Multiple sequence alignment - TraesCS3D01G306300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G306300 chr3D 100.000 2489 0 0 1 2489 419906377 419908865 0.000000e+00 4597
1 TraesCS3D01G306300 chr3D 92.607 798 56 2 1691 2488 419928361 419929155 0.000000e+00 1144
2 TraesCS3D01G306300 chr3D 89.888 801 73 7 1691 2487 199367625 199366829 0.000000e+00 1024
3 TraesCS3D01G306300 chr3D 88.653 802 83 7 1692 2489 199388354 199387557 0.000000e+00 970
4 TraesCS3D01G306300 chr3A 93.843 877 34 8 798 1659 531079483 531078612 0.000000e+00 1303
5 TraesCS3D01G306300 chr3A 92.723 797 37 13 1 784 531080255 531079467 0.000000e+00 1131
6 TraesCS3D01G306300 chr3A 83.563 797 97 15 1694 2486 513604741 513603975 0.000000e+00 715
7 TraesCS3D01G306300 chr3B 93.010 887 40 10 798 1667 547126517 547127398 0.000000e+00 1275
8 TraesCS3D01G306300 chr3B 91.855 798 42 16 1 784 547125745 547126533 0.000000e+00 1092
9 TraesCS3D01G306300 chr3B 89.078 586 57 5 1693 2274 617370390 617370972 0.000000e+00 721
10 TraesCS3D01G306300 chr5D 89.152 802 72 9 1693 2489 198493166 198492375 0.000000e+00 985
11 TraesCS3D01G306300 chr5D 88.682 804 73 12 1691 2489 198480858 198480068 0.000000e+00 965
12 TraesCS3D01G306300 chr1A 87.905 802 86 10 1691 2489 424316162 424315369 0.000000e+00 933
13 TraesCS3D01G306300 chr1A 85.649 439 54 8 2054 2489 424324322 424323890 1.050000e-123 453
14 TraesCS3D01G306300 chr1A 90.560 339 31 1 2151 2488 296103761 296104099 4.880000e-122 448
15 TraesCS3D01G306300 chr4D 85.448 804 104 10 1693 2489 203713241 203714038 0.000000e+00 824
16 TraesCS3D01G306300 chr2B 85.067 817 97 18 1689 2489 543444934 543444127 0.000000e+00 809
17 TraesCS3D01G306300 chr7D 90.000 340 31 2 1686 2024 57071619 57071282 1.060000e-118 436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G306300 chr3D 419906377 419908865 2488 False 4597.0 4597 100.0000 1 2489 1 chr3D.!!$F1 2488
1 TraesCS3D01G306300 chr3D 419928361 419929155 794 False 1144.0 1144 92.6070 1691 2488 1 chr3D.!!$F2 797
2 TraesCS3D01G306300 chr3D 199366829 199367625 796 True 1024.0 1024 89.8880 1691 2487 1 chr3D.!!$R1 796
3 TraesCS3D01G306300 chr3D 199387557 199388354 797 True 970.0 970 88.6530 1692 2489 1 chr3D.!!$R2 797
4 TraesCS3D01G306300 chr3A 531078612 531080255 1643 True 1217.0 1303 93.2830 1 1659 2 chr3A.!!$R2 1658
5 TraesCS3D01G306300 chr3A 513603975 513604741 766 True 715.0 715 83.5630 1694 2486 1 chr3A.!!$R1 792
6 TraesCS3D01G306300 chr3B 547125745 547127398 1653 False 1183.5 1275 92.4325 1 1667 2 chr3B.!!$F2 1666
7 TraesCS3D01G306300 chr3B 617370390 617370972 582 False 721.0 721 89.0780 1693 2274 1 chr3B.!!$F1 581
8 TraesCS3D01G306300 chr5D 198492375 198493166 791 True 985.0 985 89.1520 1693 2489 1 chr5D.!!$R2 796
9 TraesCS3D01G306300 chr5D 198480068 198480858 790 True 965.0 965 88.6820 1691 2489 1 chr5D.!!$R1 798
10 TraesCS3D01G306300 chr1A 424315369 424316162 793 True 933.0 933 87.9050 1691 2489 1 chr1A.!!$R1 798
11 TraesCS3D01G306300 chr4D 203713241 203714038 797 False 824.0 824 85.4480 1693 2489 1 chr4D.!!$F1 796
12 TraesCS3D01G306300 chr2B 543444127 543444934 807 True 809.0 809 85.0670 1689 2489 1 chr2B.!!$R1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 692 0.036388 CACTGGGCGGCTAGAAAGAA 60.036 55.0 28.95 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1717 0.251253 TGCATGTTGGCCATCACAGA 60.251 50.0 18.7 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 4.008074 ACTGAATCAAACACGACCAGAT 57.992 40.909 0.00 0.00 0.00 2.90
200 211 4.879295 ACCATGGGTCTTGGAATTGATA 57.121 40.909 18.09 0.00 37.69 2.15
209 220 6.480981 GGGTCTTGGAATTGATAATTTGCATG 59.519 38.462 0.00 0.00 0.00 4.06
211 222 6.759827 GTCTTGGAATTGATAATTTGCATGCT 59.240 34.615 20.33 0.00 0.00 3.79
232 243 1.676006 GTATTTCGGTCAATGGCCTGG 59.324 52.381 3.32 0.00 0.00 4.45
581 600 1.995626 GGGTAGCAGCAGAAGGGGA 60.996 63.158 0.00 0.00 0.00 4.81
582 601 1.222113 GGTAGCAGCAGAAGGGGAC 59.778 63.158 0.00 0.00 0.00 4.46
667 689 0.248289 GTACACTGGGCGGCTAGAAA 59.752 55.000 28.95 10.34 0.00 2.52
668 690 0.535335 TACACTGGGCGGCTAGAAAG 59.465 55.000 28.95 18.58 0.00 2.62
669 691 1.192146 ACACTGGGCGGCTAGAAAGA 61.192 55.000 28.95 0.00 0.00 2.52
670 692 0.036388 CACTGGGCGGCTAGAAAGAA 60.036 55.000 28.95 0.00 0.00 2.52
671 693 0.250513 ACTGGGCGGCTAGAAAGAAG 59.749 55.000 28.95 1.30 0.00 2.85
673 695 1.139853 CTGGGCGGCTAGAAAGAAGAT 59.860 52.381 17.94 0.00 0.00 2.40
675 697 1.492720 GGCGGCTAGAAAGAAGATCG 58.507 55.000 0.00 0.00 0.00 3.69
677 699 1.124462 CGGCTAGAAAGAAGATCGCG 58.876 55.000 0.00 0.00 0.00 5.87
679 701 2.121009 GGCTAGAAAGAAGATCGCGAC 58.879 52.381 12.93 5.67 0.00 5.19
681 703 2.479730 GCTAGAAAGAAGATCGCGACCA 60.480 50.000 12.93 0.00 0.00 4.02
682 704 2.743636 AGAAAGAAGATCGCGACCAA 57.256 45.000 12.93 0.00 0.00 3.67
683 705 2.338500 AGAAAGAAGATCGCGACCAAC 58.662 47.619 12.93 3.80 0.00 3.77
684 706 1.393883 GAAAGAAGATCGCGACCAACC 59.606 52.381 12.93 0.00 0.00 3.77
685 707 0.391263 AAGAAGATCGCGACCAACCC 60.391 55.000 12.93 0.00 0.00 4.11
686 708 1.079405 GAAGATCGCGACCAACCCA 60.079 57.895 12.93 0.00 0.00 4.51
713 738 0.689745 AGCTACCTAATCGGCCCACA 60.690 55.000 0.00 0.00 35.61 4.17
766 793 1.587547 GATCCGCCATCCTTCTTCAC 58.412 55.000 0.00 0.00 0.00 3.18
767 794 0.911769 ATCCGCCATCCTTCTTCACA 59.088 50.000 0.00 0.00 0.00 3.58
768 795 0.690192 TCCGCCATCCTTCTTCACAA 59.310 50.000 0.00 0.00 0.00 3.33
769 796 1.073125 TCCGCCATCCTTCTTCACAAA 59.927 47.619 0.00 0.00 0.00 2.83
770 797 1.470098 CCGCCATCCTTCTTCACAAAG 59.530 52.381 0.00 0.00 0.00 2.77
771 798 2.426522 CGCCATCCTTCTTCACAAAGA 58.573 47.619 0.00 0.00 39.78 2.52
772 799 3.012518 CGCCATCCTTCTTCACAAAGAT 58.987 45.455 0.00 0.00 41.12 2.40
773 800 3.064545 CGCCATCCTTCTTCACAAAGATC 59.935 47.826 0.00 0.00 41.12 2.75
774 801 3.379688 GCCATCCTTCTTCACAAAGATCC 59.620 47.826 0.00 0.00 41.12 3.36
775 802 3.950395 CCATCCTTCTTCACAAAGATCCC 59.050 47.826 0.00 0.00 41.12 3.85
776 803 3.334583 TCCTTCTTCACAAAGATCCCG 57.665 47.619 0.00 0.00 41.12 5.14
777 804 2.637872 TCCTTCTTCACAAAGATCCCGT 59.362 45.455 0.00 0.00 41.12 5.28
778 805 2.744202 CCTTCTTCACAAAGATCCCGTG 59.256 50.000 0.00 0.00 41.12 4.94
779 806 2.472695 TCTTCACAAAGATCCCGTGG 57.527 50.000 6.85 0.00 36.59 4.94
780 807 1.003118 TCTTCACAAAGATCCCGTGGG 59.997 52.381 0.00 0.00 36.59 4.61
781 808 0.608035 TTCACAAAGATCCCGTGGGC 60.608 55.000 0.00 0.00 34.68 5.36
782 809 2.046285 CACAAAGATCCCGTGGGCC 61.046 63.158 0.00 0.00 34.68 5.80
783 810 2.824041 CAAAGATCCCGTGGGCCG 60.824 66.667 0.00 0.00 34.68 6.13
784 811 3.006728 AAAGATCCCGTGGGCCGA 61.007 61.111 0.00 0.00 39.56 5.54
785 812 3.325201 AAAGATCCCGTGGGCCGAC 62.325 63.158 8.02 8.02 39.56 4.79
796 823 2.754375 GGCCGACCCCTCAAGAAA 59.246 61.111 0.00 0.00 0.00 2.52
840 867 2.531206 GTTACGATCTGACTGACAGCC 58.469 52.381 1.25 0.00 45.38 4.85
874 901 0.321298 TGTACTTCCTTTCGCTGCCC 60.321 55.000 0.00 0.00 0.00 5.36
875 902 0.321298 GTACTTCCTTTCGCTGCCCA 60.321 55.000 0.00 0.00 0.00 5.36
968 995 1.132640 GACGCAGATGCAACGAACC 59.867 57.895 5.55 0.00 42.21 3.62
1022 1061 4.864334 CATGGGAGGAGGGCACGC 62.864 72.222 0.00 0.00 0.00 5.34
1404 1443 4.636435 CACGCGGTGGGGTTCCTT 62.636 66.667 12.47 0.00 37.19 3.36
1502 1541 2.362717 GCTGCTAGGTCTTCTTATCCGT 59.637 50.000 0.00 0.00 0.00 4.69
1520 1562 2.430332 CCGTATGCATGGGTTTGGAAAT 59.570 45.455 10.16 0.00 0.00 2.17
1556 1598 2.689983 CCTGTTAATCTGGGTGATTGCC 59.310 50.000 0.00 0.00 44.40 4.52
1589 1631 4.008330 TCACAACCGTTCTTGTTTGGTTA 58.992 39.130 0.00 0.00 42.60 2.85
1597 1639 5.008217 CCGTTCTTGTTTGGTTACATCTTGA 59.992 40.000 0.00 0.00 0.00 3.02
1612 1654 3.936372 TCTTGAATATCGACCGGGATC 57.064 47.619 6.32 0.00 0.00 3.36
1654 1701 6.500684 TTGAGATGCTGGATTTAGTTGTTC 57.499 37.500 0.00 0.00 0.00 3.18
1659 1706 4.633175 TGCTGGATTTAGTTGTTCGTGTA 58.367 39.130 0.00 0.00 0.00 2.90
1667 1714 7.061557 GGATTTAGTTGTTCGTGTAGTACTGTC 59.938 40.741 5.39 0.00 0.00 3.51
1668 1715 6.624352 TTAGTTGTTCGTGTAGTACTGTCT 57.376 37.500 5.39 0.00 0.00 3.41
1669 1716 7.728847 TTAGTTGTTCGTGTAGTACTGTCTA 57.271 36.000 5.39 0.00 0.00 2.59
1670 1717 6.814506 AGTTGTTCGTGTAGTACTGTCTAT 57.185 37.500 5.39 0.00 0.00 1.98
1671 1718 6.840075 AGTTGTTCGTGTAGTACTGTCTATC 58.160 40.000 5.39 0.00 0.00 2.08
1672 1719 6.654161 AGTTGTTCGTGTAGTACTGTCTATCT 59.346 38.462 5.39 0.00 0.00 1.98
1673 1720 6.418585 TGTTCGTGTAGTACTGTCTATCTG 57.581 41.667 5.39 0.00 0.00 2.90
1674 1721 5.936372 TGTTCGTGTAGTACTGTCTATCTGT 59.064 40.000 5.39 0.00 0.00 3.41
1675 1722 6.128363 TGTTCGTGTAGTACTGTCTATCTGTG 60.128 42.308 5.39 0.00 0.00 3.66
1676 1723 5.727434 TCGTGTAGTACTGTCTATCTGTGA 58.273 41.667 5.39 0.00 0.00 3.58
1677 1724 6.346896 TCGTGTAGTACTGTCTATCTGTGAT 58.653 40.000 5.39 0.00 0.00 3.06
1678 1725 6.258068 TCGTGTAGTACTGTCTATCTGTGATG 59.742 42.308 5.39 0.00 0.00 3.07
1679 1726 6.511929 CGTGTAGTACTGTCTATCTGTGATGG 60.512 46.154 5.39 0.00 0.00 3.51
1680 1727 4.927978 AGTACTGTCTATCTGTGATGGC 57.072 45.455 0.00 0.00 0.00 4.40
1681 1728 3.639094 AGTACTGTCTATCTGTGATGGCC 59.361 47.826 0.00 0.00 0.00 5.36
1682 1729 2.470990 ACTGTCTATCTGTGATGGCCA 58.529 47.619 8.56 8.56 0.00 5.36
1683 1730 2.840038 ACTGTCTATCTGTGATGGCCAA 59.160 45.455 10.96 0.00 0.00 4.52
1684 1731 3.201290 CTGTCTATCTGTGATGGCCAAC 58.799 50.000 10.96 8.17 0.00 3.77
1685 1732 2.571202 TGTCTATCTGTGATGGCCAACA 59.429 45.455 10.96 11.74 0.00 3.33
1686 1733 3.200605 TGTCTATCTGTGATGGCCAACAT 59.799 43.478 19.64 5.50 44.18 2.71
1687 1734 3.562973 GTCTATCTGTGATGGCCAACATG 59.437 47.826 19.64 14.63 40.72 3.21
1688 1735 1.108776 ATCTGTGATGGCCAACATGC 58.891 50.000 19.64 7.81 40.72 4.06
1689 1736 0.251253 TCTGTGATGGCCAACATGCA 60.251 50.000 19.64 12.13 40.72 3.96
1696 1743 0.757512 TGGCCAACATGCATGTGTTT 59.242 45.000 31.98 14.84 40.17 2.83
1710 1757 1.471964 GTGTTTGCACGCGAAATTGA 58.528 45.000 15.93 0.00 35.75 2.57
1733 1780 2.094752 GCGCAACACCAGGATATTTGTT 60.095 45.455 0.30 0.00 32.34 2.83
1821 1868 0.890996 AGAACCAGCCGCTTTTCAGG 60.891 55.000 12.18 3.74 0.00 3.86
1866 1914 2.985539 CTAGGGCTGCTAGGGCTCGA 62.986 65.000 0.00 0.00 39.59 4.04
1880 1928 2.416972 GGGCTCGACAAGAAGTAACGAT 60.417 50.000 0.00 0.00 32.81 3.73
1881 1929 2.599082 GGCTCGACAAGAAGTAACGATG 59.401 50.000 0.00 0.00 32.81 3.84
1989 2042 4.201951 CGCTGGACTTGGCGTATT 57.798 55.556 0.00 0.00 45.34 1.89
2007 2060 8.038944 TGGCGTATTAGATTAAAACTCTGAAGT 58.961 33.333 0.00 0.00 37.32 3.01
2015 2068 7.941919 AGATTAAAACTCTGAAGTCAAAACCC 58.058 34.615 0.00 0.00 33.48 4.11
2097 2156 0.541863 CGTACAAATCCTCCTGGGCT 59.458 55.000 0.00 0.00 34.39 5.19
2113 2172 4.399303 CCTGGGCTTACAAGGAAAATAGTG 59.601 45.833 0.00 0.00 0.00 2.74
2226 2294 5.704053 AGGAAATAATAAAATACTCCGGCCG 59.296 40.000 21.04 21.04 0.00 6.13
2252 2321 6.128822 CGTCGCTATCATATGCAACAGTAATT 60.129 38.462 0.00 0.00 0.00 1.40
2255 2324 9.435688 TCGCTATCATATGCAACAGTAATTAAT 57.564 29.630 0.00 0.00 0.00 1.40
2457 2526 8.711457 GGATCAATGATAAAATTAATTTGGCCG 58.289 33.333 14.04 1.03 32.27 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 4.390603 GTGAATACGATACCACAAGCACAA 59.609 41.667 0.00 0.00 0.00 3.33
200 211 4.082300 TGACCGAAATACAGCATGCAAATT 60.082 37.500 21.98 12.91 42.53 1.82
209 220 1.065551 GGCCATTGACCGAAATACAGC 59.934 52.381 0.00 0.00 0.00 4.40
211 222 2.364632 CAGGCCATTGACCGAAATACA 58.635 47.619 5.01 0.00 0.00 2.29
232 243 2.815647 GGCGGTAGCTGTGCTCAC 60.816 66.667 0.00 0.00 44.37 3.51
556 575 3.256178 TGCTGCTACCCTTGCCCA 61.256 61.111 0.00 0.00 0.00 5.36
560 579 0.393537 CCCTTCTGCTGCTACCCTTG 60.394 60.000 0.00 0.00 0.00 3.61
561 580 1.566298 CCCCTTCTGCTGCTACCCTT 61.566 60.000 0.00 0.00 0.00 3.95
667 689 1.218316 GGGTTGGTCGCGATCTTCT 59.782 57.895 21.76 0.00 0.00 2.85
668 690 1.079405 TGGGTTGGTCGCGATCTTC 60.079 57.895 21.76 12.86 0.00 2.87
669 691 1.375523 GTGGGTTGGTCGCGATCTT 60.376 57.895 21.76 0.00 0.00 2.40
670 692 2.264794 GTGGGTTGGTCGCGATCT 59.735 61.111 21.76 0.00 0.00 2.75
671 693 2.818274 GGTGGGTTGGTCGCGATC 60.818 66.667 14.06 13.88 0.00 3.69
675 697 2.671963 GAAGGGTGGGTTGGTCGC 60.672 66.667 0.00 0.00 0.00 5.19
677 699 1.179174 GCTTGAAGGGTGGGTTGGTC 61.179 60.000 0.00 0.00 0.00 4.02
679 701 0.404040 TAGCTTGAAGGGTGGGTTGG 59.596 55.000 0.00 0.00 0.00 3.77
681 703 0.404426 GGTAGCTTGAAGGGTGGGTT 59.596 55.000 0.00 0.00 0.00 4.11
682 704 0.475828 AGGTAGCTTGAAGGGTGGGT 60.476 55.000 0.00 0.00 0.00 4.51
683 705 1.580059 TAGGTAGCTTGAAGGGTGGG 58.420 55.000 0.00 0.00 0.00 4.61
684 706 3.741388 CGATTAGGTAGCTTGAAGGGTGG 60.741 52.174 0.00 0.00 0.00 4.61
685 707 3.458189 CGATTAGGTAGCTTGAAGGGTG 58.542 50.000 0.00 0.00 0.00 4.61
686 708 2.434702 CCGATTAGGTAGCTTGAAGGGT 59.565 50.000 0.00 0.00 34.51 4.34
713 738 2.373169 TCTGTGGACAGGCTTTCAGATT 59.627 45.455 6.94 0.00 43.91 2.40
760 787 1.003118 CCCACGGGATCTTTGTGAAGA 59.997 52.381 12.15 0.00 45.45 2.87
761 788 1.453155 CCCACGGGATCTTTGTGAAG 58.547 55.000 12.15 2.72 35.66 3.02
762 789 0.608035 GCCCACGGGATCTTTGTGAA 60.608 55.000 6.21 0.00 35.66 3.18
763 790 1.002624 GCCCACGGGATCTTTGTGA 60.003 57.895 6.21 0.00 35.66 3.58
764 791 2.046285 GGCCCACGGGATCTTTGTG 61.046 63.158 6.21 0.00 37.50 3.33
765 792 2.355115 GGCCCACGGGATCTTTGT 59.645 61.111 6.21 0.00 37.50 2.83
766 793 2.824041 CGGCCCACGGGATCTTTG 60.824 66.667 6.21 0.00 39.42 2.77
767 794 3.006728 TCGGCCCACGGGATCTTT 61.007 61.111 6.21 0.00 44.45 2.52
768 795 3.782443 GTCGGCCCACGGGATCTT 61.782 66.667 6.21 0.00 44.45 2.40
779 806 0.538746 TTTTTCTTGAGGGGTCGGCC 60.539 55.000 0.00 0.00 0.00 6.13
780 807 3.030415 TTTTTCTTGAGGGGTCGGC 57.970 52.632 0.00 0.00 0.00 5.54
795 822 1.677633 CGGCCCACGGGATCTTTTT 60.678 57.895 6.21 0.00 39.42 1.94
796 823 2.045340 CGGCCCACGGGATCTTTT 60.045 61.111 6.21 0.00 39.42 2.27
840 867 3.604494 TACACAGTCGTCAGCCGCG 62.604 63.158 0.00 0.00 36.19 6.46
916 943 4.673298 TATATGTGCGGGGCGGCG 62.673 66.667 0.51 0.51 35.06 6.46
917 944 3.047877 GTATATGTGCGGGGCGGC 61.048 66.667 0.00 0.00 0.00 6.53
921 948 0.534203 GTGGGTGTATATGTGCGGGG 60.534 60.000 0.00 0.00 0.00 5.73
968 995 0.604780 GCCGATGATGATCTGGTGGG 60.605 60.000 0.00 0.00 0.00 4.61
1502 1541 5.222007 ACCAAAATTTCCAAACCCATGCATA 60.222 36.000 0.00 0.00 0.00 3.14
1520 1562 2.746279 ACAGGATCACACCACCAAAA 57.254 45.000 0.00 0.00 0.00 2.44
1556 1598 5.171476 AGAACGGTTGTGAATAGTGAGATG 58.829 41.667 0.00 0.00 0.00 2.90
1589 1631 2.963101 TCCCGGTCGATATTCAAGATGT 59.037 45.455 0.00 0.00 0.00 3.06
1597 1639 4.417426 AAAGTTGATCCCGGTCGATATT 57.583 40.909 0.00 0.00 0.00 1.28
1654 1701 6.423042 CATCACAGATAGACAGTACTACACG 58.577 44.000 0.00 0.00 0.00 4.49
1659 1706 3.639094 GGCCATCACAGATAGACAGTACT 59.361 47.826 0.00 0.00 0.00 2.73
1667 1714 2.292569 GCATGTTGGCCATCACAGATAG 59.707 50.000 18.70 7.92 0.00 2.08
1668 1715 2.300433 GCATGTTGGCCATCACAGATA 58.700 47.619 18.70 0.00 0.00 1.98
1669 1716 1.108776 GCATGTTGGCCATCACAGAT 58.891 50.000 18.70 0.00 0.00 2.90
1670 1717 0.251253 TGCATGTTGGCCATCACAGA 60.251 50.000 18.70 0.00 0.00 3.41
1671 1718 0.821517 ATGCATGTTGGCCATCACAG 59.178 50.000 18.70 14.72 0.00 3.66
1672 1719 0.533032 CATGCATGTTGGCCATCACA 59.467 50.000 18.70 15.60 0.00 3.58
1673 1720 0.533491 ACATGCATGTTGGCCATCAC 59.467 50.000 26.61 9.74 37.90 3.06
1674 1721 0.533032 CACATGCATGTTGGCCATCA 59.467 50.000 29.48 18.62 39.39 3.07
1675 1722 0.533491 ACACATGCATGTTGGCCATC 59.467 50.000 29.48 6.55 39.39 3.51
1676 1723 0.978151 AACACATGCATGTTGGCCAT 59.022 45.000 29.48 9.43 41.29 4.40
1677 1724 0.757512 AAACACATGCATGTTGGCCA 59.242 45.000 29.48 0.00 42.01 5.36
1678 1725 1.149987 CAAACACATGCATGTTGGCC 58.850 50.000 29.48 0.00 42.01 5.36
1696 1743 2.127421 GCGTCAATTTCGCGTGCA 60.127 55.556 5.77 0.00 43.94 4.57
1710 1757 0.392461 AATATCCTGGTGTTGCGCGT 60.392 50.000 8.43 0.00 0.00 6.01
1821 1868 1.418373 GTGATCTTTGCCGTTTTGCC 58.582 50.000 0.00 0.00 0.00 4.52
1866 1914 8.883731 CATCTATTTTCCATCGTTACTTCTTGT 58.116 33.333 0.00 0.00 0.00 3.16
1880 1928 9.878667 TCTATTTTCACGTACATCTATTTTCCA 57.121 29.630 0.00 0.00 0.00 3.53
1965 2018 3.414700 CAAGTCCAGCGTGCCGTC 61.415 66.667 0.00 0.00 0.00 4.79
1989 2042 9.063615 GGGTTTTGACTTCAGAGTTTTAATCTA 57.936 33.333 0.00 0.00 35.88 1.98
2007 2060 2.554344 GGCATGTCCTAGTGGGTTTTGA 60.554 50.000 0.00 0.00 36.25 2.69
2015 2068 3.393800 CGAAATAGGGCATGTCCTAGTG 58.606 50.000 28.94 13.62 42.11 2.74
2226 2294 1.792367 TGTTGCATATGATAGCGACGC 59.208 47.619 13.03 13.03 45.90 5.19
2266 2335 9.905713 TTTGCATGGACTAGATTAAGAAGTATT 57.094 29.630 0.00 0.00 0.00 1.89
2276 2345 4.574674 TGGAGTTTGCATGGACTAGATT 57.425 40.909 0.00 0.00 0.00 2.40
2361 2430 2.686915 GCTGACCAGATTTCAGGAATGG 59.313 50.000 0.47 0.00 40.84 3.16
2365 2434 1.661463 AGGCTGACCAGATTTCAGGA 58.339 50.000 0.47 0.00 40.84 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.