>input_sequence_86687
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-----------------------------ATGGCAGGGCAGTTGAAGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTG
GCCGTCGCCTCGTCCCTGGTCGCCACGGCCTCCGCGGCCGACGCGCCCGCCGTGTCGCCCACCTCCGGCGCCACCGCCGC
GCCGCCCACCTCCGGCGCGACCGGCGCCGCCCCGGCCTTCGCCGCCGTGTCCGTCGCCGCCGCGGCGTTCGGCTACCTCT
TCTGCTAG------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G312600
TCCATAGATCAACCAAACGGAGAATGCTGACTCATGTGCTTTGTTCGT--TTTTAAGTTTTTAACCCTTAA--TTTTAAA
AAGTTACTCCCTCCGTAAACTAATATAAGAGCGTTTAAAATACTAAAGTAGTGATCTAAATGCTCTTATATTAGTTTACA
GAGGGAGTACTAACTTATCAATCGACAGTTCACAGTTGGATTGTATTGTACCACCATGAAATCTTCTAGAGCTAGTAATA
AAAACATCCGT---------------------------------------------------------------------
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---------------------------------------------------------AAAGATCGCTGTAAAAAA-----
--ATCCGTATGGAGCAGCTCACGGTCGCCATGGCAATCGCTAAACCTCAGGACACCCTCTCCCACAGTCCCACCGTTTGT
ACAGCCGCG------------CAGCAGAGCAGGACGACAGAGTCGTTGGCACTATACCTGGCCATACCTCGGGCCGGGCC
TAGCCAAGCCCGACGCAAAAACCGCAGGCCCGAGCCCGGCCCGGCCGTCGGGCCGGTTTTTCGGGCCCGAGCCCGGCCCG
AACACGTAAAAGCCCGTCAGGCTTCGGGCCGGGCCGGCCCGTCCTTTAGGAAAACGCAAAAACGATGGGCCCGGCCCGGT
CTTCAGGCTCAAAATCTAGGCCTGAGCCCGGCCCGGGAGCGGCATCGGGCCGGACCGGGTCGGGCTTTTTCGGGCCGGGT
CGGGCCGGGCTGCCCATGGCCAGGACTAGTTGGCACCCACCATGTGCCATTGCCGGCTGCCGCGCGAATAATTCGCCGGT
CCAGCGCAGCGACGGGCCCCGCACCAACTCCCCCCACCCCACGTACCGGCGCCGGAAATCACTCGCTCACGCGCCATGAA
CCCAAGCCAGCCACGCGACAGCCGGCCGTCCTCCCGTTCGCCAGCTTATATTAGGCAGGCCGGCCTAATCGCAGCTGTAT
ATAAGCCGCTCCCACGCTTCTCCGTCGAAGCAGCGACACCGGCGTCAATCAACAGCAACAAGGCGCCTTCCTCGCCCTCC
TCAAGCAAGCGAGAAGCCAAGTCACGAAGATGGCAGGGCAGTTGAAGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTG
GCCGTCGCCTCGTCCCTGGTCGCCACGGCCTCCGCGGCCGACGCGCCCGCCGTGTCGCCCACCTCCGGCGCCACCGCCGC
GCCGCCCACCTCCGGCGCGACCGGCGCCGCCCCGGCCTTCGCCGCCGTGTCCGTCGCCGCCGCGGCGTTCGGCTACCTCT
TCTGCTAGGCGTTCGTCCATATGGCGCCCGGTTTGGTGCCGCGG--CGCGCGCG--CATGCTCTTCTTTTCTGGGATTTG
TTGTTGTGGGTTCATGAGCGTTCCGGTGCAATTTCGTTTCTTGGTT--------CGAGGTCTGTAGTTGATCGTGTGTGT
ACAGTGACGATATTAAATCGAATTCATACATTTCATGTCCATTCGTTTGCATTTGCATTCGTGTTTTTTCTTTTTGTGCA
TATGCGATCGAGTATATAGCAAAAAAAAACTACCACATTATAGACTATCATTTTAAAAAACTATC-TTTTTTTTAATCTT
TCAAAAAACTACCACAAAAGTGATAGGCTGTTCC-GAAAAACCCAAATGACCAGGCAATTTAGAAATAATCCGGTTTATG
ATAGGTCAGGCCCGCTCTTAAACAAATCGTTAGTTGACTGTTTGTTTGACCGTTAACTTACATCTGGGCCACATGGGCCA
CATGTAAGTTCTCTCTCTC--ACCCTTATCTTCCTTCTCCCCCTCTTCTTCCCTATCACTCTCCCGAGCCATTGCCGGGC
ACCATCAAGGGCTGCCGCAGCCAGCACCACACCCCGGCACAGCCACGGCCGCCGCCACCTAGGCCGGCCACCACCACGCT
ATGGACACGAAGA---TGGAAAGAGGGCGGTGGATGGGCAGCTCAGAG-------CGGCCCGCTGGTGGTCGGAGTCGAG
CTCGTACTCCATGACAGCACCCACGCCGCCG-------------------------CAGAGAGGACGGGAAGG-------
---------------AGCTCCGCGCCGCCGGACGCCACCAGGACGCGCCTCGCTTAGCTTCGCGCCGCCGGACAGCTCCA
CGCCGGCAGGACGCGGCTCTGCCTAGCTCCGCCCAGCAGAAAGGAGGAGGAGCTCCACACCGCCGCCGCTTAGCTCCGCG
CCGCCGGACAGCTCGAGCACGGGCGGAGAGCAGCCAAGGAGCACGGCCGGTTCCAGCCCGCCGCCGCTGCTGATTCCCGC
CGGCCACGGCTGTTGCAGCTAGTAGCCATCTACTCCGGGCG
>chr3A_1
TCCATAGATCAACCAAACGGAGAATGCTGACTCATGTGCTTTGTTCGCTATTTTAAGTTTTAAACCCTTGTATTTTAAAA
AAGT---TACT---------------------------------------------------------------------
------------ACTCATCAATCGACAGTTCACAGTTGGACTGTACG-----ACCATGAAATCTTCTAGAGCTAGTAATA
AAAACATCCGT---------------------------------------------------------------------
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---------------------------------------------------------AAAGATGGCTGCAAAAAAAAATA
GTATCCGTATGGAGCAGCTCGCGGTCGCCATAGCAATAGCCAAACCTCAGAACACACC---------TCCCACCATTTGC
ACAGCCGCGCGCGGCGGAGGCCAGCAGAGCAGGACGGCAGAGTCGTT---------------------------------
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-------------------------------GGCACCCACCATGTGCCATTGCCGGCTGCCGCGCGAATAATTCGCCGGC
CCAGCGCAGCGACGGGCCCCGCACCAACTCCT-CCACCCCACGTACCGGCGCCGGAAATCACTCGCGCACGCGCCATGAA
CCCAAGCCAGCCACGCGACAGCCGGCCGTCCTCCCGTTCGCCAGCTTATATTAGGCAGGCCGGCCCAACCGCAGCTGTAT
ATAAGCACCTCCCCGGCTTCTCCGTCGAAGCAGCGACACCGGCGTCAATCAGCAGCAACAAGGCGCCTTCCTCGCCCTCC
TCAAGCAAGCGAGAAGCCAAGTCACGAAGATGGCAGGGCAGTTGAAGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTG
GTCGTCGCCTCGTCCCTGGTCGGCATGGCCTCCGCGGCCGACGCGCCCGCCGTGTCGCCCACCTCCGGCGCCACCGCCGC
GCCGCCCACCTCCGGCGCCGCCGGCGCCGCCCCGGCCTTCGCCGCCGTGTCCGTCGCCGCCACGGCGTTCGGCTACCTCT
TCTGCTAGGCGTGCGCCCATATGGCGCCCGGTTTGGTGCCGCGG--CGCGCGCGTGCATGCTCTTCTTTTCTGGCATTTG
TTGTTGTGGGTTCATGGGCGTTCCGGTGCAACTTCGTTTCTTGGTT--------CGAGGTCTGTAGTTGATGGTGTGTGT
ACAGTGACGATATTAAATTGAATTCATACGTTTCATCTTCATTCGTTTGCATTTGCATTCGTGTTTTTTCTTTCTGTGCA
TACGCGATC-----------------------------------------------------------------------
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>chr3B_1
TCCATAGATCAACCAAACGGAGAATGCTGACTCATGTGCTTTGTTCGCTATTTTAAGTTTTAAACCCTTGTATTTTTAAA
AAGTTACTACT---------------------------------------------------------------------
------------ACTCATCAATCGACAGT---------------ACG-----ACCATGAAATCTTCTAGAGCTAGGAATA
AAAGCATGCGTGAAGACTGCTTTGCGATGGATGAGGACTTGATGCACGCGCTAGTGCATTGCTCTCATGCCAAATTATTT
TGGGAACAAGCATATGAGTTACTTGGTGTTCGTAGACCTCACTTGCACCCAGATACATGGTCCAGAGATATAATTTGTGA
CGCTCAGTTCACAGATATTGAAAGAGCTCAAATGATCTCCATTATGTGGGCAATATGGCACTCCAGGAACAGAATTACTC
ATGATGGAGAACAGCTTGACCCTCTTATAACAGTGAGACGCATCAGAAAAGACTTGGCGGTGCTTGATATTCCTTCTGCA
CATGCTTCGGTCCTCCCTGGACATGGTTGGCGACCGCCAGATGCGGGCTTTGTGAAAATTAACACTGATGTCGCTCTCAA
CATGGATTCAGACAAGGTAGGAGCAGGTGGTGTGGCACGCTCTGACTCTGCCTTGTTGGAAGCTTGGAGTAAACCACACG
TTGGGGTAACGGATCCATTCATCGGTGAGACCCTGGCAATTCGTGATGGTGTTATCTTTGCTACTCTACGGGTTTTTTCA
CATGTGATAATGGAGACAGACTGCCTGGAGGTCGTCCACCTCTGGAACACTCGCCACGATATCTTTCTATAGTGGCACCT
TTATTGTTAGAAATTGGAGAGCTAGCTTTCTCTTTTTCTTCTTTTGTTATTCAACATGTAAACAGATCAGCCAATGTGCC
GGCCCATCTTTGCGCGAAGCATGCTTGCTCGTTGATGGTCATCGAAAGTTGAACTGGTTCTAGACCTACCTTCCTACTCA
CCAGCCTATTGACTGATGATGCTAGGAGCTCTTTTGTTGAATAAAGGCTCTCAAAAAAAAGACTGCTGTACAAATTC---
--ATCCGTATGGAGCAGCTCGCGGTCGCCATAGCAATTGCCAA------------ACC---------TCCCACCGTTTGC
ACAGCCGCGCGCGGCGGAGGCCAGCAGAGCAGAACGGCAGAGTCGTT---------------------------------
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-------------------------------GCCACCCACCATGTGCAATTGCCGGCTGCCGCCCGAATAATTCGCCGGT
CCAGCGCAGCGACGGGCCCCGCACCAACTCCCCCCACCCCACGTACCGGCGCCGGAAATCACTCGCGCACGCGCCATGAA
CCCAAGCCAGCCACGCGACAGCCGGCCGTCCTCCCGTTCGCCAGCTTATATTAGGCAGGCCGGCCTAATCGCAGCTGTAT
ATAAGCCGCTCCCACGCTTCTCCGTCGAAGCACCAACACCGGCGTCAATCAACAGCAACAAGGCGCCTTCCTCGCCCTCC
TCAAGCAAGCGAGAAGCCAAGTCACGAAGATGGCAGGGCAGTTGAAGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTG
GTCGTCGCCTCGTCACTGGTCGGCACGGCCTCCGCGGCCGACGCGCCCGCCGTGGCGCCCACCTCCGGCGCCACCGCCGC
GCCGCCCACCTCCGGCGCCACCGGCGCCGCCCCGGCCTTCGCGGCCGTGTCGGTCGCGGCCGCGGCGTTCAGCTACCTCT
TCTGCTAGGCGTGCGTCCATATGGCGCCCGG-TTGGTGCCGCGGTGCGCGCGCG--CATGCTATTCTTTTCTGGGATTTG
TTGTTGTGGATTCATGAACGTTCCGGTGCAATTTCGTTTCTTGGTTCGAGCCTTCGAGGTCTGTAGTTGATCGTGTGTGT
ACAGTGACGATATTGAATTGAATTCATACGTTTCATGTTCATTCGTTTGCGACTTGCA----------------------
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>chr3B_1446
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------ATTGAGTATATAGCAAAAAA---CTATCACATTACAGGCTATCGTTTCAAAAAACTACCGTTTTTTTTAATCTT
TCAAAAAACTACCACAAAAGTGATGGGCTGTTCC-AAAAAGCCCAAATGACCAAGCAATTGGGAAATAATCCAGTTTATG
ACAGGTCGGGCCCGCTCCTAAACAAACCGTTAGTTGACTGTTTGTTTGACCATTAACTTACATTTGGATC-------CCA
CATGTAAGTACTCTCTCTCTCACCCTTATCTTCCTTCTCTCCCTCTTCTTCCCTATCACTCTCCCGAGCCATTGCTGGGC
ACCATCACGGGCTGCCGCAGTCAGCACCACACCA-GGCACAGCCACGGCCACCGCCACCTGGGCCGGCCACCACCATGCT
ATGGACACGAAGA---TGGGAAGAGGGCGGCGGATGGGCAGCTCAGAG-------CGGCCCGCTGGTGGTCGGAGTTGAG
CTCGTACTCCATGGCAGCACCCACGCCGCCGTCTCCTGCTACGCTCCGCGCCGCCGCAGAGAGGAGGTGAAGGAGCTCCG
CCCCGCCGCCTGCTTAGCTCCGCGCCGCCGGACGCCACAAGGACGCGCCTAGCTTAGCTTTGCGTCGCCAGACAGCTCCA
CGCCGGCTGGACGCGGCTCTGCCTAGATCCGCCCAGCAGAGAGGAGGAGGAGG------------------AGCTCCGCG
CCGCCGGACAGCTCGAGCACGGGCGGGGAGCAGCCAAGCAGCACGGCCGGTTCCAGCCCGCTGCCGCTGCTGATTCCCGC
CGGCCATGGCTGTCGCAGCCAGCAGCCATCTTCTCCAGGCG
>chr7D_1447
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-------TCGAGTATATAGCAAAAAA---CTACCACATTACAAGCTATGTCTACAAAAAA-TATC-ATTTTTTTAATCTT
TCAAAAATCTATCACAAAATTGGTTCGTTGTTCCAAAAAAACCCAAATGACCAGATGCTTTAGAATTAATCTGGTTTATG
ACAGGTCAGGCCCGCTCCTAAACAAACCGTCAGTTGACTGTTTGTTTGACCGTTAACTTACATATGGGTC-------CCA
CATGTAAGTGCTATCTCTC--TCCCTTATCTTTCTTCTCTCCCTCTTCTTCCCTGTCACTTTTTCGAGCCATTGCCGGGC
ACCACCACGGGCTGCCGCAGCCAGCACCACGCCC-CGCGCAGCCACGGCCGCCACCGCCAGGGCCGGCCACCACCACGCC
ATGGACACGAAGAAGATGGAAAGAGGGCGGCGGATGGGCGGCTCAGAG-------CGGCTCGCTGGTGGTCGGAGTCGAG
CTCGTACTACATGGCAGTACCCACGCCGCCGTCGCCTGCTTCACTCGACGCCGCCGCAGAGAGGAGG---AGG-------
---------------AGCTCCGCGCCGCCGGACGCCACCAGGACATGCCTCGCTT------------------AGCTCCG
CGCCAGCAGGACGTGGCTCTGCTTAGCTCCGCCCAGCAGAGAGGAGGA---GG------------------AGCTCCGCG
CCGCTGGACAACTCGAGCACGGGCGGGGAGAAGCCAGGGAGCACGGCCGGTTCCAGCCCGCTGCCGCTACTGATTCCCGC
CGGCCACGGCTGTCACGGCCAGCAGCCATCTACT-------
>chr2B_1602
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----GTTAGGCCCGCTTCTAAACAAACCGTTAGTTGACTGTTTGTTTGACCGTTAACTTACATTTAGGTC-------CCA
CATGTAAGTGCTCTCCCTC--TCTCTTATCTTTCTTCTCTCCCTCTTCTTCCCTATCACTCTCCCGAGCCATTACCGGGC
ACCACCACGGCCTACCGCAGCCAGCACCACGCCC-GACGTAGCCACGGCCACCGCCACTAGGGCCGGCCACCACCACGCC
ATGGAGACGTAGAAGATGGAAAGAGGGCGGAGGAAGGGTGGCTCAGAGGTCAGAGCGGCTCGCTGGTGATCGGAGTCGAG
CTCGTACTCCATGGCAGAACCCACGCCACCGTCGCCTGCTTTGCTCCGCGCAGCCGCAGAGAGGAGG---AGG-------
---------------AGCTCCGCGCTGCCGGACGCCACCAGGACGCGCCTAACTTAGCTCCACGCCGCCGGACAGCTCCG
CGCCAGCAGGACGCGGCTCTGCTTAGGTCCTCCCAGCAGAGAGGAGGA---GG------------------AGCTCCGCG
CCGCCGGACAGCTTGAGCACGGGCGGGGAGGAGCCAGGGAGCACGGCCGGTTCCAGCCCGCCGCCGCTGCTGATTCTCGC
CGGCCACGACTGTCACGGCGAGCAGCCATCTACTCCGGGCG
>SNPs
-----------------------------------------------S-------------S-------SS---------
--------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S------------------------S----SSSSSSS----------------------------
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---------------------------------------------------------------S----------------
--------------------S----------S-----S--S---------S----S-SSSSSSSSSS------------S
------------------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
------------------------------------------------------------------S-------------
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-S--------------------S---------------------------------------------------------
------------------S-------------------------------------------------------------
------------S-------------------------------------------------------------------
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------------------S----------S--------S----------------------------------S------
--S-----------------------SSS-----------S--S-----S---S--------------------------
------------------------S----------S--------------------------------------------
-S---------------S--------S------------------------------------S----S-SSSSSSS---
---------S-----------------------------S----------------------------------------
-------S--------------------------S-------------------------S-------------------
------------------------------S-------------------------------------------------
-------------S---------------------------------------------------S-S------------
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----------------------------------------S-----------SSSSSSSSSSSSSSSSSSS---------
--------------------------S-----------------------------------------------------
-------------S-----S--S------------------
>forward_1378
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------------------------------------------------------------------------------CG
AACACGTAAAAGCCCGTC--------------------------------------------------------------
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>reverse_2425
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------------------------AGGCTGTTCCGAAAAACCCA------------------------------------
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