>input_sequence_54414
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------ATGCCATCGCACCAACGGGAACA
TAGATCTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GTGATGAA
CCCAAGATTGGCGATGGTAGTGGTGATCGCGATGATACAAGCAAGAAGAGGTGCATCACCAATGAACTCCCGTCCTTCAA
TTCTACAAGACATGATTTGCATCTCCTCGAGTTCAAGAGTGGAAACCAAAAGAATGGAGATGAAGATGATGCCGAGGTGG
AGATTCAACTAACTCAAGTGGATGGGAAGGAGACTGGTAATCCATCCAAGAGCCCCACCAGATCGTTGGAGTTAGGGGGT
GATACCTCACCTCACCAACAGGGGCAACTATGGGAAAAGGACCAATCAGGCACATGGTGGAAGCAGTGCATTAGCCCTGA
CTACCCTGAGGCAAAATTCCGCAGCCACTTCCGGATGGGTTGGGGCACCTTTGACATGATCTGCGATGCATTGGCTTCCT
CTATTGCCAAAAAGGACACCCCACTCCATCCTGCCATCCCCGTGCGCCAACGTGTTGCTATTTGTGTCTGGCGCCTCGCA
AGTGGTGAGCCCCTCCATGTTGTCTCTCAACGCTTTGGCATTGCACTCTCTACCCGCCTAAAGATCTTTCACGAAGTTTG
TGCCGCTATCTGGCACATACTTATGCCCCGCTTTATCCAGTGGCCTGACCAGACAATCGCCTTGAAGGACAACTTTAAGG
CCATCTCCGGTATCCCAGACGTTGTTGGTGCCATCTATACCACCCATGTCCAGATCATCCAACCGATATTGTGGGCCAGT
GATTACCTCGATTGGGGTCCTTACAATTACAACAGGAATAGCACCTACCTCTCAACCACCATCCAAGGAGTTGTCGACCC
ATTCGGCACTTTCACCGATGTA-TGCATTGGTTGCCCTGGGGCCCTGCGTGACGATGAGATCGTCTGTATTTCGGGTCTA
CAACAGCGTGGAAGACCTCAGGTGATGCCTAGTTCCTGGGTAGTCGGTGGCTCTAGCTACCCACTAATGGAGTGGCTTCT
CGTCCCATACCCACACCAAAACTTAACAAGGGAACAACATTCTTTCAACAAGAAGGTCATGAAGGTTCATCGTGTGGCCG
TGGATGCCTTTGCAAGGCTCAGGGGGCGATGGGCATTCTTGCAAAAGCGCATAGGTGTGAATATCTCAAACGTCTCTATC
GTGATCGGTGCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TGTTGTGTGTTGC
ACAACATATGTGAGGTCAAAGGGGAGGTGATGAGCCCAGAGTTGCGGTGTGATGTCATCGACTTTGAGACCGTGCCGGAG
AACCTTGTGCATTCTGAGAGTGCTAGCAAGGCCAGAGACAAGATCGCACACACACTCTTCTAG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3D_1_TraesCS3D01G318900
ACTCCCGGAAACCAAATTGGATTTCCGAGAACAACTGCAGTTTTACAAGTGAAGACCCTC-GAAGAAAGTAGAAC---TT
TTTTTGCGGGAAACTAACCTCCTTACACCCGCTAGTAGCCGGCGACAAGGCCCGCCCACATGGAAAAGGACGTCACCACA
AAAGGGACTCATCAATGCCGTCATGAGGTGTCCACTCTGGGGAATCCTCCTTGAAGATTTCTTTTCAAGAGTACGCAATC
TCGTAACATAGCTTTGTAGAAGGCAGAAAGTTATTTACAAGACAAGAGAAAACGGAAATTACACCGCCATGAAGTGGCAT
GCAACGGCTCTCCAACTCCTTCTATGTGTTTTAGGATC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTAGCTAGGTTTTTCTGCACTAGTGACTCACTTA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GACAATTTTCTATGTGTTTTAGGATCCTAGCTAGGCTTTTCTGCACCAGTGAATCACTTATACAATTTTCTATGTG
TTTTAGGATCCTAGCGAGCATACATTGAGGACTCCACAAGAAGCACT-CCTGCAAGCACTCACTAAATAGCCCTTCAGAT
CGAACATGAAGTAGGAGTCTAGTTGGCAAATACCTGGCACAATACGAATTAGCATGTCAATACAAGAAACGTTGTAAATT
ATTGCCAAAAGATAAAATAAATTAAAACTCGTAGACTGATGCAAGTGCATGTAGTCCTCCAATTTTGGCAATCATTTCCC
CTACCATGATGATGACAAAAGTCTCATGGTTCGCTCATATATAGTTATTTCCTTCGTGTTCCAGTATTGGTTACATCTGT
TCATTCCCTTCCTTTGTCGTGTTGTCCCGTCCAAAACAAGAAGGAAAGTGGCACCACCTAAAATCGATTAGCTTTTGATA
CTTTATGTTACTTAATCTTTTCCACTATAGCACTCACACCTACCTACTCTTGGGTAGTAAATGATATATAAGATGCCATT
GTTCCCCTACAATCACAAAATATCTCCTTCTCCTCCCTCTCCAAGACACATTCACAAATGCCATCGCACCAACGGGAACA
TAGATCTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GTGATGAA
CCCAAGATTGGCGATGGTAGTGGTGATCGCGATGATACAAGCAAGAAGAGGTGCATCACCAATGAACTCCCGTCCTTCAA
TTCTACAAGACATGATTTGCATCTCCTCGAGTTCAAGAGTGGAAACCAAAAGAATGGAGATGAAGATGATGCCGAGGTGG
AGATTCAACTAACTCAAGTGGATGGGAAGGAGACTGGTAATCCATCCAAGAGCCCCACCAGATCGTTGGAGTTAGGGGGT
GATACCTCACCTCACCAACAGGGGCAACTATGGGAAAAGGACCAATCAGGCACATGGTGGAAGCAGTGCATTAGCCCTGA
CTACCCTGAGGCAAAATTCCGCAGCCACTTCCGGATGGGTTGGGGCACCTTTGACATGATCTGCGATGCATTGGCTTCCT
CTATTGCCAAAAAGGACACCCCACTCCATCCTGCCATCCCCGTGCGCCAACGTGTTGCTATTTGTGTCTGGCGCCTCGCA
AGTGGTGAGCCCCTCCATGTTGTCTCTCAACGCTTTGGCATTGCACTCTCTACCCGCCTAAAGATCTTTCACGAAGTTTG
TGCCGCTATCTGGCACATACTTATGCCCCGCTTTATCCAGTGGCCTGACCAGACAATCGCCTTGAAGGACAACTTTAAGG
CCATCTCCGGTATCCCAGACGTTGTTGGTGCCATCTATACCACCCATGTCCAGATCATCCAACCGATATTGTGGGCCAGT
GATTACCTCGATTGGGGTCCTTACAATTACAACAGGAATAGCACCTACCTCTCAACCACCATCCAAGGAGTTGTCGACCC
ATTCGGCACTTTCACCGATGTA-TGCATTGGTTGCCCTGGGGCCCTGCGTGACGATGAGATCGTCTGTATTTCGGGTCTA
CAACAGCGTGGAAGACCTCAGGTGATGCCTAGTTCCTGGGTAGTCGGTGGCTCTAGCTACCCACTAATGGAGTGGCTTCT
CGTCCCATACCCACACCAAAACTTAACAAGGGAACAACATTCTTTCAACAAGAAGGTCATGAAGGTTCATCGTGTGGCCG
TGGATGCCTTTGCAAGGCTCAGGGGGCGATGGGCATTCTTGCAAAAGCGCATAGGTGTGAATATCTCAAACGTCTCTATC
GTGATCGGTGCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TGTTGTGTGTTGC
ACAACATATGTGAGGTCAAAGGGGAGGTGATGAGCCCAGAGTTGCGGTGTGATGTCATCGACTTTGAGACCGTGCCGGAG
AACCTTGTGCATTCTGAGAGTGCTAGCAAGGCCAGAGACAAGATCGCACACACACTCTTCTAGTGCATTTGGTGGCACCA
ACTTCTGATGCTCATTATCAGATTATCATTATTACCATTTTCGACCAATTGGACAATGAGTTCACCGCTCCTCTCCCTTC
CTTTCTTGTTAATAACTTCATCTGCATTGAAACCATCCCGTTAAGGATTCCCATTTTATTTTTACTTACTCATTGTATCG
AAAGAGAGGTCTTGATGAGGTGGTTGAGATCCCAAGACATCATGTAAAAAAGCATACCGGCGAAGAAAACATCTCCATTG
CTATCTTTTTTTCTTGACATTATTTGTTTTGAGATTGTTTACCACATACGCCATGTGGTTCTGGTTTGCTTAATTTAC--
----------------------------------------------------------ATCAATTCGATCAATTTTTTTT
AGGCTAATCAACTTTTTTTTAGGTGACTGAGGCTAATCAATTCGATCAATTAGAATTTTTTTTGAGGGGTCGATCAATTA
GATCTGAGACAAGGTT---TATTTCAAAAGCCCATAGTATAATTCCAATCCCTC---TTTTTTTTTTAACTATGCGCACA
ACCTTGGAGCGGCCCAGTGCCTAGTTGGATCCCCGCGTCAGACCTGACTTTGGTCACTGACGTGTGGGCCCAGGGGAGCT
GCGTCCAGTTGGA------------------------------GGTAGGCGGTAACCCCAGTCCTCCCCGTTCCTGAAGG
CCGCCGACT---------GCCCCGGTCGCCACCTCCCAAATCCCTATT----TATTCCCAATGCGTGAAGTC---CAGAT
TCGCTGTTTACAGCAACGCTAGAATCAGGAATTCTAG----ATGAGATTGCAGCAGCTCGAGGTACG---TACATCGGCG
CCCGT-----CATCACAGATTGCAACTACTAGGTTTTCTTTTCATCTTTAGCCAAGTCTAAAATCTGTGATAAGGATACA
TCAATCACAGTTAGTTT---------------------------------------------------------------
----------------------------------------TTTTTAGGGATTGTCGATTGCAATTTGCAGCAGAGCACGC
-----------------AGGGATATGTTAGCTGCATCAGCCATCAGCCGTACTGCATAGAGATTTGGATCAG-------C
ACT-GGTTGGTACCGGCAATATATTCATACCAACA
>chr3A_1
ACTCCCGGGAACCAAATTGGATTTCTAAGAACAACTGCAGTTTTACAAGTCGAAACCCTTTGAAGAAAGTAAAAC---TT
TTTTTGCGGGAAACTAACCTCCTCACACCCGCTAGTAGCAGGCGACAAGGCCCACCCACACGGAAAAGGACGTCACCACA
AAAGGGACTCATCAATTCCGTCATGAGGTGTCCACTCCGGGGAATCCTCCTTGAAGATTTCTTTTCAAGAGTATGCAATC
TCGTAACATAGTTTTGTAGAAGGCAGGAAGTTATTTACAAGACAAGAGAAAACGAAAATTACACCGCCACGAAGTGGCAT
GCAACGGCTCTCCAACTCCTGCTATGTGTTTTAGGATC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTAGCATGGTTTTTGTGCACTAGTGACTCACTTA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GACAATGCTCTATGTGTTTTAGGATCCTAGCTAGGCTTTTCTGCACGAGTGACTCACTTATACAATTTTCTATGTG
TTTTACGATCCTAGCTAGCATACATTGAGGACTCCACAAG---CACT-CATGCAAGCACT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TGATACGTCTCCAACGTATCTATAATATTTGGTTATTATATTATCT----------------------
----------------------------------------------------------------------GTTTTGGATG
TTTTATATGCATTAATATGCTATTTTATATTATTTTGGGATTAACTTATTAACCCAGAGACCAGTGTCAGTTTCTATTTT
TTTTCCTTGTTTTTGAGTTTTACAAAAAAGGAATATCAAACGGAGTCCAAACGGAATAAAACTTTCGCGATGATTTTTCT
TGGACCAGAAGACACACGTAGGACTTGGAGATGAAGTCAGAGGAGTCCCGAGGTGACCACAAGCCCTCAGGGCGCACCCT
AGGGGGGCTCCCCTGGCTTGTGGCCCCGCGGGAGTCCTCTAACCCTAATTCTTGGCCTATAAATTCAGAAATATTCCCAA
ACGACTAGAAGCATCCACCAAAATACTTTTTCCGCCGTTGTAACCTTCTGTACCCGTGAGATCCCATCTTGGGACCTTTT
ACGACACTCTGCCGGAGGGGGATTCGATCACGGAGGGCTTCTACATTAACCCTATTGCCTTTCCGATGAAGCGTGATGAA
CCCAAGGTTGGTGATGGTAGTGGCGATCACGATGATACAAGCAAGAAGAGGTGCATCACCAACGAACTCCCGTCCTTCAA
TTCTACAAGACATGATTTGCATCTCCTCGAGTTCAAGAGTGGAAACCAAAAGAATGGAGATGAAGATGAGGCTGAGGTGG
AGATTCAACTAACTCAAGTGGATGGGAAGGAGACGGGTAGTCCATCCAAGAGCCGCACCACATCGTTGGAGCTAGGGGTT
GATACCTCACCTCAGCAATAGGGGCAACTATGGGGAAAGGACCAATCAGGCACATGGTGGAAGTAGTGCACTAGCCCTGA
CTATCCTGAGGCAAAATTCCGCTGCCACGTCCGGATGGGTTGGGGCACCTTTGACATGATCTGTGATGCATTGGCTTCCT
CTATTGCCAAAAAGGACACCCCACTTCGTCCTGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3B_2
-CTCTCGGGAACCAAATTGGATTTCCGACAACAACAACAATTTTACAGGTGAAGACCCTTAGAACACAGTAGAACATTTT
TTTTTGCAGGAAATTAACCTCCTCACACTCGATAGTAGCCGGCCACAAGGCCCACCCACAAGGAAAAGGACGTCACCACA
AAAGGGACTCATCAATGCCGTCGTGAGGTGTCCACTCCGGGGAATCCTCCTTGAAAATTTCTTTTCAAGAGTACGCAATC
TCATAACATAGCTTTGTAGAAGGCAGAAA-TTATTTACAAGACAAGCGAAAACGGAAATTACACCGCCATGAATTGGCAT
GCAACGGCTCTCCAACTTCTTCTAACACCTGCCGCGACTACTCACAAAATTGCTGGACTCCTGTAGCTCCAACACTAACC
CACATACGAAGTTCATAAAAATGTGAGAAGCAAGATCATGCGATGTCCGAATTATAGCTTTACCAAAAAATAAACCCATT
ACATTGGTTCCATAACATCCAACATACTAGAGTAACCATGGAGACCAAGCCTTTCCTTTCTGCCTTGGGGATCCGCTTCT
GTTTAGTGCACCACCAGTCTTCTATTCAGCAATATTGATATTACCTCCGTCAGTACCCTCTAGTCAATCATCTTGATCCT
TTAGTATTGATATTACCTCCATCGAGGGGGCCCGAATTATAGGTACAACTTGTATCTCATGTTCATCCGATGACTTGAGA
TTACACACTACCTAAGTGTGACTACCATGGTATCTGCTGAATTACCTTAATGGGTGGTTTTACTCAGTTTTACCTCCTTG
TAGATCTATACTGATGAATGTGGAAGACATTGCAATGAATATATTGGACATGGAAAACTAGGTTATGGGAGTATGGATTC
CCGCTATGTATGGTCTCTTGGCGAGAGTCATTGAGACCTTTATATAGGTCGATGATGCCAGTATCAATGTACCAACTTAT
GGGGATACAATATGATATTTTGGCGAGAGTCATTGAGACCTTTATATAGGTCGATGATGCCTGTATCGATGTAGCCAACC
TACGGGGACACATTACGGTCTAACCATGTATGATTAGCAAAGAACTCCCCTTCTGGTATCTACTCGGGAACGACTACGTG
CGACCCTAGAAGCCCTTAGTTAGACACTTGTTTGTTGATTCAGCATGTCCATGTCGCTCTTTGATAATATACCATCACTC
ACTTGACAATTCTCTATGTGTTTTAG------------------------------------------------------
--------TCCTAGCTAGCATACATTGAGGACGCCACAAGTAGCACCCCCTGCAAGCACTCACTAAATAGCCCTTCAGAT
CGAACATGAGGTAGGAGTATAGTG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTGGCACATAATTATGCCCCGTTTTATTCAGTGGCCTGACCAAACCGTCACCTTGGAGGACAACTTTAAGG
CCATCTCTGGTATCCCACACATTGTTGGTGCCATCTACACCACCCATGTCCAGATCATCCAACCGATATTGTGGGCCAGT
GATTACCTCGGTTGGGGTCCTTGCAATTACAAC---AATATCACCTACCTCTCAACCACCATCCAAGGAGTTGTCAACCC
ATTCGGCACTTTCACCGATGTA-TGCATTGGTTGCCCTGGGGCCCTGCGTGACGATGAGATCCTCTATATTTCGGGTCTA
CAACAGTGTGGAAGACCTCAGGTGATGCCTAGTTCCTGGATGGTCGGTGGCTCTAGCTACCCACTAATGGAGGGGCTTCT
CGTCCCATACCCACACC-AAACTTAACAAGGGAACAACATTCTTTCAGCAAGAAGGTCATGAAGGTTCATCGTGTGGCCG
TGGATGCCTTCGCAAGGCTCAGGGGGCGATGGGCATT-TTGCAAAAGCGCATAGATGTGAATATATCACACGTCTCTATC
GTGATCGGTGCTATATCACACGTCTCTATCGTGATCGGTGCACAGTGGCGGAGCTAGCGAGGAATGGTTGAGGGGGCAAA
TGGTGAAATATAATTTTCAGGAGGGGCCAAAAACTGTATTTCTCTCAATTTGTAGCACCCAAAAATGAGTTTCTTCACAA
AAAATCCATAGGCTGGGGAGGCCATGGCCCCTGCAGCAATACAAGTAGCTCCGCCAGTGTCGGTGCATGTTGTGTGTTGC
ACAACATATGTGAGGTCAAAGGGGACATGATGAGCCCAGAGTTGCGGTGTGATGTCATCGACTTTGAGACAC--------
-------------------------------------ACAAGGTCGTACACACACTATTCTAGTGCCTTTGGTGGCACTA
GCTTCTGATGCTCATTATCAAATTATCATTACTACCATTTTCAGCCAATTGGACAATCAGTTCACCGCTGCTCCCCCTTC
CTTCCTTGTTAATAACTTCATCTGCATTGAAACCATTCCGTTAAGGATTCCCATTTTATTTTTACTTACTCATTGCATCG
AAAGAGAGGTTTTGGTGAGGTGGTTGAGATCCCAAGACATCATGTAAAAAAGCATACCGGCGAAGAAAACATCTTCATTG
CTAT-TTTTTTTCTTGACATTGTTTGTTTTGAGATTGTTTACCACATACACCATGTGGTTATGGTTTGGTTAATTTAC--
----------------------------------------------------------ATCAAT----------------
---------------------------------------------------------------------TCGATCAATTA
GATCTGAGACATGGTTTAGTATTTCAAAAGCCCATAGTATAATTTTTACTCCCTCTTTTT-TTTTTTAACTATGCGCACA
ACCTTGGACCGGCCCAGTGCCCAGTTGGATCCCCGCGTCAGACCTGACTTTGGTCACTGACGTGTGGGCCCAGAGGAAGT
GCGTCCAGTTGGC------------------------------GGTAGGCGCTACCCTCAGTCCTCCCCGTTCCTGAACG
CCGCCGACTCGCAGGGTCGCCCCGGTCGCCACCTCCCAGATGGCCAAATCCCTAGTCCCAAAGCGTGAAGTCCTACAGAT
TCGCTGTTGGCAGCAACGCTGGGATCAGGAACTCTAGATCC---------CAGCAACTCGAGGTACG---TACATCGGCG
CCTGT-----TATCACAGCTTGCA---ACTAGGTTTTCCTTTCATCTTTAGCCAAGTCTAAAATCTGTGATGAGGATACA
TCTATCACCGTTAG--T---------------------------------------------------------------
----------------------------------------TTTTTAGGGATTGCCGATTGCAATTTGCAGCAGACAGGCA
GAGCACGCAGGGAAAGAAGGAATGGATTAGCTGCATCAGCCATCAGCCGTGCTGCATACAGATTTCAGATTTGGATCAAC
ACTCGGTTGGTACCGGCAGACATTCATAC------
>chr3A_1121
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TCTACAAGACATGATTTGCATCTCCTCGAGTTCAAGAGTGGAAACCAAAAGAATGGAGATGAACATGAGGCTGAGGTGG
AGATTTAACTAACTCAAGTGGATGGGAAGGAGACTGGTAGTCCATCCAAGAGCCCCACCACATCGTTGGAGCTAGGGGTT
GATACCTTAGCTCAGCAATAAGGGCAACTATGGGGAAATGACCAATCGGGCACATGGTGGAAGCGGTGCATTAGCCCTGA
CTACCCTGAGGCAAAATTCCGCAGCCACTTCCGGATGGGTTGGGGCACCTTTGACATGATCTGCGATGCATTGGCTTCCT
CTATTGCCAAAAAGGACACCCCACTCCGTCCTGCCATCCCCGTGCGCCAACGTGTTGCTATTTGTGTCTGGCGCCTCGCC
AATGGTGAGCCCCTCAATGTCGTCTCTCAACGCTTTGGCATTGCACTCTCTACCTGCCAAAAGATCTTTCACGAAGTTTG
TGCGGCTATCTGGCACATACTTATGCCCCGCTTTATCCAGTGGCCTGACCAGGCAATCACCTTGAAGGACGACTTTAAGG
CCATCTCTGGTATCCCAGACGTCGTTGGTGCCATCTATACCACCCATGTCCAGATCATCCAACCGATATTGTGGGCCAGT
GATTAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3A_1757
AGTGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TACCTCGGTTGGGGTCCTTACAATTACAACAGGAATAGCACCTACCTGTCAACCACCATCCAAGGAGTTGTCAACCC
ATTCGGCACTTTCACCGATGTATTGCATTGGTTGCCCTGGGGCCCTGCGTGACGATGAGATCGTCTGTATTTCGGGTCTA
CAACAGCGTGGAAGACCTCAGGTGATGCCTAGTTCCTGGGTGGTCGGTGGCTCTAGCTACCCACTAATGGAGTGGCTTCT
CGTCCCATACCCACACCAAAACTTAACAAGGGAACAACATTCTTTCAACAAGAAGGTCATGAAGGTTCATCGTGTGGTCG
TGGATGCCTTTGCAAGGCTCAGGGGGCGATGGGCATTCTTGTAAAAGCACATAGATGTGAATATCTCAAACGTCTCTATC
GTGATCGGTGCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TGTCATGTGTTGC
ACAACATATGTGAGGTCAAAGGGGAGGTGATGAGCCCATAATTGCGGTGTGATGTCATCGATTTTGAGACCGTGCCAGAG
AACCTTGTGCATTCTGAGAGCGCTAGCAAGGCCAGAGACAAGATCGCATACACACTCTTCTAGTGCATTTGGTGGCACCA
ACTTTTGATGCTCATTATCAAATTATCATTATTACCATTTTCAACCAATTGGACAATCAGTTCACCGCTCATCTCCCTTC
CTTTCTTGTTAATAACTTCATCTGCATTGAAACCATTCCGTTAAGGATTCCTATTTTATTTTTACTTACTCATTGCATCG
AAAGAGAGGTCTTGATGAGGTGGTTGAGATCCCAAGACATCATGTAAAAAAGCATACCGGCGAAGAAAACATCTCCATTG
CTATCTTTTTTTCTTGACATTATTTGTTTTGAGATTGTTTACCACATACGCCATGTGGTTCTGGTTTGCTTAATTTACAT
CAATTTGATCAAAAAAATTTAGGCTAATCAACTTTGTTTTTTGAGGTGACTGACACTAATCAAT----------------
---------------------------------------------------------------------TCGATCAATTA
GATCTGAGACAAGGTTTA---TTTGAAAAGCCCATAGTATAATTTCAATCCCTC---TTT-TTTTTTAACTATGCGCACA
ACCTTGGACCGGCCCAGTGCCCAGTTGGATCCCCGCGTTAGACCTGACTTTGGTCACTGACGTGTGGGCCCAGGGGAGCT
GCGTCCAGTTGGAGGTAGGCGGTACCCCCTTGTCTCAAAAAAAGGTAGGCGGTACCCCCAGTCCTCCCCGTTCCTGAACG
CCGCCGACTCGCAGGTTCGCCCCGGTCGCCACCTTCCAAATCCCTATT----TATTCCCAATGCGTGAAATCCTACAGAT
TCGCTGTTGGCAGCAACGCTAGAATCAGGAATTCTGAGTATATGAGATTGCAGCAACTCGAGGTACGCAATACACCGGCG
CCCGTGAGTTCATCACAGCTTGCA---ACTAGGTTTTCCTTTCATCTTTAGCCAAGTCTAAAATCTGTGA-GAAGATACA
TCTATCACAGTTACTCTCTTCGTTCGGAACTACTTGTCTCGGATATAGATGTATCTAGAACTAAAATACGTCTAGATACA
TCCATTTCCGCGACAAGTAATTCCGAACGGAGGGAGTAGATTTTTAGGGATTGTCGATTGCAATTTGCAGCAGACGGGCA
GAGCACGCATGGAAAGAAGGGATAGGTTAGCTGCATCAGCCATCACCCGTACGTACTGCATA---CAGATTTGGATCAAC
ACT-GGTTGGTACCGGCAAGATATTCATACCAACA
>SNPs
--------S--------------------------------------------------S--------------------
-----------------------S-----------------------------S------S-------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------SS-------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------S-----S-----------------------
-----S---------S------------------------S---------------------------------------
---------S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S-SSSS--SS-S-SS--SS-S----S-S------SSS--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S---S---S
S-----S-SSS-----S-SS-SSSS----SS-S-SSSSSS-SSSSSSSS-SSSSS--SS-SSSS-S-SSSSSSSSSSS--
S--S--S-SSSS-SSSSSSS--SSSSSSSSSSS-SS-SSS-SS--S-SS-SSSSS-S-SSS-S-SSSSSSSSSSSSSS-S
-S--S-SS------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S----S-----------S----S---------------------------------S-----------------
---------------------------------------------------------------------S--S-------
---------------------------------------S--------------------S----------S------S-
--------------S---S---------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------------------S---------------------------------------------------S
-S-------------S----S---------------------------------S---S---------------------
---S------------------------------------------------------S---------------------
-------S------------------------------------------------------------------------
----------S----------------------------------------------------------------S----
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------S-----------------------------------------------------------
--------------------S---------------------S--------------S----------------------
------------------------------------S--------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
--------------------------------------------S---------------S-------------------
--------S------------S----------------------------------------------------------
------------------------------------------------------S-----------------------S-
--------------------------------------------------------------------------------
--------SS---------------------------------------------S------------------------
------------------S-----SSS-----------S--------------------------------S--------
--S------------S----------------------------------------------------------------
--------------------------------------------------------------------------SSSSSS
------------------------S---------------------------------S------SSSSSSS--------
-------------------S---------------
>forward_1637
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CGTGTTGTCCCGTCCAAAAC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_2956
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GACCC
ATTCGGCACTTTCAC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1842
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ATCGCACCAACGGGAACA
TA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_3082
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGTCGGTGGCTCTAGCTACC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_2695
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGGCATTGCACTCTCTACCC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_4536
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------GCTCGAGGTACGTACATCGG-----
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-----------------------------------
