Multiple sequence alignment - TraesCS3D01G312600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G312600 chr3D 100.000 2219 0 0 1 2219 427057450 427055232 0.000000e+00 4098
1 TraesCS3D01G312600 chr3A 95.979 771 28 2 680 1448 559813318 559814087 0.000000e+00 1249
2 TraesCS3D01G312600 chr3A 81.974 233 20 10 164 383 559813102 559813325 6.300000e-41 178
3 TraesCS3D01G312600 chr3A 93.182 88 2 4 1 84 559813018 559813105 2.310000e-25 126
4 TraesCS3D01G312600 chr3B 95.187 748 24 4 680 1416 556686023 556685277 0.000000e+00 1171
5 TraesCS3D01G312600 chr3B 90.486 494 33 7 1446 1936 644315367 644315849 6.680000e-180 640
6 TraesCS3D01G312600 chr3B 86.842 266 17 5 1954 2219 644315914 644316161 4.670000e-72 281
7 TraesCS3D01G312600 chr3B 95.699 93 4 0 81 173 549759152 549759060 1.370000e-32 150
8 TraesCS3D01G312600 chr3B 93.182 88 2 4 1 84 556687140 556687053 2.310000e-25 126
9 TraesCS3D01G312600 chr7D 81.313 792 71 29 1447 2212 130765760 130766500 2.470000e-159 571
10 TraesCS3D01G312600 chr7D 84.058 276 33 5 1463 1736 136145795 136146061 2.830000e-64 255
11 TraesCS3D01G312600 chr7D 80.144 277 40 8 1463 1736 513247908 513247644 2.250000e-45 193
12 TraesCS3D01G312600 chr7D 96.970 99 2 1 72 170 85908379 85908476 4.900000e-37 165
13 TraesCS3D01G312600 chr2B 81.720 651 56 27 1602 2219 765292219 765292839 3.310000e-133 484
14 TraesCS3D01G312600 chr2B 87.719 285 25 4 400 675 767791123 767790840 7.640000e-85 324
15 TraesCS3D01G312600 chr2B 87.218 266 16 2 1954 2219 678386862 678386615 1.000000e-73 287
16 TraesCS3D01G312600 chr2B 86.466 266 15 4 1954 2219 113273029 113272785 2.810000e-69 272
17 TraesCS3D01G312600 chr5D 88.288 333 21 6 377 692 477961129 477960798 1.240000e-102 383
18 TraesCS3D01G312600 chr5D 81.273 267 38 7 1463 1724 61652852 61652593 2.890000e-49 206
19 TraesCS3D01G312600 chr2D 90.244 287 20 5 400 680 491025496 491025212 3.480000e-98 368
20 TraesCS3D01G312600 chr2D 86.688 308 27 7 384 679 175971572 175971877 1.640000e-86 329
21 TraesCS3D01G312600 chr1D 88.925 307 16 7 384 678 230704697 230704397 1.620000e-96 363
22 TraesCS3D01G312600 chr7B 87.171 304 29 4 382 675 591951842 591952145 9.820000e-89 337
23 TraesCS3D01G312600 chr7B 97.778 90 2 0 77 166 668031649 668031738 2.950000e-34 156
24 TraesCS3D01G312600 chr7A 88.028 284 28 3 384 661 730733842 730734125 4.570000e-87 331
25 TraesCS3D01G312600 chr1B 88.112 286 24 8 383 661 528497227 528497509 4.570000e-87 331
26 TraesCS3D01G312600 chr1B 94.175 103 3 2 71 173 402103310 402103409 1.060000e-33 154
27 TraesCS3D01G312600 chrUn 87.413 286 26 8 383 661 255617640 255617922 9.890000e-84 320
28 TraesCS3D01G312600 chrUn 96.809 94 2 1 73 166 9840362 9840454 2.950000e-34 156
29 TraesCS3D01G312600 chr4A 86.090 266 19 2 1954 2219 41969674 41969427 1.010000e-68 270
30 TraesCS3D01G312600 chr6A 81.655 278 40 5 1463 1736 504343869 504343599 1.030000e-53 220
31 TraesCS3D01G312600 chr6A 96.809 94 2 1 80 173 224610985 224611077 2.950000e-34 156
32 TraesCS3D01G312600 chr2A 81.100 291 41 11 1463 1744 762003378 762003093 1.030000e-53 220
33 TraesCS3D01G312600 chr6D 82.710 214 33 4 1463 1672 4979100 4978887 1.050000e-43 187
34 TraesCS3D01G312600 chr5B 81.250 240 29 5 407 630 493425868 493425629 1.750000e-41 180
35 TraesCS3D01G312600 chr6B 78.623 276 48 6 1448 1721 610061172 610061438 2.930000e-39 172
36 TraesCS3D01G312600 chr6B 97.849 93 1 1 75 167 716607875 716607784 2.280000e-35 159
37 TraesCS3D01G312600 chr6B 91.589 107 7 2 66 172 80083597 80083493 1.780000e-31 147
38 TraesCS3D01G312600 chr5A 97.849 93 2 0 75 167 47955847 47955755 6.340000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G312600 chr3D 427055232 427057450 2218 True 4098.000000 4098 100.000000 1 2219 1 chr3D.!!$R1 2218
1 TraesCS3D01G312600 chr3A 559813018 559814087 1069 False 517.666667 1249 90.378333 1 1448 3 chr3A.!!$F1 1447
2 TraesCS3D01G312600 chr3B 556685277 556687140 1863 True 648.500000 1171 94.184500 1 1416 2 chr3B.!!$R2 1415
3 TraesCS3D01G312600 chr3B 644315367 644316161 794 False 460.500000 640 88.664000 1446 2219 2 chr3B.!!$F1 773
4 TraesCS3D01G312600 chr7D 130765760 130766500 740 False 571.000000 571 81.313000 1447 2212 1 chr7D.!!$F2 765
5 TraesCS3D01G312600 chr2B 765292219 765292839 620 False 484.000000 484 81.720000 1602 2219 1 chr2B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 1378 0.162294 CGAACACGTAAAAGCCCGTC 59.838 55.0 0.0 0.0 34.59 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 2425 0.106419 TGGGTTTTTCGGAACAGCCT 60.106 50.0 11.91 0.0 34.85 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.545526 CTGACTCATGTGCTTTGTTCGT 59.454 45.455 0.00 0.00 0.00 3.85
59 62 7.852516 TGTGCTTTGTTCGTTTTTAAGTTTTT 58.147 26.923 0.00 0.00 0.00 1.94
87 92 9.664777 ACCCTTAATTTTAAAAAGTTACTCCCT 57.335 29.630 4.44 0.00 0.00 4.20
90 95 9.836076 CTTAATTTTAAAAAGTTACTCCCTCCG 57.164 33.333 4.44 0.00 0.00 4.63
91 96 7.828508 AATTTTAAAAAGTTACTCCCTCCGT 57.171 32.000 4.44 0.00 0.00 4.69
92 97 8.922931 AATTTTAAAAAGTTACTCCCTCCGTA 57.077 30.769 4.44 0.00 0.00 4.02
93 98 8.922931 ATTTTAAAAAGTTACTCCCTCCGTAA 57.077 30.769 4.44 0.00 0.00 3.18
94 99 8.744568 TTTTAAAAAGTTACTCCCTCCGTAAA 57.255 30.769 0.00 0.00 0.00 2.01
95 100 7.728847 TTAAAAAGTTACTCCCTCCGTAAAC 57.271 36.000 0.00 0.00 0.00 2.01
96 101 5.557576 AAAAGTTACTCCCTCCGTAAACT 57.442 39.130 0.00 0.00 0.00 2.66
97 102 6.670695 AAAAGTTACTCCCTCCGTAAACTA 57.329 37.500 0.00 0.00 0.00 2.24
98 103 6.670695 AAAGTTACTCCCTCCGTAAACTAA 57.329 37.500 0.00 0.00 0.00 2.24
99 104 6.864151 AAGTTACTCCCTCCGTAAACTAAT 57.136 37.500 0.00 0.00 0.00 1.73
100 105 7.961326 AAGTTACTCCCTCCGTAAACTAATA 57.039 36.000 0.00 0.00 0.00 0.98
101 106 8.544687 AAGTTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
102 107 9.646522 AAGTTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
103 108 9.646522 AGTTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
104 109 9.905171 GTTACTCCCTCCGTAAACTAATATAAG 57.095 37.037 0.00 0.00 0.00 1.73
105 110 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
106 111 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
107 112 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
108 113 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
109 114 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
110 115 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
111 116 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
112 117 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
129 134 9.918630 AGAGCGTTTAAAATACTAAAGTAGTGA 57.081 29.630 0.00 0.00 39.81 3.41
161 166 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
162 167 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
163 168 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
171 176 8.946797 TTAGTTTACAGAGGGAGTACTAACTT 57.053 34.615 7.09 0.00 35.56 2.66
196 201 3.685139 ATCGACAGTTCACAGTTGGAT 57.315 42.857 0.00 0.00 0.00 3.41
201 206 4.690748 CGACAGTTCACAGTTGGATTGTAT 59.309 41.667 0.00 0.00 0.00 2.29
202 207 5.179368 CGACAGTTCACAGTTGGATTGTATT 59.821 40.000 0.00 0.00 0.00 1.89
203 208 6.317789 ACAGTTCACAGTTGGATTGTATTG 57.682 37.500 0.00 0.00 0.00 1.90
204 209 5.827797 ACAGTTCACAGTTGGATTGTATTGT 59.172 36.000 0.00 0.00 0.00 2.71
205 210 6.995686 ACAGTTCACAGTTGGATTGTATTGTA 59.004 34.615 0.00 0.00 0.00 2.41
206 211 7.041372 ACAGTTCACAGTTGGATTGTATTGTAC 60.041 37.037 0.00 0.00 0.00 2.90
207 212 6.430000 AGTTCACAGTTGGATTGTATTGTACC 59.570 38.462 0.00 0.00 0.00 3.34
283 1141 4.355151 TCCGTATGGAGCAGCTCA 57.645 55.556 24.09 10.57 40.17 4.26
294 1152 3.190849 CAGCTCACGGTCGCCATG 61.191 66.667 0.00 0.00 0.00 3.66
300 1158 2.824041 ACGGTCGCCATGGCAATC 60.824 61.111 34.93 18.70 42.06 2.67
303 1161 3.204827 GTCGCCATGGCAATCGCT 61.205 61.111 34.93 0.00 42.06 4.93
313 1171 1.017387 GGCAATCGCTAAACCTCAGG 58.983 55.000 0.00 0.00 38.60 3.86
318 1176 0.606604 TCGCTAAACCTCAGGACACC 59.393 55.000 0.00 0.00 0.00 4.16
320 1178 0.984995 GCTAAACCTCAGGACACCCT 59.015 55.000 0.00 0.00 45.74 4.34
321 1179 1.066071 GCTAAACCTCAGGACACCCTC 60.066 57.143 0.00 0.00 42.02 4.30
322 1180 2.541466 CTAAACCTCAGGACACCCTCT 58.459 52.381 0.00 0.00 42.02 3.69
323 1181 1.353091 AAACCTCAGGACACCCTCTC 58.647 55.000 0.00 0.00 42.02 3.20
324 1182 0.545548 AACCTCAGGACACCCTCTCC 60.546 60.000 0.00 0.00 42.02 3.71
325 1183 1.687493 CCTCAGGACACCCTCTCCC 60.687 68.421 0.00 0.00 42.02 4.30
326 1184 1.079256 CTCAGGACACCCTCTCCCA 59.921 63.158 0.00 0.00 42.02 4.37
327 1185 1.229209 TCAGGACACCCTCTCCCAC 60.229 63.158 0.00 0.00 42.02 4.61
328 1186 1.536418 CAGGACACCCTCTCCCACA 60.536 63.158 0.00 0.00 42.02 4.17
329 1187 1.229336 AGGACACCCTCTCCCACAG 60.229 63.158 0.00 0.00 38.86 3.66
342 1200 1.153046 CCACAGTCCCACCGTTTGT 60.153 57.895 0.00 0.00 0.00 2.83
367 1237 4.426112 CGCAGCAGAGCAGGACGA 62.426 66.667 0.00 0.00 0.00 4.20
385 1255 2.656560 GACAGAGTCGTTGGCACTAT 57.343 50.000 0.00 0.00 0.00 2.12
386 1256 3.777465 GACAGAGTCGTTGGCACTATA 57.223 47.619 0.00 0.00 0.00 1.31
387 1257 3.436496 GACAGAGTCGTTGGCACTATAC 58.564 50.000 0.00 0.00 0.00 1.47
388 1258 2.165845 ACAGAGTCGTTGGCACTATACC 59.834 50.000 0.00 0.00 0.00 2.73
389 1259 2.427453 CAGAGTCGTTGGCACTATACCT 59.573 50.000 0.00 0.00 0.00 3.08
390 1260 2.427453 AGAGTCGTTGGCACTATACCTG 59.573 50.000 0.00 0.00 0.00 4.00
391 1261 1.480954 AGTCGTTGGCACTATACCTGG 59.519 52.381 0.00 0.00 0.00 4.45
392 1262 0.177141 TCGTTGGCACTATACCTGGC 59.823 55.000 0.00 0.00 34.80 4.85
393 1263 0.814010 CGTTGGCACTATACCTGGCC 60.814 60.000 0.00 0.00 46.58 5.36
397 1267 2.474410 GGCACTATACCTGGCCATAC 57.526 55.000 5.51 0.00 45.70 2.39
398 1268 1.003233 GGCACTATACCTGGCCATACC 59.997 57.143 5.51 0.00 45.70 2.73
399 1269 1.978580 GCACTATACCTGGCCATACCT 59.021 52.381 5.51 0.00 40.22 3.08
400 1270 2.028020 GCACTATACCTGGCCATACCTC 60.028 54.545 5.51 0.00 40.22 3.85
401 1271 2.231478 CACTATACCTGGCCATACCTCG 59.769 54.545 5.51 0.00 40.22 4.63
402 1272 1.825474 CTATACCTGGCCATACCTCGG 59.175 57.143 5.51 5.16 40.22 4.63
403 1273 0.836400 ATACCTGGCCATACCTCGGG 60.836 60.000 5.51 4.26 40.22 5.14
427 1297 4.451150 CTAGCCAAGCCCGACGCA 62.451 66.667 0.00 0.00 41.38 5.24
428 1298 3.950794 CTAGCCAAGCCCGACGCAA 62.951 63.158 0.00 0.00 41.38 4.85
429 1299 3.538785 TAGCCAAGCCCGACGCAAA 62.539 57.895 0.00 0.00 41.38 3.68
430 1300 3.972276 GCCAAGCCCGACGCAAAA 61.972 61.111 0.00 0.00 41.38 2.44
431 1301 2.725008 CCAAGCCCGACGCAAAAA 59.275 55.556 0.00 0.00 41.38 1.94
432 1302 1.660264 CCAAGCCCGACGCAAAAAC 60.660 57.895 0.00 0.00 41.38 2.43
433 1303 1.660264 CAAGCCCGACGCAAAAACC 60.660 57.895 0.00 0.00 41.38 3.27
434 1304 3.189010 AAGCCCGACGCAAAAACCG 62.189 57.895 0.00 0.00 41.38 4.44
436 1306 3.955101 CCCGACGCAAAAACCGCA 61.955 61.111 0.00 0.00 0.00 5.69
437 1307 2.426752 CCGACGCAAAAACCGCAG 60.427 61.111 0.00 0.00 0.00 5.18
472 1342 3.729698 CCGTCGGGCCGGTTTTTC 61.730 66.667 27.98 8.84 43.07 2.29
473 1343 4.079748 CGTCGGGCCGGTTTTTCG 62.080 66.667 27.98 16.37 0.00 3.46
499 1369 4.376176 CCCGGCCCGAACACGTAA 62.376 66.667 3.71 0.00 0.00 3.18
500 1370 2.357275 CCGGCCCGAACACGTAAA 60.357 61.111 3.71 0.00 0.00 2.01
501 1371 1.960250 CCGGCCCGAACACGTAAAA 60.960 57.895 3.71 0.00 0.00 1.52
502 1372 1.494189 CGGCCCGAACACGTAAAAG 59.506 57.895 0.00 0.00 0.00 2.27
503 1373 1.208358 GGCCCGAACACGTAAAAGC 59.792 57.895 0.00 0.00 0.00 3.51
504 1374 1.208358 GCCCGAACACGTAAAAGCC 59.792 57.895 0.00 0.00 0.00 4.35
505 1375 1.871077 CCCGAACACGTAAAAGCCC 59.129 57.895 0.00 0.00 0.00 5.19
506 1376 1.494189 CCGAACACGTAAAAGCCCG 59.506 57.895 0.00 0.00 0.00 6.13
507 1377 1.223417 CCGAACACGTAAAAGCCCGT 61.223 55.000 0.00 0.00 37.90 5.28
508 1378 0.162294 CGAACACGTAAAAGCCCGTC 59.838 55.000 0.00 0.00 34.59 4.79
509 1379 1.219646 GAACACGTAAAAGCCCGTCA 58.780 50.000 0.00 0.00 34.59 4.35
510 1380 1.193874 GAACACGTAAAAGCCCGTCAG 59.806 52.381 0.00 0.00 34.59 3.51
511 1381 0.601841 ACACGTAAAAGCCCGTCAGG 60.602 55.000 0.00 0.00 34.59 3.86
539 1409 4.851179 GGCCGGCCCGTCCTTTAG 62.851 72.222 36.64 0.00 0.00 1.85
540 1410 4.851179 GCCGGCCCGTCCTTTAGG 62.851 72.222 18.11 0.00 0.00 2.69
541 1411 3.078836 CCGGCCCGTCCTTTAGGA 61.079 66.667 0.85 0.00 43.08 2.94
554 1424 4.352887 TCCTTTAGGAAAACGCAAAAACG 58.647 39.130 0.00 0.00 42.18 3.60
555 1425 4.096081 TCCTTTAGGAAAACGCAAAAACGA 59.904 37.500 0.00 0.00 42.18 3.85
556 1426 4.979815 CCTTTAGGAAAACGCAAAAACGAT 59.020 37.500 0.00 0.00 37.39 3.73
557 1427 5.108027 CCTTTAGGAAAACGCAAAAACGATG 60.108 40.000 0.00 0.00 37.39 3.84
558 1428 2.738135 AGGAAAACGCAAAAACGATGG 58.262 42.857 0.00 0.00 36.70 3.51
559 1429 1.790043 GGAAAACGCAAAAACGATGGG 59.210 47.619 0.00 0.00 36.70 4.00
560 1430 1.191425 GAAAACGCAAAAACGATGGGC 59.809 47.619 0.00 0.00 36.70 5.36
561 1431 0.598942 AAACGCAAAAACGATGGGCC 60.599 50.000 0.00 0.00 36.70 5.80
562 1432 2.126110 CGCAAAAACGATGGGCCC 60.126 61.111 17.59 17.59 34.06 5.80
563 1433 2.126110 GCAAAAACGATGGGCCCG 60.126 61.111 19.37 7.98 0.00 6.13
564 1434 2.571231 CAAAAACGATGGGCCCGG 59.429 61.111 19.37 11.81 0.00 5.73
565 1435 3.378602 AAAAACGATGGGCCCGGC 61.379 61.111 19.37 10.78 0.00 6.13
580 1450 4.475135 GGCCCGGTCTTCAGGCTC 62.475 72.222 0.00 0.00 46.31 4.70
581 1451 3.706373 GCCCGGTCTTCAGGCTCA 61.706 66.667 0.00 0.00 43.62 4.26
582 1452 3.068881 CCCGGTCTTCAGGCTCAA 58.931 61.111 0.00 0.00 0.00 3.02
583 1453 1.374947 CCCGGTCTTCAGGCTCAAA 59.625 57.895 0.00 0.00 0.00 2.69
584 1454 0.250727 CCCGGTCTTCAGGCTCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
585 1455 1.614317 CCCGGTCTTCAGGCTCAAAAT 60.614 52.381 0.00 0.00 0.00 1.82
586 1456 1.740025 CCGGTCTTCAGGCTCAAAATC 59.260 52.381 0.00 0.00 0.00 2.17
587 1457 2.616510 CCGGTCTTCAGGCTCAAAATCT 60.617 50.000 0.00 0.00 0.00 2.40
588 1458 3.369471 CCGGTCTTCAGGCTCAAAATCTA 60.369 47.826 0.00 0.00 0.00 1.98
589 1459 3.868077 CGGTCTTCAGGCTCAAAATCTAG 59.132 47.826 0.00 0.00 0.00 2.43
590 1460 4.195416 GGTCTTCAGGCTCAAAATCTAGG 58.805 47.826 0.00 0.00 0.00 3.02
591 1461 3.625313 GTCTTCAGGCTCAAAATCTAGGC 59.375 47.826 0.00 0.00 38.50 3.93
592 1462 2.717639 TCAGGCTCAAAATCTAGGCC 57.282 50.000 0.00 0.00 42.74 5.19
595 1465 2.717639 GGCTCAAAATCTAGGCCTGA 57.282 50.000 17.99 11.61 39.68 3.86
596 1466 2.570135 GGCTCAAAATCTAGGCCTGAG 58.430 52.381 17.99 13.59 39.68 3.35
642 1512 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
643 1513 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
644 1514 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
645 1515 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
646 1516 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
651 1521 3.744719 GCTTTTTCGGGCCGGGTC 61.745 66.667 27.98 5.95 0.00 4.46
652 1522 3.428282 CTTTTTCGGGCCGGGTCG 61.428 66.667 27.98 7.42 0.00 4.79
679 1549 2.512896 GCCCATGGCCAGGACTAG 59.487 66.667 21.32 5.63 44.06 2.57
680 1550 2.378634 GCCCATGGCCAGGACTAGT 61.379 63.158 21.32 0.00 44.06 2.57
681 1551 1.926426 GCCCATGGCCAGGACTAGTT 61.926 60.000 21.32 0.00 44.06 2.24
797 1667 2.509336 CGCCGGAAATCACTCGCT 60.509 61.111 5.05 0.00 0.00 4.93
1223 2093 1.751924 CTACCTCTTCTGCTAGGCGTT 59.248 52.381 0.00 0.00 36.24 4.84
1377 2259 8.318876 GTGTGTGTACAGTGACGATATTAAATC 58.681 37.037 0.00 0.00 37.52 2.17
1552 2436 3.074412 ACAAAAGTGATAGGCTGTTCCG 58.926 45.455 0.00 0.00 40.77 4.30
1614 2498 1.834822 GATAGGTCAGGCCCGCTCT 60.835 63.158 0.00 0.00 38.26 4.09
1623 2507 1.818674 CAGGCCCGCTCTTAAACAAAT 59.181 47.619 0.00 0.00 0.00 2.32
1660 2544 7.188157 TGTTTGTTTGACCGTTAACTTACATC 58.812 34.615 3.71 0.00 0.00 3.06
1665 2549 2.934553 GACCGTTAACTTACATCTGGGC 59.065 50.000 3.71 0.00 0.00 5.36
1667 2551 2.355310 CCGTTAACTTACATCTGGGCCA 60.355 50.000 5.85 5.85 0.00 5.36
1668 2552 2.676342 CGTTAACTTACATCTGGGCCAC 59.324 50.000 0.00 0.00 0.00 5.01
1669 2553 3.681593 GTTAACTTACATCTGGGCCACA 58.318 45.455 0.00 0.00 0.00 4.17
1670 2554 4.270008 GTTAACTTACATCTGGGCCACAT 58.730 43.478 0.00 0.00 0.00 3.21
1671 2555 2.425143 ACTTACATCTGGGCCACATG 57.575 50.000 18.86 18.86 0.00 3.21
1672 2556 1.064463 ACTTACATCTGGGCCACATGG 60.064 52.381 23.28 10.13 38.53 3.66
1673 2557 0.258484 TTACATCTGGGCCACATGGG 59.742 55.000 23.28 5.07 40.85 4.00
1714 2600 4.290942 TCTCACCCTTATCTTCCTTCTCC 58.709 47.826 0.00 0.00 0.00 3.71
1862 2751 0.253327 GAAGATGGAAAGAGGGCGGT 59.747 55.000 0.00 0.00 0.00 5.68
1918 2814 1.015109 GTCGAGCTCGTACTCCATGA 58.985 55.000 33.33 10.14 40.80 3.07
2058 3001 2.683572 TAGCTCCGCCCAGCAGAA 60.684 61.111 0.00 0.00 42.40 3.02
2070 3013 0.107752 CAGCAGAAAGGAGGAGGAGC 60.108 60.000 0.00 0.00 0.00 4.70
2071 3014 0.252650 AGCAGAAAGGAGGAGGAGCT 60.253 55.000 0.00 0.00 0.00 4.09
2072 3015 0.177836 GCAGAAAGGAGGAGGAGCTC 59.822 60.000 4.71 4.71 0.00 4.09
2081 3024 4.459089 GAGGAGCTCCACACCGCC 62.459 72.222 33.90 5.53 38.89 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 70 7.828508 ACGGAGGGAGTAACTTTTTAAAATT 57.171 32.000 0.55 0.00 0.00 1.82
68 71 8.922931 TTACGGAGGGAGTAACTTTTTAAAAT 57.077 30.769 0.55 0.00 0.00 1.82
84 89 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
86 91 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
103 108 9.918630 TCACTACTTTAGTATTTTAAACGCTCT 57.081 29.630 0.00 0.00 37.23 4.09
135 140 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
136 141 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
137 142 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
145 150 9.544579 AAGTTAGTACTCCCTCTGTAAACTAAT 57.455 33.333 0.00 0.00 31.99 1.73
146 151 8.946797 AAGTTAGTACTCCCTCTGTAAACTAA 57.053 34.615 0.00 0.00 31.99 2.24
148 153 9.187996 GATAAGTTAGTACTCCCTCTGTAAACT 57.812 37.037 0.00 0.00 31.99 2.66
149 154 8.964772 TGATAAGTTAGTACTCCCTCTGTAAAC 58.035 37.037 0.00 0.00 31.99 2.01
150 155 9.537852 TTGATAAGTTAGTACTCCCTCTGTAAA 57.462 33.333 0.00 0.00 31.99 2.01
151 156 9.710818 ATTGATAAGTTAGTACTCCCTCTGTAA 57.289 33.333 0.00 0.00 31.99 2.41
152 157 9.352191 GATTGATAAGTTAGTACTCCCTCTGTA 57.648 37.037 0.00 0.00 31.99 2.74
153 158 7.013464 CGATTGATAAGTTAGTACTCCCTCTGT 59.987 40.741 0.00 0.00 31.99 3.41
154 159 7.228906 TCGATTGATAAGTTAGTACTCCCTCTG 59.771 40.741 0.00 0.00 31.99 3.35
155 160 7.229106 GTCGATTGATAAGTTAGTACTCCCTCT 59.771 40.741 0.00 0.00 31.99 3.69
156 161 7.013083 TGTCGATTGATAAGTTAGTACTCCCTC 59.987 40.741 0.00 0.00 31.99 4.30
157 162 6.832384 TGTCGATTGATAAGTTAGTACTCCCT 59.168 38.462 0.00 0.00 31.99 4.20
158 163 7.035840 TGTCGATTGATAAGTTAGTACTCCC 57.964 40.000 0.00 0.00 31.99 4.30
159 164 7.705214 ACTGTCGATTGATAAGTTAGTACTCC 58.295 38.462 0.00 0.00 31.99 3.85
160 165 9.224058 GAACTGTCGATTGATAAGTTAGTACTC 57.776 37.037 0.00 0.00 35.33 2.59
161 166 8.737175 TGAACTGTCGATTGATAAGTTAGTACT 58.263 33.333 11.90 0.00 35.33 2.73
162 167 8.796278 GTGAACTGTCGATTGATAAGTTAGTAC 58.204 37.037 11.90 9.08 35.33 2.73
163 168 8.517056 TGTGAACTGTCGATTGATAAGTTAGTA 58.483 33.333 11.90 3.02 35.33 1.82
164 169 7.375834 TGTGAACTGTCGATTGATAAGTTAGT 58.624 34.615 11.90 0.00 35.33 2.24
165 170 7.542477 ACTGTGAACTGTCGATTGATAAGTTAG 59.458 37.037 11.90 9.49 35.33 2.34
166 171 7.375834 ACTGTGAACTGTCGATTGATAAGTTA 58.624 34.615 11.90 0.00 35.33 2.24
167 172 6.223852 ACTGTGAACTGTCGATTGATAAGTT 58.776 36.000 11.79 11.79 36.89 2.66
171 176 4.929211 CCAACTGTGAACTGTCGATTGATA 59.071 41.667 0.00 0.00 0.00 2.15
196 201 7.888021 AGAAGATTTCATGGTGGTACAATACAA 59.112 33.333 0.00 0.00 44.16 2.41
201 206 7.252612 TCTAGAAGATTTCATGGTGGTACAA 57.747 36.000 0.00 0.00 44.16 2.41
202 207 6.630413 GCTCTAGAAGATTTCATGGTGGTACA 60.630 42.308 0.00 0.00 0.00 2.90
203 208 5.755861 GCTCTAGAAGATTTCATGGTGGTAC 59.244 44.000 0.00 0.00 0.00 3.34
204 209 5.663106 AGCTCTAGAAGATTTCATGGTGGTA 59.337 40.000 0.00 0.00 0.00 3.25
205 210 4.472833 AGCTCTAGAAGATTTCATGGTGGT 59.527 41.667 0.00 0.00 0.00 4.16
206 211 5.033589 AGCTCTAGAAGATTTCATGGTGG 57.966 43.478 0.00 0.00 0.00 4.61
207 212 6.815089 ACTAGCTCTAGAAGATTTCATGGTG 58.185 40.000 10.63 0.00 36.97 4.17
283 1141 2.824041 GATTGCCATGGCGACCGT 60.824 61.111 29.39 13.89 45.51 4.83
294 1152 1.017387 CCTGAGGTTTAGCGATTGCC 58.983 55.000 0.00 0.00 44.31 4.52
300 1158 0.391263 GGGTGTCCTGAGGTTTAGCG 60.391 60.000 0.00 0.00 0.00 4.26
303 1161 2.537143 GAGAGGGTGTCCTGAGGTTTA 58.463 52.381 0.00 0.00 45.05 2.01
313 1171 1.545706 GGACTGTGGGAGAGGGTGTC 61.546 65.000 0.00 0.00 0.00 3.67
318 1176 2.294078 GGTGGGACTGTGGGAGAGG 61.294 68.421 0.00 0.00 0.00 3.69
320 1178 2.603473 CGGTGGGACTGTGGGAGA 60.603 66.667 0.00 0.00 0.00 3.71
321 1179 2.052047 AAACGGTGGGACTGTGGGAG 62.052 60.000 0.00 0.00 37.84 4.30
322 1180 2.073716 AAACGGTGGGACTGTGGGA 61.074 57.895 0.00 0.00 37.84 4.37
323 1181 1.896660 CAAACGGTGGGACTGTGGG 60.897 63.158 0.00 0.00 37.84 4.61
324 1182 0.107081 TACAAACGGTGGGACTGTGG 59.893 55.000 0.00 0.00 37.84 4.17
325 1183 1.223187 GTACAAACGGTGGGACTGTG 58.777 55.000 0.00 0.00 37.84 3.66
326 1184 0.831966 TGTACAAACGGTGGGACTGT 59.168 50.000 0.00 0.00 39.91 3.55
327 1185 1.508632 CTGTACAAACGGTGGGACTG 58.491 55.000 0.00 0.00 0.00 3.51
328 1186 0.250166 GCTGTACAAACGGTGGGACT 60.250 55.000 0.00 0.00 34.20 3.85
329 1187 1.232621 GGCTGTACAAACGGTGGGAC 61.233 60.000 0.00 0.00 34.20 4.46
342 1200 4.801624 CTCTGCTGCGCGGCTGTA 62.802 66.667 38.42 25.28 34.49 2.74
367 1237 2.165845 GGTATAGTGCCAACGACTCTGT 59.834 50.000 0.00 0.00 0.00 3.41
378 1248 1.003233 GGTATGGCCAGGTATAGTGCC 59.997 57.143 13.05 0.78 44.27 5.01
379 1249 1.978580 AGGTATGGCCAGGTATAGTGC 59.021 52.381 13.05 0.00 40.61 4.40
380 1250 2.231478 CGAGGTATGGCCAGGTATAGTG 59.769 54.545 13.05 0.00 40.61 2.74
381 1251 2.526432 CGAGGTATGGCCAGGTATAGT 58.474 52.381 13.05 0.00 40.61 2.12
382 1252 1.825474 CCGAGGTATGGCCAGGTATAG 59.175 57.143 13.05 0.92 40.61 1.31
383 1253 1.551560 CCCGAGGTATGGCCAGGTATA 60.552 57.143 13.05 0.00 40.61 1.47
384 1254 0.836400 CCCGAGGTATGGCCAGGTAT 60.836 60.000 13.05 0.00 40.61 2.73
385 1255 1.458777 CCCGAGGTATGGCCAGGTA 60.459 63.158 13.05 0.00 40.61 3.08
386 1256 2.768344 CCCGAGGTATGGCCAGGT 60.768 66.667 13.05 0.00 40.61 4.00
387 1257 4.256180 GCCCGAGGTATGGCCAGG 62.256 72.222 13.05 6.01 41.97 4.45
410 1280 3.950794 TTGCGTCGGGCTTGGCTAG 62.951 63.158 0.00 0.00 44.05 3.42
411 1281 3.538785 TTTGCGTCGGGCTTGGCTA 62.539 57.895 0.00 0.00 44.05 3.93
412 1282 4.947147 TTTGCGTCGGGCTTGGCT 62.947 61.111 0.00 0.00 44.05 4.75
413 1283 3.492311 TTTTTGCGTCGGGCTTGGC 62.492 57.895 0.00 0.00 44.05 4.52
414 1284 1.660264 GTTTTTGCGTCGGGCTTGG 60.660 57.895 0.00 0.00 44.05 3.61
415 1285 1.660264 GGTTTTTGCGTCGGGCTTG 60.660 57.895 0.00 0.00 44.05 4.01
416 1286 2.725641 GGTTTTTGCGTCGGGCTT 59.274 55.556 0.00 0.00 44.05 4.35
417 1287 3.656045 CGGTTTTTGCGTCGGGCT 61.656 61.111 0.00 0.00 44.05 5.19
419 1289 3.872409 CTGCGGTTTTTGCGTCGGG 62.872 63.158 0.00 0.00 34.24 5.14
420 1290 2.426752 CTGCGGTTTTTGCGTCGG 60.427 61.111 0.00 0.00 34.24 4.79
421 1291 2.426752 CCTGCGGTTTTTGCGTCG 60.427 61.111 0.00 0.00 34.24 5.12
422 1292 2.729491 GCCTGCGGTTTTTGCGTC 60.729 61.111 0.00 0.00 34.24 5.19
423 1293 4.279043 GGCCTGCGGTTTTTGCGT 62.279 61.111 0.00 0.00 34.24 5.24
426 1296 3.267597 CTCGGGCCTGCGGTTTTTG 62.268 63.158 6.73 0.00 0.00 2.44
427 1297 2.983592 CTCGGGCCTGCGGTTTTT 60.984 61.111 6.73 0.00 0.00 1.94
456 1326 4.079748 CGAAAAACCGGCCCGACG 62.080 66.667 3.71 0.00 0.00 5.12
457 1327 3.729698 CCGAAAAACCGGCCCGAC 61.730 66.667 3.71 0.00 43.25 4.79
482 1352 3.880162 TTTACGTGTTCGGGCCGGG 62.880 63.158 27.98 12.73 41.85 5.73
483 1353 1.903783 CTTTTACGTGTTCGGGCCGG 61.904 60.000 27.98 12.18 41.85 6.13
484 1354 1.494189 CTTTTACGTGTTCGGGCCG 59.506 57.895 22.51 22.51 41.85 6.13
485 1355 1.208358 GCTTTTACGTGTTCGGGCC 59.792 57.895 0.00 0.00 41.85 5.80
486 1356 1.208358 GGCTTTTACGTGTTCGGGC 59.792 57.895 0.00 0.00 41.85 6.13
487 1357 1.871077 GGGCTTTTACGTGTTCGGG 59.129 57.895 0.00 0.00 41.85 5.14
488 1358 1.223417 ACGGGCTTTTACGTGTTCGG 61.223 55.000 0.00 0.00 42.39 4.30
489 1359 0.162294 GACGGGCTTTTACGTGTTCG 59.838 55.000 0.00 0.00 44.24 3.95
490 1360 1.193874 CTGACGGGCTTTTACGTGTTC 59.806 52.381 0.00 0.00 44.24 3.18
491 1361 1.223187 CTGACGGGCTTTTACGTGTT 58.777 50.000 0.00 0.00 44.24 3.32
492 1362 0.601841 CCTGACGGGCTTTTACGTGT 60.602 55.000 0.00 0.00 44.24 4.49
493 1363 2.159181 CCTGACGGGCTTTTACGTG 58.841 57.895 0.00 0.00 44.24 4.49
523 1393 4.851179 CCTAAAGGACGGGCCGGC 62.851 72.222 31.78 29.74 43.43 6.13
524 1394 2.187896 TTTCCTAAAGGACGGGCCGG 62.188 60.000 31.78 12.53 45.39 6.13
525 1395 0.321830 TTTTCCTAAAGGACGGGCCG 60.322 55.000 27.06 27.06 45.39 6.13
526 1396 1.171308 GTTTTCCTAAAGGACGGGCC 58.829 55.000 0.00 0.00 45.39 5.80
527 1397 0.800631 CGTTTTCCTAAAGGACGGGC 59.199 55.000 0.00 0.00 45.39 6.13
528 1398 0.800631 GCGTTTTCCTAAAGGACGGG 59.199 55.000 9.84 0.00 45.39 5.28
529 1399 1.515081 TGCGTTTTCCTAAAGGACGG 58.485 50.000 9.84 0.00 45.39 4.79
530 1400 3.612472 TTTGCGTTTTCCTAAAGGACG 57.388 42.857 0.00 1.33 45.39 4.79
531 1401 4.205588 CGTTTTTGCGTTTTCCTAAAGGAC 59.794 41.667 0.00 0.00 45.39 3.85
532 1402 4.096081 TCGTTTTTGCGTTTTCCTAAAGGA 59.904 37.500 0.00 0.00 43.73 3.36
533 1403 4.352887 TCGTTTTTGCGTTTTCCTAAAGG 58.647 39.130 0.00 0.00 33.41 3.11
534 1404 5.108027 CCATCGTTTTTGCGTTTTCCTAAAG 60.108 40.000 0.00 0.00 0.00 1.85
535 1405 4.740695 CCATCGTTTTTGCGTTTTCCTAAA 59.259 37.500 0.00 0.00 0.00 1.85
536 1406 4.291783 CCATCGTTTTTGCGTTTTCCTAA 58.708 39.130 0.00 0.00 0.00 2.69
537 1407 3.304794 CCCATCGTTTTTGCGTTTTCCTA 60.305 43.478 0.00 0.00 0.00 2.94
538 1408 2.544903 CCCATCGTTTTTGCGTTTTCCT 60.545 45.455 0.00 0.00 0.00 3.36
539 1409 1.790043 CCCATCGTTTTTGCGTTTTCC 59.210 47.619 0.00 0.00 0.00 3.13
540 1410 1.191425 GCCCATCGTTTTTGCGTTTTC 59.809 47.619 0.00 0.00 0.00 2.29
541 1411 1.213491 GCCCATCGTTTTTGCGTTTT 58.787 45.000 0.00 0.00 0.00 2.43
542 1412 0.598942 GGCCCATCGTTTTTGCGTTT 60.599 50.000 0.00 0.00 0.00 3.60
543 1413 1.006688 GGCCCATCGTTTTTGCGTT 60.007 52.632 0.00 0.00 0.00 4.84
544 1414 2.648454 GGCCCATCGTTTTTGCGT 59.352 55.556 0.00 0.00 0.00 5.24
545 1415 2.126110 GGGCCCATCGTTTTTGCG 60.126 61.111 19.95 0.00 0.00 4.85
546 1416 2.126110 CGGGCCCATCGTTTTTGC 60.126 61.111 24.92 0.00 0.00 3.68
547 1417 2.571231 CCGGGCCCATCGTTTTTG 59.429 61.111 24.92 0.78 0.00 2.44
548 1418 3.378602 GCCGGGCCCATCGTTTTT 61.379 61.111 24.92 0.00 0.00 1.94
565 1435 0.250727 TTTTGAGCCTGAAGACCGGG 60.251 55.000 6.32 0.00 44.49 5.73
566 1436 1.740025 GATTTTGAGCCTGAAGACCGG 59.260 52.381 0.00 0.00 0.00 5.28
567 1437 2.704572 AGATTTTGAGCCTGAAGACCG 58.295 47.619 0.00 0.00 0.00 4.79
568 1438 4.195416 CCTAGATTTTGAGCCTGAAGACC 58.805 47.826 0.00 0.00 0.00 3.85
569 1439 3.625313 GCCTAGATTTTGAGCCTGAAGAC 59.375 47.826 0.00 0.00 0.00 3.01
570 1440 3.370953 GGCCTAGATTTTGAGCCTGAAGA 60.371 47.826 0.00 0.00 40.57 2.87
571 1441 2.948315 GGCCTAGATTTTGAGCCTGAAG 59.052 50.000 0.00 0.00 40.57 3.02
572 1442 3.004752 GGCCTAGATTTTGAGCCTGAA 57.995 47.619 0.00 0.00 40.57 3.02
573 1443 2.717639 GGCCTAGATTTTGAGCCTGA 57.282 50.000 0.00 0.00 40.57 3.86
576 1446 2.570135 CTCAGGCCTAGATTTTGAGCC 58.430 52.381 3.98 0.00 44.20 4.70
622 1492 3.855503 AAAAAGCCCGACCCGGTCC 62.856 63.158 12.16 0.00 46.80 4.46
623 1493 2.281970 AAAAAGCCCGACCCGGTC 60.282 61.111 7.59 7.59 46.80 4.79
624 1494 2.281970 GAAAAAGCCCGACCCGGT 60.282 61.111 0.00 0.00 46.80 5.28
626 1496 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
627 1497 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
628 1498 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
629 1499 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
634 1504 3.744719 GACCCGGCCCGAAAAAGC 61.745 66.667 3.71 0.00 0.00 3.51
635 1505 3.428282 CGACCCGGCCCGAAAAAG 61.428 66.667 3.71 0.00 0.00 2.27
663 1533 0.107017 CAACTAGTCCTGGCCATGGG 60.107 60.000 15.13 4.96 0.00 4.00
664 1534 0.107017 CCAACTAGTCCTGGCCATGG 60.107 60.000 5.51 7.63 0.00 3.66
665 1535 3.483954 CCAACTAGTCCTGGCCATG 57.516 57.895 5.51 2.84 0.00 3.66
670 1540 1.299976 GGGTGCCAACTAGTCCTGG 59.700 63.158 8.98 8.98 35.67 4.45
671 1541 0.321653 GTGGGTGCCAACTAGTCCTG 60.322 60.000 0.00 0.00 34.18 3.86
672 1542 1.489560 GGTGGGTGCCAACTAGTCCT 61.490 60.000 0.00 0.00 38.38 3.85
673 1543 1.002502 GGTGGGTGCCAACTAGTCC 60.003 63.158 0.00 0.00 38.38 3.85
674 1544 0.328258 ATGGTGGGTGCCAACTAGTC 59.672 55.000 0.00 0.00 42.67 2.59
675 1545 0.038166 CATGGTGGGTGCCAACTAGT 59.962 55.000 0.00 0.00 42.67 2.57
676 1546 0.038166 ACATGGTGGGTGCCAACTAG 59.962 55.000 0.00 0.00 42.67 2.57
677 1547 0.251121 CACATGGTGGGTGCCAACTA 60.251 55.000 0.00 0.00 42.67 2.24
678 1548 1.531365 CACATGGTGGGTGCCAACT 60.531 57.895 0.00 0.00 42.67 3.16
679 1549 3.050339 CACATGGTGGGTGCCAAC 58.950 61.111 0.00 0.00 42.51 3.77
797 1667 3.834013 TTGGGTTCATGGCGCGTGA 62.834 57.895 8.43 9.70 0.00 4.35
1223 2093 4.293648 CGGGCGCCATATGGACGA 62.294 66.667 30.23 0.00 37.05 4.20
1388 2270 4.517952 TGCAAACGAATGGACATGAAAT 57.482 36.364 0.00 0.00 0.00 2.17
1432 2314 2.223537 ACTCGATCGCATATGCACAA 57.776 45.000 26.52 12.15 42.21 3.33
1542 2425 0.106419 TGGGTTTTTCGGAACAGCCT 60.106 50.000 11.91 0.00 34.85 4.58
1552 2436 2.103941 TGCCTGGTCATTTGGGTTTTTC 59.896 45.455 0.00 0.00 0.00 2.29
1598 2482 0.324923 TTAAGAGCGGGCCTGACCTA 60.325 55.000 18.31 0.00 39.10 3.08
1614 2498 9.279904 CAAACAGTCAACTAACGATTTGTTTAA 57.720 29.630 0.00 0.00 42.09 1.52
1623 2507 5.163834 GGTCAAACAAACAGTCAACTAACGA 60.164 40.000 0.00 0.00 0.00 3.85
1669 2553 2.578021 AGAGAACTTACATGTGGCCCAT 59.422 45.455 9.11 0.00 0.00 4.00
1670 2554 1.985159 AGAGAACTTACATGTGGCCCA 59.015 47.619 9.11 0.00 0.00 5.36
1671 2555 2.237392 AGAGAGAACTTACATGTGGCCC 59.763 50.000 9.11 0.00 0.00 5.80
1672 2556 3.196685 AGAGAGAGAACTTACATGTGGCC 59.803 47.826 9.11 0.00 0.00 5.36
1673 2557 4.081972 TGAGAGAGAGAACTTACATGTGGC 60.082 45.833 9.11 0.00 0.00 5.01
1686 2570 4.480537 AGGAAGATAAGGGTGAGAGAGAGA 59.519 45.833 0.00 0.00 0.00 3.10
1714 2600 2.969262 GAGTGATAGGGAAGAAGAGGGG 59.031 54.545 0.00 0.00 0.00 4.79
1862 2751 3.040206 GCTCTGAGCTGCCCATCCA 62.040 63.158 21.93 0.00 38.45 3.41
2124 3067 2.350514 GTGCTCCTTGGCTGCTCT 59.649 61.111 0.00 0.00 0.00 4.09
2200 3143 1.901948 CGCCCGGAGTAGATGGCTA 60.902 63.158 0.73 0.00 41.80 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.