 40.909 1.63 0.00 43.67 3.02
985 1803 4.616604 CGATGGCATTTGTGAATGTGTCTT 60.617 41.667 0.00 0.00 43.67 3.01
988 1806 2.671914 GCGATGGCATTTGTGAATGTGT 60.672 45.455 0.00 0.00 43.67 3.72
990 1808 1.545136 TGCGATGGCATTTGTGAATGT 59.455 42.857 0.00 0.00 46.21 2.71
991 1809 2.281140 TGCGATGGCATTTGTGAATG 57.719 45.000 0.00 0.00 46.21 2.67
1003 1821 2.359354 TTCCCGTTGGTGCGATGG 60.359 61.111 0.00 0.00 0.00 3.51
1005 1823 0.250793 TATGTTCCCGTTGGTGCGAT 59.749 50.000 0.00 0.00 0.00 4.58
1007 1825 0.390603 TCTATGTTCCCGTTGGTGCG 60.391 55.000 0.00 0.00 0.00 5.34
1008 1826 1.940613 GATCTATGTTCCCGTTGGTGC 59.059 52.381 0.00 0.00 0.00 5.01
1009 1827 3.543680 AGATCTATGTTCCCGTTGGTG 57.456 47.619 0.00 0.00 0.00 4.17
1010 1828 4.099573 CACTAGATCTATGTTCCCGTTGGT 59.900 45.833 2.11 0.00 0.00 3.67
1011 1829 4.341235 TCACTAGATCTATGTTCCCGTTGG 59.659 45.833 2.11 0.00 0.00 3.77
1012 1830 5.515797 TCACTAGATCTATGTTCCCGTTG 57.484 43.478 2.11 0.00 0.00 4.10
1013 1831 5.833667 TCATCACTAGATCTATGTTCCCGTT 59.166 40.000 2.11 0.00 30.20 4.44
1014 1832 5.386060 TCATCACTAGATCTATGTTCCCGT 58.614 41.667 2.11 0.00 30.20 5.28
1015 1833 5.966742 TCATCACTAGATCTATGTTCCCG 57.033 43.478 2.11 0.00 30.20 5.14
1016 1834 6.459923 GGTTCATCACTAGATCTATGTTCCC 58.540 44.000 2.11 0.00 30.20 3.97
1017 1835 6.042093 TGGGTTCATCACTAGATCTATGTTCC 59.958 42.308 2.11 6.83 30.20 3.62
1018 1836 7.055667 TGGGTTCATCACTAGATCTATGTTC 57.944 40.000 2.11 0.00 30.20 3.18
1019 1837 7.345653 TCTTGGGTTCATCACTAGATCTATGTT 59.654 37.037 2.11 0.00 30.20 2.71
1020 1838 6.841229 TCTTGGGTTCATCACTAGATCTATGT 59.159 38.462 2.11 1.19 30.20 2.29
1022 1840 8.373981 CAATCTTGGGTTCATCACTAGATCTAT 58.626 37.037 2.11 0.00 40.15 1.98
1024 1842 6.409005 CCAATCTTGGGTTCATCACTAGATCT 60.409 42.308 0.00 0.00 40.15 2.75
1027 1845 5.102953 CCAATCTTGGGTTCATCACTAGA 57.897 43.478 0.00 0.00 44.70 2.43
1045 2167 0.908910 TCACCACTACCATCGCCAAT 59.091 50.000 0.00 0.00 0.00 3.16
1050 2172 0.934901 CGCGATCACCACTACCATCG 60.935 60.000 0.00 0.00 40.89 3.84
1062 2184 2.507339 TGCTTGTATCATCGCGATCA 57.493 45.000 20.85 6.99 35.39 2.92
1067 2189 3.247173 CCTCTTCTTGCTTGTATCATCGC 59.753 47.826 0.00 0.00 0.00 4.58
1188 2310 0.036388 GTTGAATCTCCACCTCGGCA 60.036 55.000 0.00 0.00 33.14 5.69
1191 2313 4.082190 TGAGTTAGTTGAATCTCCACCTCG 60.082 45.833 0.00 0.00 0.00 4.63
1238 2360 1.649271 GGTGGGGCTCTTGGATGGAT 61.649 60.000 0.00 0.00 0.00 3.41
1259 2381 1.134491 CACCCCCTAACTCCAACGATC 60.134 57.143 0.00 0.00 0.00 3.69
1293 2415 0.684153 CCCATAGTTGCCCCTGTTGG 60.684 60.000 0.00 0.00 0.00 3.77
1297 2419 2.102578 CTTTTCCCATAGTTGCCCCTG 58.897 52.381 0.00 0.00 0.00 4.45
1313 2435 2.380064 TGTGCCTGATTGGTCCTTTT 57.620 45.000 0.00 0.00 38.35 2.27
1466 2588 4.195334 GCACGGGGATGGCAGGAT 62.195 66.667 0.00 0.00 0.00 3.24
1520 2642 2.142292 AACATGGAGGGGCTCACCAC 62.142 60.000 5.40 0.00 42.91 4.16
1539 2661 0.179059 TGCCAAAGCGTTGAGAGACA 60.179 50.000 14.32 1.54 44.31 3.41
1573 2695 3.927142 ACTTCGTGAAAGATCTTTAGGCG 59.073 43.478 20.51 21.45 38.44 5.52
1577 2699 6.427150 GCACAAACTTCGTGAAAGATCTTTA 58.573 36.000 20.51 2.41 38.44 1.85
1602 2724 3.369147 GCATAAGTATGTGCCAGATAGCG 59.631 47.826 0.54 0.00 37.68 4.26
1657 2779 4.505313 CCTTAAAGTTGTCCTTCAAGGC 57.495 45.455 0.00 0.00 40.86 4.35
1769 2891 5.646215 TGTTGTAATTGTAAGGACCCCAAT 58.354 37.500 0.00 0.00 0.00 3.16
1834 2956 0.521735 GTGAAAGTGCCGAATGGGTC 59.478 55.000 0.00 0.00 38.44 4.46
1959 3082 0.752376 GGTAGCTAGAGCCACCGACT 60.752 60.000 3.30 0.00 42.49 4.18
2132 3255 7.112287 CGATAGAGACGTTTGAGATATTCACAC 59.888 40.741 0.00 0.00 34.32 3.82
2259 3597 2.746362 CTCAGAATGCACAAGGTTCTCC 59.254 50.000 0.00 0.00 34.76 3.71
2283 3621 1.194121 TGTCTCTGGCCTTGCTAGCA 61.194 55.000 14.93 14.93 37.07 3.49
2385 3723 4.321230 GGTGAACTCATTGTCCAATTGGTC 60.321 45.833 23.76 18.76 36.34 4.02
2400 3738 1.513622 GGAGAGGAGCGGTGAACTC 59.486 63.158 0.00 0.00 0.00 3.01
2459 3797 6.724893 AATAAAATGGGAATCCTTAACGGG 57.275 37.500 0.00 0.00 0.00 5.28
2498 3836 5.300539 CCTCATCAAGACCTCTCTTTCGATA 59.699 44.000 0.00 0.00 34.20 2.92
2698 4096 6.121776 TGATTAGCCTCAGTCACCTAAAAA 57.878 37.500 0.00 0.00 0.00 1.94
2699 4097 5.755409 TGATTAGCCTCAGTCACCTAAAA 57.245 39.130 0.00 0.00 0.00 1.52
2700 4098 5.755409 TTGATTAGCCTCAGTCACCTAAA 57.245 39.130 0.00 0.00 0.00 1.85
2701 4099 5.957771 ATTGATTAGCCTCAGTCACCTAA 57.042 39.130 0.00 0.00 0.00 2.69
2702 4100 5.451937 CGAATTGATTAGCCTCAGTCACCTA 60.452 44.000 0.00 0.00 0.00 3.08
2703 4101 4.681781 CGAATTGATTAGCCTCAGTCACCT 60.682 45.833 0.00 0.00 0.00 4.00
2704 4102 3.557595 CGAATTGATTAGCCTCAGTCACC 59.442 47.826 0.00 0.00 0.00 4.02
2705 4103 4.433615 TCGAATTGATTAGCCTCAGTCAC 58.566 43.478 0.00 0.00 0.00 3.67
2706 4104 4.736126 TCGAATTGATTAGCCTCAGTCA 57.264 40.909 0.00 0.00 0.00 3.41
2707 4105 5.292765 TGATCGAATTGATTAGCCTCAGTC 58.707 41.667 0.00 0.00 37.47 3.51
2708 4106 5.282055 TGATCGAATTGATTAGCCTCAGT 57.718 39.130 0.00 0.00 37.47 3.41
2709 4107 6.798315 ATTGATCGAATTGATTAGCCTCAG 57.202 37.500 0.00 0.00 37.47 3.35
2710 4108 8.150296 TCTAATTGATCGAATTGATTAGCCTCA 58.850 33.333 11.20 0.00 37.47 3.86
2711 4109 8.539770 TCTAATTGATCGAATTGATTAGCCTC 57.460 34.615 11.20 0.00 37.47 4.70
2712 4110 8.908786 TTCTAATTGATCGAATTGATTAGCCT 57.091 30.769 11.20 0.00 37.47 4.58
2741 4139 5.811190 TCTAATTGATCGACCCCTCAAAAA 58.189 37.500 3.47 0.00 35.20 1.94
2742 4140 5.429681 TCTAATTGATCGACCCCTCAAAA 57.570 39.130 3.47 0.00 35.20 2.44
2743 4141 5.611374 GATCTAATTGATCGACCCCTCAAA 58.389 41.667 3.47 0.00 41.68 2.69
2744 4142 5.215252 GATCTAATTGATCGACCCCTCAA 57.785 43.478 1.91 1.91 41.68 3.02
2745 4143 4.873746 GATCTAATTGATCGACCCCTCA 57.126 45.455 0.00 0.00 41.68 3.86
2858 4262 1.672854 CTGACGCGGGGATCCAACTA 61.673 60.000 15.23 0.00 0.00 2.24
2941 4375 4.265507 AACGGGGAGGACTGGGGT 62.266 66.667 0.00 0.00 0.00 4.95
3039 4489 2.758423 TCCTGATTCTAGCGTTGCTGTA 59.242 45.455 0.70 0.00 40.10 2.74
3040 4490 1.550524 TCCTGATTCTAGCGTTGCTGT 59.449 47.619 0.70 0.00 40.10 4.40
3082 4536 0.041488 CCGATGTACGTACCTCGAGC 60.041 60.000 38.05 18.51 43.76 5.03
3117 4579 8.232913 TGAAAAGAAAACCTAGTAGTTGCAAT 57.767 30.769 0.59 0.00 0.00 3.56
3125 4587 9.227777 GGCTAAAGATGAAAAGAAAACCTAGTA 57.772 33.333 0.00 0.00 0.00 1.82
3170 4632 9.520515 AAAACTAACTGTGATTGATGTATCCTT 57.479 29.630 0.00 0.00 0.00 3.36
3230 4795 0.868406 GCTAACATATCCCTGCGTGC 59.132 55.000 0.00 0.00 0.00 5.34
3231 4796 2.138320 CAGCTAACATATCCCTGCGTG 58.862 52.381 0.00 0.00 0.00 5.34
3232 4797 1.541233 GCAGCTAACATATCCCTGCGT 60.541 52.381 0.00 0.00 39.39 5.24
3233 4798 1.151668 GCAGCTAACATATCCCTGCG 58.848 55.000 0.00 0.00 39.39 5.18
3234 4799 2.260844 TGCAGCTAACATATCCCTGC 57.739 50.000 4.14 4.14 46.68 4.85
3235 4800 4.001652 CTGATGCAGCTAACATATCCCTG 58.998 47.826 2.53 0.00 0.00 4.45
3277 4859 2.996631 ACCAGTGCTGATCCAAATCTC 58.003 47.619 0.02 0.00 32.75 2.75
3284 4866 1.679032 GGTACCAACCAGTGCTGATCC 60.679 57.143 7.15 0.00 45.98 3.36
3285 4867 1.739067 GGTACCAACCAGTGCTGATC 58.261 55.000 7.15 0.00 45.98 2.92
3286 4868 3.957288 GGTACCAACCAGTGCTGAT 57.043 52.632 7.15 0.00 45.98 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.