Multiple sequence alignment - TraesCS3D01G316500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G316500 chr3D 100.000 2394 0 0 1 2394 429636289 429638682 0.000000e+00 4421.0
1 TraesCS3D01G316500 chr3D 82.466 884 84 44 597 1449 429647108 429647951 0.000000e+00 708.0
2 TraesCS3D01G316500 chr3D 83.565 432 51 12 968 1397 428994406 428993993 1.040000e-103 387.0
3 TraesCS3D01G316500 chr3D 82.380 437 53 16 971 1395 429085748 429085324 2.260000e-95 359.0
4 TraesCS3D01G316500 chr3D 84.568 162 17 4 1527 1686 429648116 429648271 1.150000e-33 154.0
5 TraesCS3D01G316500 chr3A 90.154 1300 63 25 402 1674 556354554 556353293 0.000000e+00 1631.0
6 TraesCS3D01G316500 chr3A 88.567 1172 73 24 557 1686 556341087 556339935 0.000000e+00 1365.0
7 TraesCS3D01G316500 chr3A 80.144 1108 124 61 622 1686 556261230 556260176 0.000000e+00 739.0
8 TraesCS3D01G316500 chr3A 81.996 461 46 21 966 1397 556678410 556678862 8.140000e-95 357.0
9 TraesCS3D01G316500 chr3A 90.446 157 13 1 1686 1840 468519188 468519344 3.120000e-49 206.0
10 TraesCS3D01G316500 chr3B 91.263 1156 57 19 557 1686 561840358 561841495 0.000000e+00 1535.0
11 TraesCS3D01G316500 chr3B 91.010 1079 51 16 557 1612 561592159 561593214 0.000000e+00 1413.0
12 TraesCS3D01G316500 chr3B 81.372 1079 117 54 622 1666 561888827 561889855 0.000000e+00 802.0
13 TraesCS3D01G316500 chr3B 84.491 432 53 9 968 1397 561039116 561038697 4.760000e-112 414.0
14 TraesCS3D01G316500 chr3B 82.313 441 48 13 978 1395 561044756 561044323 2.930000e-94 355.0
15 TraesCS3D01G316500 chr3B 85.612 139 18 2 1686 1822 669758724 669758862 6.900000e-31 145.0
16 TraesCS3D01G316500 chr4D 91.983 711 50 4 1686 2393 61442545 61443251 0.000000e+00 990.0
17 TraesCS3D01G316500 chr4D 91.421 711 52 5 1686 2393 61493767 61494471 0.000000e+00 966.0
18 TraesCS3D01G316500 chr4D 96.532 346 11 1 1 345 40896196 40896541 2.670000e-159 571.0
19 TraesCS3D01G316500 chr4D 96.275 349 12 1 1 348 340698445 340698097 2.670000e-159 571.0
20 TraesCS3D01G316500 chr6D 97.118 347 9 1 1 346 352086401 352086747 3.430000e-163 584.0
21 TraesCS3D01G316500 chr6D 96.532 346 11 1 1 345 319580825 319581170 2.670000e-159 571.0
22 TraesCS3D01G316500 chr6D 96.275 349 12 1 1 348 369886826 369887174 2.670000e-159 571.0
23 TraesCS3D01G316500 chr6D 96.532 346 11 1 1 345 453134477 453134822 2.670000e-159 571.0
24 TraesCS3D01G316500 chr1A 97.118 347 9 1 1 346 147500062 147500408 3.430000e-163 584.0
25 TraesCS3D01G316500 chr7D 96.821 346 10 1 1 345 197556562 197556907 5.740000e-161 577.0
26 TraesCS3D01G316500 chr5D 96.562 349 9 2 1 348 500782187 500781841 2.060000e-160 575.0
27 TraesCS3D01G316500 chr7A 87.770 139 15 1 1685 1821 649086324 649086186 6.850000e-36 161.0
28 TraesCS3D01G316500 chr2A 87.681 138 15 1 1686 1821 713507529 713507666 2.460000e-35 159.0
29 TraesCS3D01G316500 chr2A 94.595 37 2 0 1680 1716 85281045 85281081 9.240000e-05 58.4
30 TraesCS3D01G316500 chr4B 83.562 146 23 1 1687 1831 596790084 596789939 4.150000e-28 135.0
31 TraesCS3D01G316500 chr2B 100.000 32 0 0 1685 1716 782541417 782541386 2.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G316500 chr3D 429636289 429638682 2393 False 4421 4421 100.000 1 2394 1 chr3D.!!$F1 2393
1 TraesCS3D01G316500 chr3D 429647108 429648271 1163 False 431 708 83.517 597 1686 2 chr3D.!!$F2 1089
2 TraesCS3D01G316500 chr3A 556353293 556354554 1261 True 1631 1631 90.154 402 1674 1 chr3A.!!$R3 1272
3 TraesCS3D01G316500 chr3A 556339935 556341087 1152 True 1365 1365 88.567 557 1686 1 chr3A.!!$R2 1129
4 TraesCS3D01G316500 chr3A 556260176 556261230 1054 True 739 739 80.144 622 1686 1 chr3A.!!$R1 1064
5 TraesCS3D01G316500 chr3B 561840358 561841495 1137 False 1535 1535 91.263 557 1686 1 chr3B.!!$F2 1129
6 TraesCS3D01G316500 chr3B 561592159 561593214 1055 False 1413 1413 91.010 557 1612 1 chr3B.!!$F1 1055
7 TraesCS3D01G316500 chr3B 561888827 561889855 1028 False 802 802 81.372 622 1666 1 chr3B.!!$F3 1044
8 TraesCS3D01G316500 chr4D 61442545 61443251 706 False 990 990 91.983 1686 2393 1 chr4D.!!$F2 707
9 TraesCS3D01G316500 chr4D 61493767 61494471 704 False 966 966 91.421 1686 2393 1 chr4D.!!$F3 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 489 0.03213 GACTGAACTGCACTGACCGA 59.968 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 2601 0.740737 GTCAAGCACAACTGGCAAGT 59.259 50.0 0.0 0.0 38.71 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.340928 GGGTGCTTGGATACGTTTTAGT 58.659 45.455 0.00 0.00 42.51 2.24
22 23 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
23 24 4.251268 GGTGCTTGGATACGTTTTAGTCT 58.749 43.478 0.00 0.00 42.51 3.24
24 25 4.329256 GGTGCTTGGATACGTTTTAGTCTC 59.671 45.833 0.00 0.00 42.51 3.36
25 26 4.927425 GTGCTTGGATACGTTTTAGTCTCA 59.073 41.667 0.00 0.00 42.51 3.27
26 27 5.581085 GTGCTTGGATACGTTTTAGTCTCAT 59.419 40.000 0.00 0.00 42.51 2.90
27 28 5.580691 TGCTTGGATACGTTTTAGTCTCATG 59.419 40.000 0.00 0.00 42.51 3.07
28 29 5.810587 GCTTGGATACGTTTTAGTCTCATGA 59.189 40.000 0.00 0.00 42.51 3.07
29 30 6.237861 GCTTGGATACGTTTTAGTCTCATGAC 60.238 42.308 0.00 0.00 41.21 3.06
31 32 7.634671 TGGATACGTTTTAGTCTCATGACTA 57.365 36.000 0.00 2.20 46.46 2.59
43 44 6.282199 GTCTCATGACTAAAAGTAGTGGGA 57.718 41.667 0.00 0.00 40.82 4.37
44 45 6.100668 GTCTCATGACTAAAAGTAGTGGGAC 58.899 44.000 0.00 7.84 40.82 4.46
45 46 6.017192 TCTCATGACTAAAAGTAGTGGGACT 58.983 40.000 0.00 0.00 40.82 3.85
46 47 7.122353 GTCTCATGACTAAAAGTAGTGGGACTA 59.878 40.741 13.07 0.00 40.82 2.59
47 48 7.672660 TCTCATGACTAAAAGTAGTGGGACTAA 59.327 37.037 0.00 0.00 40.82 2.24
48 49 8.197592 TCATGACTAAAAGTAGTGGGACTAAA 57.802 34.615 0.00 0.00 40.82 1.85
49 50 8.653191 TCATGACTAAAAGTAGTGGGACTAAAA 58.347 33.333 0.00 0.00 40.82 1.52
50 51 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
51 52 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
52 53 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
53 54 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
54 55 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
55 56 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
56 57 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
57 58 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
58 59 3.676093 AGTGGGACTAAAACTTGCTAGC 58.324 45.455 8.10 8.10 0.00 3.42
59 60 2.747989 GTGGGACTAAAACTTGCTAGCC 59.252 50.000 13.29 0.00 0.00 3.93
60 61 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
61 62 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
62 63 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
63 64 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
64 65 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
65 66 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
66 67 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
67 68 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
68 69 0.254178 ACTTGCTAGCCTCACCCATG 59.746 55.000 13.29 0.00 0.00 3.66
69 70 1.077501 TTGCTAGCCTCACCCATGC 60.078 57.895 13.29 0.00 0.00 4.06
70 71 1.565390 TTGCTAGCCTCACCCATGCT 61.565 55.000 13.29 0.00 39.10 3.79
71 72 1.225704 GCTAGCCTCACCCATGCTT 59.774 57.895 2.29 0.00 36.57 3.91
72 73 1.099879 GCTAGCCTCACCCATGCTTG 61.100 60.000 2.29 0.00 36.57 4.01
73 74 0.543277 CTAGCCTCACCCATGCTTGA 59.457 55.000 0.22 0.00 36.57 3.02
74 75 0.991146 TAGCCTCACCCATGCTTGAA 59.009 50.000 0.22 0.00 36.57 2.69
75 76 0.333993 AGCCTCACCCATGCTTGAAT 59.666 50.000 0.22 0.00 29.17 2.57
76 77 0.743097 GCCTCACCCATGCTTGAATC 59.257 55.000 0.22 0.00 0.00 2.52
77 78 1.396653 CCTCACCCATGCTTGAATCC 58.603 55.000 0.22 0.00 0.00 3.01
78 79 1.341285 CCTCACCCATGCTTGAATCCA 60.341 52.381 0.22 0.00 0.00 3.41
79 80 2.449464 CTCACCCATGCTTGAATCCAA 58.551 47.619 0.22 0.00 0.00 3.53
130 131 9.866655 TTATGAGCATTTATTATCCTCCAAACT 57.133 29.630 0.00 0.00 0.00 2.66
131 132 7.807977 TGAGCATTTATTATCCTCCAAACTC 57.192 36.000 0.00 0.00 0.00 3.01
132 133 7.577303 TGAGCATTTATTATCCTCCAAACTCT 58.423 34.615 0.00 0.00 0.00 3.24
133 134 7.716998 TGAGCATTTATTATCCTCCAAACTCTC 59.283 37.037 0.00 0.00 0.00 3.20
134 135 7.001073 AGCATTTATTATCCTCCAAACTCTCC 58.999 38.462 0.00 0.00 0.00 3.71
135 136 6.772716 GCATTTATTATCCTCCAAACTCTCCA 59.227 38.462 0.00 0.00 0.00 3.86
136 137 7.285401 GCATTTATTATCCTCCAAACTCTCCAA 59.715 37.037 0.00 0.00 0.00 3.53
137 138 9.359653 CATTTATTATCCTCCAAACTCTCCAAT 57.640 33.333 0.00 0.00 0.00 3.16
138 139 8.980481 TTTATTATCCTCCAAACTCTCCAATC 57.020 34.615 0.00 0.00 0.00 2.67
139 140 3.941704 ATCCTCCAAACTCTCCAATCC 57.058 47.619 0.00 0.00 0.00 3.01
140 141 2.631384 TCCTCCAAACTCTCCAATCCA 58.369 47.619 0.00 0.00 0.00 3.41
141 142 2.573462 TCCTCCAAACTCTCCAATCCAG 59.427 50.000 0.00 0.00 0.00 3.86
142 143 2.573462 CCTCCAAACTCTCCAATCCAGA 59.427 50.000 0.00 0.00 0.00 3.86
143 144 3.009473 CCTCCAAACTCTCCAATCCAGAA 59.991 47.826 0.00 0.00 0.00 3.02
144 145 4.006319 CTCCAAACTCTCCAATCCAGAAC 58.994 47.826 0.00 0.00 0.00 3.01
145 146 3.652869 TCCAAACTCTCCAATCCAGAACT 59.347 43.478 0.00 0.00 0.00 3.01
146 147 4.006319 CCAAACTCTCCAATCCAGAACTC 58.994 47.826 0.00 0.00 0.00 3.01
147 148 3.601443 AACTCTCCAATCCAGAACTCG 57.399 47.619 0.00 0.00 0.00 4.18
148 149 1.205893 ACTCTCCAATCCAGAACTCGC 59.794 52.381 0.00 0.00 0.00 5.03
149 150 0.537188 TCTCCAATCCAGAACTCGCC 59.463 55.000 0.00 0.00 0.00 5.54
150 151 0.462759 CTCCAATCCAGAACTCGCCC 60.463 60.000 0.00 0.00 0.00 6.13
151 152 1.815421 CCAATCCAGAACTCGCCCG 60.815 63.158 0.00 0.00 0.00 6.13
152 153 1.079127 CAATCCAGAACTCGCCCGT 60.079 57.895 0.00 0.00 0.00 5.28
153 154 1.079127 AATCCAGAACTCGCCCGTG 60.079 57.895 0.00 0.00 0.00 4.94
154 155 1.827399 AATCCAGAACTCGCCCGTGT 61.827 55.000 0.00 0.00 0.00 4.49
155 156 1.827399 ATCCAGAACTCGCCCGTGTT 61.827 55.000 7.71 7.71 34.99 3.32
156 157 1.180456 TCCAGAACTCGCCCGTGTTA 61.180 55.000 7.93 0.00 32.85 2.41
157 158 0.320073 CCAGAACTCGCCCGTGTTAA 60.320 55.000 7.93 0.00 32.85 2.01
158 159 1.504359 CAGAACTCGCCCGTGTTAAA 58.496 50.000 7.93 0.00 32.85 1.52
159 160 1.868498 CAGAACTCGCCCGTGTTAAAA 59.132 47.619 7.93 0.00 32.85 1.52
160 161 2.096417 CAGAACTCGCCCGTGTTAAAAG 60.096 50.000 7.93 0.00 32.85 2.27
161 162 2.137523 GAACTCGCCCGTGTTAAAAGA 58.862 47.619 7.93 0.00 32.85 2.52
162 163 1.792006 ACTCGCCCGTGTTAAAAGAG 58.208 50.000 0.00 0.00 0.00 2.85
163 164 1.342174 ACTCGCCCGTGTTAAAAGAGA 59.658 47.619 0.00 0.00 0.00 3.10
164 165 1.993370 CTCGCCCGTGTTAAAAGAGAG 59.007 52.381 0.00 0.00 0.00 3.20
165 166 1.076332 CGCCCGTGTTAAAAGAGAGG 58.924 55.000 0.00 0.00 0.00 3.69
166 167 1.337447 CGCCCGTGTTAAAAGAGAGGA 60.337 52.381 0.00 0.00 0.00 3.71
167 168 2.347731 GCCCGTGTTAAAAGAGAGGAG 58.652 52.381 0.00 0.00 0.00 3.69
168 169 2.289506 GCCCGTGTTAAAAGAGAGGAGT 60.290 50.000 0.00 0.00 0.00 3.85
169 170 3.806157 GCCCGTGTTAAAAGAGAGGAGTT 60.806 47.826 0.00 0.00 0.00 3.01
170 171 4.562143 GCCCGTGTTAAAAGAGAGGAGTTA 60.562 45.833 0.00 0.00 0.00 2.24
171 172 5.544650 CCCGTGTTAAAAGAGAGGAGTTAA 58.455 41.667 0.00 0.00 0.00 2.01
172 173 5.993441 CCCGTGTTAAAAGAGAGGAGTTAAA 59.007 40.000 0.00 0.00 0.00 1.52
173 174 6.653740 CCCGTGTTAAAAGAGAGGAGTTAAAT 59.346 38.462 0.00 0.00 0.00 1.40
174 175 7.360946 CCCGTGTTAAAAGAGAGGAGTTAAATG 60.361 40.741 0.00 0.00 0.00 2.32
175 176 7.386848 CCGTGTTAAAAGAGAGGAGTTAAATGA 59.613 37.037 0.00 0.00 0.00 2.57
176 177 8.436200 CGTGTTAAAAGAGAGGAGTTAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
177 178 8.722394 GTGTTAAAAGAGAGGAGTTAAATGAGG 58.278 37.037 0.00 0.00 0.00 3.86
178 179 8.656806 TGTTAAAAGAGAGGAGTTAAATGAGGA 58.343 33.333 0.00 0.00 0.00 3.71
179 180 9.157104 GTTAAAAGAGAGGAGTTAAATGAGGAG 57.843 37.037 0.00 0.00 0.00 3.69
180 181 7.560796 AAAAGAGAGGAGTTAAATGAGGAGA 57.439 36.000 0.00 0.00 0.00 3.71
181 182 6.790232 AAGAGAGGAGTTAAATGAGGAGAG 57.210 41.667 0.00 0.00 0.00 3.20
182 183 6.086011 AGAGAGGAGTTAAATGAGGAGAGA 57.914 41.667 0.00 0.00 0.00 3.10
183 184 6.129179 AGAGAGGAGTTAAATGAGGAGAGAG 58.871 44.000 0.00 0.00 0.00 3.20
184 185 6.069088 AGAGAGGAGTTAAATGAGGAGAGAGA 60.069 42.308 0.00 0.00 0.00 3.10
185 186 6.129179 AGAGGAGTTAAATGAGGAGAGAGAG 58.871 44.000 0.00 0.00 0.00 3.20
186 187 5.208121 AGGAGTTAAATGAGGAGAGAGAGG 58.792 45.833 0.00 0.00 0.00 3.69
187 188 5.043732 AGGAGTTAAATGAGGAGAGAGAGGA 60.044 44.000 0.00 0.00 0.00 3.71
188 189 5.068591 GGAGTTAAATGAGGAGAGAGAGGAC 59.931 48.000 0.00 0.00 0.00 3.85
189 190 5.837829 AGTTAAATGAGGAGAGAGAGGACT 58.162 41.667 0.00 0.00 0.00 3.85
190 191 6.975949 AGTTAAATGAGGAGAGAGAGGACTA 58.024 40.000 0.00 0.00 0.00 2.59
191 192 7.415086 AGTTAAATGAGGAGAGAGAGGACTAA 58.585 38.462 0.00 0.00 0.00 2.24
192 193 8.065007 AGTTAAATGAGGAGAGAGAGGACTAAT 58.935 37.037 0.00 0.00 0.00 1.73
193 194 6.976934 AAATGAGGAGAGAGAGGACTAATC 57.023 41.667 0.00 0.00 0.00 1.75
194 195 4.447138 TGAGGAGAGAGAGGACTAATCC 57.553 50.000 0.00 0.00 46.69 3.01
209 210 6.296803 GGACTAATCCACATTTTAGTAGGGG 58.703 44.000 0.00 0.00 45.47 4.79
210 211 6.126565 GGACTAATCCACATTTTAGTAGGGGT 60.127 42.308 0.00 0.00 45.47 4.95
211 212 7.071572 GGACTAATCCACATTTTAGTAGGGGTA 59.928 40.741 0.00 0.00 45.47 3.69
212 213 7.799081 ACTAATCCACATTTTAGTAGGGGTAC 58.201 38.462 0.00 0.00 36.99 3.34
213 214 7.147426 ACTAATCCACATTTTAGTAGGGGTACC 60.147 40.741 2.17 2.17 41.38 3.34
233 234 8.489990 GGTACCCTGACTAGAAAATTTTAGTC 57.510 38.462 20.08 20.08 43.80 2.59
234 235 8.319881 GGTACCCTGACTAGAAAATTTTAGTCT 58.680 37.037 24.24 13.26 43.85 3.24
235 236 9.368674 GTACCCTGACTAGAAAATTTTAGTCTC 57.631 37.037 24.24 11.11 43.85 3.36
236 237 7.974504 ACCCTGACTAGAAAATTTTAGTCTCA 58.025 34.615 24.24 13.97 43.85 3.27
237 238 8.437575 ACCCTGACTAGAAAATTTTAGTCTCAA 58.562 33.333 24.24 11.24 43.85 3.02
238 239 8.940952 CCCTGACTAGAAAATTTTAGTCTCAAG 58.059 37.037 24.24 17.04 43.85 3.02
239 240 9.712305 CCTGACTAGAAAATTTTAGTCTCAAGA 57.288 33.333 24.24 10.73 43.85 3.02
253 254 4.505808 GTCTCAAGACTAGTTTTAGCCCC 58.494 47.826 0.00 0.00 41.65 5.80
254 255 4.223255 GTCTCAAGACTAGTTTTAGCCCCT 59.777 45.833 0.00 0.00 41.65 4.79
255 256 4.466726 TCTCAAGACTAGTTTTAGCCCCTC 59.533 45.833 0.00 0.00 0.00 4.30
256 257 4.426704 TCAAGACTAGTTTTAGCCCCTCT 58.573 43.478 0.00 0.00 0.00 3.69
257 258 4.844655 TCAAGACTAGTTTTAGCCCCTCTT 59.155 41.667 0.00 0.00 0.00 2.85
258 259 5.309806 TCAAGACTAGTTTTAGCCCCTCTTT 59.690 40.000 0.00 0.00 0.00 2.52
259 260 6.499350 TCAAGACTAGTTTTAGCCCCTCTTTA 59.501 38.462 0.00 0.00 0.00 1.85
260 261 6.547930 AGACTAGTTTTAGCCCCTCTTTAG 57.452 41.667 0.00 0.00 0.00 1.85
261 262 6.024247 AGACTAGTTTTAGCCCCTCTTTAGT 58.976 40.000 0.00 0.00 0.00 2.24
262 263 6.154877 AGACTAGTTTTAGCCCCTCTTTAGTC 59.845 42.308 0.00 0.00 36.42 2.59
263 264 5.783875 ACTAGTTTTAGCCCCTCTTTAGTCA 59.216 40.000 0.00 0.00 0.00 3.41
264 265 5.167303 AGTTTTAGCCCCTCTTTAGTCAG 57.833 43.478 0.00 0.00 0.00 3.51
265 266 4.019231 AGTTTTAGCCCCTCTTTAGTCAGG 60.019 45.833 0.00 0.00 0.00 3.86
270 271 0.253327 CCCTCTTTAGTCAGGGGTGC 59.747 60.000 0.00 0.00 45.39 5.01
271 272 1.280457 CCTCTTTAGTCAGGGGTGCT 58.720 55.000 0.00 0.00 28.24 4.40
272 273 1.630878 CCTCTTTAGTCAGGGGTGCTT 59.369 52.381 0.00 0.00 28.24 3.91
273 274 2.616510 CCTCTTTAGTCAGGGGTGCTTG 60.617 54.545 0.00 0.00 28.24 4.01
274 275 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
275 276 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
276 277 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
277 278 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
278 279 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
279 280 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
280 281 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
281 282 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
282 283 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
283 284 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
284 285 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
285 286 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
286 287 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
287 288 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
288 289 3.149981 GTGCTTGGAACTTTAGCCTCTT 58.850 45.455 0.00 0.00 34.03 2.85
289 290 4.324267 GTGCTTGGAACTTTAGCCTCTTA 58.676 43.478 0.00 0.00 34.03 2.10
290 291 4.760204 GTGCTTGGAACTTTAGCCTCTTAA 59.240 41.667 0.00 0.00 34.03 1.85
291 292 5.240844 GTGCTTGGAACTTTAGCCTCTTAAA 59.759 40.000 0.00 0.00 34.03 1.52
292 293 5.473504 TGCTTGGAACTTTAGCCTCTTAAAG 59.526 40.000 4.46 4.46 43.21 1.85
293 294 5.705905 GCTTGGAACTTTAGCCTCTTAAAGA 59.294 40.000 11.30 0.00 41.17 2.52
294 295 6.128145 GCTTGGAACTTTAGCCTCTTAAAGAG 60.128 42.308 11.30 0.56 41.17 2.85
295 296 6.681729 TGGAACTTTAGCCTCTTAAAGAGA 57.318 37.500 11.30 0.00 45.07 3.10
296 297 6.465084 TGGAACTTTAGCCTCTTAAAGAGAC 58.535 40.000 11.30 0.00 45.07 3.36
297 298 6.270231 TGGAACTTTAGCCTCTTAAAGAGACT 59.730 38.462 11.30 1.37 45.07 3.24
298 299 7.453752 TGGAACTTTAGCCTCTTAAAGAGACTA 59.546 37.037 11.30 0.40 45.07 2.59
299 300 8.479689 GGAACTTTAGCCTCTTAAAGAGACTAT 58.520 37.037 11.30 0.00 45.07 2.12
300 301 9.878667 GAACTTTAGCCTCTTAAAGAGACTATT 57.121 33.333 11.30 0.00 45.07 1.73
307 308 9.878667 AGCCTCTTAAAGAGACTATTTTTAGTC 57.121 33.333 0.00 5.24 45.07 2.59
308 309 9.654663 GCCTCTTAAAGAGACTATTTTTAGTCA 57.345 33.333 13.86 0.00 45.07 3.41
327 328 9.720769 TTTAGTCAGACTAAAATAAGTCCCTTG 57.279 33.333 26.93 0.00 44.84 3.61
328 329 6.712276 AGTCAGACTAAAATAAGTCCCTTGG 58.288 40.000 0.00 0.00 45.86 3.61
329 330 6.500751 AGTCAGACTAAAATAAGTCCCTTGGA 59.499 38.462 0.00 0.00 45.86 3.53
330 331 7.182930 AGTCAGACTAAAATAAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.86 3.41
331 332 7.496263 GTCAGACTAAAATAAGTCCCTTGGATC 59.504 40.741 0.00 0.00 45.86 3.36
332 333 6.768381 CAGACTAAAATAAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.86 3.36
333 334 6.447084 AGACTAAAATAAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.86 3.41
334 335 7.036863 AGACTAAAATAAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.86 3.53
335 336 7.283354 GACTAAAATAAGTCCCTTGGATCCAAG 59.717 40.741 37.68 37.68 42.72 3.61
342 343 3.181526 CTTGGATCCAAGCACCCTC 57.818 57.895 35.47 0.00 45.38 4.30
343 344 0.622665 CTTGGATCCAAGCACCCTCT 59.377 55.000 35.47 0.00 45.38 3.69
344 345 1.005215 CTTGGATCCAAGCACCCTCTT 59.995 52.381 35.47 0.00 45.38 2.85
345 346 1.965414 TGGATCCAAGCACCCTCTTA 58.035 50.000 13.46 0.00 0.00 2.10
346 347 1.839994 TGGATCCAAGCACCCTCTTAG 59.160 52.381 13.46 0.00 0.00 2.18
347 348 1.840635 GGATCCAAGCACCCTCTTAGT 59.159 52.381 6.95 0.00 0.00 2.24
348 349 2.239907 GGATCCAAGCACCCTCTTAGTT 59.760 50.000 6.95 0.00 0.00 2.24
349 350 2.859165 TCCAAGCACCCTCTTAGTTG 57.141 50.000 0.00 0.00 0.00 3.16
350 351 2.334977 TCCAAGCACCCTCTTAGTTGA 58.665 47.619 0.00 0.00 0.00 3.18
351 352 2.708861 TCCAAGCACCCTCTTAGTTGAA 59.291 45.455 0.00 0.00 0.00 2.69
352 353 3.077359 CCAAGCACCCTCTTAGTTGAAG 58.923 50.000 0.00 0.00 36.38 3.02
353 354 3.244561 CCAAGCACCCTCTTAGTTGAAGA 60.245 47.826 0.00 0.00 42.13 2.87
354 355 4.389374 CAAGCACCCTCTTAGTTGAAGAA 58.611 43.478 0.00 0.00 43.75 2.52
355 356 4.706842 AGCACCCTCTTAGTTGAAGAAA 57.293 40.909 0.00 0.00 43.75 2.52
356 357 5.248380 AGCACCCTCTTAGTTGAAGAAAT 57.752 39.130 0.00 0.00 43.75 2.17
357 358 5.635120 AGCACCCTCTTAGTTGAAGAAATT 58.365 37.500 0.00 0.00 43.75 1.82
358 359 5.474876 AGCACCCTCTTAGTTGAAGAAATTG 59.525 40.000 0.00 0.00 43.75 2.32
359 360 5.703876 CACCCTCTTAGTTGAAGAAATTGC 58.296 41.667 0.00 0.00 43.75 3.56
360 361 5.241506 CACCCTCTTAGTTGAAGAAATTGCA 59.758 40.000 0.00 0.00 43.75 4.08
361 362 6.012745 ACCCTCTTAGTTGAAGAAATTGCAT 58.987 36.000 0.00 0.00 43.75 3.96
362 363 6.071728 ACCCTCTTAGTTGAAGAAATTGCATG 60.072 38.462 0.00 0.00 43.75 4.06
363 364 6.071728 CCCTCTTAGTTGAAGAAATTGCATGT 60.072 38.462 0.00 0.00 43.75 3.21
364 365 7.025963 CCTCTTAGTTGAAGAAATTGCATGTC 58.974 38.462 0.00 0.00 43.75 3.06
365 366 7.308770 CCTCTTAGTTGAAGAAATTGCATGTCA 60.309 37.037 0.00 0.00 43.75 3.58
366 367 7.939782 TCTTAGTTGAAGAAATTGCATGTCAA 58.060 30.769 5.27 5.27 41.39 3.18
367 368 8.579006 TCTTAGTTGAAGAAATTGCATGTCAAT 58.421 29.630 8.87 8.87 41.89 2.57
375 376 3.940209 ATTGCATGTCAATTTGACCGT 57.060 38.095 23.22 11.69 46.40 4.83
376 377 3.724508 TTGCATGTCAATTTGACCGTT 57.275 38.095 23.22 8.54 46.40 4.44
377 378 3.281341 TGCATGTCAATTTGACCGTTC 57.719 42.857 23.22 12.15 46.40 3.95
378 379 2.241722 GCATGTCAATTTGACCGTTCG 58.758 47.619 23.22 10.44 46.40 3.95
379 380 2.241722 CATGTCAATTTGACCGTTCGC 58.758 47.619 23.22 1.21 46.40 4.70
380 381 1.588674 TGTCAATTTGACCGTTCGCT 58.411 45.000 23.22 0.00 46.40 4.93
381 382 1.262950 TGTCAATTTGACCGTTCGCTG 59.737 47.619 23.22 0.00 46.40 5.18
382 383 1.529438 GTCAATTTGACCGTTCGCTGA 59.471 47.619 17.07 0.00 41.37 4.26
383 384 2.032377 GTCAATTTGACCGTTCGCTGAA 60.032 45.455 17.07 0.00 41.37 3.02
384 385 2.614520 TCAATTTGACCGTTCGCTGAAA 59.385 40.909 0.00 0.00 0.00 2.69
385 386 3.065510 TCAATTTGACCGTTCGCTGAAAA 59.934 39.130 0.00 0.00 0.00 2.29
386 387 3.701532 ATTTGACCGTTCGCTGAAAAA 57.298 38.095 0.00 0.00 0.00 1.94
424 425 5.183713 TGTTCTCCTGCATGGTATGAAAAAG 59.816 40.000 0.00 0.00 37.07 2.27
428 429 6.493115 TCTCCTGCATGGTATGAAAAAGAAAA 59.507 34.615 0.00 0.00 37.07 2.29
430 431 7.322664 TCCTGCATGGTATGAAAAAGAAAATC 58.677 34.615 0.00 0.00 37.07 2.17
435 436 7.701924 GCATGGTATGAAAAAGAAAATCATCGA 59.298 33.333 0.00 0.00 35.53 3.59
442 443 7.684670 TGAAAAAGAAAATCATCGAGGATACG 58.315 34.615 13.70 0.00 46.39 3.06
454 455 6.377712 TCATCGAGGATACGAGATCTAGAGTA 59.622 42.308 10.07 8.50 45.22 2.59
465 466 6.707161 ACGAGATCTAGAGTAACTGATACACC 59.293 42.308 10.07 0.00 36.94 4.16
469 470 5.366460 TCTAGAGTAACTGATACACCGGAG 58.634 45.833 9.46 1.26 36.94 4.63
488 489 0.032130 GACTGAACTGCACTGACCGA 59.968 55.000 0.00 0.00 0.00 4.69
614 615 4.293415 CAACATGGAGCAAGACAGTTTTC 58.707 43.478 0.00 0.00 0.00 2.29
615 616 3.554934 ACATGGAGCAAGACAGTTTTCA 58.445 40.909 0.00 0.00 0.00 2.69
616 617 3.567164 ACATGGAGCAAGACAGTTTTCAG 59.433 43.478 0.00 0.00 0.00 3.02
617 618 3.558931 TGGAGCAAGACAGTTTTCAGA 57.441 42.857 0.00 0.00 0.00 3.27
663 677 3.495753 GTGTAAAATATTAGGCCCGGTCG 59.504 47.826 0.00 0.00 0.00 4.79
901 936 2.033492 CGTTACGCTATAAAAAGGGCCG 60.033 50.000 0.00 0.00 32.92 6.13
902 937 3.197265 GTTACGCTATAAAAAGGGCCGA 58.803 45.455 0.00 0.00 32.92 5.54
907 942 2.847441 CTATAAAAAGGGCCGAGGACC 58.153 52.381 5.71 5.71 45.79 4.46
913 948 3.081409 GGGCCGAGGACCAAGCTA 61.081 66.667 9.64 0.00 44.50 3.32
927 974 2.477825 CAAGCTATCTCATCACCACCG 58.522 52.381 0.00 0.00 0.00 4.94
1357 1473 0.603569 ACTGCGTCAGGATCTTCGTT 59.396 50.000 10.80 0.00 35.51 3.85
1407 1528 1.702491 GCCTAACACGCCGTTGGATC 61.702 60.000 3.61 0.00 38.30 3.36
1408 1529 0.390603 CCTAACACGCCGTTGGATCA 60.391 55.000 3.61 0.00 38.30 2.92
1409 1530 1.651987 CTAACACGCCGTTGGATCAT 58.348 50.000 0.00 0.00 38.30 2.45
1410 1531 1.327460 CTAACACGCCGTTGGATCATG 59.673 52.381 0.00 0.00 38.30 3.07
1411 1532 1.305219 AACACGCCGTTGGATCATGG 61.305 55.000 0.00 0.00 36.12 3.66
1412 1533 1.449423 CACGCCGTTGGATCATGGA 60.449 57.895 0.00 0.00 0.00 3.41
1413 1534 0.815213 CACGCCGTTGGATCATGGAT 60.815 55.000 0.00 0.00 0.00 3.41
1582 1821 2.288666 GTCACTCTGTCTTTGTGCCAA 58.711 47.619 0.00 0.00 0.00 4.52
1603 1843 6.493978 CCAACTTTGGCTTAAAAATTGGTTG 58.506 36.000 10.24 9.05 42.21 3.77
1625 1865 6.569179 TGAGTTGGTTTAAGCTTGATTACC 57.431 37.500 9.86 7.19 0.00 2.85
1626 1866 6.065374 TGAGTTGGTTTAAGCTTGATTACCA 58.935 36.000 9.86 9.95 34.08 3.25
1627 1867 6.206634 TGAGTTGGTTTAAGCTTGATTACCAG 59.793 38.462 9.86 0.00 37.03 4.00
1628 1868 6.068670 AGTTGGTTTAAGCTTGATTACCAGT 58.931 36.000 9.86 1.70 37.03 4.00
1630 1870 5.381757 TGGTTTAAGCTTGATTACCAGTGT 58.618 37.500 9.86 0.00 32.30 3.55
1631 1871 5.240623 TGGTTTAAGCTTGATTACCAGTGTG 59.759 40.000 9.86 0.00 32.30 3.82
1632 1872 5.240844 GGTTTAAGCTTGATTACCAGTGTGT 59.759 40.000 9.86 0.00 0.00 3.72
1667 1908 4.155826 TGTGTGTCTCTTTCCTTGTTGTTG 59.844 41.667 0.00 0.00 0.00 3.33
1681 1922 1.337703 GTTGTTGCTGATTGCCACTGA 59.662 47.619 0.00 0.00 42.00 3.41
1686 1927 3.138884 TGCTGATTGCCACTGAGTTAA 57.861 42.857 0.00 0.00 42.00 2.01
1687 1928 2.813754 TGCTGATTGCCACTGAGTTAAC 59.186 45.455 0.00 0.00 42.00 2.01
1688 1929 3.077359 GCTGATTGCCACTGAGTTAACT 58.923 45.455 8.13 8.13 35.15 2.24
1689 1930 4.253685 GCTGATTGCCACTGAGTTAACTA 58.746 43.478 8.42 0.00 35.15 2.24
1690 1931 4.331168 GCTGATTGCCACTGAGTTAACTAG 59.669 45.833 8.42 8.98 35.15 2.57
1691 1932 5.724328 CTGATTGCCACTGAGTTAACTAGA 58.276 41.667 8.42 0.00 0.00 2.43
1692 1933 5.479306 TGATTGCCACTGAGTTAACTAGAC 58.521 41.667 8.42 0.00 0.00 2.59
1693 1934 4.948341 TTGCCACTGAGTTAACTAGACA 57.052 40.909 8.42 1.58 0.00 3.41
1734 1977 3.735591 GGGCAATGCAGCAATGATTTAT 58.264 40.909 15.04 0.00 35.83 1.40
1738 1981 5.862323 GGCAATGCAGCAATGATTTATAGAG 59.138 40.000 15.04 0.00 35.83 2.43
1742 1985 8.512138 CAATGCAGCAATGATTTATAGAGATGA 58.488 33.333 4.21 0.00 0.00 2.92
1743 1986 8.631480 ATGCAGCAATGATTTATAGAGATGAA 57.369 30.769 0.00 0.00 0.00 2.57
1810 2053 8.349983 ACATTTCAGCGTAGAAAAGTAAACAAT 58.650 29.630 9.65 0.00 40.54 2.71
1831 2074 9.690913 AACAATGATCCATCTTCTCAATTCTAA 57.309 29.630 0.00 0.00 0.00 2.10
1848 2091 8.690884 TCAATTCTAACTCATCAAGTCCTAGAG 58.309 37.037 0.00 0.00 37.17 2.43
1852 2095 3.295973 ACTCATCAAGTCCTAGAGGAGC 58.704 50.000 0.00 0.00 46.49 4.70
1869 2112 2.357009 GGAGCAATCTTGTATGCACAGG 59.643 50.000 0.00 0.00 44.95 4.00
1871 2114 3.012518 AGCAATCTTGTATGCACAGGTC 58.987 45.455 0.00 0.00 44.95 3.85
1873 2116 3.261580 CAATCTTGTATGCACAGGTCGA 58.738 45.455 0.00 0.00 35.67 4.20
1874 2117 2.654749 TCTTGTATGCACAGGTCGAG 57.345 50.000 0.00 0.00 35.67 4.04
1895 2138 6.924060 TCGAGAGGAGAAAGAAAACACTAAAG 59.076 38.462 0.00 0.00 0.00 1.85
1946 2189 1.136891 AGCAGCTGACAAACAAAACCC 59.863 47.619 20.43 0.00 0.00 4.11
1982 2225 8.029642 ACCTTTGTATTAGAAGAACGACAATG 57.970 34.615 0.00 0.00 0.00 2.82
2003 2246 3.067106 GTCAGTCACACAATGGTACCAG 58.933 50.000 21.41 10.24 0.00 4.00
2036 2279 9.605275 ATTAGATCGATCTCAAGTCATTCAAAA 57.395 29.630 30.49 14.86 38.32 2.44
2037 2280 9.605275 TTAGATCGATCTCAAGTCATTCAAAAT 57.395 29.630 30.49 4.24 38.32 1.82
2084 2327 4.685169 ACATACCTGAAAATGAACTGCG 57.315 40.909 0.00 0.00 0.00 5.18
2097 2340 2.146342 GAACTGCGCTATGCCATATGT 58.854 47.619 9.73 0.00 45.60 2.29
2099 2342 1.875514 ACTGCGCTATGCCATATGTTG 59.124 47.619 9.73 0.00 45.60 3.33
2100 2343 1.875514 CTGCGCTATGCCATATGTTGT 59.124 47.619 9.73 0.00 45.60 3.32
2101 2344 1.603326 TGCGCTATGCCATATGTTGTG 59.397 47.619 9.73 0.00 45.60 3.33
2137 2380 7.929159 ACAACCAAAGGAAAGCAATAAAAATG 58.071 30.769 0.00 0.00 0.00 2.32
2149 2392 7.748691 AGCAATAAAAATGCAAATCAAAGGT 57.251 28.000 0.00 0.00 46.22 3.50
2158 2402 9.995003 AAAATGCAAATCAAAGGTATACTGAAA 57.005 25.926 2.25 0.00 0.00 2.69
2178 2422 9.448438 ACTGAAATAACATATGTATGTGTGTGT 57.552 29.630 9.21 0.43 45.55 3.72
2180 2424 9.225436 TGAAATAACATATGTATGTGTGTGTGT 57.775 29.630 9.21 0.00 45.55 3.72
2192 2436 1.604278 TGTGTGTGTGAGAGAGAGACG 59.396 52.381 0.00 0.00 0.00 4.18
2200 2444 3.874543 TGTGAGAGAGAGACGATTCTAGC 59.125 47.826 0.00 0.00 29.47 3.42
2224 2468 8.759782 AGCTGTACATAGTAAATGGTAAGTTCT 58.240 33.333 0.00 0.00 0.00 3.01
2225 2469 8.818057 GCTGTACATAGTAAATGGTAAGTTCTG 58.182 37.037 0.00 0.00 0.00 3.02
2240 2484 9.796120 TGGTAAGTTCTGTTTGTTTATTCTTTG 57.204 29.630 0.00 0.00 0.00 2.77
2272 2517 9.672086 AAATAAATGAAACGAATGAAGACGAAA 57.328 25.926 0.00 0.00 0.00 3.46
2287 2532 5.296813 AGACGAAATTTTCACCATGTAGC 57.703 39.130 9.66 0.00 0.00 3.58
2306 2551 3.578688 AGCGCTTCCAATCAAAATCAAC 58.421 40.909 2.64 0.00 0.00 3.18
2332 2577 4.581077 TCAGAGAGATGAACATGATCCG 57.419 45.455 0.00 0.00 0.00 4.18
2349 2594 1.409064 TCCGTTCCAATCCTGATCTCG 59.591 52.381 0.00 0.00 0.00 4.04
2356 2601 2.029918 CCAATCCTGATCTCGACGCATA 60.030 50.000 0.00 0.00 0.00 3.14
2362 2607 1.132588 GATCTCGACGCATACTTGCC 58.867 55.000 0.00 0.00 46.57 4.52
2378 2623 0.740149 TGCCAGTTGTGCTTGACTTG 59.260 50.000 0.00 0.00 0.00 3.16
2384 2629 2.171448 AGTTGTGCTTGACTTGGAGAGT 59.829 45.455 0.00 0.00 42.70 3.24
2393 2638 5.065346 GCTTGACTTGGAGAGTATTTTAGGC 59.935 44.000 0.00 0.00 39.19 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
1 2 4.251268 AGACTAAAACGTATCCAAGCACC 58.749 43.478 0.00 0.00 0.00 5.01
2 3 4.927425 TGAGACTAAAACGTATCCAAGCAC 59.073 41.667 0.00 0.00 0.00 4.40
4 5 5.810587 TCATGAGACTAAAACGTATCCAAGC 59.189 40.000 0.00 0.00 0.00 4.01
5 6 7.223058 GTCATGAGACTAAAACGTATCCAAG 57.777 40.000 0.00 0.00 41.64 3.61
20 21 6.071278 AGTCCCACTACTTTTAGTCATGAGAC 60.071 42.308 0.00 0.00 45.31 3.36
21 22 6.017192 AGTCCCACTACTTTTAGTCATGAGA 58.983 40.000 0.00 0.00 36.31 3.27
22 23 6.287589 AGTCCCACTACTTTTAGTCATGAG 57.712 41.667 0.00 0.00 36.31 2.90
23 24 7.786046 TTAGTCCCACTACTTTTAGTCATGA 57.214 36.000 0.00 0.00 36.31 3.07
24 25 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
25 26 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
26 27 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
27 28 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
28 29 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
29 30 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
30 31 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
31 32 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
32 33 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
33 34 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
34 35 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
35 36 4.630505 GCTAGCAAGTTTTAGTCCCACTAC 59.369 45.833 10.63 0.00 28.93 2.73
36 37 4.323257 GGCTAGCAAGTTTTAGTCCCACTA 60.323 45.833 18.24 0.00 0.00 2.74
37 38 3.559384 GGCTAGCAAGTTTTAGTCCCACT 60.559 47.826 18.24 0.00 0.00 4.00
38 39 2.747989 GGCTAGCAAGTTTTAGTCCCAC 59.252 50.000 18.24 0.00 0.00 4.61
39 40 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
40 41 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
41 42 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
42 43 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
43 44 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
44 45 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
45 46 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
46 47 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
47 48 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
48 49 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
49 50 0.254178 CATGGGTGAGGCTAGCAAGT 59.746 55.000 18.24 0.00 0.00 3.16
50 51 1.099879 GCATGGGTGAGGCTAGCAAG 61.100 60.000 18.24 0.00 0.00 4.01
51 52 1.077501 GCATGGGTGAGGCTAGCAA 60.078 57.895 18.24 0.00 0.00 3.91
52 53 1.565390 AAGCATGGGTGAGGCTAGCA 61.565 55.000 18.24 0.00 42.15 3.49
53 54 1.099879 CAAGCATGGGTGAGGCTAGC 61.100 60.000 6.04 6.04 42.15 3.42
54 55 0.543277 TCAAGCATGGGTGAGGCTAG 59.457 55.000 0.00 0.00 42.15 3.42
55 56 0.991146 TTCAAGCATGGGTGAGGCTA 59.009 50.000 0.00 0.00 42.15 3.93
56 57 0.333993 ATTCAAGCATGGGTGAGGCT 59.666 50.000 0.00 0.00 45.93 4.58
57 58 0.743097 GATTCAAGCATGGGTGAGGC 59.257 55.000 0.00 0.00 0.00 4.70
58 59 1.341285 TGGATTCAAGCATGGGTGAGG 60.341 52.381 0.00 0.00 0.00 3.86
59 60 2.133281 TGGATTCAAGCATGGGTGAG 57.867 50.000 0.00 0.00 0.00 3.51
60 61 2.449464 CTTGGATTCAAGCATGGGTGA 58.551 47.619 0.00 0.00 43.10 4.02
61 62 2.953466 CTTGGATTCAAGCATGGGTG 57.047 50.000 0.00 0.00 43.10 4.61
104 105 9.866655 AGTTTGGAGGATAATAAATGCTCATAA 57.133 29.630 8.48 1.54 38.10 1.90
105 106 9.507329 GAGTTTGGAGGATAATAAATGCTCATA 57.493 33.333 8.48 0.00 38.10 2.15
106 107 8.223330 AGAGTTTGGAGGATAATAAATGCTCAT 58.777 33.333 8.48 0.00 38.10 2.90
107 108 7.577303 AGAGTTTGGAGGATAATAAATGCTCA 58.423 34.615 8.48 0.00 38.10 4.26
108 109 7.174080 GGAGAGTTTGGAGGATAATAAATGCTC 59.826 40.741 0.00 0.00 36.02 4.26
109 110 7.001073 GGAGAGTTTGGAGGATAATAAATGCT 58.999 38.462 0.00 0.00 0.00 3.79
110 111 6.772716 TGGAGAGTTTGGAGGATAATAAATGC 59.227 38.462 0.00 0.00 0.00 3.56
111 112 8.752005 TTGGAGAGTTTGGAGGATAATAAATG 57.248 34.615 0.00 0.00 0.00 2.32
112 113 9.579932 GATTGGAGAGTTTGGAGGATAATAAAT 57.420 33.333 0.00 0.00 0.00 1.40
113 114 7.998964 GGATTGGAGAGTTTGGAGGATAATAAA 59.001 37.037 0.00 0.00 0.00 1.40
114 115 7.128728 TGGATTGGAGAGTTTGGAGGATAATAA 59.871 37.037 0.00 0.00 0.00 1.40
115 116 6.619437 TGGATTGGAGAGTTTGGAGGATAATA 59.381 38.462 0.00 0.00 0.00 0.98
116 117 5.433051 TGGATTGGAGAGTTTGGAGGATAAT 59.567 40.000 0.00 0.00 0.00 1.28
117 118 4.788075 TGGATTGGAGAGTTTGGAGGATAA 59.212 41.667 0.00 0.00 0.00 1.75
118 119 4.370776 TGGATTGGAGAGTTTGGAGGATA 58.629 43.478 0.00 0.00 0.00 2.59
119 120 3.192944 TGGATTGGAGAGTTTGGAGGAT 58.807 45.455 0.00 0.00 0.00 3.24
120 121 2.573462 CTGGATTGGAGAGTTTGGAGGA 59.427 50.000 0.00 0.00 0.00 3.71
121 122 2.573462 TCTGGATTGGAGAGTTTGGAGG 59.427 50.000 0.00 0.00 0.00 4.30
122 123 3.988976 TCTGGATTGGAGAGTTTGGAG 57.011 47.619 0.00 0.00 0.00 3.86
123 124 3.652869 AGTTCTGGATTGGAGAGTTTGGA 59.347 43.478 0.00 0.00 0.00 3.53
124 125 4.006319 GAGTTCTGGATTGGAGAGTTTGG 58.994 47.826 0.00 0.00 0.00 3.28
125 126 3.681897 CGAGTTCTGGATTGGAGAGTTTG 59.318 47.826 0.00 0.00 0.00 2.93
126 127 3.866449 GCGAGTTCTGGATTGGAGAGTTT 60.866 47.826 0.00 0.00 0.00 2.66
127 128 2.354203 GCGAGTTCTGGATTGGAGAGTT 60.354 50.000 0.00 0.00 0.00 3.01
128 129 1.205893 GCGAGTTCTGGATTGGAGAGT 59.794 52.381 0.00 0.00 0.00 3.24
129 130 1.472376 GGCGAGTTCTGGATTGGAGAG 60.472 57.143 0.00 0.00 0.00 3.20
130 131 0.537188 GGCGAGTTCTGGATTGGAGA 59.463 55.000 0.00 0.00 0.00 3.71
131 132 0.462759 GGGCGAGTTCTGGATTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
132 133 1.602237 GGGCGAGTTCTGGATTGGA 59.398 57.895 0.00 0.00 0.00 3.53
133 134 1.815421 CGGGCGAGTTCTGGATTGG 60.815 63.158 0.00 0.00 0.00 3.16
134 135 1.079127 ACGGGCGAGTTCTGGATTG 60.079 57.895 0.00 0.00 0.00 2.67
135 136 1.079127 CACGGGCGAGTTCTGGATT 60.079 57.895 0.00 0.00 0.00 3.01
136 137 1.827399 AACACGGGCGAGTTCTGGAT 61.827 55.000 0.00 0.00 0.00 3.41
137 138 1.180456 TAACACGGGCGAGTTCTGGA 61.180 55.000 0.00 0.00 31.81 3.86
138 139 0.320073 TTAACACGGGCGAGTTCTGG 60.320 55.000 0.00 0.00 31.81 3.86
139 140 1.504359 TTTAACACGGGCGAGTTCTG 58.496 50.000 0.00 0.00 31.81 3.02
140 141 2.140717 CTTTTAACACGGGCGAGTTCT 58.859 47.619 0.00 0.00 31.81 3.01
141 142 2.137523 TCTTTTAACACGGGCGAGTTC 58.862 47.619 0.00 0.00 31.81 3.01
142 143 2.140717 CTCTTTTAACACGGGCGAGTT 58.859 47.619 0.00 0.00 33.77 3.01
143 144 1.342174 TCTCTTTTAACACGGGCGAGT 59.658 47.619 0.00 0.00 0.00 4.18
144 145 1.993370 CTCTCTTTTAACACGGGCGAG 59.007 52.381 0.00 0.00 0.00 5.03
145 146 1.337447 CCTCTCTTTTAACACGGGCGA 60.337 52.381 0.00 0.00 0.00 5.54
146 147 1.076332 CCTCTCTTTTAACACGGGCG 58.924 55.000 0.00 0.00 0.00 6.13
147 148 2.289506 ACTCCTCTCTTTTAACACGGGC 60.290 50.000 0.00 0.00 0.00 6.13
148 149 3.679824 ACTCCTCTCTTTTAACACGGG 57.320 47.619 0.00 0.00 0.00 5.28
149 150 7.386848 TCATTTAACTCCTCTCTTTTAACACGG 59.613 37.037 0.00 0.00 0.00 4.94
150 151 8.306680 TCATTTAACTCCTCTCTTTTAACACG 57.693 34.615 0.00 0.00 0.00 4.49
151 152 8.722394 CCTCATTTAACTCCTCTCTTTTAACAC 58.278 37.037 0.00 0.00 0.00 3.32
152 153 8.656806 TCCTCATTTAACTCCTCTCTTTTAACA 58.343 33.333 0.00 0.00 0.00 2.41
153 154 9.157104 CTCCTCATTTAACTCCTCTCTTTTAAC 57.843 37.037 0.00 0.00 0.00 2.01
154 155 9.101325 TCTCCTCATTTAACTCCTCTCTTTTAA 57.899 33.333 0.00 0.00 0.00 1.52
155 156 8.666129 TCTCCTCATTTAACTCCTCTCTTTTA 57.334 34.615 0.00 0.00 0.00 1.52
156 157 7.456269 TCTCTCCTCATTTAACTCCTCTCTTTT 59.544 37.037 0.00 0.00 0.00 2.27
157 158 6.957020 TCTCTCCTCATTTAACTCCTCTCTTT 59.043 38.462 0.00 0.00 0.00 2.52
158 159 6.498538 TCTCTCCTCATTTAACTCCTCTCTT 58.501 40.000 0.00 0.00 0.00 2.85
159 160 6.069088 TCTCTCTCCTCATTTAACTCCTCTCT 60.069 42.308 0.00 0.00 0.00 3.10
160 161 6.126409 TCTCTCTCCTCATTTAACTCCTCTC 58.874 44.000 0.00 0.00 0.00 3.20
161 162 6.086011 TCTCTCTCCTCATTTAACTCCTCT 57.914 41.667 0.00 0.00 0.00 3.69
162 163 5.301805 CCTCTCTCTCCTCATTTAACTCCTC 59.698 48.000 0.00 0.00 0.00 3.71
163 164 5.043732 TCCTCTCTCTCCTCATTTAACTCCT 60.044 44.000 0.00 0.00 0.00 3.69
164 165 5.068591 GTCCTCTCTCTCCTCATTTAACTCC 59.931 48.000 0.00 0.00 0.00 3.85
165 166 5.891551 AGTCCTCTCTCTCCTCATTTAACTC 59.108 44.000 0.00 0.00 0.00 3.01
166 167 5.837829 AGTCCTCTCTCTCCTCATTTAACT 58.162 41.667 0.00 0.00 0.00 2.24
167 168 7.648039 TTAGTCCTCTCTCTCCTCATTTAAC 57.352 40.000 0.00 0.00 0.00 2.01
168 169 7.507616 GGATTAGTCCTCTCTCTCCTCATTTAA 59.492 40.741 0.00 0.00 41.60 1.52
169 170 7.007723 GGATTAGTCCTCTCTCTCCTCATTTA 58.992 42.308 0.00 0.00 41.60 1.40
170 171 5.838521 GGATTAGTCCTCTCTCTCCTCATTT 59.161 44.000 0.00 0.00 41.60 2.32
171 172 5.103301 TGGATTAGTCCTCTCTCTCCTCATT 60.103 44.000 5.79 0.00 45.32 2.57
172 173 4.418526 TGGATTAGTCCTCTCTCTCCTCAT 59.581 45.833 5.79 0.00 45.32 2.90
173 174 3.788708 TGGATTAGTCCTCTCTCTCCTCA 59.211 47.826 5.79 0.00 45.32 3.86
174 175 4.142038 GTGGATTAGTCCTCTCTCTCCTC 58.858 52.174 5.79 0.00 45.32 3.71
175 176 3.529734 TGTGGATTAGTCCTCTCTCTCCT 59.470 47.826 5.79 0.00 45.32 3.69
176 177 3.904717 TGTGGATTAGTCCTCTCTCTCC 58.095 50.000 5.79 0.00 45.32 3.71
177 178 6.478512 AAATGTGGATTAGTCCTCTCTCTC 57.521 41.667 5.79 0.00 45.32 3.20
178 179 6.882768 AAAATGTGGATTAGTCCTCTCTCT 57.117 37.500 5.79 0.00 45.32 3.10
179 180 7.787028 ACTAAAATGTGGATTAGTCCTCTCTC 58.213 38.462 5.79 0.00 45.32 3.20
180 181 7.741554 ACTAAAATGTGGATTAGTCCTCTCT 57.258 36.000 5.79 0.00 45.32 3.10
181 182 8.145122 CCTACTAAAATGTGGATTAGTCCTCTC 58.855 40.741 5.79 0.00 45.32 3.20
182 183 7.071321 CCCTACTAAAATGTGGATTAGTCCTCT 59.929 40.741 5.79 0.00 45.32 3.69
183 184 7.217906 CCCTACTAAAATGTGGATTAGTCCTC 58.782 42.308 5.79 2.58 45.32 3.71
184 185 6.101296 CCCCTACTAAAATGTGGATTAGTCCT 59.899 42.308 5.79 0.00 45.32 3.85
185 186 6.126565 ACCCCTACTAAAATGTGGATTAGTCC 60.127 42.308 0.00 0.00 40.53 3.85
186 187 6.896883 ACCCCTACTAAAATGTGGATTAGTC 58.103 40.000 1.78 0.00 40.53 2.59
187 188 6.903340 ACCCCTACTAAAATGTGGATTAGT 57.097 37.500 3.93 3.93 43.05 2.24
188 189 7.222161 GGTACCCCTACTAAAATGTGGATTAG 58.778 42.308 0.00 0.00 35.67 1.73
189 190 7.140522 GGTACCCCTACTAAAATGTGGATTA 57.859 40.000 0.00 0.00 0.00 1.75
190 191 6.009908 GGTACCCCTACTAAAATGTGGATT 57.990 41.667 0.00 0.00 0.00 3.01
191 192 5.641789 GGTACCCCTACTAAAATGTGGAT 57.358 43.478 0.00 0.00 0.00 3.41
207 208 7.551974 GACTAAAATTTTCTAGTCAGGGTACCC 59.448 40.741 24.65 24.65 42.41 3.69
208 209 8.319881 AGACTAAAATTTTCTAGTCAGGGTACC 58.680 37.037 25.21 2.17 44.32 3.34
209 210 9.368674 GAGACTAAAATTTTCTAGTCAGGGTAC 57.631 37.037 25.21 12.05 44.32 3.34
210 211 9.096823 TGAGACTAAAATTTTCTAGTCAGGGTA 57.903 33.333 25.21 11.13 44.32 3.69
211 212 7.974504 TGAGACTAAAATTTTCTAGTCAGGGT 58.025 34.615 25.21 12.10 44.32 4.34
212 213 8.848474 TTGAGACTAAAATTTTCTAGTCAGGG 57.152 34.615 25.21 5.49 44.32 4.45
213 214 9.712305 TCTTGAGACTAAAATTTTCTAGTCAGG 57.288 33.333 25.21 16.69 44.32 3.86
231 232 4.223255 AGGGGCTAAAACTAGTCTTGAGAC 59.777 45.833 0.00 2.93 45.08 3.36
232 233 4.426704 AGGGGCTAAAACTAGTCTTGAGA 58.573 43.478 0.00 0.00 0.00 3.27
233 234 4.468153 AGAGGGGCTAAAACTAGTCTTGAG 59.532 45.833 0.00 0.00 0.00 3.02
234 235 4.426704 AGAGGGGCTAAAACTAGTCTTGA 58.573 43.478 0.00 0.00 0.00 3.02
235 236 4.828072 AGAGGGGCTAAAACTAGTCTTG 57.172 45.455 0.00 0.00 0.00 3.02
236 237 5.844773 AAAGAGGGGCTAAAACTAGTCTT 57.155 39.130 0.00 0.00 0.00 3.01
237 238 6.024247 ACTAAAGAGGGGCTAAAACTAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
238 239 6.070938 TGACTAAAGAGGGGCTAAAACTAGTC 60.071 42.308 0.00 0.00 0.00 2.59
239 240 5.783875 TGACTAAAGAGGGGCTAAAACTAGT 59.216 40.000 0.00 0.00 0.00 2.57
240 241 6.295719 TGACTAAAGAGGGGCTAAAACTAG 57.704 41.667 0.00 0.00 0.00 2.57
241 242 5.189145 CCTGACTAAAGAGGGGCTAAAACTA 59.811 44.000 0.00 0.00 0.00 2.24
242 243 4.019231 CCTGACTAAAGAGGGGCTAAAACT 60.019 45.833 0.00 0.00 0.00 2.66
243 244 4.262617 CCTGACTAAAGAGGGGCTAAAAC 58.737 47.826 0.00 0.00 0.00 2.43
244 245 3.265995 CCCTGACTAAAGAGGGGCTAAAA 59.734 47.826 0.00 0.00 44.88 1.52
245 246 2.844348 CCCTGACTAAAGAGGGGCTAAA 59.156 50.000 0.00 0.00 44.88 1.85
246 247 2.478292 CCCTGACTAAAGAGGGGCTAA 58.522 52.381 0.00 0.00 44.88 3.09
247 248 2.176247 CCCTGACTAAAGAGGGGCTA 57.824 55.000 0.00 0.00 44.88 3.93
248 249 3.013682 CCCTGACTAAAGAGGGGCT 57.986 57.895 0.00 0.00 44.88 5.19
252 253 1.280457 AGCACCCCTGACTAAAGAGG 58.720 55.000 0.00 0.00 0.00 3.69
253 254 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
254 255 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
255 256 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
256 257 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
257 258 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
258 259 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
259 260 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
260 261 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
261 262 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
262 263 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
263 264 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
264 265 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
265 266 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
266 267 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
267 268 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
268 269 3.508845 AAGAGGCTAAAGTTCCAAGCA 57.491 42.857 0.00 0.00 38.01 3.91
269 270 5.705905 TCTTTAAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 39.12 4.01
270 271 7.118535 GTCTCTTTAAGAGGCTAAAGTTCCAAG 59.881 40.741 18.21 0.00 43.38 3.61
271 272 6.935208 GTCTCTTTAAGAGGCTAAAGTTCCAA 59.065 38.462 18.21 0.00 43.38 3.53
272 273 6.465084 GTCTCTTTAAGAGGCTAAAGTTCCA 58.535 40.000 18.21 0.00 43.38 3.53
273 274 6.971527 GTCTCTTTAAGAGGCTAAAGTTCC 57.028 41.667 18.21 0.00 43.38 3.62
282 283 9.654663 TGACTAAAAATAGTCTCTTTAAGAGGC 57.345 33.333 17.87 17.87 46.94 4.70
325 326 1.075601 AAGAGGGTGCTTGGATCCAA 58.924 50.000 25.53 25.53 0.00 3.53
326 327 1.839994 CTAAGAGGGTGCTTGGATCCA 59.160 52.381 11.44 11.44 0.00 3.41
327 328 1.840635 ACTAAGAGGGTGCTTGGATCC 59.159 52.381 4.20 4.20 31.62 3.36
328 329 3.055094 TCAACTAAGAGGGTGCTTGGATC 60.055 47.826 0.00 0.00 31.62 3.36
329 330 2.912956 TCAACTAAGAGGGTGCTTGGAT 59.087 45.455 0.00 0.00 31.62 3.41
330 331 2.334977 TCAACTAAGAGGGTGCTTGGA 58.665 47.619 0.00 0.00 31.62 3.53
331 332 2.859165 TCAACTAAGAGGGTGCTTGG 57.141 50.000 0.00 0.00 33.18 3.61
332 333 4.008074 TCTTCAACTAAGAGGGTGCTTG 57.992 45.455 0.00 0.00 39.36 4.01
333 334 4.706842 TTCTTCAACTAAGAGGGTGCTT 57.293 40.909 0.00 0.00 44.95 3.91
334 335 4.706842 TTTCTTCAACTAAGAGGGTGCT 57.293 40.909 0.00 0.00 44.95 4.40
335 336 5.703876 CAATTTCTTCAACTAAGAGGGTGC 58.296 41.667 0.00 0.00 44.95 5.01
336 337 5.241506 TGCAATTTCTTCAACTAAGAGGGTG 59.758 40.000 0.00 0.00 44.95 4.61
337 338 5.385198 TGCAATTTCTTCAACTAAGAGGGT 58.615 37.500 0.00 0.00 44.95 4.34
338 339 5.964958 TGCAATTTCTTCAACTAAGAGGG 57.035 39.130 0.00 0.00 44.95 4.30
339 340 6.917533 ACATGCAATTTCTTCAACTAAGAGG 58.082 36.000 0.00 0.00 44.95 3.69
340 341 7.587629 TGACATGCAATTTCTTCAACTAAGAG 58.412 34.615 0.00 0.00 44.95 2.85
341 342 7.509141 TGACATGCAATTTCTTCAACTAAGA 57.491 32.000 0.00 0.00 42.62 2.10
342 343 8.752766 ATTGACATGCAATTTCTTCAACTAAG 57.247 30.769 8.87 0.00 44.68 2.18
362 363 1.529438 TCAGCGAACGGTCAAATTGAC 59.471 47.619 17.16 17.16 46.23 3.18
363 364 1.872388 TCAGCGAACGGTCAAATTGA 58.128 45.000 0.00 0.00 0.00 2.57
364 365 2.679355 TTCAGCGAACGGTCAAATTG 57.321 45.000 0.00 0.00 0.00 2.32
365 366 3.701532 TTTTCAGCGAACGGTCAAATT 57.298 38.095 0.00 0.00 0.00 1.82
366 367 3.701532 TTTTTCAGCGAACGGTCAAAT 57.298 38.095 0.00 0.00 0.00 2.32
383 384 2.510768 ACACTCTCTCGAGCGTTTTT 57.489 45.000 7.81 0.00 41.09 1.94
384 385 2.034812 AGAACACTCTCTCGAGCGTTTT 59.965 45.455 7.81 4.15 41.30 2.43
385 386 1.609555 AGAACACTCTCTCGAGCGTTT 59.390 47.619 7.81 2.83 41.30 3.60
386 387 1.198178 GAGAACACTCTCTCGAGCGTT 59.802 52.381 7.81 5.69 43.25 4.84
387 388 0.800012 GAGAACACTCTCTCGAGCGT 59.200 55.000 7.81 1.59 44.22 5.07
388 389 0.098025 GGAGAACACTCTCTCGAGCG 59.902 60.000 7.81 0.48 46.45 5.03
389 390 1.132262 CAGGAGAACACTCTCTCGAGC 59.868 57.143 7.81 0.00 46.45 5.03
390 391 1.132262 GCAGGAGAACACTCTCTCGAG 59.868 57.143 5.93 5.93 46.45 4.04
391 392 1.169577 GCAGGAGAACACTCTCTCGA 58.830 55.000 2.39 0.00 46.45 4.04
392 393 0.884514 TGCAGGAGAACACTCTCTCG 59.115 55.000 2.39 0.00 46.45 4.04
393 394 2.418471 CCATGCAGGAGAACACTCTCTC 60.418 54.545 0.00 0.00 46.45 3.20
394 395 1.554160 CCATGCAGGAGAACACTCTCT 59.446 52.381 0.00 0.00 46.45 3.10
395 396 1.277557 ACCATGCAGGAGAACACTCTC 59.722 52.381 0.00 0.00 46.51 3.20
396 397 1.356124 ACCATGCAGGAGAACACTCT 58.644 50.000 0.00 0.00 41.22 3.24
397 398 3.118629 TCATACCATGCAGGAGAACACTC 60.119 47.826 0.00 0.00 41.22 3.51
398 399 2.840038 TCATACCATGCAGGAGAACACT 59.160 45.455 0.00 0.00 41.22 3.55
399 400 3.266510 TCATACCATGCAGGAGAACAC 57.733 47.619 0.00 0.00 41.22 3.32
400 401 3.998913 TTCATACCATGCAGGAGAACA 57.001 42.857 0.00 0.00 41.22 3.18
424 425 6.616947 AGATCTCGTATCCTCGATGATTTTC 58.383 40.000 8.55 0.58 39.12 2.29
428 429 6.127168 ACTCTAGATCTCGTATCCTCGATGAT 60.127 42.308 8.31 8.31 39.12 2.45
430 431 5.416083 ACTCTAGATCTCGTATCCTCGATG 58.584 45.833 0.00 0.00 39.12 3.84
435 436 7.305813 TCAGTTACTCTAGATCTCGTATCCT 57.694 40.000 0.00 0.00 0.00 3.24
442 443 6.148150 CCGGTGTATCAGTTACTCTAGATCTC 59.852 46.154 0.00 0.00 0.00 2.75
454 455 2.803956 TCAGTCTCCGGTGTATCAGTT 58.196 47.619 0.00 0.00 0.00 3.16
465 466 0.315251 TCAGTGCAGTTCAGTCTCCG 59.685 55.000 0.00 0.00 0.00 4.63
469 470 0.032130 TCGGTCAGTGCAGTTCAGTC 59.968 55.000 0.00 0.00 0.00 3.51
488 489 5.416013 TGTTGTCTATCAGTCTCGATCTGTT 59.584 40.000 14.45 10.41 34.86 3.16
551 552 4.904154 GTGGAGAAACAAGAACGAAAATCG 59.096 41.667 0.00 0.00 46.93 3.34
552 553 5.909610 CAGTGGAGAAACAAGAACGAAAATC 59.090 40.000 0.00 0.00 0.00 2.17
553 554 5.357032 ACAGTGGAGAAACAAGAACGAAAAT 59.643 36.000 0.00 0.00 0.00 1.82
554 555 4.698304 ACAGTGGAGAAACAAGAACGAAAA 59.302 37.500 0.00 0.00 0.00 2.29
555 556 4.258543 ACAGTGGAGAAACAAGAACGAAA 58.741 39.130 0.00 0.00 0.00 3.46
663 677 1.286354 TTCGACCGCCGTGTGATTTC 61.286 55.000 0.00 0.00 39.75 2.17
901 936 3.244044 GGTGATGAGATAGCTTGGTCCTC 60.244 52.174 0.00 0.00 0.00 3.71
902 937 2.703007 GGTGATGAGATAGCTTGGTCCT 59.297 50.000 0.00 0.00 0.00 3.85
907 942 2.101415 TCGGTGGTGATGAGATAGCTTG 59.899 50.000 0.00 0.00 0.00 4.01
909 944 2.073252 TCGGTGGTGATGAGATAGCT 57.927 50.000 0.00 0.00 0.00 3.32
910 945 2.748605 CTTCGGTGGTGATGAGATAGC 58.251 52.381 0.00 0.00 0.00 2.97
911 946 2.101415 TGCTTCGGTGGTGATGAGATAG 59.899 50.000 0.00 0.00 0.00 2.08
912 947 2.101415 CTGCTTCGGTGGTGATGAGATA 59.899 50.000 0.00 0.00 0.00 1.98
913 948 0.904649 TGCTTCGGTGGTGATGAGAT 59.095 50.000 0.00 0.00 0.00 2.75
927 974 1.809209 GCTCGTCAGGCTCTGCTTC 60.809 63.158 0.00 0.00 0.00 3.86
1150 1216 0.974010 ATCCAGCACATTTGGCCAGG 60.974 55.000 5.11 0.32 35.62 4.45
1582 1821 6.649155 ACTCAACCAATTTTTAAGCCAAAGT 58.351 32.000 0.00 0.00 0.00 2.66
1603 1843 6.206829 ACTGGTAATCAAGCTTAAACCAACTC 59.793 38.462 17.18 0.00 36.62 3.01
1625 1865 2.096819 ACAAGGTAAACGCAACACACTG 59.903 45.455 0.00 0.00 0.00 3.66
1626 1866 2.096819 CACAAGGTAAACGCAACACACT 59.903 45.455 0.00 0.00 0.00 3.55
1627 1867 2.159490 ACACAAGGTAAACGCAACACAC 60.159 45.455 0.00 0.00 0.00 3.82
1628 1868 2.085320 ACACAAGGTAAACGCAACACA 58.915 42.857 0.00 0.00 0.00 3.72
1630 1870 2.085320 ACACACAAGGTAAACGCAACA 58.915 42.857 0.00 0.00 0.00 3.33
1631 1871 2.353579 AGACACACAAGGTAAACGCAAC 59.646 45.455 0.00 0.00 0.00 4.17
1632 1872 2.610374 GAGACACACAAGGTAAACGCAA 59.390 45.455 0.00 0.00 0.00 4.85
1667 1908 3.077359 AGTTAACTCAGTGGCAATCAGC 58.923 45.455 1.12 0.00 44.65 4.26
1681 1922 3.181483 CGCGGGGTATTGTCTAGTTAACT 60.181 47.826 13.68 13.68 0.00 2.24
1686 1927 1.440476 GCGCGGGGTATTGTCTAGT 59.560 57.895 8.83 0.00 0.00 2.57
1687 1928 1.660575 CGCGCGGGGTATTGTCTAG 60.661 63.158 24.84 0.00 0.00 2.43
1688 1929 1.947597 AACGCGCGGGGTATTGTCTA 61.948 55.000 35.22 0.00 0.00 2.59
1689 1930 3.305177 AACGCGCGGGGTATTGTCT 62.305 57.895 35.22 5.42 0.00 3.41
1690 1931 2.816520 AACGCGCGGGGTATTGTC 60.817 61.111 35.22 0.00 0.00 3.18
1691 1932 3.122323 CAACGCGCGGGGTATTGT 61.122 61.111 35.22 7.19 0.00 2.71
1692 1933 4.530325 GCAACGCGCGGGGTATTG 62.530 66.667 35.22 27.38 0.00 1.90
1716 1957 8.512138 TCATCTCTATAAATCATTGCTGCATTG 58.488 33.333 16.23 16.23 0.00 2.82
1793 2036 8.883731 AGATGGATCATTGTTTACTTTTCTACG 58.116 33.333 0.00 0.00 0.00 3.51
1810 2053 8.082672 TGAGTTAGAATTGAGAAGATGGATCA 57.917 34.615 0.00 0.00 0.00 2.92
1831 2074 3.295973 GCTCCTCTAGGACTTGATGAGT 58.704 50.000 13.87 0.00 39.78 3.41
1848 2091 2.357009 CCTGTGCATACAAGATTGCTCC 59.643 50.000 0.00 0.00 39.60 4.70
1852 2095 3.261580 TCGACCTGTGCATACAAGATTG 58.738 45.455 0.00 0.00 36.14 2.67
1869 2112 4.623002 AGTGTTTTCTTTCTCCTCTCGAC 58.377 43.478 0.00 0.00 0.00 4.20
1871 2114 6.702282 ACTTTAGTGTTTTCTTTCTCCTCTCG 59.298 38.462 0.00 0.00 0.00 4.04
1919 2162 3.599343 TGTTTGTCAGCTGCTAGGTATG 58.401 45.455 9.47 0.00 0.00 2.39
1946 2189 9.884465 CTTCTAATACAAAGGTTCAAAACAGAG 57.116 33.333 0.00 0.00 0.00 3.35
1982 2225 3.067106 CTGGTACCATTGTGTGACTGAC 58.933 50.000 16.75 0.00 0.00 3.51
2003 2246 7.095565 TGACTTGAGATCGATCTAATACTCGAC 60.096 40.741 27.36 12.26 45.63 4.20
2036 2279 6.207417 GCTGTGTGGCAGTATTATTCCAATAT 59.793 38.462 0.00 0.00 46.64 1.28
2037 2280 5.530915 GCTGTGTGGCAGTATTATTCCAATA 59.469 40.000 0.00 0.00 46.64 1.90
2060 2303 4.622740 GCAGTTCATTTTCAGGTATGTTGC 59.377 41.667 0.00 0.00 0.00 4.17
2084 2327 5.954296 AGAATCACAACATATGGCATAGC 57.046 39.130 13.39 0.00 0.00 2.97
2097 2340 8.160765 TCCTTTGGTTGTTCTATAGAATCACAA 58.839 33.333 17.95 14.87 36.33 3.33
2099 2342 8.561738 TTCCTTTGGTTGTTCTATAGAATCAC 57.438 34.615 17.95 15.90 36.33 3.06
2100 2343 9.231297 CTTTCCTTTGGTTGTTCTATAGAATCA 57.769 33.333 17.95 14.13 36.33 2.57
2101 2344 8.184848 GCTTTCCTTTGGTTGTTCTATAGAATC 58.815 37.037 17.95 11.97 36.33 2.52
2155 2399 9.489393 CACACACACACATACATATGTTATTTC 57.511 33.333 14.77 0.00 43.99 2.17
2158 2402 8.257306 TCTCACACACACACATACATATGTTAT 58.743 33.333 14.77 3.05 43.99 1.89
2160 2404 6.463360 TCTCACACACACACATACATATGTT 58.537 36.000 14.77 0.00 43.99 2.71
2169 2413 3.005261 GTCTCTCTCTCACACACACACAT 59.995 47.826 0.00 0.00 0.00 3.21
2178 2422 3.874543 GCTAGAATCGTCTCTCTCTCACA 59.125 47.826 0.00 0.00 35.12 3.58
2180 2424 4.126437 CAGCTAGAATCGTCTCTCTCTCA 58.874 47.826 0.00 0.00 35.12 3.27
2200 2444 9.871238 ACAGAACTTACCATTTACTATGTACAG 57.129 33.333 0.33 0.00 0.00 2.74
2272 2517 2.423538 GGAAGCGCTACATGGTGAAAAT 59.576 45.455 12.05 0.00 0.00 1.82
2287 2532 3.911868 TGGTTGATTTTGATTGGAAGCG 58.088 40.909 0.00 0.00 0.00 4.68
2306 2551 5.532664 TCATGTTCATCTCTCTGATCTGG 57.467 43.478 0.00 0.00 32.05 3.86
2332 2577 2.464865 CGTCGAGATCAGGATTGGAAC 58.535 52.381 0.00 0.00 0.00 3.62
2356 2601 0.740737 GTCAAGCACAACTGGCAAGT 59.259 50.000 0.00 0.00 38.71 3.16
2362 2607 2.547211 CTCTCCAAGTCAAGCACAACTG 59.453 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.