Multiple sequence alignment - TraesCS3D01G307900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G307900 chr3D 100.000 4111 0 0 1 4111 421662426 421666536 0.000000e+00 7592.0
1 TraesCS3D01G307900 chr3D 100.000 56 0 0 3804 3859 421666284 421666229 2.020000e-18 104.0
2 TraesCS3D01G307900 chr3D 92.157 51 2 2 3829 3879 600716025 600716073 2.050000e-08 71.3
3 TraesCS3D01G307900 chr3A 90.139 2951 147 48 910 3804 529209600 529206738 0.000000e+00 3705.0
4 TraesCS3D01G307900 chr3A 85.547 512 48 11 1 487 529214075 529213565 2.830000e-141 512.0
5 TraesCS3D01G307900 chr3A 96.032 252 7 1 3860 4111 529206736 529206488 1.380000e-109 407.0
6 TraesCS3D01G307900 chr3A 82.329 498 44 23 361 821 529213663 529213173 3.850000e-105 392.0
7 TraesCS3D01G307900 chr3A 88.679 53 5 1 3820 3871 416192298 416192350 3.430000e-06 63.9
8 TraesCS3D01G307900 chr3B 91.334 2527 129 29 975 3467 549023515 549025985 0.000000e+00 3371.0
9 TraesCS3D01G307900 chr3B 94.862 253 9 2 3860 4111 549032545 549032794 3.850000e-105 392.0
10 TraesCS3D01G307900 chr3B 78.063 351 38 18 3466 3804 549032220 549032543 7.020000e-43 185.0
11 TraesCS3D01G307900 chr7A 77.924 684 84 38 1257 1920 450088557 450089193 8.400000e-97 364.0
12 TraesCS3D01G307900 chr6D 79.640 555 69 27 1221 1754 68729132 68729663 3.910000e-95 359.0
13 TraesCS3D01G307900 chr5B 89.394 66 6 1 3794 3859 386653856 386653920 9.470000e-12 82.4
14 TraesCS3D01G307900 chr5B 92.857 42 1 2 3796 3837 496801933 496801894 4.440000e-05 60.2
15 TraesCS3D01G307900 chr2B 78.626 131 21 5 3625 3749 47643607 47643736 3.410000e-11 80.5
16 TraesCS3D01G307900 chr6B 91.525 59 1 4 3804 3862 447894964 447895018 1.230000e-10 78.7
17 TraesCS3D01G307900 chr6B 87.097 62 5 3 3803 3863 289177460 289177519 2.650000e-07 67.6
18 TraesCS3D01G307900 chr4D 86.111 72 2 4 3797 3861 19465616 19465546 2.050000e-08 71.3
19 TraesCS3D01G307900 chr1D 87.931 58 7 0 3803 3860 22889955 22889898 7.370000e-08 69.4
20 TraesCS3D01G307900 chr1D 95.238 42 1 1 3796 3837 58438879 58438839 9.540000e-07 65.8
21 TraesCS3D01G307900 chr1A 93.333 45 1 2 3797 3840 584993932 584993975 9.540000e-07 65.8
22 TraesCS3D01G307900 chr2A 91.304 46 2 2 3826 3870 17927535 17927579 1.230000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G307900 chr3D 421662426 421666536 4110 False 7592.0 7592 100.00000 1 4111 1 chr3D.!!$F1 4110
1 TraesCS3D01G307900 chr3A 529206488 529214075 7587 True 1254.0 3705 88.51175 1 4111 4 chr3A.!!$R1 4110
2 TraesCS3D01G307900 chr3B 549023515 549025985 2470 False 3371.0 3371 91.33400 975 3467 1 chr3B.!!$F1 2492
3 TraesCS3D01G307900 chr3B 549032220 549032794 574 False 288.5 392 86.46250 3466 4111 2 chr3B.!!$F2 645
4 TraesCS3D01G307900 chr7A 450088557 450089193 636 False 364.0 364 77.92400 1257 1920 1 chr7A.!!$F1 663
5 TraesCS3D01G307900 chr6D 68729132 68729663 531 False 359.0 359 79.64000 1221 1754 1 chr6D.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 838 0.179100 TTGCATCGCTCAGACCTAGC 60.179 55.0 0.0 0.0 36.60 3.42 F
1650 5299 0.030908 CTCCCTAGTTCCGATGACGC 59.969 60.0 0.0 0.0 38.29 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2564 6274 0.466372 GCCCTCTAATTCCCACAGGC 60.466 60.0 0.0 0.0 0.00 4.85 R
3436 7146 0.381801 GTGCCCAACTGACAACACAG 59.618 55.0 0.0 0.0 42.78 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.375908 GTTGCGAGCTCCACCATCA 60.376 57.895 8.47 0.00 0.00 3.07
76 77 2.629617 CACCTTGCCCTTCTTGTCAAAT 59.370 45.455 0.00 0.00 0.00 2.32
82 83 5.860941 TGCCCTTCTTGTCAAATAAAACA 57.139 34.783 0.00 0.00 0.00 2.83
120 121 1.615392 GTTCCCTGAAGCTGCATTGTT 59.385 47.619 0.00 0.00 0.00 2.83
127 128 0.877071 AAGCTGCATTGTTGAGGACG 59.123 50.000 1.02 0.00 0.00 4.79
150 151 2.912967 GCTTGTCATTCTGCATTGAACG 59.087 45.455 0.00 0.00 0.00 3.95
164 165 4.320202 GCATTGAACGTATGAACAACAGGT 60.320 41.667 0.94 0.00 0.00 4.00
165 166 5.382303 CATTGAACGTATGAACAACAGGTC 58.618 41.667 0.00 0.00 0.00 3.85
166 167 4.061357 TGAACGTATGAACAACAGGTCA 57.939 40.909 0.00 0.00 0.00 4.02
167 168 4.443621 TGAACGTATGAACAACAGGTCAA 58.556 39.130 0.00 0.00 0.00 3.18
168 169 5.060506 TGAACGTATGAACAACAGGTCAAT 58.939 37.500 0.00 0.00 0.00 2.57
169 170 5.049749 TGAACGTATGAACAACAGGTCAATG 60.050 40.000 0.00 0.00 0.00 2.82
170 171 4.637276 ACGTATGAACAACAGGTCAATGA 58.363 39.130 0.00 0.00 0.00 2.57
171 172 5.060506 ACGTATGAACAACAGGTCAATGAA 58.939 37.500 0.00 0.00 0.00 2.57
173 174 6.023435 CGTATGAACAACAGGTCAATGAATG 58.977 40.000 0.00 0.00 0.00 2.67
182 203 5.819991 ACAGGTCAATGAATGTACCTTGAT 58.180 37.500 1.06 0.00 37.42 2.57
184 205 5.882000 CAGGTCAATGAATGTACCTTGATCA 59.118 40.000 0.00 0.00 37.42 2.92
199 220 3.832615 TGATCAGTGAGCATGCATACT 57.167 42.857 21.98 19.57 0.00 2.12
230 251 6.079424 GTAGGCACTCTTATTCCTACTCTG 57.921 45.833 9.37 0.00 44.63 3.35
238 259 8.356657 CACTCTTATTCCTACTCTGGTCATAAG 58.643 40.741 0.00 0.00 35.35 1.73
260 281 0.318869 CAAAGCATGGAAGCACGCAA 60.319 50.000 0.00 0.00 36.85 4.85
271 292 4.036262 TGGAAGCACGCAATATGGATTAAC 59.964 41.667 0.00 0.00 0.00 2.01
295 316 4.262463 CCGATTAGAGGGGAATCAAATCGA 60.262 45.833 14.72 0.00 45.08 3.59
296 317 5.297547 CGATTAGAGGGGAATCAAATCGAA 58.702 41.667 9.04 0.00 45.08 3.71
299 320 3.733337 AGAGGGGAATCAAATCGAATCG 58.267 45.455 0.00 0.00 0.00 3.34
303 324 3.437049 GGGGAATCAAATCGAATCGGATC 59.563 47.826 1.76 0.00 0.00 3.36
334 356 3.754188 AAAACTGATCAGATGCGCTTC 57.246 42.857 29.27 15.04 0.00 3.86
339 361 0.228238 GATCAGATGCGCTTCGTTCG 59.772 55.000 16.59 7.89 0.00 3.95
355 377 2.066262 GTTCGGTCTCAAATCGAAGCA 58.934 47.619 0.00 0.00 42.38 3.91
357 379 2.270923 TCGGTCTCAAATCGAAGCATG 58.729 47.619 0.00 0.00 0.00 4.06
360 382 2.162208 GGTCTCAAATCGAAGCATGCAA 59.838 45.455 21.98 2.23 0.00 4.08
361 383 3.166657 GTCTCAAATCGAAGCATGCAAC 58.833 45.455 21.98 12.09 0.00 4.17
388 442 3.179443 TGCCTAAATCGAAGCCTACAG 57.821 47.619 0.00 0.00 0.00 2.74
409 463 4.388165 CAGCTACAATTGATGCCTAGATCG 59.612 45.833 13.59 0.00 0.00 3.69
410 464 4.281941 AGCTACAATTGATGCCTAGATCGA 59.718 41.667 13.59 0.00 0.00 3.59
414 468 4.051237 CAATTGATGCCTAGATCGACGAA 58.949 43.478 0.00 0.00 0.00 3.85
427 481 7.534578 CCTAGATCGACGAATACAACTACAATC 59.465 40.741 0.00 0.00 0.00 2.67
458 512 8.328864 CCTAAATCGAAGCTTACAACTACAATC 58.671 37.037 0.00 0.00 0.00 2.67
500 554 7.169158 ACAACTACAATCATGTAAAATGGGG 57.831 36.000 0.00 0.00 41.36 4.96
505 559 6.720112 ACAATCATGTAAAATGGGGAGATG 57.280 37.500 0.00 0.00 38.24 2.90
512 566 4.229582 TGTAAAATGGGGAGATGGCTAACT 59.770 41.667 0.00 0.00 0.00 2.24
526 580 1.705337 CTAACTGCCATTGCCGGACG 61.705 60.000 5.05 0.00 36.33 4.79
527 581 2.457743 TAACTGCCATTGCCGGACGT 62.458 55.000 5.05 0.00 36.33 4.34
530 584 4.101790 GCCATTGCCGGACGTGTG 62.102 66.667 5.05 0.00 0.00 3.82
543 597 0.674534 ACGTGTGAAGGAGAGGTGAC 59.325 55.000 0.00 0.00 0.00 3.67
545 599 0.674534 GTGTGAAGGAGAGGTGACGT 59.325 55.000 0.00 0.00 0.00 4.34
546 600 1.068741 GTGTGAAGGAGAGGTGACGTT 59.931 52.381 0.00 0.00 0.00 3.99
547 601 1.068588 TGTGAAGGAGAGGTGACGTTG 59.931 52.381 0.00 0.00 0.00 4.10
550 604 2.047179 GGAGAGGTGACGTTGCCC 60.047 66.667 5.83 0.00 0.00 5.36
552 606 1.371558 GAGAGGTGACGTTGCCCTT 59.628 57.895 5.83 0.00 0.00 3.95
553 607 0.250338 GAGAGGTGACGTTGCCCTTT 60.250 55.000 5.83 0.00 0.00 3.11
558 621 1.527380 TGACGTTGCCCTTTGTCCC 60.527 57.895 0.00 0.00 0.00 4.46
570 633 0.608035 TTTGTCCCGATCTTGCCACC 60.608 55.000 0.00 0.00 0.00 4.61
579 642 3.869272 CTTGCCACCGATGCTCGC 61.869 66.667 0.72 0.00 38.82 5.03
580 643 4.393155 TTGCCACCGATGCTCGCT 62.393 61.111 0.72 0.00 38.82 4.93
591 654 4.724602 GCTCGCTGTCGGTGCTCA 62.725 66.667 0.00 0.00 36.13 4.26
592 655 2.505777 CTCGCTGTCGGTGCTCAG 60.506 66.667 0.00 0.00 36.13 3.35
593 656 3.274455 CTCGCTGTCGGTGCTCAGT 62.274 63.158 0.00 0.00 36.13 3.41
594 657 2.807045 CGCTGTCGGTGCTCAGTC 60.807 66.667 0.00 0.00 34.57 3.51
595 658 2.807045 GCTGTCGGTGCTCAGTCG 60.807 66.667 0.00 0.00 34.57 4.18
608 694 1.735018 CTCAGTCGTCGATGAGAGTGT 59.265 52.381 20.70 0.00 44.68 3.55
609 695 1.464997 TCAGTCGTCGATGAGAGTGTG 59.535 52.381 7.79 1.47 38.55 3.82
629 715 2.024414 GAAGAGAGGAGAGAGTGAGCC 58.976 57.143 0.00 0.00 0.00 4.70
633 719 0.752054 GAGGAGAGAGTGAGCCATGG 59.248 60.000 7.63 7.63 0.00 3.66
640 726 0.179936 GAGTGAGCCATGGGAGAAGG 59.820 60.000 15.13 0.00 0.00 3.46
646 732 2.825836 CATGGGAGAAGGGTGCGC 60.826 66.667 0.00 0.00 0.00 6.09
663 749 2.972505 CGGATTTATGGCGCCGCT 60.973 61.111 23.90 14.61 37.08 5.52
667 753 2.443957 GATTTATGGCGCCGCTTCCG 62.444 60.000 23.90 0.00 0.00 4.30
687 773 0.857287 GAAACAACACGACGTCTCCC 59.143 55.000 14.70 0.00 0.00 4.30
690 776 4.695231 AACACGACGTCTCCCGCG 62.695 66.667 14.70 0.00 41.42 6.46
726 812 2.486504 CGCATCCACCACACATGC 59.513 61.111 0.00 0.00 39.70 4.06
743 829 4.422506 CGTTGTGTTGCATCGCTC 57.577 55.556 9.58 2.86 34.19 5.03
745 831 0.451628 CGTTGTGTTGCATCGCTCAG 60.452 55.000 9.58 0.00 34.19 3.35
746 832 0.867746 GTTGTGTTGCATCGCTCAGA 59.132 50.000 9.58 0.00 0.00 3.27
747 833 0.867746 TTGTGTTGCATCGCTCAGAC 59.132 50.000 9.58 0.00 0.00 3.51
750 836 0.894835 TGTTGCATCGCTCAGACCTA 59.105 50.000 0.00 0.00 0.00 3.08
752 838 0.179100 TTGCATCGCTCAGACCTAGC 60.179 55.000 0.00 0.00 36.60 3.42
753 839 1.039785 TGCATCGCTCAGACCTAGCT 61.040 55.000 0.00 0.00 37.85 3.32
754 840 0.318614 GCATCGCTCAGACCTAGCTC 60.319 60.000 0.00 0.00 37.85 4.09
755 841 1.317613 CATCGCTCAGACCTAGCTCT 58.682 55.000 0.00 0.00 37.85 4.09
756 842 1.680735 CATCGCTCAGACCTAGCTCTT 59.319 52.381 0.00 0.00 37.85 2.85
761 847 4.219944 TCGCTCAGACCTAGCTCTTAAAAA 59.780 41.667 0.00 0.00 37.85 1.94
782 868 0.951558 ACTGCCGATTCAAGCGTTTT 59.048 45.000 0.00 0.00 0.00 2.43
784 870 1.978782 CTGCCGATTCAAGCGTTTTTC 59.021 47.619 0.00 0.00 0.00 2.29
785 871 0.974836 GCCGATTCAAGCGTTTTTCG 59.025 50.000 0.00 2.93 43.12 3.46
786 872 1.602191 CCGATTCAAGCGTTTTTCGG 58.398 50.000 11.53 11.53 39.98 4.30
787 873 1.195900 CCGATTCAAGCGTTTTTCGGA 59.804 47.619 17.46 0.00 46.84 4.55
796 882 1.601914 GCGTTTTTCGGAAGCCATGTT 60.602 47.619 0.00 0.00 40.26 2.71
797 883 2.050691 CGTTTTTCGGAAGCCATGTTG 58.949 47.619 0.00 0.00 35.71 3.33
805 891 2.733227 CGGAAGCCATGTTGAGAAATGC 60.733 50.000 0.00 0.00 0.00 3.56
821 907 7.147312 TGAGAAATGCTTTAAGTTTCACATGG 58.853 34.615 9.62 0.00 35.00 3.66
822 908 7.014134 TGAGAAATGCTTTAAGTTTCACATGGA 59.986 33.333 9.62 0.00 35.00 3.41
823 909 7.899973 AGAAATGCTTTAAGTTTCACATGGAT 58.100 30.769 9.62 0.00 35.00 3.41
824 910 8.031277 AGAAATGCTTTAAGTTTCACATGGATC 58.969 33.333 9.62 0.00 35.00 3.36
825 911 5.295431 TGCTTTAAGTTTCACATGGATCG 57.705 39.130 0.00 0.00 0.00 3.69
826 912 5.000591 TGCTTTAAGTTTCACATGGATCGA 58.999 37.500 0.00 0.00 0.00 3.59
827 913 5.122239 TGCTTTAAGTTTCACATGGATCGAG 59.878 40.000 0.00 0.00 0.00 4.04
828 914 5.351465 GCTTTAAGTTTCACATGGATCGAGA 59.649 40.000 0.00 0.00 0.00 4.04
829 915 6.128282 GCTTTAAGTTTCACATGGATCGAGAA 60.128 38.462 0.00 0.00 0.00 2.87
830 916 7.414540 GCTTTAAGTTTCACATGGATCGAGAAT 60.415 37.037 0.00 0.00 0.00 2.40
831 917 9.098355 CTTTAAGTTTCACATGGATCGAGAATA 57.902 33.333 0.00 0.00 0.00 1.75
832 918 8.648557 TTAAGTTTCACATGGATCGAGAATAG 57.351 34.615 0.00 0.00 0.00 1.73
833 919 6.471233 AGTTTCACATGGATCGAGAATAGA 57.529 37.500 0.00 0.00 0.00 1.98
834 920 6.878317 AGTTTCACATGGATCGAGAATAGAA 58.122 36.000 0.00 0.00 0.00 2.10
835 921 6.983307 AGTTTCACATGGATCGAGAATAGAAG 59.017 38.462 0.00 0.00 0.00 2.85
836 922 6.471233 TTCACATGGATCGAGAATAGAAGT 57.529 37.500 0.00 0.00 0.00 3.01
837 923 6.078202 TCACATGGATCGAGAATAGAAGTC 57.922 41.667 0.00 0.00 0.00 3.01
838 924 5.010112 TCACATGGATCGAGAATAGAAGTCC 59.990 44.000 0.00 0.00 0.00 3.85
839 925 4.895889 ACATGGATCGAGAATAGAAGTCCA 59.104 41.667 0.00 1.39 38.50 4.02
840 926 5.363868 ACATGGATCGAGAATAGAAGTCCAA 59.636 40.000 2.95 0.00 37.76 3.53
841 927 5.932619 TGGATCGAGAATAGAAGTCCAAA 57.067 39.130 0.00 0.00 31.81 3.28
842 928 5.661458 TGGATCGAGAATAGAAGTCCAAAC 58.339 41.667 0.00 0.00 31.81 2.93
843 929 5.186992 TGGATCGAGAATAGAAGTCCAAACA 59.813 40.000 0.00 0.00 31.81 2.83
844 930 5.751028 GGATCGAGAATAGAAGTCCAAACAG 59.249 44.000 0.00 0.00 0.00 3.16
845 931 5.073311 TCGAGAATAGAAGTCCAAACAGG 57.927 43.478 0.00 0.00 39.47 4.00
846 932 3.619038 CGAGAATAGAAGTCCAAACAGGC 59.381 47.826 0.00 0.00 37.29 4.85
847 933 4.621747 CGAGAATAGAAGTCCAAACAGGCT 60.622 45.833 0.00 0.00 37.29 4.58
848 934 5.394224 CGAGAATAGAAGTCCAAACAGGCTA 60.394 44.000 0.00 0.00 37.29 3.93
849 935 6.567602 AGAATAGAAGTCCAAACAGGCTAT 57.432 37.500 0.00 0.00 37.29 2.97
850 936 7.470147 CGAGAATAGAAGTCCAAACAGGCTATA 60.470 40.741 0.00 0.00 37.29 1.31
851 937 8.090788 AGAATAGAAGTCCAAACAGGCTATAA 57.909 34.615 0.00 0.00 37.29 0.98
852 938 7.988028 AGAATAGAAGTCCAAACAGGCTATAAC 59.012 37.037 0.00 0.00 37.29 1.89
853 939 5.763876 AGAAGTCCAAACAGGCTATAACT 57.236 39.130 0.00 0.00 37.29 2.24
854 940 6.869206 AGAAGTCCAAACAGGCTATAACTA 57.131 37.500 0.00 0.00 37.29 2.24
855 941 6.641474 AGAAGTCCAAACAGGCTATAACTAC 58.359 40.000 0.00 0.00 37.29 2.73
856 942 5.007385 AGTCCAAACAGGCTATAACTACG 57.993 43.478 0.00 0.00 37.29 3.51
857 943 4.117685 GTCCAAACAGGCTATAACTACGG 58.882 47.826 0.00 0.00 37.29 4.02
858 944 3.133362 TCCAAACAGGCTATAACTACGGG 59.867 47.826 0.00 0.00 37.29 5.28
859 945 3.118519 CCAAACAGGCTATAACTACGGGT 60.119 47.826 0.00 0.00 0.00 5.28
860 946 4.117685 CAAACAGGCTATAACTACGGGTC 58.882 47.826 0.00 0.00 0.00 4.46
861 947 3.309600 ACAGGCTATAACTACGGGTCT 57.690 47.619 0.00 0.00 0.00 3.85
862 948 4.443978 ACAGGCTATAACTACGGGTCTA 57.556 45.455 0.00 0.00 0.00 2.59
863 949 4.396522 ACAGGCTATAACTACGGGTCTAG 58.603 47.826 0.00 0.00 0.00 2.43
864 950 4.141298 ACAGGCTATAACTACGGGTCTAGT 60.141 45.833 0.00 0.00 0.00 2.57
865 951 4.826183 CAGGCTATAACTACGGGTCTAGTT 59.174 45.833 2.27 2.27 39.71 2.24
866 952 4.826183 AGGCTATAACTACGGGTCTAGTTG 59.174 45.833 6.46 0.00 37.49 3.16
867 953 4.823989 GGCTATAACTACGGGTCTAGTTGA 59.176 45.833 6.46 0.00 37.49 3.18
868 954 5.048852 GGCTATAACTACGGGTCTAGTTGAG 60.049 48.000 6.46 5.29 37.49 3.02
869 955 5.048852 GCTATAACTACGGGTCTAGTTGAGG 60.049 48.000 6.46 0.00 37.49 3.86
870 956 2.895242 ACTACGGGTCTAGTTGAGGT 57.105 50.000 0.00 0.00 0.00 3.85
871 957 4.307032 AACTACGGGTCTAGTTGAGGTA 57.693 45.455 0.00 0.00 35.92 3.08
883 969 3.978687 AGTTGAGGTATATGCACGCTAC 58.021 45.455 0.00 0.00 0.00 3.58
884 970 3.057734 GTTGAGGTATATGCACGCTACC 58.942 50.000 11.47 11.47 36.05 3.18
886 972 2.296190 TGAGGTATATGCACGCTACCAG 59.704 50.000 18.41 0.00 37.88 4.00
887 973 1.000955 AGGTATATGCACGCTACCAGC 59.999 52.381 18.41 0.00 37.88 4.85
891 977 0.179111 TATGCACGCTACCAGCAGAC 60.179 55.000 0.00 0.00 42.58 3.51
893 979 3.181967 CACGCTACCAGCAGACGC 61.182 66.667 0.00 0.00 42.58 5.19
919 4539 7.612677 TCCCTTGCTAAAAACAAAACTAAACA 58.387 30.769 0.00 0.00 0.00 2.83
929 4549 2.551032 CAAAACTAAACAGACGTCCCCC 59.449 50.000 13.01 0.00 0.00 5.40
956 4576 8.119226 CGCTGTAGGAAAAATAATCTTTCTCAG 58.881 37.037 0.00 0.00 33.99 3.35
958 4578 8.807948 TGTAGGAAAAATAATCTTTCTCAGGG 57.192 34.615 0.00 0.00 33.99 4.45
959 4579 8.611257 TGTAGGAAAAATAATCTTTCTCAGGGA 58.389 33.333 0.00 0.00 33.99 4.20
961 4581 7.703755 AGGAAAAATAATCTTTCTCAGGGACT 58.296 34.615 0.00 0.00 34.10 3.85
962 4582 7.613411 AGGAAAAATAATCTTTCTCAGGGACTG 59.387 37.037 0.00 0.00 42.23 3.51
963 4583 7.394641 GGAAAAATAATCTTTCTCAGGGACTGT 59.605 37.037 0.00 0.00 41.89 3.55
1245 4875 0.325296 ACACGCCCTTCTCCCTCATA 60.325 55.000 0.00 0.00 0.00 2.15
1650 5299 0.030908 CTCCCTAGTTCCGATGACGC 59.969 60.000 0.00 0.00 38.29 5.19
1746 5408 6.889177 TGCAAAGTCATGATTTCCCTTACATA 59.111 34.615 3.69 0.00 0.00 2.29
1832 5499 1.867233 CGTGGTCAGTTTTGGTCTCAG 59.133 52.381 0.00 0.00 0.00 3.35
1890 5557 4.219033 GGTTTACACTGAATTGCGTCAAG 58.781 43.478 0.00 0.00 0.00 3.02
1994 5665 4.349342 AGCATTTTCAGGTAGGATAGAGGG 59.651 45.833 0.00 0.00 0.00 4.30
1999 5670 1.790157 CAGGTAGGATAGAGGGTCCCT 59.210 57.143 11.38 11.38 36.36 4.20
2008 5679 6.161167 AGGATAGAGGGTCCCTTGAAAATAT 58.839 40.000 13.13 4.39 36.36 1.28
2030 5701 4.568956 TCTGAAAGAATCATGCACTTCGA 58.431 39.130 0.00 0.00 42.31 3.71
2043 5714 2.404215 CACTTCGAGTGTAAGGTGTGG 58.596 52.381 6.79 0.00 41.19 4.17
2047 5727 2.828877 TCGAGTGTAAGGTGTGGTTTG 58.171 47.619 0.00 0.00 0.00 2.93
2063 5743 5.908831 TGTGGTTTGGGATAGGTATCTGTAT 59.091 40.000 0.00 0.00 33.28 2.29
2072 5752 7.093333 TGGGATAGGTATCTGTATGCAGTAATG 60.093 40.741 10.80 0.00 43.05 1.90
2079 5759 5.027293 TCTGTATGCAGTAATGATGTGCT 57.973 39.130 10.80 0.00 43.05 4.40
2082 5762 7.219322 TCTGTATGCAGTAATGATGTGCTAAT 58.781 34.615 10.80 0.00 43.05 1.73
2083 5763 7.386025 TCTGTATGCAGTAATGATGTGCTAATC 59.614 37.037 10.80 0.00 43.05 1.75
2109 5789 9.807649 CTTGATAAATATTTGAAGGAGGTTTGG 57.192 33.333 11.05 0.00 0.00 3.28
2110 5790 9.540538 TTGATAAATATTTGAAGGAGGTTTGGA 57.459 29.630 11.05 0.00 0.00 3.53
2111 5791 9.540538 TGATAAATATTTGAAGGAGGTTTGGAA 57.459 29.630 11.05 0.00 0.00 3.53
2132 5812 2.791253 TGGAAGCCCAATCTCCAGT 58.209 52.632 0.00 0.00 40.09 4.00
2133 5813 1.075601 TGGAAGCCCAATCTCCAGTT 58.924 50.000 0.00 0.00 40.09 3.16
2134 5814 1.428912 TGGAAGCCCAATCTCCAGTTT 59.571 47.619 0.00 0.00 40.09 2.66
2135 5815 2.158325 TGGAAGCCCAATCTCCAGTTTT 60.158 45.455 0.00 0.00 40.09 2.43
2136 5816 3.075283 TGGAAGCCCAATCTCCAGTTTTA 59.925 43.478 0.00 0.00 40.09 1.52
2137 5817 4.264352 TGGAAGCCCAATCTCCAGTTTTAT 60.264 41.667 0.00 0.00 40.09 1.40
2138 5818 4.339530 GGAAGCCCAATCTCCAGTTTTATC 59.660 45.833 0.00 0.00 0.00 1.75
2139 5819 4.870021 AGCCCAATCTCCAGTTTTATCT 57.130 40.909 0.00 0.00 0.00 1.98
2140 5820 4.530875 AGCCCAATCTCCAGTTTTATCTG 58.469 43.478 0.00 0.00 35.45 2.90
2141 5821 4.228210 AGCCCAATCTCCAGTTTTATCTGA 59.772 41.667 0.00 0.00 37.61 3.27
2142 5822 4.949856 GCCCAATCTCCAGTTTTATCTGAA 59.050 41.667 0.00 0.00 37.61 3.02
2143 5823 5.163612 GCCCAATCTCCAGTTTTATCTGAAC 60.164 44.000 0.00 0.00 37.61 3.18
2144 5824 5.945784 CCCAATCTCCAGTTTTATCTGAACA 59.054 40.000 0.00 0.00 37.61 3.18
2145 5825 6.094603 CCCAATCTCCAGTTTTATCTGAACAG 59.905 42.308 0.00 0.00 37.61 3.16
2185 5866 0.320946 ACACCAGCAATGCAAATGCC 60.321 50.000 20.45 6.68 44.91 4.40
2197 5878 1.618343 GCAAATGCCTACTTTGTGGGT 59.382 47.619 2.27 0.00 36.52 4.51
2210 5891 5.390387 ACTTTGTGGGTGGCTAGAAAATTA 58.610 37.500 0.00 0.00 0.00 1.40
2215 5896 5.777732 TGTGGGTGGCTAGAAAATTATTGTT 59.222 36.000 0.00 0.00 0.00 2.83
2224 5905 9.455847 GGCTAGAAAATTATTGTTCTGCATTAG 57.544 33.333 0.00 4.08 35.69 1.73
2228 5909 8.742777 AGAAAATTATTGTTCTGCATTAGAGCA 58.257 29.630 0.00 0.00 43.75 4.26
2229 5910 9.525409 GAAAATTATTGTTCTGCATTAGAGCAT 57.475 29.630 0.00 0.00 44.62 3.79
2230 5911 9.880157 AAAATTATTGTTCTGCATTAGAGCATT 57.120 25.926 0.00 0.00 44.62 3.56
2231 5912 8.867112 AATTATTGTTCTGCATTAGAGCATTG 57.133 30.769 0.00 0.00 44.62 2.82
2232 5913 5.909621 ATTGTTCTGCATTAGAGCATTGT 57.090 34.783 0.00 0.00 44.62 2.71
2233 5914 5.710513 TTGTTCTGCATTAGAGCATTGTT 57.289 34.783 0.00 0.00 44.62 2.83
2234 5915 5.050644 TGTTCTGCATTAGAGCATTGTTG 57.949 39.130 0.00 0.00 44.68 3.33
2235 5916 4.520111 TGTTCTGCATTAGAGCATTGTTGT 59.480 37.500 0.00 0.00 44.68 3.32
2236 5917 5.009911 TGTTCTGCATTAGAGCATTGTTGTT 59.990 36.000 0.00 0.00 44.68 2.83
2237 5918 5.710513 TCTGCATTAGAGCATTGTTGTTT 57.289 34.783 0.00 0.00 44.68 2.83
2238 5919 5.463286 TCTGCATTAGAGCATTGTTGTTTG 58.537 37.500 0.00 0.00 44.68 2.93
2239 5920 5.241285 TCTGCATTAGAGCATTGTTGTTTGA 59.759 36.000 0.00 0.00 44.68 2.69
2240 5921 5.840715 TGCATTAGAGCATTGTTGTTTGAA 58.159 33.333 0.00 0.00 40.11 2.69
2241 5922 6.279123 TGCATTAGAGCATTGTTGTTTGAAA 58.721 32.000 0.00 0.00 40.11 2.69
2242 5923 6.760298 TGCATTAGAGCATTGTTGTTTGAAAA 59.240 30.769 0.00 0.00 40.11 2.29
2243 5924 7.279536 TGCATTAGAGCATTGTTGTTTGAAAAA 59.720 29.630 0.00 0.00 40.11 1.94
2279 5960 3.354948 CCAATGACTGGGATCACTGAA 57.645 47.619 9.08 0.00 42.17 3.02
2310 5991 3.135348 TGAGCCCTCATCATCTTTACCTG 59.865 47.826 0.00 0.00 34.14 4.00
2320 6001 6.270695 TCATCATCTTTACCTGGCATCATCTA 59.729 38.462 0.00 0.00 0.00 1.98
2367 6048 3.068307 TCCCAAATACCGTTTGTTGTTGG 59.932 43.478 0.00 0.00 38.49 3.77
2390 6074 3.694566 CCTACTCCATTGGTTTGTTAGGC 59.305 47.826 1.86 0.00 0.00 3.93
2401 6085 5.477510 TGGTTTGTTAGGCTGCATTTATTG 58.522 37.500 0.50 0.00 0.00 1.90
2424 6108 9.844257 ATTGTTAAATCCCTTTTGAATTGTGAA 57.156 25.926 0.00 0.00 0.00 3.18
2425 6109 8.885494 TGTTAAATCCCTTTTGAATTGTGAAG 57.115 30.769 0.00 0.00 0.00 3.02
2426 6110 7.930865 TGTTAAATCCCTTTTGAATTGTGAAGG 59.069 33.333 0.00 0.00 38.67 3.46
2442 6126 4.640201 TGTGAAGGGCTGCATATAAAGTTC 59.360 41.667 0.50 0.00 0.00 3.01
2455 6139 2.509052 AAAGTTCTTTTTGGCTCGGC 57.491 45.000 0.00 0.00 0.00 5.54
2460 6144 3.308878 CTTTTTGGCTCGGCGGTCG 62.309 63.158 7.21 0.00 40.90 4.79
2476 6160 1.883926 GGTCGGGTGTGCTTATGTTTT 59.116 47.619 0.00 0.00 0.00 2.43
2478 6162 1.883275 TCGGGTGTGCTTATGTTTTGG 59.117 47.619 0.00 0.00 0.00 3.28
2488 6198 6.714810 TGTGCTTATGTTTTGGTGACTAGATT 59.285 34.615 0.00 0.00 0.00 2.40
2490 6200 8.175716 GTGCTTATGTTTTGGTGACTAGATTAC 58.824 37.037 0.00 0.00 0.00 1.89
2530 6240 4.394300 CAGACTGAGCTTACCATTTTCCAG 59.606 45.833 0.00 0.00 0.00 3.86
2533 6243 5.140454 ACTGAGCTTACCATTTTCCAGTTT 58.860 37.500 0.00 0.00 30.42 2.66
2562 6272 6.721318 TCTGAAAGACAAATATAAGGGCTGT 58.279 36.000 0.00 0.00 38.67 4.40
2563 6273 7.857456 TCTGAAAGACAAATATAAGGGCTGTA 58.143 34.615 0.00 0.00 38.67 2.74
2564 6274 7.987458 TCTGAAAGACAAATATAAGGGCTGTAG 59.013 37.037 0.00 0.00 38.67 2.74
2565 6275 6.542370 TGAAAGACAAATATAAGGGCTGTAGC 59.458 38.462 0.00 0.00 41.14 3.58
2593 6303 4.536765 GGAATTAGAGGGCTGATTGGAAA 58.463 43.478 0.00 0.00 31.25 3.13
2594 6304 4.956075 GGAATTAGAGGGCTGATTGGAAAA 59.044 41.667 0.00 0.00 31.25 2.29
2596 6306 6.239148 GGAATTAGAGGGCTGATTGGAAAATC 60.239 42.308 0.00 0.00 31.25 2.17
2597 6307 3.023939 AGAGGGCTGATTGGAAAATCC 57.976 47.619 0.00 0.00 36.96 3.01
2602 6312 3.118629 GGGCTGATTGGAAAATCCCTTTC 60.119 47.826 0.00 0.00 42.45 2.62
2605 6315 4.398044 GCTGATTGGAAAATCCCTTTCGTA 59.602 41.667 0.00 0.00 43.88 3.43
2619 6329 6.942976 TCCCTTTCGTAATCTTCACATAACT 58.057 36.000 0.00 0.00 0.00 2.24
2639 6349 6.561737 AACTTTCTTTAGGTCAGCTTTAGC 57.438 37.500 0.00 0.00 42.49 3.09
2670 6380 7.171630 TGGTTTATTAATTGCGGGTTATGTT 57.828 32.000 0.00 0.00 0.00 2.71
2672 6382 6.698329 GGTTTATTAATTGCGGGTTATGTTCC 59.302 38.462 0.00 0.00 0.00 3.62
2689 6399 4.211125 TGTTCCTGCCAACATTGACTTTA 58.789 39.130 0.00 0.00 31.08 1.85
2700 6410 8.836413 GCCAACATTGACTTTAACTATGCTATA 58.164 33.333 0.00 0.00 0.00 1.31
2810 6520 0.971959 AGCTCTCTCCTGCACTCCTG 60.972 60.000 0.00 0.00 0.00 3.86
2825 6535 1.959985 CTCCTGGTCATACGAGAGCAT 59.040 52.381 8.92 0.00 44.12 3.79
2861 6571 5.118990 AGAGTATGCATGCGAGTTAACATT 58.881 37.500 14.09 0.00 0.00 2.71
2948 6658 3.753846 GCCCTATCTTAGTGAGGAGCTCT 60.754 52.174 14.64 0.00 31.45 4.09
3192 6902 4.026356 ACAAGAATGTTGGCTAGCTTCT 57.974 40.909 15.72 12.23 35.91 2.85
3436 7146 9.383519 TCTCTTAAATATGTTGACAATGGAGTC 57.616 33.333 0.00 0.00 38.99 3.36
3475 7185 2.040412 ACACATTCCCTTCCTCTGTTCC 59.960 50.000 0.00 0.00 0.00 3.62
3548 7268 4.744137 CAGCAACAATCGAAATCACCAAAA 59.256 37.500 0.00 0.00 0.00 2.44
3560 7280 6.697019 CGAAATCACCAAAATTCAGTGTTCTT 59.303 34.615 0.00 0.00 33.21 2.52
3575 7295 2.941720 TGTTCTTGGTTTGCATTTTGGC 59.058 40.909 0.00 0.00 0.00 4.52
3611 7331 8.871686 AAACATTCACTAGAATTCAACCAAAC 57.128 30.769 8.44 0.00 42.46 2.93
3697 7420 7.602753 ACTGAAAGGCAAATATTTTAGTGTCC 58.397 34.615 0.00 0.00 39.30 4.02
3699 7422 7.957002 TGAAAGGCAAATATTTTAGTGTCCAA 58.043 30.769 0.00 0.00 0.00 3.53
3711 7452 7.815840 TTTTAGTGTCCAATGAAATCACTGA 57.184 32.000 0.00 0.00 39.27 3.41
3712 7453 7.815840 TTTAGTGTCCAATGAAATCACTGAA 57.184 32.000 0.00 0.00 39.27 3.02
3713 7454 8.408043 TTTAGTGTCCAATGAAATCACTGAAT 57.592 30.769 0.00 0.00 39.27 2.57
3714 7455 6.906157 AGTGTCCAATGAAATCACTGAATT 57.094 33.333 0.00 0.00 37.85 2.17
3715 7456 7.294017 AGTGTCCAATGAAATCACTGAATTT 57.706 32.000 0.00 0.00 37.85 1.82
3716 7457 7.729116 AGTGTCCAATGAAATCACTGAATTTT 58.271 30.769 0.00 0.00 37.85 1.82
3717 7458 8.859090 AGTGTCCAATGAAATCACTGAATTTTA 58.141 29.630 0.00 0.00 37.85 1.52
3718 7459 9.643693 GTGTCCAATGAAATCACTGAATTTTAT 57.356 29.630 0.00 0.00 0.00 1.40
3750 7491 7.502226 TCTCATTGAAAGTGAAAACCATACACT 59.498 33.333 0.00 0.00 45.02 3.55
3751 7492 7.424803 TCATTGAAAGTGAAAACCATACACTG 58.575 34.615 0.00 0.00 42.81 3.66
3806 7547 9.219603 TGAATCTTTCACGAGAAAATTGATACT 57.780 29.630 9.31 0.00 42.78 2.12
3807 7548 9.695884 GAATCTTTCACGAGAAAATTGATACTC 57.304 33.333 9.31 2.14 42.78 2.59
3808 7549 7.596749 TCTTTCACGAGAAAATTGATACTCC 57.403 36.000 9.31 0.00 42.78 3.85
3809 7550 6.594159 TCTTTCACGAGAAAATTGATACTCCC 59.406 38.462 9.31 0.00 42.78 4.30
3810 7551 5.677319 TCACGAGAAAATTGATACTCCCT 57.323 39.130 0.00 0.00 0.00 4.20
3811 7552 5.661458 TCACGAGAAAATTGATACTCCCTC 58.339 41.667 0.00 0.00 0.00 4.30
3812 7553 4.811557 CACGAGAAAATTGATACTCCCTCC 59.188 45.833 0.00 0.00 0.00 4.30
3813 7554 4.051922 CGAGAAAATTGATACTCCCTCCG 58.948 47.826 0.00 0.00 0.00 4.63
3814 7555 4.441634 CGAGAAAATTGATACTCCCTCCGT 60.442 45.833 0.00 0.00 0.00 4.69
3815 7556 5.024785 AGAAAATTGATACTCCCTCCGTC 57.975 43.478 0.00 0.00 0.00 4.79
3816 7557 3.840124 AAATTGATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
3817 7558 1.718280 ATTGATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
3818 7559 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
3819 7560 0.561184 TGATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
3820 7561 1.784593 TGATACTCCCTCCGTCCCATA 59.215 52.381 0.00 0.00 0.00 2.74
3821 7562 2.178325 TGATACTCCCTCCGTCCCATAA 59.822 50.000 0.00 0.00 0.00 1.90
3822 7563 3.181410 TGATACTCCCTCCGTCCCATAAT 60.181 47.826 0.00 0.00 0.00 1.28
3823 7564 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3824 7565 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3825 7566 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3826 7567 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3827 7568 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3828 7569 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3829 7570 3.389983 CCCTCCGTCCCATAATGTAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
3830 7571 4.377897 CCTCCGTCCCATAATGTAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
3831 7572 4.049186 CTCCGTCCCATAATGTAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
3832 7573 3.448301 TCCGTCCCATAATGTAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
3833 7574 4.081531 TCCGTCCCATAATGTAAGAACGTT 60.082 41.667 0.00 0.00 38.41 3.99
3834 7575 4.269363 CCGTCCCATAATGTAAGAACGTTC 59.731 45.833 20.71 20.71 36.28 3.95
3835 7576 5.107133 CGTCCCATAATGTAAGAACGTTCT 58.893 41.667 24.93 24.93 39.74 3.01
3837 7578 6.753279 CGTCCCATAATGTAAGAACGTTCTTA 59.247 38.462 35.56 35.56 45.17 2.10
3848 7589 6.980051 AAGAACGTTCTTACATTATGGGAC 57.020 37.500 35.80 3.16 45.17 4.46
3849 7590 5.107133 AGAACGTTCTTACATTATGGGACG 58.893 41.667 24.93 0.00 32.55 4.79
3850 7591 3.788937 ACGTTCTTACATTATGGGACGG 58.211 45.455 5.92 0.00 0.00 4.79
3851 7592 3.448301 ACGTTCTTACATTATGGGACGGA 59.552 43.478 5.92 0.00 0.00 4.69
3852 7593 4.049186 CGTTCTTACATTATGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
3853 7594 4.377897 GTTCTTACATTATGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
3854 7595 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3855 7596 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3856 7597 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3857 7598 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3858 7599 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3897 7638 2.226674 GCTTGGTGTGGTTTCTAGCTTC 59.773 50.000 0.00 0.00 0.00 3.86
3959 7701 0.317160 TTGTCTTCCGTGAGCGTGAT 59.683 50.000 0.00 0.00 36.15 3.06
4045 7787 4.351054 GGACCCACCCACCAGCTG 62.351 72.222 6.78 6.78 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.130693 AGAGGCGTAAGAACTATGACCAC 59.869 47.826 0.00 0.00 43.02 4.16
38 39 1.375908 TGATGGTGGAGCTCGCAAC 60.376 57.895 7.83 10.28 0.00 4.17
39 40 1.375908 GTGATGGTGGAGCTCGCAA 60.376 57.895 7.83 0.00 0.00 4.85
56 57 2.452600 TTTGACAAGAAGGGCAAGGT 57.547 45.000 0.00 0.00 0.00 3.50
76 77 5.144100 TCCTCAAAGGGCAAGAATGTTTTA 58.856 37.500 0.00 0.00 35.59 1.52
82 83 3.425659 GAACTCCTCAAAGGGCAAGAAT 58.574 45.455 0.00 0.00 35.59 2.40
120 121 1.895798 AGAATGACAAGCTCGTCCTCA 59.104 47.619 1.52 0.00 34.88 3.86
127 128 4.164294 GTTCAATGCAGAATGACAAGCTC 58.836 43.478 0.00 0.00 39.69 4.09
150 151 6.913170 ACATTCATTGACCTGTTGTTCATAC 58.087 36.000 0.00 0.00 0.00 2.39
164 165 6.710278 TCACTGATCAAGGTACATTCATTGA 58.290 36.000 0.00 0.00 41.17 2.57
165 166 6.457934 GCTCACTGATCAAGGTACATTCATTG 60.458 42.308 0.00 0.00 0.00 2.82
166 167 5.587844 GCTCACTGATCAAGGTACATTCATT 59.412 40.000 0.00 0.00 0.00 2.57
167 168 5.121811 GCTCACTGATCAAGGTACATTCAT 58.878 41.667 0.00 0.00 0.00 2.57
168 169 4.020307 TGCTCACTGATCAAGGTACATTCA 60.020 41.667 0.00 0.00 0.00 2.57
169 170 4.507710 TGCTCACTGATCAAGGTACATTC 58.492 43.478 0.00 0.00 0.00 2.67
170 171 4.558226 TGCTCACTGATCAAGGTACATT 57.442 40.909 0.00 0.00 0.00 2.71
171 172 4.449131 CATGCTCACTGATCAAGGTACAT 58.551 43.478 0.00 0.00 0.00 2.29
173 174 2.611292 GCATGCTCACTGATCAAGGTAC 59.389 50.000 11.37 0.00 0.00 3.34
182 203 4.346127 AGGAATAGTATGCATGCTCACTGA 59.654 41.667 21.26 3.47 0.00 3.41
184 205 4.970860 AGGAATAGTATGCATGCTCACT 57.029 40.909 21.26 21.71 0.00 3.41
199 220 7.536625 AGGAATAAGAGTGCCTACTAGGAATA 58.463 38.462 6.26 0.00 37.67 1.75
216 237 6.926272 GTGCTTATGACCAGAGTAGGAATAAG 59.074 42.308 0.00 0.00 39.32 1.73
230 251 2.754552 TCCATGCTTTGTGCTTATGACC 59.245 45.455 0.00 0.00 43.37 4.02
238 259 1.005294 CGTGCTTCCATGCTTTGTGC 61.005 55.000 0.00 0.00 43.25 4.57
260 281 5.428783 CCCCTCTAATCGGGTTAATCCATAT 59.571 44.000 5.41 0.00 40.24 1.78
271 292 3.857157 TTTGATTCCCCTCTAATCGGG 57.143 47.619 0.00 0.00 41.59 5.14
283 304 3.987868 TCGATCCGATTCGATTTGATTCC 59.012 43.478 7.83 0.00 42.81 3.01
317 339 0.174389 ACGAAGCGCATCTGATCAGT 59.826 50.000 21.92 7.26 0.00 3.41
330 352 1.059264 CGATTTGAGACCGAACGAAGC 59.941 52.381 0.00 0.00 0.00 3.86
334 356 1.059264 GCTTCGATTTGAGACCGAACG 59.941 52.381 0.00 0.00 37.39 3.95
339 361 1.739466 TGCATGCTTCGATTTGAGACC 59.261 47.619 20.33 0.00 0.00 3.85
355 377 4.439153 CGATTTAGGCATCAGTTGTTGCAT 60.439 41.667 14.91 11.26 41.26 3.96
357 379 3.126858 TCGATTTAGGCATCAGTTGTTGC 59.873 43.478 6.62 6.62 39.38 4.17
360 382 3.375299 GCTTCGATTTAGGCATCAGTTGT 59.625 43.478 0.00 0.00 0.00 3.32
361 383 3.242870 GGCTTCGATTTAGGCATCAGTTG 60.243 47.826 4.41 0.00 38.03 3.16
388 442 4.387256 GTCGATCTAGGCATCAATTGTAGC 59.613 45.833 13.87 13.87 0.00 3.58
409 463 5.332355 GGCATCGATTGTAGTTGTATTCGTC 60.332 44.000 0.00 0.00 0.00 4.20
410 464 4.506654 GGCATCGATTGTAGTTGTATTCGT 59.493 41.667 0.00 0.00 0.00 3.85
414 468 8.311650 GATTTAGGCATCGATTGTAGTTGTAT 57.688 34.615 0.00 0.00 0.00 2.29
427 481 3.802139 TGTAAGCTTCGATTTAGGCATCG 59.198 43.478 0.00 0.00 46.24 3.84
445 499 7.371126 TGATTTGCATCGATTGTAGTTGTAA 57.629 32.000 0.00 0.00 31.08 2.41
458 512 4.082787 AGTTGTACCCTTTGATTTGCATCG 60.083 41.667 0.00 0.00 31.08 3.84
512 566 4.634703 ACACGTCCGGCAATGGCA 62.635 61.111 7.75 0.00 43.71 4.92
526 580 0.674534 ACGTCACCTCTCCTTCACAC 59.325 55.000 0.00 0.00 0.00 3.82
527 581 1.068588 CAACGTCACCTCTCCTTCACA 59.931 52.381 0.00 0.00 0.00 3.58
530 584 0.670854 GGCAACGTCACCTCTCCTTC 60.671 60.000 0.00 0.00 0.00 3.46
543 597 1.644786 GATCGGGACAAAGGGCAACG 61.645 60.000 0.00 0.00 37.60 4.10
545 599 0.404040 AAGATCGGGACAAAGGGCAA 59.596 50.000 0.00 0.00 0.00 4.52
546 600 0.322456 CAAGATCGGGACAAAGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
547 601 1.657751 GCAAGATCGGGACAAAGGGC 61.658 60.000 0.00 0.00 0.00 5.19
550 604 0.804989 GTGGCAAGATCGGGACAAAG 59.195 55.000 0.00 0.00 0.00 2.77
552 606 1.002624 GGTGGCAAGATCGGGACAA 60.003 57.895 0.00 0.00 0.00 3.18
553 607 2.668632 GGTGGCAAGATCGGGACA 59.331 61.111 0.00 0.00 0.00 4.02
558 621 1.493950 GAGCATCGGTGGCAAGATCG 61.494 60.000 0.00 0.00 0.00 3.69
579 642 1.442857 GACGACTGAGCACCGACAG 60.443 63.158 0.00 0.00 39.65 3.51
580 643 2.643272 GACGACTGAGCACCGACA 59.357 61.111 0.00 0.00 0.00 4.35
585 648 0.448197 TCTCATCGACGACTGAGCAC 59.552 55.000 22.06 0.00 38.99 4.40
591 654 1.809684 TCACACTCTCATCGACGACT 58.190 50.000 0.00 0.00 0.00 4.18
592 655 2.159824 TCTTCACACTCTCATCGACGAC 59.840 50.000 0.00 0.00 0.00 4.34
593 656 2.416893 CTCTTCACACTCTCATCGACGA 59.583 50.000 0.00 0.00 0.00 4.20
594 657 2.416893 TCTCTTCACACTCTCATCGACG 59.583 50.000 0.00 0.00 0.00 5.12
595 658 3.181501 CCTCTCTTCACACTCTCATCGAC 60.182 52.174 0.00 0.00 0.00 4.20
608 694 2.620367 GGCTCACTCTCTCCTCTCTTCA 60.620 54.545 0.00 0.00 0.00 3.02
609 695 2.024414 GGCTCACTCTCTCCTCTCTTC 58.976 57.143 0.00 0.00 0.00 2.87
629 715 2.825836 GCGCACCCTTCTCCCATG 60.826 66.667 0.30 0.00 0.00 3.66
633 719 3.682292 AATCCGCGCACCCTTCTCC 62.682 63.158 8.75 0.00 0.00 3.71
640 726 2.331451 GCCATAAATCCGCGCACC 59.669 61.111 8.75 0.00 0.00 5.01
646 732 2.443957 GAAGCGGCGCCATAAATCCG 62.444 60.000 30.40 10.87 44.29 4.18
663 749 0.459934 ACGTCGTGTTGTTTCCGGAA 60.460 50.000 14.35 14.35 0.00 4.30
667 753 0.857287 GGAGACGTCGTGTTGTTTCC 59.143 55.000 10.46 5.16 32.96 3.13
701 787 1.142965 TGGTGGATGCGGATGTACG 59.857 57.895 0.00 0.00 0.00 3.67
712 798 0.537143 ACAACGCATGTGTGGTGGAT 60.537 50.000 18.64 0.00 46.80 3.41
726 812 0.451628 CTGAGCGATGCAACACAACG 60.452 55.000 0.00 0.00 46.38 4.10
739 825 3.784701 TTTAAGAGCTAGGTCTGAGCG 57.215 47.619 24.47 0.00 44.98 5.03
761 847 0.951558 AACGCTTGAATCGGCAGTTT 59.048 45.000 0.00 0.00 0.00 2.66
764 850 1.978782 GAAAAACGCTTGAATCGGCAG 59.021 47.619 0.00 0.00 0.00 4.85
777 863 2.050691 CAACATGGCTTCCGAAAAACG 58.949 47.619 0.00 0.00 42.18 3.60
782 868 2.559698 TTCTCAACATGGCTTCCGAA 57.440 45.000 0.00 0.00 0.00 4.30
784 870 2.733227 GCATTTCTCAACATGGCTTCCG 60.733 50.000 0.00 0.00 0.00 4.30
785 871 2.494870 AGCATTTCTCAACATGGCTTCC 59.505 45.455 0.00 0.00 0.00 3.46
786 872 3.863142 AGCATTTCTCAACATGGCTTC 57.137 42.857 0.00 0.00 0.00 3.86
787 873 4.612264 AAAGCATTTCTCAACATGGCTT 57.388 36.364 0.00 0.00 27.08 4.35
796 882 7.014134 TCCATGTGAAACTTAAAGCATTTCTCA 59.986 33.333 0.00 0.00 39.07 3.27
797 883 7.370383 TCCATGTGAAACTTAAAGCATTTCTC 58.630 34.615 0.00 0.00 37.32 2.87
805 891 6.968131 TCTCGATCCATGTGAAACTTAAAG 57.032 37.500 0.00 0.00 38.04 1.85
821 907 5.751028 CCTGTTTGGACTTCTATTCTCGATC 59.249 44.000 0.00 0.00 38.35 3.69
822 908 5.665459 CCTGTTTGGACTTCTATTCTCGAT 58.335 41.667 0.00 0.00 38.35 3.59
823 909 4.620803 GCCTGTTTGGACTTCTATTCTCGA 60.621 45.833 0.00 0.00 38.35 4.04
824 910 3.619038 GCCTGTTTGGACTTCTATTCTCG 59.381 47.826 0.00 0.00 38.35 4.04
825 911 4.837972 AGCCTGTTTGGACTTCTATTCTC 58.162 43.478 0.00 0.00 38.35 2.87
826 912 4.917906 AGCCTGTTTGGACTTCTATTCT 57.082 40.909 0.00 0.00 38.35 2.40
827 913 7.988028 AGTTATAGCCTGTTTGGACTTCTATTC 59.012 37.037 0.00 0.00 38.35 1.75
828 914 7.862675 AGTTATAGCCTGTTTGGACTTCTATT 58.137 34.615 0.00 0.00 38.35 1.73
829 915 7.439108 AGTTATAGCCTGTTTGGACTTCTAT 57.561 36.000 0.00 0.00 38.35 1.98
830 916 6.869206 AGTTATAGCCTGTTTGGACTTCTA 57.131 37.500 0.00 0.00 38.35 2.10
831 917 5.763876 AGTTATAGCCTGTTTGGACTTCT 57.236 39.130 0.00 0.00 38.35 2.85
832 918 5.519206 CGTAGTTATAGCCTGTTTGGACTTC 59.481 44.000 0.00 0.00 38.35 3.01
833 919 5.416947 CGTAGTTATAGCCTGTTTGGACTT 58.583 41.667 0.00 0.00 38.35 3.01
834 920 4.142004 CCGTAGTTATAGCCTGTTTGGACT 60.142 45.833 0.00 0.00 38.35 3.85
835 921 4.117685 CCGTAGTTATAGCCTGTTTGGAC 58.882 47.826 0.00 0.00 38.35 4.02
836 922 3.133362 CCCGTAGTTATAGCCTGTTTGGA 59.867 47.826 0.00 0.00 38.35 3.53
837 923 3.118519 ACCCGTAGTTATAGCCTGTTTGG 60.119 47.826 0.00 0.00 39.35 3.28
838 924 4.117685 GACCCGTAGTTATAGCCTGTTTG 58.882 47.826 0.00 0.00 0.00 2.93
839 925 4.028825 AGACCCGTAGTTATAGCCTGTTT 58.971 43.478 0.00 0.00 0.00 2.83
840 926 3.639952 AGACCCGTAGTTATAGCCTGTT 58.360 45.455 0.00 0.00 0.00 3.16
841 927 3.309600 AGACCCGTAGTTATAGCCTGT 57.690 47.619 0.00 0.00 0.00 4.00
842 928 4.396522 ACTAGACCCGTAGTTATAGCCTG 58.603 47.826 0.00 0.00 28.15 4.85
843 929 4.720775 ACTAGACCCGTAGTTATAGCCT 57.279 45.455 0.00 0.00 28.15 4.58
844 930 4.823989 TCAACTAGACCCGTAGTTATAGCC 59.176 45.833 0.00 0.00 40.57 3.93
845 931 5.048852 CCTCAACTAGACCCGTAGTTATAGC 60.049 48.000 0.00 0.00 40.57 2.97
846 932 6.060788 ACCTCAACTAGACCCGTAGTTATAG 58.939 44.000 0.00 0.00 40.57 1.31
847 933 6.006275 ACCTCAACTAGACCCGTAGTTATA 57.994 41.667 0.00 0.00 40.57 0.98
848 934 4.864726 ACCTCAACTAGACCCGTAGTTAT 58.135 43.478 0.00 0.00 40.57 1.89
849 935 4.307032 ACCTCAACTAGACCCGTAGTTA 57.693 45.455 0.00 0.00 40.57 2.24
850 936 3.166560 ACCTCAACTAGACCCGTAGTT 57.833 47.619 0.00 0.00 42.80 2.24
851 937 2.895242 ACCTCAACTAGACCCGTAGT 57.105 50.000 0.00 0.00 34.56 2.73
852 938 5.106237 GCATATACCTCAACTAGACCCGTAG 60.106 48.000 0.00 0.00 0.00 3.51
853 939 4.763793 GCATATACCTCAACTAGACCCGTA 59.236 45.833 0.00 0.00 0.00 4.02
854 940 3.573110 GCATATACCTCAACTAGACCCGT 59.427 47.826 0.00 0.00 0.00 5.28
855 941 3.572682 TGCATATACCTCAACTAGACCCG 59.427 47.826 0.00 0.00 0.00 5.28
856 942 4.558898 CGTGCATATACCTCAACTAGACCC 60.559 50.000 0.00 0.00 0.00 4.46
857 943 4.547532 CGTGCATATACCTCAACTAGACC 58.452 47.826 0.00 0.00 0.00 3.85
858 944 3.982058 GCGTGCATATACCTCAACTAGAC 59.018 47.826 0.00 0.00 0.00 2.59
859 945 3.889538 AGCGTGCATATACCTCAACTAGA 59.110 43.478 0.00 0.00 0.00 2.43
860 946 4.244425 AGCGTGCATATACCTCAACTAG 57.756 45.455 0.00 0.00 0.00 2.57
861 947 4.022589 GGTAGCGTGCATATACCTCAACTA 60.023 45.833 14.44 0.00 36.76 2.24
862 948 3.243771 GGTAGCGTGCATATACCTCAACT 60.244 47.826 14.44 0.00 36.76 3.16
863 949 3.057734 GGTAGCGTGCATATACCTCAAC 58.942 50.000 14.44 0.00 36.76 3.18
864 950 2.696187 TGGTAGCGTGCATATACCTCAA 59.304 45.455 19.59 3.99 39.78 3.02
865 951 2.296190 CTGGTAGCGTGCATATACCTCA 59.704 50.000 19.59 5.96 39.78 3.86
866 952 2.927014 GCTGGTAGCGTGCATATACCTC 60.927 54.545 19.59 11.43 39.78 3.85
867 953 1.000955 GCTGGTAGCGTGCATATACCT 59.999 52.381 19.59 3.98 39.78 3.08
868 954 1.270094 TGCTGGTAGCGTGCATATACC 60.270 52.381 14.72 14.72 46.26 2.73
869 955 2.061773 CTGCTGGTAGCGTGCATATAC 58.938 52.381 11.76 0.00 46.26 1.47
870 956 1.960689 TCTGCTGGTAGCGTGCATATA 59.039 47.619 11.76 0.90 46.26 0.86
871 957 0.752658 TCTGCTGGTAGCGTGCATAT 59.247 50.000 11.76 0.00 46.26 1.78
886 972 0.673644 TTTAGCAAGGGAGCGTCTGC 60.674 55.000 0.00 0.00 40.15 4.26
887 973 1.808411 TTTTAGCAAGGGAGCGTCTG 58.192 50.000 0.00 0.00 40.15 3.51
891 977 3.363341 TTTGTTTTTAGCAAGGGAGCG 57.637 42.857 0.00 0.00 40.15 5.03
893 979 7.762159 TGTTTAGTTTTGTTTTTAGCAAGGGAG 59.238 33.333 0.00 0.00 0.00 4.30
929 4549 7.065803 TGAGAAAGATTATTTTTCCTACAGCGG 59.934 37.037 4.85 0.00 35.62 5.52
930 4550 7.974675 TGAGAAAGATTATTTTTCCTACAGCG 58.025 34.615 4.85 0.00 35.62 5.18
941 4561 7.020827 TGACAGTCCCTGAGAAAGATTATTT 57.979 36.000 0.00 0.00 35.18 1.40
969 4589 1.862602 GCCGGTGGAGCGTGATTTTT 61.863 55.000 1.90 0.00 0.00 1.94
1022 4652 2.434884 CCAACTCGCTGACGGCAT 60.435 61.111 7.13 0.00 41.91 4.40
1299 4929 4.791069 GGCCAGGTAGGACCCGGA 62.791 72.222 0.73 0.00 38.09 5.14
1617 5266 4.060192 ACTAGGGAGGGGTGTATTCTAGA 58.940 47.826 0.00 0.00 0.00 2.43
1650 5299 5.535333 ACAATTTTGACAAGGATTCAGCAG 58.465 37.500 0.00 0.00 0.00 4.24
1746 5408 4.218200 TCCAAGCATCATCGTTTGACAAAT 59.782 37.500 3.49 0.00 37.11 2.32
1832 5499 6.691818 CGAGAGTCACAACTAATACACCATAC 59.308 42.308 0.00 0.00 35.28 2.39
1890 5557 3.981416 GTCCGTTGATTTTCTTTGAAGCC 59.019 43.478 0.00 0.00 0.00 4.35
1994 5665 8.960591 TGATTCTTTCAGATATTTTCAAGGGAC 58.039 33.333 0.00 0.00 0.00 4.46
1999 5670 9.577110 GTGCATGATTCTTTCAGATATTTTCAA 57.423 29.630 0.00 0.00 37.89 2.69
2008 5679 4.568956 TCGAAGTGCATGATTCTTTCAGA 58.431 39.130 0.00 0.00 37.89 3.27
2030 5701 1.847737 TCCCAAACCACACCTTACACT 59.152 47.619 0.00 0.00 0.00 3.55
2043 5714 5.865085 TGCATACAGATACCTATCCCAAAC 58.135 41.667 0.00 0.00 33.17 2.93
2063 5743 6.114767 TCAAGATTAGCACATCATTACTGCA 58.885 36.000 0.00 0.00 33.06 4.41
2083 5763 9.807649 CCAAACCTCCTTCAAATATTTATCAAG 57.192 33.333 0.00 3.99 0.00 3.02
2106 5786 4.473444 GAGATTGGGCTTCCATATTCCAA 58.527 43.478 0.00 0.00 40.80 3.53
2109 5789 4.077822 CTGGAGATTGGGCTTCCATATTC 58.922 47.826 0.00 0.00 40.80 1.75
2110 5790 3.464833 ACTGGAGATTGGGCTTCCATATT 59.535 43.478 0.00 0.00 40.80 1.28
2111 5791 3.059097 ACTGGAGATTGGGCTTCCATAT 58.941 45.455 0.00 0.00 40.80 1.78
2115 5795 2.222227 AAACTGGAGATTGGGCTTCC 57.778 50.000 0.00 0.00 0.00 3.46
2127 5807 9.605275 CTATGATTCTGTTCAGATAAAACTGGA 57.395 33.333 3.28 0.00 38.31 3.86
2137 5817 9.249053 ACTCTAAACTCTATGATTCTGTTCAGA 57.751 33.333 0.00 0.00 0.00 3.27
2138 5818 9.299963 CACTCTAAACTCTATGATTCTGTTCAG 57.700 37.037 0.00 0.00 0.00 3.02
2139 5819 7.761704 GCACTCTAAACTCTATGATTCTGTTCA 59.238 37.037 0.00 0.00 0.00 3.18
2140 5820 7.761704 TGCACTCTAAACTCTATGATTCTGTTC 59.238 37.037 0.00 0.00 0.00 3.18
2141 5821 7.547370 GTGCACTCTAAACTCTATGATTCTGTT 59.453 37.037 10.32 0.00 0.00 3.16
2142 5822 7.038659 GTGCACTCTAAACTCTATGATTCTGT 58.961 38.462 10.32 0.00 0.00 3.41
2143 5823 7.009999 GTGTGCACTCTAAACTCTATGATTCTG 59.990 40.741 19.41 0.00 0.00 3.02
2144 5824 7.038659 GTGTGCACTCTAAACTCTATGATTCT 58.961 38.462 19.41 0.00 0.00 2.40
2145 5825 6.256757 GGTGTGCACTCTAAACTCTATGATTC 59.743 42.308 19.41 0.00 0.00 2.52
2159 5840 1.521450 GCATTGCTGGTGTGCACTCT 61.521 55.000 19.41 0.00 43.20 3.24
2185 5866 3.695830 TTCTAGCCACCCACAAAGTAG 57.304 47.619 0.00 0.00 0.00 2.57
2197 5878 6.832520 TGCAGAACAATAATTTTCTAGCCA 57.167 33.333 0.00 0.00 30.67 4.75
2210 5891 5.909621 ACAATGCTCTAATGCAGAACAAT 57.090 34.783 0.00 0.00 46.71 2.71
2215 5896 5.241285 TCAAACAACAATGCTCTAATGCAGA 59.759 36.000 0.00 0.00 46.71 4.26
2241 5922 9.520515 AGTCATTGGTATATGAAGTTCAGTTTT 57.479 29.630 11.91 0.00 36.37 2.43
2242 5923 8.950210 CAGTCATTGGTATATGAAGTTCAGTTT 58.050 33.333 11.91 0.00 36.37 2.66
2243 5924 7.554118 CCAGTCATTGGTATATGAAGTTCAGTT 59.446 37.037 11.91 3.82 42.41 3.16
2244 5925 7.050377 CCAGTCATTGGTATATGAAGTTCAGT 58.950 38.462 11.91 5.34 42.41 3.41
2245 5926 6.484643 CCCAGTCATTGGTATATGAAGTTCAG 59.515 42.308 11.91 0.00 46.25 3.02
2246 5927 6.157820 TCCCAGTCATTGGTATATGAAGTTCA 59.842 38.462 8.27 8.27 46.25 3.18
2253 5934 5.936372 CAGTGATCCCAGTCATTGGTATATG 59.064 44.000 0.00 0.00 46.25 1.78
2263 5944 4.984295 TGAATTTTCAGTGATCCCAGTCA 58.016 39.130 0.00 0.00 32.50 3.41
2270 5951 5.338365 GGCTCACATGAATTTTCAGTGATC 58.662 41.667 17.75 15.23 40.74 2.92
2276 5957 3.765381 TGAGGGCTCACATGAATTTTCA 58.235 40.909 0.00 0.00 36.77 2.69
2279 5960 3.972133 TGATGAGGGCTCACATGAATTT 58.028 40.909 0.00 0.00 43.11 1.82
2310 5991 4.797800 TGAGTAGCTCATAGATGATGCC 57.202 45.455 0.00 0.00 35.39 4.40
2320 6001 4.373156 ACCCAAAACTTGAGTAGCTCAT 57.627 40.909 0.00 0.00 40.39 2.90
2354 6035 1.265905 GAGTAGGCCAACAACAAACGG 59.734 52.381 5.01 0.00 0.00 4.44
2357 6038 2.738587 TGGAGTAGGCCAACAACAAA 57.261 45.000 5.01 0.00 34.31 2.83
2367 6048 3.694566 CCTAACAAACCAATGGAGTAGGC 59.305 47.826 6.16 0.00 0.00 3.93
2390 6074 9.434420 TCAAAAGGGATTTAACAATAAATGCAG 57.566 29.630 12.69 0.00 46.09 4.41
2401 6085 8.310406 CCTTCACAATTCAAAAGGGATTTAAC 57.690 34.615 0.00 0.00 35.63 2.01
2418 6102 4.599041 ACTTTATATGCAGCCCTTCACAA 58.401 39.130 0.00 0.00 0.00 3.33
2420 6104 4.884164 AGAACTTTATATGCAGCCCTTCAC 59.116 41.667 0.00 0.00 0.00 3.18
2421 6105 5.116084 AGAACTTTATATGCAGCCCTTCA 57.884 39.130 0.00 0.00 0.00 3.02
2422 6106 6.456795 AAAGAACTTTATATGCAGCCCTTC 57.543 37.500 0.00 0.00 0.00 3.46
2423 6107 6.857437 AAAAGAACTTTATATGCAGCCCTT 57.143 33.333 0.00 0.00 31.63 3.95
2424 6108 6.351286 CCAAAAAGAACTTTATATGCAGCCCT 60.351 38.462 0.00 0.00 31.63 5.19
2425 6109 5.812127 CCAAAAAGAACTTTATATGCAGCCC 59.188 40.000 0.00 0.00 31.63 5.19
2426 6110 5.291858 GCCAAAAAGAACTTTATATGCAGCC 59.708 40.000 0.00 0.00 31.63 4.85
2427 6111 6.101997 AGCCAAAAAGAACTTTATATGCAGC 58.898 36.000 0.00 0.00 31.63 5.25
2428 6112 6.470235 CGAGCCAAAAAGAACTTTATATGCAG 59.530 38.462 0.00 0.00 31.63 4.41
2442 6126 2.561373 GACCGCCGAGCCAAAAAG 59.439 61.111 0.00 0.00 0.00 2.27
2455 6139 0.672401 AACATAAGCACACCCGACCG 60.672 55.000 0.00 0.00 0.00 4.79
2460 6144 2.625790 TCACCAAAACATAAGCACACCC 59.374 45.455 0.00 0.00 0.00 4.61
2559 6269 3.181461 CCTCTAATTCCCACAGGCTACAG 60.181 52.174 0.00 0.00 0.00 2.74
2560 6270 2.771943 CCTCTAATTCCCACAGGCTACA 59.228 50.000 0.00 0.00 0.00 2.74
2561 6271 2.104963 CCCTCTAATTCCCACAGGCTAC 59.895 54.545 0.00 0.00 0.00 3.58
2562 6272 2.408565 CCCTCTAATTCCCACAGGCTA 58.591 52.381 0.00 0.00 0.00 3.93
2563 6273 1.216990 CCCTCTAATTCCCACAGGCT 58.783 55.000 0.00 0.00 0.00 4.58
2564 6274 0.466372 GCCCTCTAATTCCCACAGGC 60.466 60.000 0.00 0.00 0.00 4.85
2565 6275 1.133976 CAGCCCTCTAATTCCCACAGG 60.134 57.143 0.00 0.00 0.00 4.00
2570 6280 2.443255 TCCAATCAGCCCTCTAATTCCC 59.557 50.000 0.00 0.00 0.00 3.97
2575 6285 4.536765 GGATTTTCCAATCAGCCCTCTAA 58.463 43.478 0.00 0.00 40.77 2.10
2593 6303 8.047310 AGTTATGTGAAGATTACGAAAGGGATT 58.953 33.333 0.00 0.00 0.00 3.01
2594 6304 7.565680 AGTTATGTGAAGATTACGAAAGGGAT 58.434 34.615 0.00 0.00 0.00 3.85
2596 6306 7.611213 AAGTTATGTGAAGATTACGAAAGGG 57.389 36.000 0.00 0.00 0.00 3.95
2597 6307 8.936864 AGAAAGTTATGTGAAGATTACGAAAGG 58.063 33.333 0.00 0.00 0.00 3.11
2605 6315 9.793259 TGACCTAAAGAAAGTTATGTGAAGATT 57.207 29.630 0.00 0.00 0.00 2.40
2639 6349 7.262048 ACCCGCAATTAATAAACCAATGTAAG 58.738 34.615 0.00 0.00 0.00 2.34
2646 6356 6.777213 ACATAACCCGCAATTAATAAACCA 57.223 33.333 0.00 0.00 0.00 3.67
2656 6366 1.102978 GCAGGAACATAACCCGCAAT 58.897 50.000 0.00 0.00 0.00 3.56
2660 6370 0.808755 GTTGGCAGGAACATAACCCG 59.191 55.000 0.00 0.00 0.00 5.28
2670 6380 4.469657 AGTTAAAGTCAATGTTGGCAGGA 58.530 39.130 0.00 0.00 34.61 3.86
2672 6382 5.801947 GCATAGTTAAAGTCAATGTTGGCAG 59.198 40.000 0.00 0.00 34.61 4.85
2713 6423 9.653287 CTGTTGTCAAGAACTCACCTATAATAA 57.347 33.333 0.00 0.00 0.00 1.40
2714 6424 9.031537 TCTGTTGTCAAGAACTCACCTATAATA 57.968 33.333 0.00 0.00 0.00 0.98
2735 6445 0.836400 TCCTCCGGGCTTCTTCTGTT 60.836 55.000 0.00 0.00 0.00 3.16
2810 6520 2.625790 AGGAAGATGCTCTCGTATGACC 59.374 50.000 0.00 0.00 0.00 4.02
2825 6535 3.034635 GCATACTCTCCCAGAAGGAAGA 58.965 50.000 0.00 0.00 46.94 2.87
2861 6571 3.736433 CGTTTCCCACTTTTGTTGCATCA 60.736 43.478 0.00 0.00 0.00 3.07
3192 6902 9.919416 TGAAATGAAGGAATAATAACTCATCCA 57.081 29.630 0.00 0.00 32.47 3.41
3436 7146 0.381801 GTGCCCAACTGACAACACAG 59.618 55.000 0.00 0.00 42.78 3.66
3475 7185 5.230942 ACATAAACCAGAGAAGAGACAACG 58.769 41.667 0.00 0.00 0.00 4.10
3548 7268 4.942761 ATGCAAACCAAGAACACTGAAT 57.057 36.364 0.00 0.00 0.00 2.57
3560 7280 3.495806 CCCTTTAGCCAAAATGCAAACCA 60.496 43.478 0.00 0.00 0.00 3.67
3575 7295 6.173339 TCTAGTGAATGTTTCAGCCCTTTAG 58.827 40.000 0.00 0.00 41.01 1.85
3637 7357 9.589111 TGCACTTTCAGTAATACACGATATTTA 57.411 29.630 0.00 0.00 0.00 1.40
3641 7361 6.034150 CGTTGCACTTTCAGTAATACACGATA 59.966 38.462 0.00 0.00 0.00 2.92
3650 7370 5.090083 GTCAAAACGTTGCACTTTCAGTAA 58.910 37.500 0.00 0.00 34.50 2.24
3665 7387 7.406799 AAATATTTGCCTTTCAGTCAAAACG 57.593 32.000 0.00 0.00 34.00 3.60
3690 7413 8.408043 AAATTCAGTGATTTCATTGGACACTA 57.592 30.769 0.00 0.00 39.33 2.74
3717 7458 9.264719 GGTTTTCACTTTCAATGAGATTTCAAT 57.735 29.630 0.00 0.00 36.78 2.57
3718 7459 8.256605 TGGTTTTCACTTTCAATGAGATTTCAA 58.743 29.630 0.00 0.00 36.78 2.69
3719 7460 7.780064 TGGTTTTCACTTTCAATGAGATTTCA 58.220 30.769 0.00 0.00 37.81 2.69
3720 7461 8.822652 ATGGTTTTCACTTTCAATGAGATTTC 57.177 30.769 0.00 0.00 0.00 2.17
3721 7462 9.696917 GTATGGTTTTCACTTTCAATGAGATTT 57.303 29.630 0.00 0.00 0.00 2.17
3722 7463 8.859090 TGTATGGTTTTCACTTTCAATGAGATT 58.141 29.630 0.00 0.00 0.00 2.40
3723 7464 8.299570 GTGTATGGTTTTCACTTTCAATGAGAT 58.700 33.333 0.00 0.00 0.00 2.75
3724 7465 7.502226 AGTGTATGGTTTTCACTTTCAATGAGA 59.498 33.333 0.00 0.00 39.00 3.27
3729 7470 6.559810 CACAGTGTATGGTTTTCACTTTCAA 58.440 36.000 0.00 0.00 39.89 2.69
3735 7476 2.621055 TGGCACAGTGTATGGTTTTCAC 59.379 45.455 1.61 0.00 0.00 3.18
3791 7532 4.051922 CGGAGGGAGTATCAATTTTCTCG 58.948 47.826 0.00 0.00 36.25 4.04
3804 7545 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3805 7546 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3806 7547 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3807 7548 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3808 7549 4.377897 GTTCTTACATTATGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
3809 7550 4.049186 CGTTCTTACATTATGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
3810 7551 3.448301 ACGTTCTTACATTATGGGACGGA 59.552 43.478 5.92 0.00 0.00 4.69
3811 7552 3.788937 ACGTTCTTACATTATGGGACGG 58.211 45.455 5.92 0.00 0.00 4.79
3812 7553 5.107133 AGAACGTTCTTACATTATGGGACG 58.893 41.667 24.93 0.00 32.55 4.79
3813 7554 6.980051 AAGAACGTTCTTACATTATGGGAC 57.020 37.500 35.80 3.16 45.17 4.46
3824 7565 6.753279 CGTCCCATAATGTAAGAACGTTCTTA 59.247 38.462 35.56 35.56 45.17 2.10
3826 7567 5.107133 CGTCCCATAATGTAAGAACGTTCT 58.893 41.667 24.93 24.93 39.74 3.01
3827 7568 4.269363 CCGTCCCATAATGTAAGAACGTTC 59.731 45.833 20.71 20.71 36.28 3.95
3828 7569 4.081531 TCCGTCCCATAATGTAAGAACGTT 60.082 41.667 0.00 0.00 38.41 3.99
3829 7570 3.448301 TCCGTCCCATAATGTAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
3830 7571 4.049186 CTCCGTCCCATAATGTAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
3831 7572 4.377897 CCTCCGTCCCATAATGTAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
3832 7573 3.389983 CCCTCCGTCCCATAATGTAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
3833 7574 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3834 7575 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3835 7576 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3836 7577 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3837 7578 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3838 7579 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3839 7580 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3840 7581 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3841 7582 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3842 7583 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3843 7584 0.185416 GATCTACTCCCTCCGTCCCA 59.815 60.000 0.00 0.00 0.00 4.37
3844 7585 0.540133 GGATCTACTCCCTCCGTCCC 60.540 65.000 0.00 0.00 38.19 4.46
3845 7586 0.890090 CGGATCTACTCCCTCCGTCC 60.890 65.000 2.18 0.00 45.30 4.79
3846 7587 2.631427 CGGATCTACTCCCTCCGTC 58.369 63.158 2.18 0.00 45.30 4.79
3847 7588 4.903026 CGGATCTACTCCCTCCGT 57.097 61.111 2.18 0.00 45.30 4.69
3849 7590 1.700739 TCTCTCGGATCTACTCCCTCC 59.299 57.143 0.00 0.00 41.49 4.30
3850 7591 3.181448 ACTTCTCTCGGATCTACTCCCTC 60.181 52.174 0.00 0.00 41.49 4.30
3851 7592 2.781174 ACTTCTCTCGGATCTACTCCCT 59.219 50.000 0.00 0.00 41.49 4.20
3852 7593 3.217681 ACTTCTCTCGGATCTACTCCC 57.782 52.381 0.00 0.00 41.49 4.30
3853 7594 4.200874 TCAACTTCTCTCGGATCTACTCC 58.799 47.826 0.00 0.00 41.07 3.85
3854 7595 4.261031 GCTCAACTTCTCTCGGATCTACTC 60.261 50.000 0.00 0.00 0.00 2.59
3855 7596 3.630312 GCTCAACTTCTCTCGGATCTACT 59.370 47.826 0.00 0.00 0.00 2.57
3856 7597 3.630312 AGCTCAACTTCTCTCGGATCTAC 59.370 47.826 0.00 0.00 0.00 2.59
3857 7598 3.892284 AGCTCAACTTCTCTCGGATCTA 58.108 45.455 0.00 0.00 0.00 1.98
3858 7599 2.733956 AGCTCAACTTCTCTCGGATCT 58.266 47.619 0.00 0.00 0.00 2.75
3897 7638 0.871163 CTGTTTGCCTTGTTGCCGTG 60.871 55.000 0.00 0.00 0.00 4.94
3930 7672 1.269413 ACGGAAGACAACGGTAGTGTG 60.269 52.381 0.00 0.00 0.00 3.82
3931 7673 1.035139 ACGGAAGACAACGGTAGTGT 58.965 50.000 0.00 0.00 0.00 3.55
3932 7674 1.001048 TCACGGAAGACAACGGTAGTG 60.001 52.381 0.00 0.00 0.00 2.74
4045 7787 1.336517 GCGAGTTTTAAAAGGGGTGGC 60.337 52.381 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.