Multiple sequence alignment - TraesCS3D01G306200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G306200 chr3D 100.000 4547 0 0 1 4547 419907986 419903440 0.000000e+00 8397.0
1 TraesCS3D01G306200 chr3A 93.414 2323 114 23 827 3134 531079467 531081765 0.000000e+00 3406.0
2 TraesCS3D01G306200 chr3A 96.736 919 19 6 3215 4126 531081763 531082677 0.000000e+00 1520.0
3 TraesCS3D01G306200 chr3A 93.961 828 30 8 1 813 531078661 531079483 0.000000e+00 1234.0
4 TraesCS3D01G306200 chr3B 89.508 1220 97 22 827 2026 547126533 547125325 0.000000e+00 1515.0
5 TraesCS3D01G306200 chr3B 92.998 914 43 14 3215 4126 547124071 547123177 0.000000e+00 1314.0
6 TraesCS3D01G306200 chr3B 93.576 825 36 9 1 813 547127336 547126517 0.000000e+00 1214.0
7 TraesCS3D01G306200 chr3B 95.718 724 31 0 2091 2814 547125223 547124500 0.000000e+00 1166.0
8 TraesCS3D01G306200 chr3B 92.982 171 12 0 2844 3014 547124329 547124159 2.720000e-62 250.0
9 TraesCS3D01G306200 chr3B 93.333 45 2 1 2025 2069 547125266 547125223 1.060000e-06 65.8
10 TraesCS3D01G306200 chr7A 95.070 426 17 1 4126 4547 524966839 524966414 0.000000e+00 667.0
11 TraesCS3D01G306200 chr7A 93.836 438 10 2 4127 4547 525469127 525468690 1.070000e-180 643.0
12 TraesCS3D01G306200 chr7A 93.578 109 4 3 3128 3234 689269282 689269389 4.710000e-35 159.0
13 TraesCS3D01G306200 chr4B 90.389 437 25 10 4126 4547 414427356 414426922 3.970000e-155 558.0
14 TraesCS3D01G306200 chr4B 86.869 99 13 0 4126 4224 56122645 56122743 1.340000e-20 111.0
15 TraesCS3D01G306200 chr6A 98.925 93 1 0 3128 3220 542602877 542602785 2.810000e-37 167.0
16 TraesCS3D01G306200 chr6B 93.694 111 6 1 3117 3226 711374651 711374761 1.010000e-36 165.0
17 TraesCS3D01G306200 chr6B 95.098 102 3 2 3132 3231 716607871 716607770 4.710000e-35 159.0
18 TraesCS3D01G306200 chr5A 97.917 96 0 1 3122 3217 680978069 680978162 1.010000e-36 165.0
19 TraesCS3D01G306200 chr7B 98.889 90 1 0 3128 3217 483787734 483787823 1.310000e-35 161.0
20 TraesCS3D01G306200 chr6D 93.396 106 5 2 3130 3233 271233439 271233544 6.090000e-34 156.0
21 TraesCS3D01G306200 chr4A 93.396 106 5 2 3113 3217 603488775 603488879 6.090000e-34 156.0
22 TraesCS3D01G306200 chr1D 92.593 108 4 3 3110 3217 197821549 197821652 7.880000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G306200 chr3D 419903440 419907986 4546 True 8397.000000 8397 100.000000 1 4547 1 chr3D.!!$R1 4546
1 TraesCS3D01G306200 chr3A 531078661 531082677 4016 False 2053.333333 3406 94.703667 1 4126 3 chr3A.!!$F1 4125
2 TraesCS3D01G306200 chr3B 547123177 547127336 4159 True 920.800000 1515 93.019167 1 4126 6 chr3B.!!$R1 4125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 951 0.404040 TAGCTTGAAGGGTGGGTTGG 59.596 55.000 0.00 0.00 0.00 3.77 F
1049 1070 0.393537 CCCTTCTGCTGCTACCCTTG 60.394 60.000 0.00 0.00 0.00 3.61 F
1400 1429 1.065551 GGCCATTGACCGAAATACAGC 59.934 52.381 0.00 0.00 0.00 4.40 F
1636 1676 1.278127 GAATCTTTGGACTGTCCCGGA 59.722 52.381 23.42 17.53 35.03 5.14 F
2919 3167 2.784347 GCTAAAGCTCCCAACAGTCTT 58.216 47.619 0.00 0.00 38.21 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 2639 2.479566 TTCCAACTGCATCCAGAGAC 57.520 50.000 0.0 0.0 41.77 3.36 R
3005 3253 1.851666 CAACCACACAACAAATGCGAC 59.148 47.619 0.0 0.0 0.00 5.19 R
3205 3459 5.411103 AGGATGATAACTACTCCCTCTGT 57.589 43.478 0.0 0.0 0.00 3.41 R
3206 3460 6.739331 AAAGGATGATAACTACTCCCTCTG 57.261 41.667 0.0 0.0 0.00 3.35 R
4396 4656 0.034477 ACGGATTTCGCTGGGGATTT 60.034 50.000 0.0 0.0 43.89 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.386768 CCCGGTCGATATTCAAGATGT 57.613 47.619 0.00 0.00 0.00 3.06
53 54 5.171476 AGAACGGTTGTGAATAGTGAGATG 58.829 41.667 0.00 0.00 0.00 2.90
89 90 2.746279 ACAGGATCACACCACCAAAA 57.254 45.000 0.00 0.00 0.00 2.44
107 108 5.222007 ACCAAAATTTCCAAACCCATGCATA 60.222 36.000 0.00 0.00 0.00 3.14
641 648 0.604780 GCCGATGATGATCTGGTGGG 60.605 60.000 0.00 0.00 0.00 4.61
688 704 0.534203 GTGGGTGTATATGTGCGGGG 60.534 60.000 0.00 0.00 0.00 5.73
689 705 1.599797 GGGTGTATATGTGCGGGGC 60.600 63.158 0.00 0.00 0.00 5.80
693 709 4.673298 TATATGTGCGGGGCGGCG 62.673 66.667 0.51 0.51 35.06 6.46
769 785 3.604494 TACACAGTCGTCAGCCGCG 62.604 63.158 0.00 0.00 36.19 6.46
813 829 2.045340 CGGCCCACGGGATCTTTT 60.045 61.111 6.21 0.00 39.42 2.27
829 845 3.030415 TTTTTCTTGAGGGGTCGGC 57.970 52.632 0.00 0.00 0.00 5.54
830 846 0.538746 TTTTTCTTGAGGGGTCGGCC 60.539 55.000 0.00 0.00 0.00 6.13
841 857 3.782443 GTCGGCCCACGGGATCTT 61.782 66.667 6.21 0.00 44.45 2.40
842 858 3.006728 TCGGCCCACGGGATCTTT 61.007 61.111 6.21 0.00 44.45 2.52
843 859 2.824041 CGGCCCACGGGATCTTTG 60.824 66.667 6.21 0.00 39.42 2.77
844 860 2.355115 GGCCCACGGGATCTTTGT 59.645 61.111 6.21 0.00 37.50 2.83
845 861 2.046285 GGCCCACGGGATCTTTGTG 61.046 63.158 6.21 0.00 37.50 3.33
846 862 1.002624 GCCCACGGGATCTTTGTGA 60.003 57.895 6.21 0.00 35.66 3.58
847 863 0.608035 GCCCACGGGATCTTTGTGAA 60.608 55.000 6.21 0.00 35.66 3.18
848 864 1.453155 CCCACGGGATCTTTGTGAAG 58.547 55.000 12.15 2.72 35.66 3.02
849 865 1.003118 CCCACGGGATCTTTGTGAAGA 59.997 52.381 12.15 0.00 45.45 2.87
896 914 2.373169 TCTGTGGACAGGCTTTCAGATT 59.627 45.455 6.94 0.00 43.91 2.40
923 944 2.434702 CCGATTAGGTAGCTTGAAGGGT 59.565 50.000 0.00 0.00 34.51 4.34
924 945 3.458189 CGATTAGGTAGCTTGAAGGGTG 58.542 50.000 0.00 0.00 0.00 4.61
925 946 3.741388 CGATTAGGTAGCTTGAAGGGTGG 60.741 52.174 0.00 0.00 0.00 4.61
927 948 0.475828 AGGTAGCTTGAAGGGTGGGT 60.476 55.000 0.00 0.00 0.00 4.51
930 951 0.404040 TAGCTTGAAGGGTGGGTTGG 59.596 55.000 0.00 0.00 0.00 3.77
932 953 1.179174 GCTTGAAGGGTGGGTTGGTC 61.179 60.000 0.00 0.00 0.00 4.02
933 954 0.889186 CTTGAAGGGTGGGTTGGTCG 60.889 60.000 0.00 0.00 0.00 4.79
935 956 4.636435 AAGGGTGGGTTGGTCGCG 62.636 66.667 0.00 0.00 0.00 5.87
938 959 2.818274 GGTGGGTTGGTCGCGATC 60.818 66.667 14.06 13.88 0.00 3.69
939 960 2.264794 GTGGGTTGGTCGCGATCT 59.735 61.111 21.76 0.00 0.00 2.75
940 961 1.375523 GTGGGTTGGTCGCGATCTT 60.376 57.895 21.76 0.00 0.00 2.40
941 962 1.079405 TGGGTTGGTCGCGATCTTC 60.079 57.895 21.76 12.86 0.00 2.87
942 963 1.218316 GGGTTGGTCGCGATCTTCT 59.782 57.895 21.76 0.00 0.00 2.85
1048 1069 1.566298 CCCCTTCTGCTGCTACCCTT 61.566 60.000 0.00 0.00 0.00 3.95
1049 1070 0.393537 CCCTTCTGCTGCTACCCTTG 60.394 60.000 0.00 0.00 0.00 3.61
1053 1074 3.256178 TGCTGCTACCCTTGCCCA 61.256 61.111 0.00 0.00 0.00 5.36
1377 1406 2.815647 GGCGGTAGCTGTGCTCAC 60.816 66.667 0.00 0.00 44.37 3.51
1398 1427 2.364632 CAGGCCATTGACCGAAATACA 58.635 47.619 5.01 0.00 0.00 2.29
1400 1429 1.065551 GGCCATTGACCGAAATACAGC 59.934 52.381 0.00 0.00 0.00 4.40
1409 1438 4.082300 TGACCGAAATACAGCATGCAAATT 60.082 37.500 21.98 12.91 42.53 1.82
1515 1554 4.390603 GTGAATACGATACCACAAGCACAA 59.609 41.667 0.00 0.00 0.00 3.33
1627 1667 6.966534 ATGGTATCCATTGAATCTTTGGAC 57.033 37.500 6.84 0.00 42.23 4.02
1636 1676 1.278127 GAATCTTTGGACTGTCCCGGA 59.722 52.381 23.42 17.53 35.03 5.14
1768 1814 6.991938 TCAGGAACCAACAGGAAATTTAATG 58.008 36.000 0.00 0.00 0.00 1.90
1773 1819 7.877612 GGAACCAACAGGAAATTTAATGTGATT 59.122 33.333 8.16 4.45 0.00 2.57
1855 1901 8.319143 CAATCATGCATCAGATATTGAGTGTA 57.681 34.615 0.00 0.00 39.68 2.90
2058 2164 7.054491 AGCAGACTGATACAAAATTTGGTTT 57.946 32.000 6.65 0.00 34.12 3.27
2060 2166 7.986889 AGCAGACTGATACAAAATTTGGTTTTT 59.013 29.630 6.65 0.00 37.93 1.94
2062 2168 9.311916 CAGACTGATACAAAATTTGGTTTTTGA 57.688 29.630 10.71 0.00 45.28 2.69
2082 2188 8.604640 TTTTGAATCAATCTATTTGCTTGCAA 57.395 26.923 3.70 3.70 35.16 4.08
2086 2192 7.874016 TGAATCAATCTATTTGCTTGCAAGTTT 59.126 29.630 26.55 12.01 35.16 2.66
2087 2193 8.611654 AATCAATCTATTTGCTTGCAAGTTTT 57.388 26.923 26.55 12.33 35.16 2.43
2088 2194 8.611654 ATCAATCTATTTGCTTGCAAGTTTTT 57.388 26.923 26.55 12.66 35.16 1.94
2089 2195 8.075593 TCAATCTATTTGCTTGCAAGTTTTTC 57.924 30.769 26.55 10.85 35.16 2.29
2101 2207 5.477510 TGCAAGTTTTTCTTTCTCTTTGCA 58.522 33.333 4.64 4.64 33.63 4.08
2133 2239 9.543018 GGACTACAAAACTTTGATAGATTTTCG 57.457 33.333 9.12 0.00 40.55 3.46
2165 2271 4.322057 ACCTCAATGGGATGCTAACTTT 57.678 40.909 0.00 0.00 41.11 2.66
2289 2395 7.989741 CCAGGTTATCACTAGTTCTTTGATGAT 59.010 37.037 0.00 0.00 32.24 2.45
2340 2447 6.035327 GCATTATCAAGTGGCTTTGAATTCAC 59.965 38.462 7.89 0.00 40.21 3.18
2343 2450 4.206375 TCAAGTGGCTTTGAATTCACAGA 58.794 39.130 22.79 2.71 34.32 3.41
2366 2473 9.681692 CAGAATGTTTGTATTGTTGATTCTTGA 57.318 29.630 0.00 0.00 0.00 3.02
2379 2486 6.767902 TGTTGATTCTTGAGAGCTTTGTTAGT 59.232 34.615 0.00 0.00 0.00 2.24
2388 2495 7.452880 TGAGAGCTTTGTTAGTAATGCAATT 57.547 32.000 0.00 0.00 41.28 2.32
2532 2639 3.322254 AGGTTAGGTCAAGAGTGTCACAG 59.678 47.826 5.62 0.00 0.00 3.66
2841 3077 5.871396 ATATGATCACGAGGTACCTTTGT 57.129 39.130 17.53 15.10 0.00 2.83
2919 3167 2.784347 GCTAAAGCTCCCAACAGTCTT 58.216 47.619 0.00 0.00 38.21 3.01
3082 3330 8.621532 TGTATTATGTATGGAAAATCCTCTGC 57.378 34.615 0.00 0.00 37.46 4.26
3095 3343 3.228188 TCCTCTGCTGGTTGTTGAAAT 57.772 42.857 0.00 0.00 0.00 2.17
3106 3360 9.638239 TGCTGGTTGTTGAAATTATAAGAAATC 57.362 29.630 0.00 0.00 0.00 2.17
3137 3391 8.738645 ATTTTCCTGTTTCTGATATGTACTCC 57.261 34.615 0.00 0.00 0.00 3.85
3138 3392 5.871396 TCCTGTTTCTGATATGTACTCCC 57.129 43.478 0.00 0.00 0.00 4.30
3139 3393 5.529289 TCCTGTTTCTGATATGTACTCCCT 58.471 41.667 0.00 0.00 0.00 4.20
3140 3394 5.598830 TCCTGTTTCTGATATGTACTCCCTC 59.401 44.000 0.00 0.00 0.00 4.30
3141 3395 5.221541 CCTGTTTCTGATATGTACTCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
3142 3396 4.341235 TGTTTCTGATATGTACTCCCTCCG 59.659 45.833 0.00 0.00 0.00 4.63
3143 3397 3.878237 TCTGATATGTACTCCCTCCGT 57.122 47.619 0.00 0.00 0.00 4.69
3144 3398 4.987963 TCTGATATGTACTCCCTCCGTA 57.012 45.455 0.00 0.00 0.00 4.02
3145 3399 5.314718 TCTGATATGTACTCCCTCCGTAA 57.685 43.478 0.00 0.00 0.00 3.18
3146 3400 5.698104 TCTGATATGTACTCCCTCCGTAAA 58.302 41.667 0.00 0.00 0.00 2.01
3147 3401 5.533903 TCTGATATGTACTCCCTCCGTAAAC 59.466 44.000 0.00 0.00 0.00 2.01
3148 3402 5.452255 TGATATGTACTCCCTCCGTAAACT 58.548 41.667 0.00 0.00 0.00 2.66
3149 3403 6.604171 TGATATGTACTCCCTCCGTAAACTA 58.396 40.000 0.00 0.00 0.00 2.24
3150 3404 7.062322 TGATATGTACTCCCTCCGTAAACTAA 58.938 38.462 0.00 0.00 0.00 2.24
3151 3405 7.727186 TGATATGTACTCCCTCCGTAAACTAAT 59.273 37.037 0.00 0.00 0.00 1.73
3152 3406 9.236006 GATATGTACTCCCTCCGTAAACTAATA 57.764 37.037 0.00 0.00 0.00 0.98
3153 3407 9.765295 ATATGTACTCCCTCCGTAAACTAATAT 57.235 33.333 0.00 0.00 0.00 1.28
3155 3409 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
3156 3410 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
3157 3411 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3158 3412 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3159 3413 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3160 3414 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3161 3415 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3162 3416 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3163 3417 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3164 3418 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3165 3419 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3166 3420 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3180 3434 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
3181 3435 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
3182 3436 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
3183 3437 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
3184 3438 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
3213 3467 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
3549 3808 4.564782 TGGTCATTTTGAGCTCTGATCT 57.435 40.909 16.19 0.00 44.58 2.75
3647 3906 1.612463 ACAGTTTCTTCTCTACGGCGT 59.388 47.619 19.64 19.64 0.00 5.68
3658 3917 3.922240 TCTCTACGGCGTTTTGTATGTTC 59.078 43.478 21.24 0.00 0.00 3.18
3822 4081 5.634896 CAAGAATGTGGTATGTTCTCTTGC 58.365 41.667 0.00 0.00 33.95 4.01
3905 4164 9.745018 CTTTCATATACCAATCATATCTTGGGT 57.255 33.333 15.00 5.13 46.12 4.51
3913 4172 5.068198 CCAATCATATCTTGGGTGTGGAAAG 59.932 44.000 5.88 0.00 39.62 2.62
3922 4181 0.887387 GGTGTGGAAAGCGTGCCTAA 60.887 55.000 0.00 0.00 0.00 2.69
3972 4232 8.409371 TGTTGCTTACACTGAAATCAAATAACA 58.591 29.630 0.00 0.00 0.00 2.41
3973 4233 8.905702 GTTGCTTACACTGAAATCAAATAACAG 58.094 33.333 0.00 0.00 35.14 3.16
3974 4234 8.389779 TGCTTACACTGAAATCAAATAACAGA 57.610 30.769 0.00 0.00 33.53 3.41
4106 4366 3.498774 AAGTGCTGATCACCTTCTGTT 57.501 42.857 0.00 0.00 46.81 3.16
4126 4386 4.629634 TGTTGTCGCCTGTAAATCATGTAG 59.370 41.667 0.00 0.00 0.00 2.74
4127 4387 4.729227 TGTCGCCTGTAAATCATGTAGA 57.271 40.909 0.00 0.00 0.00 2.59
4128 4388 4.682787 TGTCGCCTGTAAATCATGTAGAG 58.317 43.478 0.00 0.00 0.00 2.43
4129 4389 4.159693 TGTCGCCTGTAAATCATGTAGAGT 59.840 41.667 0.00 0.00 0.00 3.24
4130 4390 5.109903 GTCGCCTGTAAATCATGTAGAGTT 58.890 41.667 0.00 0.00 38.28 3.01
4131 4391 6.127563 TGTCGCCTGTAAATCATGTAGAGTTA 60.128 38.462 0.00 0.00 35.85 2.24
4132 4392 6.755141 GTCGCCTGTAAATCATGTAGAGTTAA 59.245 38.462 0.00 0.00 38.39 2.01
4133 4393 7.438459 GTCGCCTGTAAATCATGTAGAGTTAAT 59.562 37.037 0.00 0.00 38.39 1.40
4134 4394 7.985184 TCGCCTGTAAATCATGTAGAGTTAATT 59.015 33.333 0.00 0.00 38.39 1.40
4135 4395 9.256477 CGCCTGTAAATCATGTAGAGTTAATTA 57.744 33.333 0.00 0.00 38.39 1.40
4157 4417 7.910441 TTACCCTATTAGTACACAAACTTGC 57.090 36.000 0.00 0.00 0.00 4.01
4158 4418 5.871834 ACCCTATTAGTACACAAACTTGCA 58.128 37.500 0.00 0.00 0.00 4.08
4159 4419 5.938125 ACCCTATTAGTACACAAACTTGCAG 59.062 40.000 0.00 0.00 0.00 4.41
4160 4420 5.938125 CCCTATTAGTACACAAACTTGCAGT 59.062 40.000 0.00 0.00 0.00 4.40
4161 4421 6.128282 CCCTATTAGTACACAAACTTGCAGTG 60.128 42.308 0.00 1.76 39.12 3.66
4162 4422 4.545823 TTAGTACACAAACTTGCAGTGC 57.454 40.909 8.58 8.58 36.76 4.40
4163 4423 1.330521 AGTACACAAACTTGCAGTGCG 59.669 47.619 11.20 0.00 36.76 5.34
4164 4424 0.660488 TACACAAACTTGCAGTGCGG 59.340 50.000 11.20 8.47 36.76 5.69
4165 4425 1.299316 CACAAACTTGCAGTGCGGG 60.299 57.895 11.20 8.09 0.00 6.13
4166 4426 1.752694 ACAAACTTGCAGTGCGGGT 60.753 52.632 11.20 8.77 0.00 5.28
4167 4427 0.464735 ACAAACTTGCAGTGCGGGTA 60.465 50.000 11.20 0.00 0.00 3.69
4168 4428 0.040425 CAAACTTGCAGTGCGGGTAC 60.040 55.000 11.20 0.00 0.00 3.34
4169 4429 0.464735 AAACTTGCAGTGCGGGTACA 60.465 50.000 11.20 0.00 0.00 2.90
4170 4430 0.464735 AACTTGCAGTGCGGGTACAA 60.465 50.000 11.20 0.00 0.00 2.41
4171 4431 0.250727 ACTTGCAGTGCGGGTACAAT 60.251 50.000 11.20 0.00 0.00 2.71
4172 4432 0.881118 CTTGCAGTGCGGGTACAATT 59.119 50.000 11.20 0.00 0.00 2.32
4173 4433 1.269448 CTTGCAGTGCGGGTACAATTT 59.731 47.619 11.20 0.00 0.00 1.82
4174 4434 0.878416 TGCAGTGCGGGTACAATTTC 59.122 50.000 11.20 0.00 0.00 2.17
4175 4435 0.878416 GCAGTGCGGGTACAATTTCA 59.122 50.000 0.00 0.00 0.00 2.69
4176 4436 1.472480 GCAGTGCGGGTACAATTTCAT 59.528 47.619 0.00 0.00 0.00 2.57
4177 4437 2.680841 GCAGTGCGGGTACAATTTCATA 59.319 45.455 0.00 0.00 0.00 2.15
4178 4438 3.486875 GCAGTGCGGGTACAATTTCATAC 60.487 47.826 0.00 0.00 0.00 2.39
4179 4439 3.687212 CAGTGCGGGTACAATTTCATACA 59.313 43.478 0.00 0.00 0.00 2.29
4180 4440 4.155099 CAGTGCGGGTACAATTTCATACAA 59.845 41.667 0.00 0.00 0.00 2.41
4181 4441 4.155280 AGTGCGGGTACAATTTCATACAAC 59.845 41.667 0.00 0.00 0.00 3.32
4182 4442 4.072839 TGCGGGTACAATTTCATACAACA 58.927 39.130 0.00 0.00 0.00 3.33
4183 4443 4.519350 TGCGGGTACAATTTCATACAACAA 59.481 37.500 0.00 0.00 0.00 2.83
4184 4444 5.092781 GCGGGTACAATTTCATACAACAAG 58.907 41.667 0.00 0.00 0.00 3.16
4185 4445 5.335348 GCGGGTACAATTTCATACAACAAGT 60.335 40.000 0.00 0.00 0.00 3.16
4186 4446 6.674066 CGGGTACAATTTCATACAACAAGTT 58.326 36.000 0.00 0.00 0.00 2.66
4187 4447 6.580791 CGGGTACAATTTCATACAACAAGTTG 59.419 38.462 11.16 11.16 45.58 3.16
4188 4448 6.364976 GGGTACAATTTCATACAACAAGTTGC 59.635 38.462 12.54 0.00 44.03 4.17
4189 4449 6.920758 GGTACAATTTCATACAACAAGTTGCA 59.079 34.615 12.54 0.39 44.03 4.08
4190 4450 7.436673 GGTACAATTTCATACAACAAGTTGCAA 59.563 33.333 12.54 0.00 44.03 4.08
4191 4451 7.840342 ACAATTTCATACAACAAGTTGCAAA 57.160 28.000 12.54 7.41 44.03 3.68
4192 4452 8.261492 ACAATTTCATACAACAAGTTGCAAAA 57.739 26.923 12.54 8.41 44.03 2.44
4193 4453 8.891720 ACAATTTCATACAACAAGTTGCAAAAT 58.108 25.926 12.54 9.99 44.03 1.82
4194 4454 9.160576 CAATTTCATACAACAAGTTGCAAAATG 57.839 29.630 12.54 5.90 44.03 2.32
4195 4455 8.659925 ATTTCATACAACAAGTTGCAAAATGA 57.340 26.923 17.03 12.63 44.03 2.57
4196 4456 7.462109 TTCATACAACAAGTTGCAAAATGAC 57.538 32.000 17.03 0.00 44.03 3.06
4197 4457 6.804677 TCATACAACAAGTTGCAAAATGACT 58.195 32.000 17.03 1.06 44.03 3.41
4198 4458 6.917477 TCATACAACAAGTTGCAAAATGACTC 59.083 34.615 17.03 0.00 44.03 3.36
4199 4459 5.070770 ACAACAAGTTGCAAAATGACTCA 57.929 34.783 17.03 0.00 44.03 3.41
4200 4460 5.663456 ACAACAAGTTGCAAAATGACTCAT 58.337 33.333 17.03 0.00 44.03 2.90
4201 4461 5.750067 ACAACAAGTTGCAAAATGACTCATC 59.250 36.000 17.03 0.00 44.03 2.92
4202 4462 5.779529 ACAAGTTGCAAAATGACTCATCT 57.220 34.783 17.03 0.00 0.00 2.90
4203 4463 6.152932 ACAAGTTGCAAAATGACTCATCTT 57.847 33.333 17.03 3.29 0.00 2.40
4204 4464 5.981315 ACAAGTTGCAAAATGACTCATCTTG 59.019 36.000 17.03 15.46 39.89 3.02
4205 4465 4.553323 AGTTGCAAAATGACTCATCTTGC 58.447 39.130 19.27 19.27 44.93 4.01
4206 4466 3.581024 TGCAAAATGACTCATCTTGCC 57.419 42.857 21.97 9.11 44.33 4.52
4207 4467 2.231964 TGCAAAATGACTCATCTTGCCC 59.768 45.455 21.97 2.74 44.33 5.36
4208 4468 2.417787 GCAAAATGACTCATCTTGCCCC 60.418 50.000 16.36 0.00 40.61 5.80
4209 4469 2.149973 AAATGACTCATCTTGCCCCC 57.850 50.000 0.00 0.00 0.00 5.40
4210 4470 1.302907 AATGACTCATCTTGCCCCCT 58.697 50.000 0.00 0.00 0.00 4.79
4211 4471 2.196742 ATGACTCATCTTGCCCCCTA 57.803 50.000 0.00 0.00 0.00 3.53
4212 4472 1.965414 TGACTCATCTTGCCCCCTAA 58.035 50.000 0.00 0.00 0.00 2.69
4213 4473 2.274542 TGACTCATCTTGCCCCCTAAA 58.725 47.619 0.00 0.00 0.00 1.85
4214 4474 2.026262 TGACTCATCTTGCCCCCTAAAC 60.026 50.000 0.00 0.00 0.00 2.01
4215 4475 2.239907 GACTCATCTTGCCCCCTAAACT 59.760 50.000 0.00 0.00 0.00 2.66
4216 4476 2.239907 ACTCATCTTGCCCCCTAAACTC 59.760 50.000 0.00 0.00 0.00 3.01
4217 4477 1.209504 TCATCTTGCCCCCTAAACTCG 59.790 52.381 0.00 0.00 0.00 4.18
4218 4478 1.065418 CATCTTGCCCCCTAAACTCGT 60.065 52.381 0.00 0.00 0.00 4.18
4219 4479 1.061546 TCTTGCCCCCTAAACTCGTT 58.938 50.000 0.00 0.00 0.00 3.85
4220 4480 1.422402 TCTTGCCCCCTAAACTCGTTT 59.578 47.619 0.35 0.35 36.63 3.60
4221 4481 2.158579 TCTTGCCCCCTAAACTCGTTTT 60.159 45.455 0.00 0.00 34.23 2.43
4222 4482 1.611519 TGCCCCCTAAACTCGTTTTG 58.388 50.000 0.00 0.00 34.23 2.44
4223 4483 0.242825 GCCCCCTAAACTCGTTTTGC 59.757 55.000 0.00 0.00 34.23 3.68
4224 4484 0.519961 CCCCCTAAACTCGTTTTGCG 59.480 55.000 0.00 0.00 43.01 4.85
4225 4485 0.519961 CCCCTAAACTCGTTTTGCGG 59.480 55.000 0.00 0.00 41.72 5.69
4231 4491 4.914291 CTCGTTTTGCGGGTTCAC 57.086 55.556 0.00 0.00 41.72 3.18
4232 4492 2.317230 CTCGTTTTGCGGGTTCACT 58.683 52.632 0.00 0.00 41.72 3.41
4233 4493 0.041312 CTCGTTTTGCGGGTTCACTG 60.041 55.000 0.00 0.00 41.72 3.66
4234 4494 0.462225 TCGTTTTGCGGGTTCACTGA 60.462 50.000 0.00 0.00 41.72 3.41
4235 4495 0.591170 CGTTTTGCGGGTTCACTGAT 59.409 50.000 0.00 0.00 36.85 2.90
4236 4496 1.662876 CGTTTTGCGGGTTCACTGATG 60.663 52.381 0.00 0.00 36.85 3.07
4237 4497 0.313672 TTTTGCGGGTTCACTGATGC 59.686 50.000 0.00 0.00 0.00 3.91
4238 4498 0.821301 TTTGCGGGTTCACTGATGCA 60.821 50.000 0.00 0.00 0.00 3.96
4239 4499 1.514678 TTGCGGGTTCACTGATGCAC 61.515 55.000 0.00 0.00 31.16 4.57
4240 4500 1.965930 GCGGGTTCACTGATGCACA 60.966 57.895 0.00 0.00 0.00 4.57
4241 4501 1.514678 GCGGGTTCACTGATGCACAA 61.515 55.000 0.00 0.00 0.00 3.33
4242 4502 1.167851 CGGGTTCACTGATGCACAAT 58.832 50.000 0.00 0.00 0.00 2.71
4243 4503 1.541147 CGGGTTCACTGATGCACAATT 59.459 47.619 0.00 0.00 0.00 2.32
4244 4504 2.414559 CGGGTTCACTGATGCACAATTC 60.415 50.000 0.00 0.00 0.00 2.17
4245 4505 2.414559 GGGTTCACTGATGCACAATTCG 60.415 50.000 0.00 0.00 0.00 3.34
4246 4506 2.245096 GTTCACTGATGCACAATTCGC 58.755 47.619 0.00 0.00 0.00 4.70
4247 4507 0.443478 TCACTGATGCACAATTCGCG 59.557 50.000 0.00 0.00 0.00 5.87
4248 4508 0.166597 CACTGATGCACAATTCGCGT 59.833 50.000 5.77 0.00 0.00 6.01
4249 4509 0.443869 ACTGATGCACAATTCGCGTC 59.556 50.000 5.77 10.42 44.13 5.19
4250 4510 0.247814 CTGATGCACAATTCGCGTCC 60.248 55.000 5.77 0.92 43.39 4.79
4251 4511 1.296867 GATGCACAATTCGCGTCCG 60.297 57.895 5.77 0.00 39.10 4.79
4252 4512 3.381169 ATGCACAATTCGCGTCCGC 62.381 57.895 5.77 0.68 37.85 5.54
4253 4513 4.083600 GCACAATTCGCGTCCGCA 62.084 61.111 12.58 0.00 42.06 5.69
4254 4514 2.784596 CACAATTCGCGTCCGCAT 59.215 55.556 12.58 0.00 42.06 4.73
4255 4515 1.134487 CACAATTCGCGTCCGCATT 59.866 52.632 12.58 2.10 42.06 3.56
4256 4516 0.371989 CACAATTCGCGTCCGCATTA 59.628 50.000 12.58 0.00 42.06 1.90
4257 4517 0.650512 ACAATTCGCGTCCGCATTAG 59.349 50.000 12.58 0.06 42.06 1.73
4258 4518 0.654472 CAATTCGCGTCCGCATTAGC 60.654 55.000 12.58 0.00 42.06 3.09
4259 4519 1.772063 AATTCGCGTCCGCATTAGCC 61.772 55.000 12.58 0.00 42.06 3.93
4260 4520 2.916502 ATTCGCGTCCGCATTAGCCA 62.917 55.000 12.58 0.00 42.06 4.75
4261 4521 3.925238 CGCGTCCGCATTAGCCAC 61.925 66.667 12.58 0.00 42.06 5.01
4262 4522 3.925238 GCGTCCGCATTAGCCACG 61.925 66.667 6.82 0.00 43.08 4.94
4263 4523 2.508439 CGTCCGCATTAGCCACGT 60.508 61.111 0.00 0.00 38.24 4.49
4264 4524 2.514013 CGTCCGCATTAGCCACGTC 61.514 63.158 0.00 0.00 38.24 4.34
4265 4525 2.202690 TCCGCATTAGCCACGTCG 60.203 61.111 0.00 0.00 37.52 5.12
4266 4526 3.261951 CCGCATTAGCCACGTCGG 61.262 66.667 0.00 0.00 37.52 4.79
4276 4536 4.446413 CACGTCGGCCCCTGGTAC 62.446 72.222 0.00 0.00 0.00 3.34
4277 4537 4.691359 ACGTCGGCCCCTGGTACT 62.691 66.667 0.00 0.00 0.00 2.73
4278 4538 3.387947 CGTCGGCCCCTGGTACTT 61.388 66.667 0.00 0.00 0.00 2.24
4279 4539 2.267961 GTCGGCCCCTGGTACTTG 59.732 66.667 0.00 0.00 0.00 3.16
4280 4540 3.712907 TCGGCCCCTGGTACTTGC 61.713 66.667 0.00 0.00 0.00 4.01
4281 4541 4.796495 CGGCCCCTGGTACTTGCC 62.796 72.222 0.00 0.00 38.74 4.52
4282 4542 4.442454 GGCCCCTGGTACTTGCCC 62.442 72.222 0.00 0.00 36.07 5.36
4283 4543 3.657350 GCCCCTGGTACTTGCCCA 61.657 66.667 0.00 0.00 0.00 5.36
4284 4544 2.355115 CCCCTGGTACTTGCCCAC 59.645 66.667 0.00 0.00 0.00 4.61
4285 4545 2.046314 CCCTGGTACTTGCCCACG 60.046 66.667 0.00 0.00 0.00 4.94
4286 4546 2.747686 CCTGGTACTTGCCCACGT 59.252 61.111 0.00 0.00 0.00 4.49
4287 4547 1.072505 CCTGGTACTTGCCCACGTT 59.927 57.895 0.00 0.00 0.00 3.99
4288 4548 0.536460 CCTGGTACTTGCCCACGTTT 60.536 55.000 0.00 0.00 0.00 3.60
4289 4549 1.270947 CCTGGTACTTGCCCACGTTTA 60.271 52.381 0.00 0.00 0.00 2.01
4290 4550 2.073816 CTGGTACTTGCCCACGTTTAG 58.926 52.381 0.00 0.00 0.00 1.85
4291 4551 1.270947 TGGTACTTGCCCACGTTTAGG 60.271 52.381 0.00 0.00 0.00 2.69
4292 4552 1.002315 GGTACTTGCCCACGTTTAGGA 59.998 52.381 0.21 0.00 0.00 2.94
4293 4553 2.355412 GGTACTTGCCCACGTTTAGGAT 60.355 50.000 0.21 0.00 0.00 3.24
4294 4554 3.118665 GGTACTTGCCCACGTTTAGGATA 60.119 47.826 0.21 0.00 0.00 2.59
4295 4555 3.706600 ACTTGCCCACGTTTAGGATAA 57.293 42.857 0.21 0.00 0.00 1.75
4296 4556 4.230745 ACTTGCCCACGTTTAGGATAAT 57.769 40.909 0.21 0.00 0.00 1.28
4297 4557 4.595986 ACTTGCCCACGTTTAGGATAATT 58.404 39.130 0.21 0.00 0.00 1.40
4298 4558 5.014202 ACTTGCCCACGTTTAGGATAATTT 58.986 37.500 0.21 0.00 0.00 1.82
4299 4559 4.974368 TGCCCACGTTTAGGATAATTTG 57.026 40.909 0.21 0.00 0.00 2.32
4300 4560 3.129638 TGCCCACGTTTAGGATAATTTGC 59.870 43.478 0.21 0.00 0.00 3.68
4301 4561 3.129638 GCCCACGTTTAGGATAATTTGCA 59.870 43.478 0.21 0.00 0.00 4.08
4302 4562 4.733523 GCCCACGTTTAGGATAATTTGCAG 60.734 45.833 0.21 0.00 0.00 4.41
4303 4563 4.202010 CCCACGTTTAGGATAATTTGCAGG 60.202 45.833 0.00 0.00 0.00 4.85
4304 4564 4.638421 CCACGTTTAGGATAATTTGCAGGA 59.362 41.667 0.00 0.00 0.00 3.86
4305 4565 5.448632 CCACGTTTAGGATAATTTGCAGGAC 60.449 44.000 0.00 0.00 0.00 3.85
4306 4566 4.638865 ACGTTTAGGATAATTTGCAGGACC 59.361 41.667 0.00 0.00 0.00 4.46
4307 4567 4.036380 CGTTTAGGATAATTTGCAGGACCC 59.964 45.833 0.00 0.00 0.00 4.46
4308 4568 2.755952 AGGATAATTTGCAGGACCCC 57.244 50.000 0.00 0.00 0.00 4.95
4309 4569 1.217942 AGGATAATTTGCAGGACCCCC 59.782 52.381 0.00 0.00 0.00 5.40
4324 4584 3.542676 CCCCCGCTGTATGCCGTA 61.543 66.667 0.00 0.00 38.78 4.02
4325 4585 2.502093 CCCCGCTGTATGCCGTAA 59.498 61.111 0.00 0.00 38.78 3.18
4326 4586 1.153329 CCCCGCTGTATGCCGTAAA 60.153 57.895 0.00 0.00 38.78 2.01
4327 4587 0.534203 CCCCGCTGTATGCCGTAAAT 60.534 55.000 0.00 0.00 38.78 1.40
4328 4588 1.270412 CCCCGCTGTATGCCGTAAATA 60.270 52.381 0.00 0.00 38.78 1.40
4329 4589 2.066262 CCCGCTGTATGCCGTAAATAG 58.934 52.381 0.00 0.00 38.78 1.73
4330 4590 2.066262 CCGCTGTATGCCGTAAATAGG 58.934 52.381 0.00 0.00 38.78 2.57
4331 4591 2.547218 CCGCTGTATGCCGTAAATAGGT 60.547 50.000 0.00 0.00 38.78 3.08
4332 4592 2.729882 CGCTGTATGCCGTAAATAGGTC 59.270 50.000 0.00 0.00 38.78 3.85
4333 4593 3.552273 CGCTGTATGCCGTAAATAGGTCT 60.552 47.826 0.00 0.00 38.78 3.85
4334 4594 3.988517 GCTGTATGCCGTAAATAGGTCTC 59.011 47.826 0.00 0.00 35.15 3.36
4335 4595 4.262079 GCTGTATGCCGTAAATAGGTCTCT 60.262 45.833 0.00 0.00 35.15 3.10
4336 4596 5.048224 GCTGTATGCCGTAAATAGGTCTCTA 60.048 44.000 0.00 0.00 35.15 2.43
4337 4597 6.570672 TGTATGCCGTAAATAGGTCTCTAG 57.429 41.667 0.00 0.00 0.00 2.43
4338 4598 4.522722 ATGCCGTAAATAGGTCTCTAGC 57.477 45.455 0.00 0.00 0.00 3.42
4339 4599 2.626743 TGCCGTAAATAGGTCTCTAGCC 59.373 50.000 0.00 0.00 0.00 3.93
4340 4600 2.029200 GCCGTAAATAGGTCTCTAGCCC 60.029 54.545 0.00 0.00 0.00 5.19
4341 4601 3.228453 CCGTAAATAGGTCTCTAGCCCA 58.772 50.000 0.00 0.00 0.00 5.36
4342 4602 3.640029 CCGTAAATAGGTCTCTAGCCCAA 59.360 47.826 0.00 0.00 0.00 4.12
4343 4603 4.501058 CCGTAAATAGGTCTCTAGCCCAAC 60.501 50.000 0.00 0.00 0.00 3.77
4344 4604 4.501058 CGTAAATAGGTCTCTAGCCCAACC 60.501 50.000 0.00 0.00 0.00 3.77
4345 4605 2.868964 ATAGGTCTCTAGCCCAACCA 57.131 50.000 0.00 0.00 34.09 3.67
4346 4606 2.868964 TAGGTCTCTAGCCCAACCAT 57.131 50.000 0.00 0.00 34.09 3.55
4347 4607 2.868964 AGGTCTCTAGCCCAACCATA 57.131 50.000 0.00 0.00 34.09 2.74
4348 4608 3.352611 AGGTCTCTAGCCCAACCATAT 57.647 47.619 0.00 0.00 34.09 1.78
4349 4609 3.243724 AGGTCTCTAGCCCAACCATATC 58.756 50.000 0.00 0.00 34.09 1.63
4350 4610 2.303311 GGTCTCTAGCCCAACCATATCC 59.697 54.545 0.00 0.00 0.00 2.59
4351 4611 2.303311 GTCTCTAGCCCAACCATATCCC 59.697 54.545 0.00 0.00 0.00 3.85
4352 4612 1.276421 CTCTAGCCCAACCATATCCCG 59.724 57.143 0.00 0.00 0.00 5.14
4353 4613 1.056660 CTAGCCCAACCATATCCCGT 58.943 55.000 0.00 0.00 0.00 5.28
4354 4614 2.158279 TCTAGCCCAACCATATCCCGTA 60.158 50.000 0.00 0.00 0.00 4.02
4355 4615 1.056660 AGCCCAACCATATCCCGTAG 58.943 55.000 0.00 0.00 0.00 3.51
4356 4616 0.605589 GCCCAACCATATCCCGTAGC 60.606 60.000 0.00 0.00 0.00 3.58
4357 4617 1.056660 CCCAACCATATCCCGTAGCT 58.943 55.000 0.00 0.00 0.00 3.32
4358 4618 1.002087 CCCAACCATATCCCGTAGCTC 59.998 57.143 0.00 0.00 0.00 4.09
4359 4619 1.971357 CCAACCATATCCCGTAGCTCT 59.029 52.381 0.00 0.00 0.00 4.09
4360 4620 2.368875 CCAACCATATCCCGTAGCTCTT 59.631 50.000 0.00 0.00 0.00 2.85
4361 4621 3.181454 CCAACCATATCCCGTAGCTCTTT 60.181 47.826 0.00 0.00 0.00 2.52
4362 4622 4.451900 CAACCATATCCCGTAGCTCTTTT 58.548 43.478 0.00 0.00 0.00 2.27
4363 4623 4.073293 ACCATATCCCGTAGCTCTTTTG 57.927 45.455 0.00 0.00 0.00 2.44
4364 4624 3.454812 ACCATATCCCGTAGCTCTTTTGT 59.545 43.478 0.00 0.00 0.00 2.83
4365 4625 4.058817 CCATATCCCGTAGCTCTTTTGTC 58.941 47.826 0.00 0.00 0.00 3.18
4366 4626 4.202264 CCATATCCCGTAGCTCTTTTGTCT 60.202 45.833 0.00 0.00 0.00 3.41
4367 4627 3.983044 ATCCCGTAGCTCTTTTGTCTT 57.017 42.857 0.00 0.00 0.00 3.01
4368 4628 3.040147 TCCCGTAGCTCTTTTGTCTTG 57.960 47.619 0.00 0.00 0.00 3.02
4369 4629 2.367567 TCCCGTAGCTCTTTTGTCTTGT 59.632 45.455 0.00 0.00 0.00 3.16
4370 4630 3.575256 TCCCGTAGCTCTTTTGTCTTGTA 59.425 43.478 0.00 0.00 0.00 2.41
4371 4631 4.222145 TCCCGTAGCTCTTTTGTCTTGTAT 59.778 41.667 0.00 0.00 0.00 2.29
4372 4632 4.567159 CCCGTAGCTCTTTTGTCTTGTATC 59.433 45.833 0.00 0.00 0.00 2.24
4373 4633 5.411781 CCGTAGCTCTTTTGTCTTGTATCT 58.588 41.667 0.00 0.00 0.00 1.98
4374 4634 5.869888 CCGTAGCTCTTTTGTCTTGTATCTT 59.130 40.000 0.00 0.00 0.00 2.40
4375 4635 6.035112 CCGTAGCTCTTTTGTCTTGTATCTTC 59.965 42.308 0.00 0.00 0.00 2.87
4376 4636 6.237332 CGTAGCTCTTTTGTCTTGTATCTTCG 60.237 42.308 0.00 0.00 0.00 3.79
4377 4637 5.784177 AGCTCTTTTGTCTTGTATCTTCGA 58.216 37.500 0.00 0.00 0.00 3.71
4378 4638 5.635700 AGCTCTTTTGTCTTGTATCTTCGAC 59.364 40.000 0.00 0.00 0.00 4.20
4379 4639 5.163943 GCTCTTTTGTCTTGTATCTTCGACC 60.164 44.000 0.00 0.00 0.00 4.79
4380 4640 6.097915 TCTTTTGTCTTGTATCTTCGACCT 57.902 37.500 0.00 0.00 0.00 3.85
4381 4641 6.157211 TCTTTTGTCTTGTATCTTCGACCTC 58.843 40.000 0.00 0.00 0.00 3.85
4382 4642 5.723672 TTTGTCTTGTATCTTCGACCTCT 57.276 39.130 0.00 0.00 0.00 3.69
4383 4643 4.966965 TGTCTTGTATCTTCGACCTCTC 57.033 45.455 0.00 0.00 0.00 3.20
4384 4644 4.590918 TGTCTTGTATCTTCGACCTCTCT 58.409 43.478 0.00 0.00 0.00 3.10
4385 4645 4.396478 TGTCTTGTATCTTCGACCTCTCTG 59.604 45.833 0.00 0.00 0.00 3.35
4386 4646 4.396790 GTCTTGTATCTTCGACCTCTCTGT 59.603 45.833 0.00 0.00 0.00 3.41
4387 4647 5.010933 TCTTGTATCTTCGACCTCTCTGTT 58.989 41.667 0.00 0.00 0.00 3.16
4388 4648 5.477291 TCTTGTATCTTCGACCTCTCTGTTT 59.523 40.000 0.00 0.00 0.00 2.83
4389 4649 5.723672 TGTATCTTCGACCTCTCTGTTTT 57.276 39.130 0.00 0.00 0.00 2.43
4390 4650 6.097915 TGTATCTTCGACCTCTCTGTTTTT 57.902 37.500 0.00 0.00 0.00 1.94
4407 4667 1.544724 TTTTCCTCAAATCCCCAGCG 58.455 50.000 0.00 0.00 0.00 5.18
4408 4668 0.695924 TTTCCTCAAATCCCCAGCGA 59.304 50.000 0.00 0.00 0.00 4.93
4409 4669 0.695924 TTCCTCAAATCCCCAGCGAA 59.304 50.000 0.00 0.00 0.00 4.70
4410 4670 0.695924 TCCTCAAATCCCCAGCGAAA 59.304 50.000 0.00 0.00 0.00 3.46
4411 4671 1.284785 TCCTCAAATCCCCAGCGAAAT 59.715 47.619 0.00 0.00 0.00 2.17
4412 4672 1.678101 CCTCAAATCCCCAGCGAAATC 59.322 52.381 0.00 0.00 0.00 2.17
4413 4673 1.678101 CTCAAATCCCCAGCGAAATCC 59.322 52.381 0.00 0.00 0.00 3.01
4414 4674 0.381801 CAAATCCCCAGCGAAATCCG 59.618 55.000 0.00 0.00 42.21 4.18
4415 4675 0.034477 AAATCCCCAGCGAAATCCGT 60.034 50.000 0.00 0.00 41.15 4.69
4416 4676 0.834612 AATCCCCAGCGAAATCCGTA 59.165 50.000 0.00 0.00 41.15 4.02
4417 4677 0.393077 ATCCCCAGCGAAATCCGTAG 59.607 55.000 0.00 0.00 41.15 3.51
4418 4678 0.685131 TCCCCAGCGAAATCCGTAGA 60.685 55.000 0.00 0.00 41.15 2.59
4419 4679 0.529992 CCCCAGCGAAATCCGTAGAC 60.530 60.000 0.00 0.00 41.15 2.59
4420 4680 0.529992 CCCAGCGAAATCCGTAGACC 60.530 60.000 0.00 0.00 41.15 3.85
4421 4681 0.460311 CCAGCGAAATCCGTAGACCT 59.540 55.000 0.00 0.00 41.15 3.85
4422 4682 1.536284 CCAGCGAAATCCGTAGACCTC 60.536 57.143 0.00 0.00 41.15 3.85
4423 4683 1.405821 CAGCGAAATCCGTAGACCTCT 59.594 52.381 0.00 0.00 41.15 3.69
4424 4684 1.677052 AGCGAAATCCGTAGACCTCTC 59.323 52.381 0.00 0.00 41.15 3.20
4425 4685 1.269154 GCGAAATCCGTAGACCTCTCC 60.269 57.143 0.00 0.00 41.15 3.71
4426 4686 2.299521 CGAAATCCGTAGACCTCTCCT 58.700 52.381 0.00 0.00 0.00 3.69
4427 4687 2.291190 CGAAATCCGTAGACCTCTCCTC 59.709 54.545 0.00 0.00 0.00 3.71
4428 4688 3.558033 GAAATCCGTAGACCTCTCCTCT 58.442 50.000 0.00 0.00 0.00 3.69
4429 4689 2.649531 ATCCGTAGACCTCTCCTCTG 57.350 55.000 0.00 0.00 0.00 3.35
4430 4690 1.287217 TCCGTAGACCTCTCCTCTGT 58.713 55.000 0.00 0.00 0.00 3.41
4431 4691 1.634459 TCCGTAGACCTCTCCTCTGTT 59.366 52.381 0.00 0.00 0.00 3.16
4432 4692 1.746220 CCGTAGACCTCTCCTCTGTTG 59.254 57.143 0.00 0.00 0.00 3.33
4433 4693 2.438411 CGTAGACCTCTCCTCTGTTGT 58.562 52.381 0.00 0.00 0.00 3.32
4434 4694 2.820787 CGTAGACCTCTCCTCTGTTGTT 59.179 50.000 0.00 0.00 0.00 2.83
4435 4695 4.008330 CGTAGACCTCTCCTCTGTTGTTA 58.992 47.826 0.00 0.00 0.00 2.41
4436 4696 4.142643 CGTAGACCTCTCCTCTGTTGTTAC 60.143 50.000 0.00 0.00 0.00 2.50
4437 4697 3.166679 AGACCTCTCCTCTGTTGTTACC 58.833 50.000 0.00 0.00 0.00 2.85
4438 4698 2.234168 GACCTCTCCTCTGTTGTTACCC 59.766 54.545 0.00 0.00 0.00 3.69
4439 4699 1.555533 CCTCTCCTCTGTTGTTACCCC 59.444 57.143 0.00 0.00 0.00 4.95
4440 4700 2.257207 CTCTCCTCTGTTGTTACCCCA 58.743 52.381 0.00 0.00 0.00 4.96
4441 4701 2.637872 CTCTCCTCTGTTGTTACCCCAA 59.362 50.000 0.00 0.00 0.00 4.12
4442 4702 3.256704 TCTCCTCTGTTGTTACCCCAAT 58.743 45.455 0.00 0.00 0.00 3.16
4443 4703 3.009033 TCTCCTCTGTTGTTACCCCAATG 59.991 47.826 0.00 0.00 0.00 2.82
4444 4704 2.714250 TCCTCTGTTGTTACCCCAATGT 59.286 45.455 0.00 0.00 0.00 2.71
4445 4705 3.081804 CCTCTGTTGTTACCCCAATGTC 58.918 50.000 0.00 0.00 0.00 3.06
4446 4706 3.244911 CCTCTGTTGTTACCCCAATGTCT 60.245 47.826 0.00 0.00 0.00 3.41
4447 4707 3.750371 TCTGTTGTTACCCCAATGTCTG 58.250 45.455 0.00 0.00 0.00 3.51
4448 4708 2.228822 CTGTTGTTACCCCAATGTCTGC 59.771 50.000 0.00 0.00 0.00 4.26
4449 4709 1.199097 GTTGTTACCCCAATGTCTGCG 59.801 52.381 0.00 0.00 0.00 5.18
4450 4710 0.958382 TGTTACCCCAATGTCTGCGC 60.958 55.000 0.00 0.00 0.00 6.09
4451 4711 0.958382 GTTACCCCAATGTCTGCGCA 60.958 55.000 10.98 10.98 0.00 6.09
4452 4712 0.250945 TTACCCCAATGTCTGCGCAA 60.251 50.000 13.05 0.00 0.00 4.85
4453 4713 0.676466 TACCCCAATGTCTGCGCAAG 60.676 55.000 13.05 5.99 43.44 4.01
4454 4714 2.703798 CCCCAATGTCTGCGCAAGG 61.704 63.158 13.05 0.00 38.28 3.61
4455 4715 1.675310 CCCAATGTCTGCGCAAGGA 60.675 57.895 13.05 2.68 38.28 3.36
4456 4716 1.503542 CCAATGTCTGCGCAAGGAC 59.496 57.895 19.72 19.72 38.28 3.85
4457 4717 1.133253 CAATGTCTGCGCAAGGACG 59.867 57.895 20.70 6.30 35.45 4.79
4458 4718 2.034879 AATGTCTGCGCAAGGACGG 61.035 57.895 20.70 5.60 35.45 4.79
4464 4724 4.389576 GCGCAAGGACGGCACAAG 62.390 66.667 0.30 0.00 38.28 3.16
4465 4725 3.726517 CGCAAGGACGGCACAAGG 61.727 66.667 0.00 0.00 0.00 3.61
4466 4726 4.043200 GCAAGGACGGCACAAGGC 62.043 66.667 0.00 0.00 43.74 4.35
4486 4746 4.678269 CTCACCGTGACGCGACGT 62.678 66.667 15.93 4.60 45.10 4.34
4511 4771 3.912907 GGCGGATCGTGGACGGAT 61.913 66.667 0.00 0.00 40.29 4.18
4512 4772 2.658593 GCGGATCGTGGACGGATG 60.659 66.667 0.00 0.00 40.29 3.51
4513 4773 2.027605 CGGATCGTGGACGGATGG 59.972 66.667 0.00 0.00 40.29 3.51
4514 4774 2.421739 GGATCGTGGACGGATGGG 59.578 66.667 0.00 0.00 40.29 4.00
4515 4775 2.280186 GATCGTGGACGGATGGGC 60.280 66.667 0.00 0.00 40.29 5.36
4516 4776 2.764128 ATCGTGGACGGATGGGCT 60.764 61.111 0.00 0.00 40.29 5.19
4517 4777 2.978452 GATCGTGGACGGATGGGCTG 62.978 65.000 0.00 0.00 40.29 4.85
4518 4778 4.838152 CGTGGACGGATGGGCTGG 62.838 72.222 0.00 0.00 35.37 4.85
4519 4779 4.489771 GTGGACGGATGGGCTGGG 62.490 72.222 0.00 0.00 0.00 4.45
4540 4800 2.244382 CGACGTTGGTGTTCGCAC 59.756 61.111 0.00 0.00 46.91 5.34
4541 4801 2.235016 CGACGTTGGTGTTCGCACT 61.235 57.895 0.00 0.00 46.81 4.40
4542 4802 1.563173 GACGTTGGTGTTCGCACTC 59.437 57.895 0.00 0.00 46.81 3.51
4543 4803 2.142418 GACGTTGGTGTTCGCACTCG 62.142 60.000 0.00 0.00 46.81 4.18
4544 4804 2.248431 GTTGGTGTTCGCACTCGC 59.752 61.111 0.00 0.00 46.81 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.008217 CCGTTCTTGTTTGGTTACATCTTGA 59.992 40.000 0.00 0.00 0.00 3.02
20 21 4.008330 TCACAACCGTTCTTGTTTGGTTA 58.992 39.130 0.00 0.00 42.60 2.85
53 54 2.689983 CCTGTTAATCTGGGTGATTGCC 59.310 50.000 0.00 0.00 44.40 4.52
89 90 2.430332 CCGTATGCATGGGTTTGGAAAT 59.570 45.455 10.16 0.00 0.00 2.17
107 108 2.362717 GCTGCTAGGTCTTCTTATCCGT 59.637 50.000 0.00 0.00 0.00 4.69
205 209 4.636435 CACGCGGTGGGGTTCCTT 62.636 66.667 12.47 0.00 37.19 3.36
587 591 4.864334 CATGGGAGGAGGGCACGC 62.864 72.222 0.00 0.00 0.00 5.34
641 648 1.132640 GACGCAGATGCAACGAACC 59.867 57.895 5.55 0.00 42.21 3.62
734 750 0.321298 GTACTTCCTTTCGCTGCCCA 60.321 55.000 0.00 0.00 0.00 5.36
735 751 0.321298 TGTACTTCCTTTCGCTGCCC 60.321 55.000 0.00 0.00 0.00 5.36
769 785 2.531206 GTTACGATCTGACTGACAGCC 58.469 52.381 1.25 0.00 45.38 4.85
813 829 2.754375 GGCCGACCCCTCAAGAAA 59.246 61.111 0.00 0.00 0.00 2.52
824 840 3.325201 AAAGATCCCGTGGGCCGAC 62.325 63.158 8.02 8.02 39.56 4.79
825 841 3.006728 AAAGATCCCGTGGGCCGA 61.007 61.111 0.00 0.00 39.56 5.54
826 842 2.824041 CAAAGATCCCGTGGGCCG 60.824 66.667 0.00 0.00 34.68 6.13
827 843 2.046285 CACAAAGATCCCGTGGGCC 61.046 63.158 0.00 0.00 34.68 5.80
828 844 0.608035 TTCACAAAGATCCCGTGGGC 60.608 55.000 0.00 0.00 34.68 5.36
829 845 1.003118 TCTTCACAAAGATCCCGTGGG 59.997 52.381 0.00 0.00 36.59 4.61
830 846 2.472695 TCTTCACAAAGATCCCGTGG 57.527 50.000 6.85 0.00 36.59 4.94
831 847 2.744202 CCTTCTTCACAAAGATCCCGTG 59.256 50.000 0.00 0.00 41.12 4.94
832 848 2.637872 TCCTTCTTCACAAAGATCCCGT 59.362 45.455 0.00 0.00 41.12 5.28
833 849 3.334583 TCCTTCTTCACAAAGATCCCG 57.665 47.619 0.00 0.00 41.12 5.14
834 850 3.950395 CCATCCTTCTTCACAAAGATCCC 59.050 47.826 0.00 0.00 41.12 3.85
835 851 3.379688 GCCATCCTTCTTCACAAAGATCC 59.620 47.826 0.00 0.00 41.12 3.36
836 852 3.064545 CGCCATCCTTCTTCACAAAGATC 59.935 47.826 0.00 0.00 41.12 2.75
837 853 3.012518 CGCCATCCTTCTTCACAAAGAT 58.987 45.455 0.00 0.00 41.12 2.40
838 854 2.426522 CGCCATCCTTCTTCACAAAGA 58.573 47.619 0.00 0.00 39.78 2.52
839 855 1.470098 CCGCCATCCTTCTTCACAAAG 59.530 52.381 0.00 0.00 0.00 2.77
840 856 1.073125 TCCGCCATCCTTCTTCACAAA 59.927 47.619 0.00 0.00 0.00 2.83
841 857 0.690192 TCCGCCATCCTTCTTCACAA 59.310 50.000 0.00 0.00 0.00 3.33
842 858 0.911769 ATCCGCCATCCTTCTTCACA 59.088 50.000 0.00 0.00 0.00 3.58
843 859 1.587547 GATCCGCCATCCTTCTTCAC 58.412 55.000 0.00 0.00 0.00 3.18
896 914 0.689745 AGCTACCTAATCGGCCCACA 60.690 55.000 0.00 0.00 35.61 4.17
923 944 1.079405 GAAGATCGCGACCAACCCA 60.079 57.895 12.93 0.00 0.00 4.51
924 945 0.391263 AAGAAGATCGCGACCAACCC 60.391 55.000 12.93 0.00 0.00 4.11
925 946 1.393883 GAAAGAAGATCGCGACCAACC 59.606 52.381 12.93 0.00 0.00 3.77
927 948 2.743636 AGAAAGAAGATCGCGACCAA 57.256 45.000 12.93 0.00 0.00 3.67
930 951 2.121009 GGCTAGAAAGAAGATCGCGAC 58.879 52.381 12.93 5.67 0.00 5.19
932 953 1.124462 CGGCTAGAAAGAAGATCGCG 58.876 55.000 0.00 0.00 0.00 5.87
933 954 0.855995 GCGGCTAGAAAGAAGATCGC 59.144 55.000 0.00 0.00 33.52 4.58
935 956 1.139058 TGGGCGGCTAGAAAGAAGATC 59.861 52.381 9.56 0.00 0.00 2.75
936 957 1.139853 CTGGGCGGCTAGAAAGAAGAT 59.860 52.381 17.94 0.00 0.00 2.40
938 959 0.250513 ACTGGGCGGCTAGAAAGAAG 59.749 55.000 28.95 1.30 0.00 2.85
939 960 0.036388 CACTGGGCGGCTAGAAAGAA 60.036 55.000 28.95 0.00 0.00 2.52
940 961 1.192146 ACACTGGGCGGCTAGAAAGA 61.192 55.000 28.95 0.00 0.00 2.52
941 962 0.535335 TACACTGGGCGGCTAGAAAG 59.465 55.000 28.95 18.58 0.00 2.62
942 963 0.248289 GTACACTGGGCGGCTAGAAA 59.752 55.000 28.95 10.34 0.00 2.52
1027 1048 1.222113 GGTAGCAGCAGAAGGGGAC 59.778 63.158 0.00 0.00 0.00 4.46
1028 1049 1.995626 GGGTAGCAGCAGAAGGGGA 60.996 63.158 0.00 0.00 0.00 4.81
1377 1406 1.676006 GTATTTCGGTCAATGGCCTGG 59.324 52.381 3.32 0.00 0.00 4.45
1398 1427 6.759827 GTCTTGGAATTGATAATTTGCATGCT 59.240 34.615 20.33 0.00 0.00 3.79
1400 1429 6.480981 GGGTCTTGGAATTGATAATTTGCATG 59.519 38.462 0.00 0.00 0.00 4.06
1409 1438 4.879295 ACCATGGGTCTTGGAATTGATA 57.121 40.909 18.09 0.00 37.69 2.15
1515 1554 4.008074 ACTGAATCAAACACGACCAGAT 57.992 40.909 0.00 0.00 0.00 2.90
1627 1667 2.359900 CTCAAAGGAAATCCGGGACAG 58.640 52.381 0.00 0.00 42.08 3.51
1636 1676 2.859165 TCTCGGTGCTCAAAGGAAAT 57.141 45.000 0.00 0.00 0.00 2.17
1810 1856 4.926860 TGCTCATTTACACGTGAAGATG 57.073 40.909 25.01 20.14 0.00 2.90
1850 1896 8.467598 AGTCGAATGTACTTGATACAATACACT 58.532 33.333 0.00 0.00 46.90 3.55
1855 1901 9.261180 CCAATAGTCGAATGTACTTGATACAAT 57.739 33.333 0.00 0.00 46.90 2.71
1965 2011 9.850198 TTCTCTTAGAATACTCCCTTACTACTC 57.150 37.037 0.00 0.00 0.00 2.59
1971 2017 7.399191 TGCAACTTCTCTTAGAATACTCCCTTA 59.601 37.037 0.00 0.00 33.13 2.69
2058 2164 7.874016 ACTTGCAAGCAAATAGATTGATTCAAA 59.126 29.630 26.27 0.00 43.91 2.69
2060 2166 6.927416 ACTTGCAAGCAAATAGATTGATTCA 58.073 32.000 26.27 0.00 43.91 2.57
2069 2175 8.134905 AGAAAGAAAAACTTGCAAGCAAATAG 57.865 30.769 26.27 1.57 38.98 1.73
2082 2188 7.922811 CCAAGTATGCAAAGAGAAAGAAAAACT 59.077 33.333 0.00 0.00 0.00 2.66
2086 2192 6.772716 AGTCCAAGTATGCAAAGAGAAAGAAA 59.227 34.615 0.00 0.00 0.00 2.52
2087 2193 6.299141 AGTCCAAGTATGCAAAGAGAAAGAA 58.701 36.000 0.00 0.00 0.00 2.52
2088 2194 5.869579 AGTCCAAGTATGCAAAGAGAAAGA 58.130 37.500 0.00 0.00 0.00 2.52
2089 2195 6.650807 TGTAGTCCAAGTATGCAAAGAGAAAG 59.349 38.462 0.00 0.00 0.00 2.62
2165 2271 5.794894 TGCCAAAACCTACAAAAGAACAAA 58.205 33.333 0.00 0.00 0.00 2.83
2221 2327 6.883217 AGACATAGCTGAATGGCCTATTAATG 59.117 38.462 3.32 0.47 35.28 1.90
2340 2447 9.681692 TCAAGAATCAACAATACAAACATTCTG 57.318 29.630 0.00 0.00 31.14 3.02
2343 2450 9.903682 CTCTCAAGAATCAACAATACAAACATT 57.096 29.630 0.00 0.00 0.00 2.71
2361 2468 6.230472 TGCATTACTAACAAAGCTCTCAAGA 58.770 36.000 0.00 0.00 0.00 3.02
2366 2473 7.219484 ACAATTGCATTACTAACAAAGCTCT 57.781 32.000 5.05 0.00 0.00 4.09
2388 2495 6.267471 AGCAGAACTTCATTTAATTTGGGACA 59.733 34.615 0.00 0.00 0.00 4.02
2532 2639 2.479566 TTCCAACTGCATCCAGAGAC 57.520 50.000 0.00 0.00 41.77 3.36
2841 3077 6.540189 GGAATGCTAACTGAAGATTGCTCTAA 59.460 38.462 0.00 0.00 0.00 2.10
3005 3253 1.851666 CAACCACACAACAAATGCGAC 59.148 47.619 0.00 0.00 0.00 5.19
3082 3330 9.840427 ACGATTTCTTATAATTTCAACAACCAG 57.160 29.630 0.00 0.00 0.00 4.00
3131 3385 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3132 3386 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3133 3387 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3134 3388 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3135 3389 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3136 3390 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3137 3391 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3138 3392 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3139 3393 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3140 3394 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3154 3408 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
3155 3409 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
3156 3410 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
3157 3411 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
3158 3412 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
3187 3441 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
3188 3442 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
3189 3443 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3197 3451 9.710818 TGATAACTACTCCCTCTGTAAACTAAT 57.289 33.333 0.00 0.00 0.00 1.73
3198 3452 9.710818 ATGATAACTACTCCCTCTGTAAACTAA 57.289 33.333 0.00 0.00 0.00 2.24
3199 3453 9.352191 GATGATAACTACTCCCTCTGTAAACTA 57.648 37.037 0.00 0.00 0.00 2.24
3200 3454 7.288158 GGATGATAACTACTCCCTCTGTAAACT 59.712 40.741 0.00 0.00 0.00 2.66
3201 3455 7.288158 AGGATGATAACTACTCCCTCTGTAAAC 59.712 40.741 0.00 0.00 0.00 2.01
3202 3456 7.363031 AGGATGATAACTACTCCCTCTGTAAA 58.637 38.462 0.00 0.00 0.00 2.01
3203 3457 6.923670 AGGATGATAACTACTCCCTCTGTAA 58.076 40.000 0.00 0.00 0.00 2.41
3204 3458 6.532119 AGGATGATAACTACTCCCTCTGTA 57.468 41.667 0.00 0.00 0.00 2.74
3205 3459 5.411103 AGGATGATAACTACTCCCTCTGT 57.589 43.478 0.00 0.00 0.00 3.41
3206 3460 6.739331 AAAGGATGATAACTACTCCCTCTG 57.261 41.667 0.00 0.00 0.00 3.35
3207 3461 7.403231 TCAAAAAGGATGATAACTACTCCCTCT 59.597 37.037 0.00 0.00 0.00 3.69
3208 3462 7.565680 TCAAAAAGGATGATAACTACTCCCTC 58.434 38.462 0.00 0.00 0.00 4.30
3209 3463 7.510675 TCAAAAAGGATGATAACTACTCCCT 57.489 36.000 0.00 0.00 0.00 4.20
3210 3464 8.624776 CAATCAAAAAGGATGATAACTACTCCC 58.375 37.037 0.00 0.00 36.53 4.30
3211 3465 9.396022 TCAATCAAAAAGGATGATAACTACTCC 57.604 33.333 0.00 0.00 36.53 3.85
3213 3467 9.965902 AGTCAATCAAAAAGGATGATAACTACT 57.034 29.630 0.00 0.00 36.53 2.57
3647 3906 3.215151 TCCCAGTTGCGAACATACAAAA 58.785 40.909 0.00 0.00 0.00 2.44
3658 3917 0.323629 TCCCTAACTTCCCAGTTGCG 59.676 55.000 0.00 0.00 43.54 4.85
3822 4081 1.134175 ACCACAAAGCAAAGGACAACG 59.866 47.619 0.00 0.00 0.00 4.10
3863 4122 3.765381 TGAAAGAATGGTTCCATGCAGA 58.235 40.909 11.87 0.00 0.00 4.26
3905 4164 0.394938 TCTTAGGCACGCTTTCCACA 59.605 50.000 0.00 0.00 0.00 4.17
3972 4232 9.905713 TGGTTAGCATTAGATTCTTGTTTATCT 57.094 29.630 0.00 0.00 35.41 1.98
4106 4366 4.159693 ACTCTACATGATTTACAGGCGACA 59.840 41.667 0.00 0.00 33.22 4.35
4131 4391 8.953313 GCAAGTTTGTGTACTAATAGGGTAATT 58.047 33.333 0.00 0.00 0.00 1.40
4132 4392 8.104566 TGCAAGTTTGTGTACTAATAGGGTAAT 58.895 33.333 0.00 0.00 0.00 1.89
4133 4393 7.451732 TGCAAGTTTGTGTACTAATAGGGTAA 58.548 34.615 0.00 0.00 0.00 2.85
4134 4394 7.006865 TGCAAGTTTGTGTACTAATAGGGTA 57.993 36.000 0.00 0.00 0.00 3.69
4135 4395 5.871834 TGCAAGTTTGTGTACTAATAGGGT 58.128 37.500 0.00 0.00 0.00 4.34
4136 4396 6.422776 CTGCAAGTTTGTGTACTAATAGGG 57.577 41.667 0.00 0.00 0.00 3.53
4153 4413 0.881118 AATTGTACCCGCACTGCAAG 59.119 50.000 1.11 0.00 42.29 4.01
4154 4414 1.268352 GAAATTGTACCCGCACTGCAA 59.732 47.619 1.11 0.00 0.00 4.08
4155 4415 0.878416 GAAATTGTACCCGCACTGCA 59.122 50.000 1.11 0.00 0.00 4.41
4156 4416 0.878416 TGAAATTGTACCCGCACTGC 59.122 50.000 0.00 0.00 0.00 4.40
4157 4417 3.687212 TGTATGAAATTGTACCCGCACTG 59.313 43.478 0.00 0.00 0.00 3.66
4158 4418 3.945346 TGTATGAAATTGTACCCGCACT 58.055 40.909 0.00 0.00 0.00 4.40
4159 4419 4.083217 TGTTGTATGAAATTGTACCCGCAC 60.083 41.667 0.00 0.00 0.00 5.34
4160 4420 4.072839 TGTTGTATGAAATTGTACCCGCA 58.927 39.130 0.00 0.00 0.00 5.69
4161 4421 4.688511 TGTTGTATGAAATTGTACCCGC 57.311 40.909 0.00 0.00 0.00 6.13
4162 4422 6.249035 ACTTGTTGTATGAAATTGTACCCG 57.751 37.500 0.00 0.00 0.00 5.28
4163 4423 6.364976 GCAACTTGTTGTATGAAATTGTACCC 59.635 38.462 13.97 0.00 0.00 3.69
4164 4424 6.920758 TGCAACTTGTTGTATGAAATTGTACC 59.079 34.615 13.97 0.00 0.00 3.34
4165 4425 7.922505 TGCAACTTGTTGTATGAAATTGTAC 57.077 32.000 13.97 0.00 0.00 2.90
4166 4426 8.932945 TTTGCAACTTGTTGTATGAAATTGTA 57.067 26.923 13.97 0.00 0.00 2.41
4167 4427 7.840342 TTTGCAACTTGTTGTATGAAATTGT 57.160 28.000 13.97 0.00 0.00 2.71
4168 4428 9.160576 CATTTTGCAACTTGTTGTATGAAATTG 57.839 29.630 13.97 10.35 0.00 2.32
4169 4429 9.107177 TCATTTTGCAACTTGTTGTATGAAATT 57.893 25.926 13.97 4.30 0.00 1.82
4170 4430 8.550376 GTCATTTTGCAACTTGTTGTATGAAAT 58.450 29.630 13.97 10.45 0.00 2.17
4171 4431 7.763528 AGTCATTTTGCAACTTGTTGTATGAAA 59.236 29.630 13.97 8.90 0.00 2.69
4172 4432 7.264221 AGTCATTTTGCAACTTGTTGTATGAA 58.736 30.769 13.97 8.64 0.00 2.57
4173 4433 6.804677 AGTCATTTTGCAACTTGTTGTATGA 58.195 32.000 13.97 13.51 0.00 2.15
4174 4434 6.696583 TGAGTCATTTTGCAACTTGTTGTATG 59.303 34.615 13.97 11.94 0.00 2.39
4175 4435 6.804677 TGAGTCATTTTGCAACTTGTTGTAT 58.195 32.000 13.97 2.36 0.00 2.29
4176 4436 6.201226 TGAGTCATTTTGCAACTTGTTGTA 57.799 33.333 13.97 7.66 0.00 2.41
4177 4437 5.070770 TGAGTCATTTTGCAACTTGTTGT 57.929 34.783 13.97 0.00 0.00 3.32
4178 4438 5.981315 AGATGAGTCATTTTGCAACTTGTTG 59.019 36.000 7.16 8.95 0.00 3.33
4179 4439 6.152932 AGATGAGTCATTTTGCAACTTGTT 57.847 33.333 7.16 0.00 0.00 2.83
4180 4440 5.779529 AGATGAGTCATTTTGCAACTTGT 57.220 34.783 7.16 0.00 0.00 3.16
4181 4441 6.448053 CAAGATGAGTCATTTTGCAACTTG 57.552 37.500 19.91 15.54 35.73 3.16
4188 4448 2.167075 GGGGGCAAGATGAGTCATTTTG 59.833 50.000 24.97 24.97 38.46 2.44
4189 4449 2.043526 AGGGGGCAAGATGAGTCATTTT 59.956 45.455 7.16 4.96 0.00 1.82
4190 4450 1.642762 AGGGGGCAAGATGAGTCATTT 59.357 47.619 7.16 0.00 0.00 2.32
4191 4451 1.302907 AGGGGGCAAGATGAGTCATT 58.697 50.000 7.16 0.00 0.00 2.57
4192 4452 2.196742 TAGGGGGCAAGATGAGTCAT 57.803 50.000 4.98 4.98 0.00 3.06
4193 4453 1.965414 TTAGGGGGCAAGATGAGTCA 58.035 50.000 0.00 0.00 0.00 3.41
4194 4454 2.239907 AGTTTAGGGGGCAAGATGAGTC 59.760 50.000 0.00 0.00 0.00 3.36
4195 4455 2.239907 GAGTTTAGGGGGCAAGATGAGT 59.760 50.000 0.00 0.00 0.00 3.41
4196 4456 2.743183 CGAGTTTAGGGGGCAAGATGAG 60.743 54.545 0.00 0.00 0.00 2.90
4197 4457 1.209504 CGAGTTTAGGGGGCAAGATGA 59.790 52.381 0.00 0.00 0.00 2.92
4198 4458 1.065418 ACGAGTTTAGGGGGCAAGATG 60.065 52.381 0.00 0.00 0.00 2.90
4199 4459 1.286248 ACGAGTTTAGGGGGCAAGAT 58.714 50.000 0.00 0.00 0.00 2.40
4200 4460 1.061546 AACGAGTTTAGGGGGCAAGA 58.938 50.000 0.00 0.00 0.00 3.02
4201 4461 1.905637 AAACGAGTTTAGGGGGCAAG 58.094 50.000 0.00 0.00 0.00 4.01
4202 4462 1.957877 CAAAACGAGTTTAGGGGGCAA 59.042 47.619 1.32 0.00 31.63 4.52
4203 4463 1.611519 CAAAACGAGTTTAGGGGGCA 58.388 50.000 1.32 0.00 31.63 5.36
4204 4464 0.242825 GCAAAACGAGTTTAGGGGGC 59.757 55.000 1.32 0.00 31.63 5.80
4207 4467 3.645474 AACCCGCAAAACGAGTTTAGGG 61.645 50.000 23.07 23.07 40.05 3.53
4208 4468 1.605232 AACCCGCAAAACGAGTTTAGG 59.395 47.619 1.32 6.30 40.05 2.69
4209 4469 2.288458 TGAACCCGCAAAACGAGTTTAG 59.712 45.455 1.32 0.00 43.35 1.85
4210 4470 2.031930 GTGAACCCGCAAAACGAGTTTA 59.968 45.455 1.32 0.00 43.35 2.01
4211 4471 1.096416 TGAACCCGCAAAACGAGTTT 58.904 45.000 0.00 0.00 43.35 2.66
4212 4472 0.379316 GTGAACCCGCAAAACGAGTT 59.621 50.000 0.00 0.00 46.25 3.01
4216 4476 0.591170 ATCAGTGAACCCGCAAAACG 59.409 50.000 0.00 0.00 43.15 3.60
4217 4477 1.930371 GCATCAGTGAACCCGCAAAAC 60.930 52.381 0.00 0.00 0.00 2.43
4218 4478 0.313672 GCATCAGTGAACCCGCAAAA 59.686 50.000 0.00 0.00 0.00 2.44
4219 4479 0.821301 TGCATCAGTGAACCCGCAAA 60.821 50.000 0.00 0.00 0.00 3.68
4220 4480 1.228094 TGCATCAGTGAACCCGCAA 60.228 52.632 0.00 0.00 0.00 4.85
4221 4481 1.965930 GTGCATCAGTGAACCCGCA 60.966 57.895 0.00 1.16 0.00 5.69
4222 4482 1.514678 TTGTGCATCAGTGAACCCGC 61.515 55.000 0.00 0.00 32.43 6.13
4223 4483 1.167851 ATTGTGCATCAGTGAACCCG 58.832 50.000 0.00 0.00 32.43 5.28
4224 4484 2.414559 CGAATTGTGCATCAGTGAACCC 60.415 50.000 0.00 0.00 32.43 4.11
4225 4485 2.855180 CGAATTGTGCATCAGTGAACC 58.145 47.619 0.00 0.00 32.43 3.62
4226 4486 2.245096 GCGAATTGTGCATCAGTGAAC 58.755 47.619 0.00 0.00 34.19 3.18
4227 4487 1.136000 CGCGAATTGTGCATCAGTGAA 60.136 47.619 0.00 0.00 0.00 3.18
4228 4488 0.443478 CGCGAATTGTGCATCAGTGA 59.557 50.000 0.00 0.00 0.00 3.41
4229 4489 0.166597 ACGCGAATTGTGCATCAGTG 59.833 50.000 15.93 0.00 0.00 3.66
4230 4490 0.443869 GACGCGAATTGTGCATCAGT 59.556 50.000 15.93 0.00 0.00 3.41
4231 4491 0.247814 GGACGCGAATTGTGCATCAG 60.248 55.000 15.93 0.00 0.00 2.90
4232 4492 1.793581 GGACGCGAATTGTGCATCA 59.206 52.632 15.93 0.00 0.00 3.07
4233 4493 1.296867 CGGACGCGAATTGTGCATC 60.297 57.895 15.93 0.00 0.00 3.91
4234 4494 2.784596 CGGACGCGAATTGTGCAT 59.215 55.556 15.93 0.00 0.00 3.96
4235 4495 4.083600 GCGGACGCGAATTGTGCA 62.084 61.111 15.93 0.00 0.00 4.57
4236 4496 2.849142 AATGCGGACGCGAATTGTGC 62.849 55.000 15.93 8.36 45.51 4.57
4237 4497 0.371989 TAATGCGGACGCGAATTGTG 59.628 50.000 15.93 0.00 45.51 3.33
4238 4498 0.650512 CTAATGCGGACGCGAATTGT 59.349 50.000 15.93 0.00 45.51 2.71
4239 4499 0.654472 GCTAATGCGGACGCGAATTG 60.654 55.000 15.93 0.00 45.51 2.32
4240 4500 1.641677 GCTAATGCGGACGCGAATT 59.358 52.632 15.93 9.48 45.51 2.17
4241 4501 2.244651 GGCTAATGCGGACGCGAAT 61.245 57.895 15.93 0.00 45.51 3.34
4242 4502 2.888534 GGCTAATGCGGACGCGAA 60.889 61.111 15.93 0.00 45.51 4.70
4243 4503 4.136511 TGGCTAATGCGGACGCGA 62.137 61.111 15.93 1.91 45.51 5.87
4244 4504 3.925238 GTGGCTAATGCGGACGCG 61.925 66.667 3.53 3.53 45.51 6.01
4245 4505 3.925238 CGTGGCTAATGCGGACGC 61.925 66.667 10.13 10.13 38.33 5.19
4246 4506 2.508439 ACGTGGCTAATGCGGACG 60.508 61.111 0.00 8.82 45.32 4.79
4247 4507 2.514013 CGACGTGGCTAATGCGGAC 61.514 63.158 0.00 0.00 40.82 4.79
4248 4508 2.202690 CGACGTGGCTAATGCGGA 60.203 61.111 0.00 0.00 40.82 5.54
4249 4509 3.261951 CCGACGTGGCTAATGCGG 61.262 66.667 0.00 0.00 40.82 5.69
4259 4519 4.446413 GTACCAGGGGCCGACGTG 62.446 72.222 0.00 0.00 0.00 4.49
4260 4520 4.691359 AGTACCAGGGGCCGACGT 62.691 66.667 0.00 0.00 0.00 4.34
4261 4521 3.387947 AAGTACCAGGGGCCGACG 61.388 66.667 0.00 0.00 0.00 5.12
4262 4522 2.267961 CAAGTACCAGGGGCCGAC 59.732 66.667 0.00 0.00 0.00 4.79
4263 4523 3.712907 GCAAGTACCAGGGGCCGA 61.713 66.667 0.00 0.00 0.00 5.54
4264 4524 4.796495 GGCAAGTACCAGGGGCCG 62.796 72.222 0.00 0.00 34.56 6.13
4265 4525 4.442454 GGGCAAGTACCAGGGGCC 62.442 72.222 0.00 0.00 43.86 5.80
4266 4526 3.657350 TGGGCAAGTACCAGGGGC 61.657 66.667 0.00 0.00 33.23 5.80
4267 4527 2.355115 GTGGGCAAGTACCAGGGG 59.645 66.667 0.00 0.00 39.00 4.79
4268 4528 2.046314 CGTGGGCAAGTACCAGGG 60.046 66.667 0.00 0.00 39.00 4.45
4269 4529 0.536460 AAACGTGGGCAAGTACCAGG 60.536 55.000 0.00 0.00 46.43 4.45
4270 4530 2.073816 CTAAACGTGGGCAAGTACCAG 58.926 52.381 0.00 0.00 39.00 4.00
4271 4531 1.270947 CCTAAACGTGGGCAAGTACCA 60.271 52.381 0.00 0.00 35.14 3.25
4272 4532 1.002315 TCCTAAACGTGGGCAAGTACC 59.998 52.381 0.00 0.00 0.00 3.34
4273 4533 2.460757 TCCTAAACGTGGGCAAGTAC 57.539 50.000 0.00 0.00 0.00 2.73
4274 4534 4.822685 TTATCCTAAACGTGGGCAAGTA 57.177 40.909 0.00 0.00 0.00 2.24
4275 4535 3.706600 TTATCCTAAACGTGGGCAAGT 57.293 42.857 0.00 0.00 0.00 3.16
4276 4536 5.339990 CAAATTATCCTAAACGTGGGCAAG 58.660 41.667 0.00 0.00 0.00 4.01
4277 4537 4.381079 GCAAATTATCCTAAACGTGGGCAA 60.381 41.667 0.00 0.00 0.00 4.52
4278 4538 3.129638 GCAAATTATCCTAAACGTGGGCA 59.870 43.478 0.00 0.00 0.00 5.36
4279 4539 3.129638 TGCAAATTATCCTAAACGTGGGC 59.870 43.478 0.00 0.00 0.00 5.36
4280 4540 4.202010 CCTGCAAATTATCCTAAACGTGGG 60.202 45.833 0.00 0.00 0.00 4.61
4281 4541 4.638421 TCCTGCAAATTATCCTAAACGTGG 59.362 41.667 0.00 0.00 0.00 4.94
4282 4542 5.448632 GGTCCTGCAAATTATCCTAAACGTG 60.449 44.000 0.00 0.00 0.00 4.49
4283 4543 4.638865 GGTCCTGCAAATTATCCTAAACGT 59.361 41.667 0.00 0.00 0.00 3.99
4284 4544 4.036380 GGGTCCTGCAAATTATCCTAAACG 59.964 45.833 0.00 0.00 0.00 3.60
4285 4545 4.341235 GGGGTCCTGCAAATTATCCTAAAC 59.659 45.833 0.00 0.00 0.00 2.01
4286 4546 4.542697 GGGGTCCTGCAAATTATCCTAAA 58.457 43.478 0.00 0.00 0.00 1.85
4287 4547 3.117284 GGGGGTCCTGCAAATTATCCTAA 60.117 47.826 0.00 0.00 0.00 2.69
4288 4548 2.445525 GGGGGTCCTGCAAATTATCCTA 59.554 50.000 0.00 0.00 0.00 2.94
4289 4549 1.217942 GGGGGTCCTGCAAATTATCCT 59.782 52.381 0.00 0.00 0.00 3.24
4290 4550 1.704641 GGGGGTCCTGCAAATTATCC 58.295 55.000 0.00 0.00 0.00 2.59
4307 4567 2.596553 TTTACGGCATACAGCGGGGG 62.597 60.000 0.00 0.00 46.82 5.40
4308 4568 0.534203 ATTTACGGCATACAGCGGGG 60.534 55.000 0.00 0.00 46.82 5.73
4309 4569 2.066262 CTATTTACGGCATACAGCGGG 58.934 52.381 0.00 0.00 46.82 6.13
4312 4572 3.988517 GAGACCTATTTACGGCATACAGC 59.011 47.826 0.00 0.00 44.65 4.40
4313 4573 5.455056 AGAGACCTATTTACGGCATACAG 57.545 43.478 0.00 0.00 0.00 2.74
4314 4574 5.048224 GCTAGAGACCTATTTACGGCATACA 60.048 44.000 0.00 0.00 0.00 2.29
4315 4575 5.400703 GCTAGAGACCTATTTACGGCATAC 58.599 45.833 0.00 0.00 0.00 2.39
4316 4576 4.461781 GGCTAGAGACCTATTTACGGCATA 59.538 45.833 0.00 0.00 0.00 3.14
4317 4577 3.258622 GGCTAGAGACCTATTTACGGCAT 59.741 47.826 0.00 0.00 0.00 4.40
4318 4578 2.626743 GGCTAGAGACCTATTTACGGCA 59.373 50.000 0.00 0.00 0.00 5.69
4319 4579 2.029200 GGGCTAGAGACCTATTTACGGC 60.029 54.545 0.00 0.00 41.12 5.68
4320 4580 3.228453 TGGGCTAGAGACCTATTTACGG 58.772 50.000 2.38 0.00 45.91 4.02
4321 4581 4.501058 GGTTGGGCTAGAGACCTATTTACG 60.501 50.000 2.38 0.00 45.91 3.18
4322 4582 4.407945 TGGTTGGGCTAGAGACCTATTTAC 59.592 45.833 2.38 0.00 45.91 2.01
4323 4583 4.627015 TGGTTGGGCTAGAGACCTATTTA 58.373 43.478 2.38 0.00 45.91 1.40
4324 4584 3.460825 TGGTTGGGCTAGAGACCTATTT 58.539 45.455 2.38 0.00 45.91 1.40
4325 4585 3.130734 TGGTTGGGCTAGAGACCTATT 57.869 47.619 2.38 0.00 45.91 1.73
4326 4586 2.868964 TGGTTGGGCTAGAGACCTAT 57.131 50.000 2.38 0.00 45.91 2.57
4327 4587 2.868964 ATGGTTGGGCTAGAGACCTA 57.131 50.000 2.38 0.00 45.91 3.08
4328 4588 2.868964 TATGGTTGGGCTAGAGACCT 57.131 50.000 2.38 0.00 45.91 3.85
4329 4589 2.303311 GGATATGGTTGGGCTAGAGACC 59.697 54.545 0.00 0.00 45.93 3.85
4330 4590 2.303311 GGGATATGGTTGGGCTAGAGAC 59.697 54.545 0.00 0.00 0.00 3.36
4331 4591 2.621070 GGGATATGGTTGGGCTAGAGA 58.379 52.381 0.00 0.00 0.00 3.10
4332 4592 1.276421 CGGGATATGGTTGGGCTAGAG 59.724 57.143 0.00 0.00 0.00 2.43
4333 4593 1.348064 CGGGATATGGTTGGGCTAGA 58.652 55.000 0.00 0.00 0.00 2.43
4334 4594 1.056660 ACGGGATATGGTTGGGCTAG 58.943 55.000 0.00 0.00 0.00 3.42
4335 4595 2.253610 CTACGGGATATGGTTGGGCTA 58.746 52.381 0.00 0.00 0.00 3.93
4336 4596 1.056660 CTACGGGATATGGTTGGGCT 58.943 55.000 0.00 0.00 0.00 5.19
4337 4597 0.605589 GCTACGGGATATGGTTGGGC 60.606 60.000 0.00 0.00 0.00 5.36
4338 4598 1.002087 GAGCTACGGGATATGGTTGGG 59.998 57.143 0.00 0.00 0.00 4.12
4339 4599 1.971357 AGAGCTACGGGATATGGTTGG 59.029 52.381 0.00 0.00 0.00 3.77
4340 4600 3.753294 AAGAGCTACGGGATATGGTTG 57.247 47.619 0.00 0.00 0.00 3.77
4341 4601 4.080526 ACAAAAGAGCTACGGGATATGGTT 60.081 41.667 0.00 0.00 0.00 3.67
4342 4602 3.454812 ACAAAAGAGCTACGGGATATGGT 59.545 43.478 0.00 0.00 0.00 3.55
4343 4603 4.058817 GACAAAAGAGCTACGGGATATGG 58.941 47.826 0.00 0.00 0.00 2.74
4344 4604 4.950050 AGACAAAAGAGCTACGGGATATG 58.050 43.478 0.00 0.00 0.00 1.78
4345 4605 5.104900 ACAAGACAAAAGAGCTACGGGATAT 60.105 40.000 0.00 0.00 0.00 1.63
4346 4606 4.222145 ACAAGACAAAAGAGCTACGGGATA 59.778 41.667 0.00 0.00 0.00 2.59
4347 4607 3.008049 ACAAGACAAAAGAGCTACGGGAT 59.992 43.478 0.00 0.00 0.00 3.85
4348 4608 2.367567 ACAAGACAAAAGAGCTACGGGA 59.632 45.455 0.00 0.00 0.00 5.14
4349 4609 2.767505 ACAAGACAAAAGAGCTACGGG 58.232 47.619 0.00 0.00 0.00 5.28
4350 4610 5.411781 AGATACAAGACAAAAGAGCTACGG 58.588 41.667 0.00 0.00 0.00 4.02
4351 4611 6.237332 CGAAGATACAAGACAAAAGAGCTACG 60.237 42.308 0.00 0.00 0.00 3.51
4352 4612 6.807230 TCGAAGATACAAGACAAAAGAGCTAC 59.193 38.462 0.00 0.00 0.00 3.58
4353 4613 6.807230 GTCGAAGATACAAGACAAAAGAGCTA 59.193 38.462 0.00 0.00 40.67 3.32
4354 4614 5.635700 GTCGAAGATACAAGACAAAAGAGCT 59.364 40.000 0.00 0.00 40.67 4.09
4355 4615 5.163943 GGTCGAAGATACAAGACAAAAGAGC 60.164 44.000 0.00 0.00 40.67 4.09
4356 4616 6.159988 AGGTCGAAGATACAAGACAAAAGAG 58.840 40.000 0.00 0.00 40.67 2.85
4357 4617 6.015350 AGAGGTCGAAGATACAAGACAAAAGA 60.015 38.462 0.00 0.00 40.67 2.52
4358 4618 6.159988 AGAGGTCGAAGATACAAGACAAAAG 58.840 40.000 0.00 0.00 40.67 2.27
4359 4619 6.015350 AGAGAGGTCGAAGATACAAGACAAAA 60.015 38.462 0.00 0.00 40.67 2.44
4360 4620 5.477291 AGAGAGGTCGAAGATACAAGACAAA 59.523 40.000 0.00 0.00 40.67 2.83
4361 4621 5.010933 AGAGAGGTCGAAGATACAAGACAA 58.989 41.667 0.00 0.00 40.67 3.18
4362 4622 4.396478 CAGAGAGGTCGAAGATACAAGACA 59.604 45.833 0.00 0.00 40.67 3.41
4363 4623 4.396790 ACAGAGAGGTCGAAGATACAAGAC 59.603 45.833 0.00 0.00 40.67 3.01
4364 4624 4.590918 ACAGAGAGGTCGAAGATACAAGA 58.409 43.478 0.00 0.00 40.67 3.02
4365 4625 4.974368 ACAGAGAGGTCGAAGATACAAG 57.026 45.455 0.00 0.00 40.67 3.16
4366 4626 5.723672 AAACAGAGAGGTCGAAGATACAA 57.276 39.130 0.00 0.00 40.67 2.41
4367 4627 5.723672 AAAACAGAGAGGTCGAAGATACA 57.276 39.130 0.00 0.00 40.67 2.29
4387 4647 1.892474 CGCTGGGGATTTGAGGAAAAA 59.108 47.619 0.00 0.00 0.00 1.94
4388 4648 1.074727 TCGCTGGGGATTTGAGGAAAA 59.925 47.619 0.00 0.00 0.00 2.29
4389 4649 0.695924 TCGCTGGGGATTTGAGGAAA 59.304 50.000 0.00 0.00 0.00 3.13
4390 4650 0.695924 TTCGCTGGGGATTTGAGGAA 59.304 50.000 0.00 0.00 0.00 3.36
4391 4651 0.695924 TTTCGCTGGGGATTTGAGGA 59.304 50.000 0.00 0.00 0.00 3.71
4392 4652 1.678101 GATTTCGCTGGGGATTTGAGG 59.322 52.381 0.00 0.00 0.00 3.86
4393 4653 1.678101 GGATTTCGCTGGGGATTTGAG 59.322 52.381 0.00 0.00 0.00 3.02
4394 4654 1.762708 GGATTTCGCTGGGGATTTGA 58.237 50.000 0.00 0.00 0.00 2.69
4395 4655 0.381801 CGGATTTCGCTGGGGATTTG 59.618 55.000 0.00 0.00 0.00 2.32
4396 4656 0.034477 ACGGATTTCGCTGGGGATTT 60.034 50.000 0.00 0.00 43.89 2.17
4397 4657 0.834612 TACGGATTTCGCTGGGGATT 59.165 50.000 0.00 0.00 43.89 3.01
4398 4658 0.393077 CTACGGATTTCGCTGGGGAT 59.607 55.000 0.00 0.00 43.89 3.85
4399 4659 0.685131 TCTACGGATTTCGCTGGGGA 60.685 55.000 0.00 0.00 43.89 4.81
4400 4660 0.529992 GTCTACGGATTTCGCTGGGG 60.530 60.000 0.00 0.00 43.89 4.96
4401 4661 0.529992 GGTCTACGGATTTCGCTGGG 60.530 60.000 0.00 0.00 43.89 4.45
4402 4662 0.460311 AGGTCTACGGATTTCGCTGG 59.540 55.000 0.00 0.00 43.89 4.85
4403 4663 1.405821 AGAGGTCTACGGATTTCGCTG 59.594 52.381 0.00 0.00 43.89 5.18
4404 4664 1.677052 GAGAGGTCTACGGATTTCGCT 59.323 52.381 0.00 0.00 43.89 4.93
4405 4665 1.269154 GGAGAGGTCTACGGATTTCGC 60.269 57.143 0.00 0.00 43.89 4.70
4406 4666 2.291190 GAGGAGAGGTCTACGGATTTCG 59.709 54.545 0.00 0.00 45.88 3.46
4407 4667 3.316868 CAGAGGAGAGGTCTACGGATTTC 59.683 52.174 0.00 0.00 0.00 2.17
4408 4668 3.292460 CAGAGGAGAGGTCTACGGATTT 58.708 50.000 0.00 0.00 0.00 2.17
4409 4669 2.242708 ACAGAGGAGAGGTCTACGGATT 59.757 50.000 0.00 0.00 0.00 3.01
4410 4670 1.847737 ACAGAGGAGAGGTCTACGGAT 59.152 52.381 0.00 0.00 0.00 4.18
4411 4671 1.287217 ACAGAGGAGAGGTCTACGGA 58.713 55.000 0.00 0.00 0.00 4.69
4412 4672 1.746220 CAACAGAGGAGAGGTCTACGG 59.254 57.143 0.00 0.00 0.00 4.02
4413 4673 2.438411 ACAACAGAGGAGAGGTCTACG 58.562 52.381 0.00 0.00 0.00 3.51
4414 4674 4.158209 GGTAACAACAGAGGAGAGGTCTAC 59.842 50.000 0.00 0.00 0.00 2.59
4415 4675 4.342359 GGTAACAACAGAGGAGAGGTCTA 58.658 47.826 0.00 0.00 0.00 2.59
4416 4676 3.166679 GGTAACAACAGAGGAGAGGTCT 58.833 50.000 0.00 0.00 0.00 3.85
4417 4677 2.234168 GGGTAACAACAGAGGAGAGGTC 59.766 54.545 0.00 0.00 39.74 3.85
4418 4678 2.258109 GGGTAACAACAGAGGAGAGGT 58.742 52.381 0.00 0.00 39.74 3.85
4419 4679 1.555533 GGGGTAACAACAGAGGAGAGG 59.444 57.143 0.00 0.00 39.74 3.69
4420 4680 2.257207 TGGGGTAACAACAGAGGAGAG 58.743 52.381 0.00 0.00 39.74 3.20
4421 4681 2.409064 TGGGGTAACAACAGAGGAGA 57.591 50.000 0.00 0.00 39.74 3.71
4422 4682 3.244911 ACATTGGGGTAACAACAGAGGAG 60.245 47.826 0.00 0.00 39.74 3.69
4423 4683 2.714250 ACATTGGGGTAACAACAGAGGA 59.286 45.455 0.00 0.00 39.74 3.71
4424 4684 3.081804 GACATTGGGGTAACAACAGAGG 58.918 50.000 0.00 0.00 39.74 3.69
4425 4685 3.753272 CAGACATTGGGGTAACAACAGAG 59.247 47.826 0.00 0.00 39.74 3.35
4426 4686 3.750371 CAGACATTGGGGTAACAACAGA 58.250 45.455 0.00 0.00 39.74 3.41
4427 4687 2.228822 GCAGACATTGGGGTAACAACAG 59.771 50.000 0.00 0.00 39.74 3.16
4428 4688 2.235016 GCAGACATTGGGGTAACAACA 58.765 47.619 0.00 0.00 39.74 3.33
4429 4689 1.199097 CGCAGACATTGGGGTAACAAC 59.801 52.381 0.00 0.00 36.17 3.32
4430 4690 1.529226 CGCAGACATTGGGGTAACAA 58.471 50.000 0.00 0.00 36.17 2.83
4431 4691 0.958382 GCGCAGACATTGGGGTAACA 60.958 55.000 0.30 0.00 39.95 2.41
4432 4692 0.958382 TGCGCAGACATTGGGGTAAC 60.958 55.000 5.66 0.00 39.95 2.50
4433 4693 0.250945 TTGCGCAGACATTGGGGTAA 60.251 50.000 11.31 0.00 39.95 2.85
4434 4694 0.676466 CTTGCGCAGACATTGGGGTA 60.676 55.000 11.31 0.00 39.95 3.69
4435 4695 1.973281 CTTGCGCAGACATTGGGGT 60.973 57.895 11.31 0.00 39.95 4.95
4436 4696 2.703798 CCTTGCGCAGACATTGGGG 61.704 63.158 11.31 0.49 39.95 4.96
4437 4697 1.675310 TCCTTGCGCAGACATTGGG 60.675 57.895 11.31 5.88 42.32 4.12
4438 4698 1.503542 GTCCTTGCGCAGACATTGG 59.496 57.895 21.12 13.09 33.08 3.16
4439 4699 1.133253 CGTCCTTGCGCAGACATTG 59.867 57.895 24.22 9.00 33.08 2.82
4440 4700 2.034879 CCGTCCTTGCGCAGACATT 61.035 57.895 24.22 0.00 33.08 2.71
4441 4701 2.434884 CCGTCCTTGCGCAGACAT 60.435 61.111 24.22 0.00 33.08 3.06
4447 4707 4.389576 CTTGTGCCGTCCTTGCGC 62.390 66.667 0.00 0.00 39.63 6.09
4448 4708 3.726517 CCTTGTGCCGTCCTTGCG 61.727 66.667 0.00 0.00 0.00 4.85
4449 4709 4.043200 GCCTTGTGCCGTCCTTGC 62.043 66.667 0.00 0.00 0.00 4.01
4450 4710 3.726517 CGCCTTGTGCCGTCCTTG 61.727 66.667 0.00 0.00 36.24 3.61
4469 4729 4.678269 ACGTCGCGTCACGGTGAG 62.678 66.667 21.96 7.11 44.41 3.51
4494 4754 3.912907 ATCCGTCCACGATCCGCC 61.913 66.667 0.00 0.00 43.02 6.13
4495 4755 2.658593 CATCCGTCCACGATCCGC 60.659 66.667 0.00 0.00 43.02 5.54
4496 4756 2.027605 CCATCCGTCCACGATCCG 59.972 66.667 0.00 0.00 43.02 4.18
4497 4757 2.421739 CCCATCCGTCCACGATCC 59.578 66.667 0.00 0.00 43.02 3.36
4498 4758 2.280186 GCCCATCCGTCCACGATC 60.280 66.667 0.00 0.00 43.02 3.69
4499 4759 2.764128 AGCCCATCCGTCCACGAT 60.764 61.111 0.00 0.00 43.02 3.73
4500 4760 3.770040 CAGCCCATCCGTCCACGA 61.770 66.667 0.00 0.00 43.02 4.35
4501 4761 4.838152 CCAGCCCATCCGTCCACG 62.838 72.222 0.00 0.00 39.44 4.94
4502 4762 4.489771 CCCAGCCCATCCGTCCAC 62.490 72.222 0.00 0.00 0.00 4.02
4519 4779 4.364409 GAACACCAACGTCGCCGC 62.364 66.667 0.00 0.00 37.70 6.53
4520 4780 4.054455 CGAACACCAACGTCGCCG 62.054 66.667 0.00 0.00 40.83 6.46
4521 4781 4.364409 GCGAACACCAACGTCGCC 62.364 66.667 6.01 0.00 43.03 5.54
4523 4783 2.244382 GTGCGAACACCAACGTCG 59.756 61.111 0.00 0.00 41.21 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.